Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50925.t1 | XP_003598897.1 | 98.3 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 9.20E-55 | 222.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50925.t1 | Q39080 | 90.4 | 115 | 11 | 0 | 1 | 115 | 1 | 115 | 8.2e-52 | 204.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50925.t1 | G7J1N4 | 98.3 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 6.6e-55 | 222.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050667 | MS.gene50925 | 0.801243 | 9.87E-49 | -1.69E-46 |
| MS.gene053224 | MS.gene50925 | 0.818569 | 1.83E-52 | -1.69E-46 |
| MS.gene057988 | MS.gene50925 | 0.982162 | 2.18E-154 | -1.69E-46 |
| MS.gene057990 | MS.gene50925 | 0.958147 | 4.83E-116 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene50925 | MS.gene50052 | PPI |
| MS.gene50925 | MS.gene005960 | PPI |
| MS.gene50925 | MS.gene50024 | PPI |
| MS.gene001011 | MS.gene50925 | PPI |
| MS.gene50925 | MS.gene014312 | PPI |
| MS.gene50925 | MS.gene057990 | PPI |
| MS.gene50925 | MS.gene54807 | PPI |
| MS.gene50925 | MS.gene014310 | PPI |
| MS.gene50925 | MS.gene056676 | PPI |
| MS.gene50925 | MS.gene069988 | PPI |
| MS.gene50925 | MS.gene34049 | PPI |
| MS.gene50925 | MS.gene003786 | PPI |
| MS.gene50925 | MS.gene37721 | PPI |
| MS.gene50925 | MS.gene45709 | PPI |
| MS.gene50925 | MS.gene05210 | PPI |
| MS.gene50925 | MS.gene50921 | PPI |
| MS.gene50925 | MS.gene039901 | PPI |
| MS.gene50925 | MS.gene064868 | PPI |
| MS.gene50925 | MS.gene057988 | PPI |
| MS.gene50925 | MS.gene039903 | PPI |
| MS.gene50925 | MS.gene66827 | PPI |
| MS.gene50925 | MS.gene57836 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50925.t1 | MTR_3g023120 | 98.261 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 3.12e-81 | 233 |
| MS.gene50925.t1 | MTR_5g029240 | 93.694 | 111 | 7 | 0 | 5 | 115 | 14 | 124 | 8.59e-74 | 215 |
| MS.gene50925.t1 | MTR_3g023120 | 97.727 | 88 | 2 | 0 | 1 | 88 | 1 | 88 | 1.30e-59 | 178 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50925.t1 | AT1G32210 | 90.435 | 115 | 11 | 0 | 1 | 115 | 1 | 115 | 2.03e-74 | 216 |
| MS.gene50925.t1 | AT2G35520 | 86.957 | 115 | 15 | 0 | 1 | 115 | 1 | 115 | 2.63e-71 | 208 |
| MS.gene50925.t1 | AT2G35520 | 86.957 | 115 | 15 | 0 | 1 | 115 | 1 | 115 | 2.63e-71 | 208 |
| MS.gene50925.t1 | AT2G35520 | 86.207 | 116 | 15 | 1 | 1 | 115 | 1 | 116 | 1.58e-69 | 204 |
| MS.gene50925.t1 | AT1G32210 | 90.909 | 88 | 8 | 0 | 1 | 88 | 1 | 88 | 1.10e-53 | 164 |
Find 31 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTAACTCCTTCCTTTC+AGG | 0.114983 | 3.3:-13858660 | MS.gene50925:CDS |
| TTGCGTAGGGACTGCAGTTC+TGG | 0.282207 | 3.3:-13858628 | MS.gene50925:CDS |
| TTGGTGATCATGAACTTTCT+TGG | 0.304837 | 3.3:-13858094 | MS.gene50925:CDS |
| CCTTGTTCTCTTTATTCACT+TGG | 0.305994 | 3.3:+13858420 | None:intergenic |
| CCTGAAAGGAAGGAGTTAAA+TGG | 0.336746 | 3.3:+13858660 | None:intergenic |
| AAGATCTTCTCCGCACTCTT+TGG | 0.356756 | 3.3:-13860082 | MS.gene50925:CDS |
| CTGCAATGTGGTGCTCCATT+TGG | 0.370798 | 3.3:-13858113 | MS.gene50925:CDS |
| CCAGGTAGTTTACATGGCTT+TGG | 0.389862 | 3.3:-13858694 | MS.gene50925:intron |
| TCTCTTTATTCACTTGGATC+CGG | 0.452230 | 3.3:+13858426 | None:intergenic |
| AAAATCTGCAAAAGCGCGCT+CGG | 0.463481 | 3.3:+13858141 | None:intergenic |
| TAAAGAGAACAAGGAATTCA+AGG | 0.465642 | 3.3:-13858411 | MS.gene50925:intron |
| AGGAACAACCTTGAGATTTG+TGG | 0.468795 | 3.3:+13860040 | None:intergenic |
| TGTCTTCACTGCCCTCCTCC+AGG | 0.470127 | 3.3:-13859925 | MS.gene50925:intron |
| GGAACAACCTTGAGATTTGT+GGG | 0.478791 | 3.3:+13860041 | None:intergenic |
| TAATGACCAGGTAGTTTACA+TGG | 0.487275 | 3.3:-13858700 | MS.gene50925:intron |
| TCAGGCGTACTTTCTTGCGT+AGG | 0.489843 | 3.3:-13858642 | MS.gene50925:CDS |
| CAGGCGTACTTTCTTGCGTA+GGG | 0.494144 | 3.3:-13858641 | MS.gene50925:CDS |
| AAATCTGCAAAAGCGCGCTC+GGG | 0.496102 | 3.3:+13858142 | None:intergenic |
| GGTAGTTTACATGGCTTTGG+TGG | 0.498163 | 3.3:-13858691 | MS.gene50925:CDS |
| CGCAAGAAAGTACGCCTGAA+AGG | 0.506042 | 3.3:+13858646 | None:intergenic |
| GAAAGTTCATGATCACCAAA+TGG | 0.518501 | 3.3:+13858098 | None:intergenic |
| GGAAAGGAAGTACCTGGAGG+AGG | 0.546155 | 3.3:+13859913 | None:intergenic |
| GTAGGGACTGCAGTTCTGGC+TGG | 0.550415 | 3.3:-13858624 | MS.gene50925:intron |
| AGAAAGTACGCCTGAAAGGA+AGG | 0.558835 | 3.3:+13858650 | None:intergenic |
| CCAAGTGAATAAAGAGAACA+AGG | 0.563011 | 3.3:-13858420 | MS.gene50925:CDS |
| GAAAGGAAGTACCTGGAGGA+GGG | 0.586265 | 3.3:+13859914 | None:intergenic |
| GATGGTGAAGTCTACTGCTA+AGG | 0.589667 | 3.3:-13860111 | MS.gene50925:CDS |
| GTAGTTTACATGGCTTTGGT+GGG | 0.595250 | 3.3:-13858690 | MS.gene50925:CDS |
| AACAACCTTGAGATTTGTGG+GGG | 0.618905 | 3.3:+13860043 | None:intergenic |
| GAACAACCTTGAGATTTGTG+GGG | 0.633022 | 3.3:+13860042 | None:intergenic |
| AATAAGCAGACCAAAGAGTG+CGG | 0.691016 | 3.3:+13860072 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTAAAAAATTAGACTT+GGG | + | chr3.3:13859346-13859365 | None:intergenic | 15.0% |
| !!! | TACAAGTGAAATTAATATTT+TGG | - | chr3.3:13859372-13859391 | MS.gene50925:intron | 15.0% |
| !!! | TGTTTTTAAAAAATTAGACT+TGG | + | chr3.3:13859347-13859366 | None:intergenic | 15.0% |
| !! | AATTCCTAATTCCTAATTAA+TGG | + | chr3.3:13859048-13859067 | None:intergenic | 20.0% |
| !! | TCATTAAACTAGAATCTAAA+AGG | + | chr3.3:13859320-13859339 | None:intergenic | 20.0% |
| !! | TTGTATTAATGTCATTATTC+TGG | - | chr3.3:13859877-13859896 | MS.gene50925:intron | 20.0% |
| !!! | AAATCAATCTTTGATTTTTG+TGG | - | chr3.3:13858378-13858397 | MS.gene50925:intron | 20.0% |
| !!! | GAAATTAATATTTTGGTGAT+GGG | - | chr3.3:13859379-13859398 | MS.gene50925:intron | 20.0% |
| !!! | TGAAATTAATATTTTGGTGA+TGG | - | chr3.3:13859378-13859397 | MS.gene50925:intron | 20.0% |
| ! | AACATCATAATACACAAGAA+AGG | + | chr3.3:13859822-13859841 | None:intergenic | 25.0% |
| ! | AAGATACAAGAAATATTCAG+AGG | + | chr3.3:13859928-13859947 | None:intergenic | 25.0% |
| ! | ACAAACTGGTTAAAAAATAG+AGG | + | chr3.3:13859752-13859771 | None:intergenic | 25.0% |
| ! | ACTAATCTGATCATGATATT+CGG | + | chr3.3:13858409-13858428 | None:intergenic | 25.0% |
| ! | AGAGTAAGATTAAAAATTGG+AGG | + | chr3.3:13859282-13859301 | None:intergenic | 25.0% |
| ! | ATGATTGGTATTTCATATAC+AGG | - | chr3.3:13860027-13860046 | MS.gene50925:intron | 25.0% |
| ! | CTTTATGTGTGTTATGTAAT+TGG | + | chr3.3:13858585-13858604 | None:intergenic | 25.0% |
| ! | GAGTAAGATTAAAAATTGGA+GGG | + | chr3.3:13859281-13859300 | None:intergenic | 25.0% |
| ! | GGTAGAGTAAGATTAAAAAT+TGG | + | chr3.3:13859285-13859304 | None:intergenic | 25.0% |
| ! | TATATGCAATAACATGTGTT+TGG | + | chr3.3:13858481-13858500 | None:intergenic | 25.0% |
| ! | TCTAAAAGGATAGTATTATC+TGG | + | chr3.3:13859306-13859325 | None:intergenic | 25.0% |
| ! | TGCAGGAAATACAAATATAT+AGG | - | chr3.3:13858883-13858902 | MS.gene50925:intron | 25.0% |
| !! | ATCTAGATAACAGTTTCTTT+TGG | + | chr3.3:13858609-13858628 | None:intergenic | 25.0% |
| !! | GATTGATTTACTAATGTTAC+AGG | + | chr3.3:13858367-13858386 | None:intergenic | 25.0% |
| !! | TCTAGATAACAGTTTCTTTT+GGG | + | chr3.3:13858608-13858627 | None:intergenic | 25.0% |
| !! | TTTTCATTTTCTTAATGACC+AGG | - | chr3.3:13859488-13859507 | MS.gene50925:intron | 25.0% |
| !!! | ATATTTTTGTAGAAATGCAG+AGG | + | chr3.3:13858193-13858212 | None:intergenic | 25.0% |
| !!! | TATTTTTGTAGAAATGCAGA+GGG | + | chr3.3:13858192-13858211 | None:intergenic | 25.0% |
| AAAACAAAGTTAACTTCCAC+GGG | - | chr3.3:13858829-13858848 | MS.gene50925:intron | 30.0% | |
| AAACTTATGCATATGAACCT+AGG | + | chr3.3:13859699-13859718 | None:intergenic | 30.0% | |
| AAGTAAGATCACAAATGTTG+TGG | + | chr3.3:13859221-13859240 | None:intergenic | 30.0% | |
| AATTCACCAAATCATCTTGA+AGG | - | chr3.3:13858709-13858728 | MS.gene50925:intron | 30.0% | |
| ACTGGTTAAAAAATAGAGGA+TGG | + | chr3.3:13859748-13859767 | None:intergenic | 30.0% | |
| ATCTTGAAGGAAGTAGATTA+GGG | - | chr3.3:13858722-13858741 | MS.gene50925:intron | 30.0% | |
| ATGTCTGGAAGGATATTATT+TGG | + | chr3.3:13859246-13859265 | None:intergenic | 30.0% | |
| CAAAACAAAGTTAACTTCCA+CGG | - | chr3.3:13858828-13858847 | MS.gene50925:intron | 30.0% | |
| CTTGACTGAACAAAATAGAA+AGG | - | chr3.3:13859951-13859970 | MS.gene50925:CDS | 30.0% | |
| GAAATGATGAAACAATGTGT+TGG | - | chr3.3:13859973-13859992 | MS.gene50925:intron | 30.0% | |
| GATAGATTCTTACAGATGAT+TGG | - | chr3.3:13860012-13860031 | MS.gene50925:intron | 30.0% | |
| GTGAAGAGTTCTATGATATT+TGG | + | chr3.3:13859177-13859196 | None:intergenic | 30.0% | |
| TAAAGAGAACAAGGAATTCA+AGG | - | chr3.3:13859789-13859808 | MS.gene50925:intron | 30.0% | |
| TTAGAAATTGAAGCAAGGAA+AGG | + | chr3.3:13858306-13858325 | None:intergenic | 30.0% | |
| ! | GATCTTTAGAAATTGAAGCA+AGG | + | chr3.3:13858311-13858330 | None:intergenic | 30.0% |
| !! | ATCATTGATTTGAGATCAGA+CGG | - | chr3.3:13859082-13859101 | MS.gene50925:intron | 30.0% |
| !!! | AGTTAACTTTGTTTTGCTGA+CGG | + | chr3.3:13858824-13858843 | None:intergenic | 30.0% |
| !!! | ATATTTTGGTGATGGGTTAA+AGG | - | chr3.3:13859386-13859405 | MS.gene50925:intron | 30.0% |
| !!! | TTTTTTAACCAGTTTGTCTC+CGG | - | chr3.3:13859755-13859774 | MS.gene50925:intron | 30.0% |
| AATCTGATCATGATATTCGG+AGG | + | chr3.3:13858406-13858425 | None:intergenic | 35.0% | |
| ACAAATATATAGGCTGCACA+TGG | - | chr3.3:13858893-13858912 | MS.gene50925:intron | 35.0% | |
| ATTCCTCAATAATGTCTGGA+AGG | + | chr3.3:13859257-13859276 | None:intergenic | 35.0% | |
| CAGATTTGTGAAGTAACTTC+TGG | + | chr3.3:13858531-13858550 | None:intergenic | 35.0% | |
| CATCTTGAAGGAAGTAGATT+AGG | - | chr3.3:13858721-13858740 | MS.gene50925:intron | 35.0% | |
| CCAAGTGAATAAAGAGAACA+AGG | - | chr3.3:13859780-13859799 | MS.gene50925:intron | 35.0% | |
| CCAGCCATTAATTAGGAATT+AGG | - | chr3.3:13859041-13859060 | MS.gene50925:intron | 35.0% | |
| CCTAATTCCTAATTAATGGC+TGG | + | chr3.3:13859044-13859063 | None:intergenic | 35.0% | |
| CCTTGTTCTCTTTATTCACT+TGG | + | chr3.3:13859783-13859802 | None:intergenic | 35.0% | |
| CTAAATGAAAAGCCAAAGCA+GGG | + | chr3.3:13858229-13858248 | None:intergenic | 35.0% | |
| CTACTTCCTTCAAGATGATT+TGG | + | chr3.3:13858718-13858737 | None:intergenic | 35.0% | |
| GAAAGTTCATGATCACCAAA+TGG | + | chr3.3:13860105-13860124 | None:intergenic | 35.0% | |
| GTGAATCGAATAGGTTACAT+AGG | + | chr3.3:13858792-13858811 | None:intergenic | 35.0% | |
| TAACTTCAACATCAACCTAC+TGG | + | chr3.3:13859416-13859435 | None:intergenic | 35.0% | |
| TAATGACCAGGTAGTTTACA+TGG | - | chr3.3:13859500-13859519 | MS.gene50925:intron | 35.0% | |
| TATCCTTCCAGACATTATTG+AGG | - | chr3.3:13859251-13859270 | MS.gene50925:intron | 35.0% | |
| TCTAAATGAAAAGCCAAAGC+AGG | + | chr3.3:13858230-13858249 | None:intergenic | 35.0% | |
| TCTCTTTATTCACTTGGATC+CGG | + | chr3.3:13859777-13859796 | None:intergenic | 35.0% | |
| TGTGACACGGTAAATAATCT+GGG | + | chr3.3:13859108-13859127 | None:intergenic | 35.0% | |
| TTACTTCACAAATCTGCAGA+AGG | - | chr3.3:13858535-13858554 | MS.gene50925:intron | 35.0% | |
| TTGGCATTAAATGTGTGACA+CGG | + | chr3.3:13859121-13859140 | None:intergenic | 35.0% | |
| ! | AGATTTTGTTCTCTGCAATG+TGG | - | chr3.3:13860075-13860094 | MS.gene50925:CDS | 35.0% |
| ! | GATCAGATTAGTCCAAATCA+GGG | - | chr3.3:13858417-13858436 | MS.gene50925:CDS | 35.0% |
| ! | GTTTCTTGGATTAGGATTCT+TGG | + | chr3.3:13859140-13859159 | None:intergenic | 35.0% |
| ! | TGATCAGATTAGTCCAAATC+AGG | - | chr3.3:13858416-13858435 | MS.gene50925:CDS | 35.0% |
| ! | TTGGTGATCATGAACTTTCT+TGG | - | chr3.3:13860106-13860125 | MS.gene50925:CDS | 35.0% |
| !! | ACAATAGTTCTAATCTGCCT+AGG | - | chr3.3:13859679-13859698 | MS.gene50925:intron | 35.0% |
| !! | GATGATTTGGTGAATTGTGA+TGG | + | chr3.3:13858705-13858724 | None:intergenic | 35.0% |
| !! | TATTTTTGCTAACCCTGCTT+TGG | - | chr3.3:13858214-13858233 | MS.gene50925:intron | 35.0% |
| AACAACCTTGAGATTTGTGG+GGG | + | chr3.3:13858160-13858179 | None:intergenic | 40.0% | |
| AATAAGCAGACCAAAGAGTG+CGG | + | chr3.3:13858131-13858150 | None:intergenic | 40.0% | |
| AGGAACAACCTTGAGATTTG+TGG | + | chr3.3:13858163-13858182 | None:intergenic | 40.0% | |
| ATAAAATATCCCAGCTGGCA+AGG | + | chr3.3:13858972-13858991 | None:intergenic | 40.0% | |
| ATATACCTGAATACGCTAGG+GGG | - | chr3.3:13858936-13858955 | MS.gene50925:intron | 40.0% | |
| ATATCCGCAATCGCATATTC+TGG | + | chr3.3:13858920-13858939 | None:intergenic | 40.0% | |
| ATCGAATAGGTTACATAGGC+AGG | + | chr3.3:13858788-13858807 | None:intergenic | 40.0% | |
| ATGATATTTGGACTCCAGTG+AGG | + | chr3.3:13859165-13859184 | None:intergenic | 40.0% | |
| ATTCCTAATTAATGGCTGGC+AGG | + | chr3.3:13859040-13859059 | None:intergenic | 40.0% | |
| CCATTTAACTCCTTCCTTTC+AGG | - | chr3.3:13859540-13859559 | MS.gene50925:intron | 40.0% | |
| CCTCTTTCTTCCTTTGCTTT+GGG | - | chr3.3:13859001-13859020 | MS.gene50925:intron | 40.0% | |
| CCTGAAAGGAAGGAGTTAAA+TGG | + | chr3.3:13859543-13859562 | None:intergenic | 40.0% | |
| CTCACATAAAATATCCCAGC+TGG | + | chr3.3:13858977-13858996 | None:intergenic | 40.0% | |
| GAACAACCTTGAGATTTGTG+GGG | + | chr3.3:13858161-13858180 | None:intergenic | 40.0% | |
| GATATACCTGAATACGCTAG+GGG | - | chr3.3:13858935-13858954 | MS.gene50925:intron | 40.0% | |
| GCAAGTTCTCATACATTTCC+TGG | + | chr3.3:13858761-13858780 | None:intergenic | 40.0% | |
| GGAACAACCTTGAGATTTGT+GGG | + | chr3.3:13858162-13858181 | None:intergenic | 40.0% | |
| GGATATACCTGAATACGCTA+GGG | - | chr3.3:13858934-13858953 | MS.gene50925:intron | 40.0% | |
| GGGAATTCCTCAATAATGTC+TGG | + | chr3.3:13859261-13859280 | None:intergenic | 40.0% | |
| GTGTGACACGGTAAATAATC+TGG | + | chr3.3:13859109-13859128 | None:intergenic | 40.0% | |
| GTGTGCATAAATTGCATAGC+TGG | + | chr3.3:13859637-13859656 | None:intergenic | 40.0% | |
| TAAAATATCCCAGCTGGCAA+GGG | + | chr3.3:13858971-13858990 | None:intergenic | 40.0% | |
| TATCCGCAATCGCATATTCT+GGG | + | chr3.3:13858919-13858938 | None:intergenic | 40.0% | |
| TGACATTGTGCTGAATTTCC+CGG | - | chr3.3:13858504-13858523 | MS.gene50925:intron | 40.0% | |
| TGCGTGCAATTTCTAATGCA+AGG | + | chr3.3:13858633-13858652 | None:intergenic | 40.0% | |
| TTACCTGCCAGCCATTAATT+AGG | - | chr3.3:13859034-13859053 | MS.gene50925:intron | 40.0% | |
| TTCGACCAATGATTCGAGAT+TGG | - | chr3.3:13858672-13858691 | MS.gene50925:CDS | 40.0% | |
| TTGTATTTCCTGCAATGTCC+AGG | + | chr3.3:13858877-13858896 | None:intergenic | 40.0% | |
| TTGTGAAGTAACTTCTGGAC+CGG | + | chr3.3:13858526-13858545 | None:intergenic | 40.0% | |
| !! | GTAGTTTACATGGCTTTGGT+GGG | - | chr3.3:13859510-13859529 | MS.gene50925:intron | 40.0% |
| AAGATCTTCTCCGCACTCTT+TGG | - | chr3.3:13858118-13858137 | MS.gene50925:CDS | 45.0% | |
| AATCCAAGAAACTGCCTCAC+TGG | - | chr3.3:13859148-13859167 | MS.gene50925:intron | 45.0% | |
| ACCAGGAGAGTGAATCGAAT+AGG | + | chr3.3:13858801-13858820 | None:intergenic | 45.0% | |
| ACCTATTCGATTCACTCTCC+TGG | - | chr3.3:13858797-13858816 | MS.gene50925:intron | 45.0% | |
| AGAAATGCAGAGGGAAAGAG+AGG | + | chr3.3:13858183-13858202 | None:intergenic | 45.0% | |
| AGGCACTAGAAACATGGACA+CGG | - | chr3.3:13858555-13858574 | MS.gene50925:intron | 45.0% | |
| ATAGGTTACATAGGCAGGAC+AGG | + | chr3.3:13858783-13858802 | None:intergenic | 45.0% | |
| ATTAATGGCTGGCAGGTAAC+AGG | + | chr3.3:13859033-13859052 | None:intergenic | 45.0% | |
| CACAAATGTTGTGGTGATCG+AGG | + | chr3.3:13859212-13859231 | None:intergenic | 45.0% | |
| CCAAAGCCATGTAAACTACC+TGG | + | chr3.3:13859509-13859528 | None:intergenic | 45.0% | |
| CCAGGTAGTTTACATGGCTT+TGG | - | chr3.3:13859506-13859525 | MS.gene50925:intron | 45.0% | |
| CCCAAAGCAAAGGAAGAAAG+AGG | + | chr3.3:13859004-13859023 | None:intergenic | 45.0% | |
| CGGATATACCTGAATACGCT+AGG | - | chr3.3:13858933-13858952 | MS.gene50925:intron | 45.0% | |
| GAGTTTCTTCCACCCTGATT+TGG | + | chr3.3:13858432-13858451 | None:intergenic | 45.0% | |
| GATCTGCCATCGAAAGGAAA+TGG | - | chr3.3:13858851-13858870 | MS.gene50925:intron | 45.0% | |
| GCCTCTTTCTTCCTTTGCTT+TGG | - | chr3.3:13859000-13859019 | MS.gene50925:intron | 45.0% | |
| GCTCACCAATCTCGAATCAT+TGG | + | chr3.3:13858680-13858699 | None:intergenic | 45.0% | |
| GGGTGGAAGAAACTCTTATC+TGG | - | chr3.3:13858437-13858456 | MS.gene50925:intron | 45.0% | |
| GTGAGGCAGTTTCTTGGATT+AGG | + | chr3.3:13859148-13859167 | None:intergenic | 45.0% | |
| TGAAGGAAGTAGATTAGGGC+AGG | - | chr3.3:13858726-13858745 | MS.gene50925:intron | 45.0% | |
| TGTGAAGTAACTTCTGGACC+GGG | + | chr3.3:13858525-13858544 | None:intergenic | 45.0% | |
| ! | AAAATCTGCAAAAGCGCGCT+CGG | + | chr3.3:13860062-13860081 | None:intergenic | 45.0% |
| ! | AGAAAGTACGCCTGAAAGGA+AGG | + | chr3.3:13859553-13859572 | None:intergenic | 45.0% |
| ! | CAGATTAGTCCAAATCAGGG+TGG | - | chr3.3:13858420-13858439 | MS.gene50925:CDS | 45.0% |
| ! | TGGGTTAAAGGTTAGCCAGT+AGG | - | chr3.3:13859398-13859417 | MS.gene50925:intron | 45.0% |
| !! | AAGCAAGGAAAGGAAGTACC+TGG | + | chr3.3:13858296-13858315 | None:intergenic | 45.0% |
| !! | GGTAGTTTACATGGCTTTGG+TGG | - | chr3.3:13859509-13859528 | MS.gene50925:intron | 45.0% |
| !! | TGCAGAAGGCACTAGAAACA+TGG | - | chr3.3:13858549-13858568 | MS.gene50925:intron | 45.0% |
| ACTCCAGTGAGGCAGTTTCT+TGG | + | chr3.3:13859154-13859173 | None:intergenic | 50.0% | |
| ACTTGGATCCGGAGACAAAC+TGG | + | chr3.3:13859766-13859785 | None:intergenic | 50.0% | |
| CAGGCGTACTTTCTTGCGTA+GGG | - | chr3.3:13859559-13859578 | MS.gene50925:intron | 50.0% | |
| CTGCAATGTGGTGCTCCATT+TGG | - | chr3.3:13860087-13860106 | MS.gene50925:CDS | 50.0% | |
| TCAGGCGTACTTTCTTGCGT+AGG | - | chr3.3:13859558-13859577 | MS.gene50925:intron | 50.0% | |
| TCCAGGCCATTTCCTTTCGA+TGG | + | chr3.3:13858860-13858879 | None:intergenic | 50.0% | |
| TGATCTTTCCCTTGCCAGCT+GGG | - | chr3.3:13858960-13858979 | MS.gene50925:intron | 50.0% | |
| TGCAACCCCCACAAATCTCA+AGG | - | chr3.3:13858152-13858171 | MS.gene50925:CDS | 50.0% | |
| TGGCCCAGAATATGCGATTG+CGG | - | chr3.3:13858913-13858932 | MS.gene50925:intron | 50.0% | |
| ! | AAATCTGCAAAAGCGCGCTC+GGG | + | chr3.3:13860061-13860080 | None:intergenic | 50.0% |
| ! | CGCAAGAAAGTACGCCTGAA+AGG | + | chr3.3:13859557-13859576 | None:intergenic | 50.0% |
| !! | CAAGGAAAGGAAGTACCTGG+AGG | + | chr3.3:13858293-13858312 | None:intergenic | 50.0% |
| !! | GAAAGGAAGTACCTGGAGGA+GGG | + | chr3.3:13858289-13858308 | None:intergenic | 50.0% |
| !! | TCTTCCTTTGCTTTGGGACG+AGG | - | chr3.3:13859007-13859026 | MS.gene50925:intron | 50.0% |
| !!! | CTTTGTTTTGCTGACGGACC+AGG | + | chr3.3:13858818-13858837 | None:intergenic | 50.0% |
| ATCAGCCCCCTAGCGTATTC+AGG | + | chr3.3:13858944-13858963 | None:intergenic | 55.0% | |
| CTGATCTTTCCCTTGCCAGC+TGG | - | chr3.3:13858959-13858978 | MS.gene50925:intron | 55.0% | |
| GCCATCGAAAGGAAATGGCC+TGG | - | chr3.3:13858856-13858875 | MS.gene50925:intron | 55.0% | |
| GGAAATGGCCTGGACATTGC+AGG | - | chr3.3:13858866-13858885 | MS.gene50925:intron | 55.0% | |
| TTGCGTAGGGACTGCAGTTC+TGG | - | chr3.3:13859572-13859591 | MS.gene50925:intron | 55.0% | |
| !! | GGAAAGGAAGTACCTGGAGG+AGG | + | chr3.3:13858290-13858309 | None:intergenic | 55.0% |
| CAGGCCTCGTCCCAAAGCAA+AGG | + | chr3.3:13859014-13859033 | None:intergenic | 60.0% | |
| CCACGGGATCTGCCATCGAA+AGG | - | chr3.3:13858845-13858864 | MS.gene50925:intron | 60.0% | |
| CCTTTCGATGGCAGATCCCG+TGG | + | chr3.3:13858848-13858867 | None:intergenic | 60.0% | |
| TGTCTTCACTGCCCTCCTCC+AGG | - | chr3.3:13858275-13858294 | MS.gene50925:intron | 60.0% | |
| ! | GTAGGGACTGCAGTTCTGGC+TGG | - | chr3.3:13859576-13859595 | MS.gene50925:intron | 60.0% |
| TAGGGCAGGCTAACAGCGCC+AGG | - | chr3.3:13858740-13858759 | MS.gene50925:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 13858090 | 13860132 | 13858090 | ID=MS.gene50925 |
| chr3.3 | mRNA | 13858090 | 13860132 | 13858090 | ID=MS.gene50925.t1;Parent=MS.gene50925 |
| chr3.3 | exon | 13860049 | 13860132 | 13860049 | ID=MS.gene50925.t1.exon1;Parent=MS.gene50925.t1 |
| chr3.3 | CDS | 13860049 | 13860132 | 13860049 | ID=cds.MS.gene50925.t1;Parent=MS.gene50925.t1 |
| chr3.3 | exon | 13859926 | 13859973 | 13859926 | ID=MS.gene50925.t1.exon2;Parent=MS.gene50925.t1 |
| chr3.3 | CDS | 13859926 | 13859973 | 13859926 | ID=cds.MS.gene50925.t1;Parent=MS.gene50925.t1 |
| chr3.3 | exon | 13858625 | 13858712 | 13858625 | ID=MS.gene50925.t1.exon3;Parent=MS.gene50925.t1 |
| chr3.3 | CDS | 13858625 | 13858712 | 13858625 | ID=cds.MS.gene50925.t1;Parent=MS.gene50925.t1 |
| chr3.3 | exon | 13858412 | 13858455 | 13858412 | ID=MS.gene50925.t1.exon4;Parent=MS.gene50925.t1 |
| chr3.3 | CDS | 13858412 | 13858455 | 13858412 | ID=cds.MS.gene50925.t1;Parent=MS.gene50925.t1 |
| chr3.3 | exon | 13858090 | 13858173 | 13858090 | ID=MS.gene50925.t1.exon5;Parent=MS.gene50925.t1 |
| chr3.3 | CDS | 13858090 | 13858173 | 13858090 | ID=cds.MS.gene50925.t1;Parent=MS.gene50925.t1 |
| Gene Sequence |
| Protein sequence |
