Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039901.t1 | XP_003598897.1 | 99.1 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 5.40E-55 | 223.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039901.t1 | Q39080 | 91.3 | 115 | 10 | 0 | 1 | 115 | 1 | 115 | 4.8e-52 | 204.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039901.t1 | G7J1N4 | 99.1 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 3.9e-55 | 223.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37721 | MS.gene039901 | PPI |
| MS.gene069988 | MS.gene039901 | PPI |
| MS.gene057988 | MS.gene039901 | PPI |
| MS.gene039901 | MS.gene45709 | PPI |
| MS.gene056676 | MS.gene039901 | PPI |
| MS.gene039901 | MS.gene064868 | PPI |
| MS.gene001011 | MS.gene039901 | PPI |
| MS.gene014312 | MS.gene039901 | PPI |
| MS.gene66827 | MS.gene039901 | PPI |
| MS.gene039903 | MS.gene039901 | PPI |
| MS.gene003786 | MS.gene039901 | PPI |
| MS.gene039901 | MS.gene50052 | PPI |
| MS.gene005960 | MS.gene039901 | PPI |
| MS.gene34049 | MS.gene039901 | PPI |
| MS.gene039901 | MS.gene57836 | PPI |
| MS.gene50024 | MS.gene039901 | PPI |
| MS.gene057990 | MS.gene039901 | PPI |
| MS.gene50925 | MS.gene039901 | PPI |
| MS.gene039901 | MS.gene54807 | PPI |
| MS.gene50921 | MS.gene039901 | PPI |
| MS.gene05210 | MS.gene039901 | PPI |
| MS.gene014310 | MS.gene039901 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039901.t1 | MTR_3g023120 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 1.40e-81 | 234 |
| MS.gene039901.t1 | MTR_5g029240 | 92.793 | 111 | 8 | 0 | 5 | 115 | 14 | 124 | 1.96e-73 | 214 |
| MS.gene039901.t1 | MTR_3g023120 | 98.864 | 88 | 1 | 0 | 1 | 88 | 1 | 88 | 5.05e-60 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039901.t1 | AT1G32210 | 91.304 | 115 | 10 | 0 | 1 | 115 | 1 | 115 | 6.62e-75 | 218 |
| MS.gene039901.t1 | AT2G35520 | 87.826 | 115 | 14 | 0 | 1 | 115 | 1 | 115 | 8.22e-72 | 209 |
| MS.gene039901.t1 | AT2G35520 | 87.826 | 115 | 14 | 0 | 1 | 115 | 1 | 115 | 8.22e-72 | 209 |
| MS.gene039901.t1 | AT2G35520 | 87.069 | 116 | 14 | 1 | 1 | 115 | 1 | 116 | 4.87e-70 | 205 |
| MS.gene039901.t1 | AT1G32210 | 92.045 | 88 | 7 | 0 | 1 | 88 | 1 | 88 | 4.49e-54 | 164 |
Find 31 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTAACTCCTTCCTTTC+AGG | 0.114983 | 3.1:-13292570 | MS.gene039901:CDS |
| CCTTGTTCTCTTTATTCACT+TGG | 0.305994 | 3.1:+13292307 | None:intergenic |
| AAGATCTTCTCCGAACTCTT+TGG | 0.343348 | 3.1:-13294128 | MS.gene039901:CDS |
| CCTGAAAGGAAGGAGTTAAA+TGG | 0.359284 | 3.1:+13292570 | None:intergenic |
| CCAGGTAGTTTACATGGCTT+TGG | 0.389862 | 3.1:-13292604 | MS.gene039901:intron |
| TTGGTCATCATGAACTTCCT+TGG | 0.439540 | 3.1:-13291919 | MS.gene039901:CDS |
| GTGCAATGTGGTGCTCCATT+TGG | 0.442688 | 3.1:-13291938 | MS.gene039901:CDS |
| AGGAAGAACCTTGAGATTTG+TGG | 0.450140 | 3.1:+13294086 | None:intergenic |
| TCAGGCGTGCTTTCTTGCGT+AGG | 0.450212 | 3.1:-13292552 | MS.gene039901:CDS |
| TCTCTTTATTCACTTGGATC+CGG | 0.452230 | 3.1:+13292313 | None:intergenic |
| GGAAGAACCTTGAGATTTGT+GGG | 0.462343 | 3.1:+13294087 | None:intergenic |
| TAAAGAGAACAAGGAATTCA+AGG | 0.465642 | 3.1:-13292298 | MS.gene039901:intron |
| AAAATCTGCAAAAGCACGCT+CGG | 0.479534 | 3.1:+13291966 | None:intergenic |
| CGCAAGAAAGCACGCCTGAA+AGG | 0.485077 | 3.1:+13292556 | None:intergenic |
| CAGGCGTGCTTTCTTGCGTA+GGG | 0.486252 | 3.1:-13292551 | MS.gene039901:CDS |
| TAATGACCAGGTAGTTTACA+TGG | 0.487275 | 3.1:-13292610 | MS.gene039901:intron |
| GGTAGTTTACATGGCTTTGG+TGG | 0.498163 | 3.1:-13292601 | MS.gene039901:CDS |
| AATAAGCAGACCAAAGAGTT+CGG | 0.506651 | 3.1:+13294118 | None:intergenic |
| GGAAGTTCATGATGACCAAA+TGG | 0.507403 | 3.1:+13291923 | None:intergenic |
| TGTCTTCACTGCCCTCATCC+AGG | 0.517420 | 3.1:-13293971 | MS.gene039901:intron |
| GGAAAGGAAGTACCTGGATG+AGG | 0.534843 | 3.1:+13293959 | None:intergenic |
| AGAAAGCACGCCTGAAAGGA+AGG | 0.554097 | 3.1:+13292560 | None:intergenic |
| AAATCTGCAAAAGCACGCTC+GGG | 0.559759 | 3.1:+13291967 | None:intergenic |
| GTAGGGACTGCAGTTCTCGC+TGG | 0.561141 | 3.1:-13292534 | MS.gene039901:intron |
| CCAAGTGAATAAAGAGAACA+AGG | 0.563011 | 3.1:-13292307 | MS.gene039901:CDS |
| GATGGTGAAGTCTACTGCTA+AGG | 0.589667 | 3.1:-13294157 | MS.gene039901:CDS |
| GAAAGGAAGTACCTGGATGA+GGG | 0.591104 | 3.1:+13293960 | None:intergenic |
| GTAGTTTACATGGCTTTGGT+GGG | 0.595250 | 3.1:-13292600 | MS.gene039901:CDS |
| GAAGAACCTTGAGATTTGTG+GGG | 0.625990 | 3.1:+13294088 | None:intergenic |
| AAGAACCTTGAGATTTGTGG+GGG | 0.626942 | 3.1:+13294089 | None:intergenic |
| ACATGAACCCAATTTAACCA+AGG | 0.672277 | 3.1:+13291902 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTAAATTAGAATAAAAA+AGG | + | chr3.1:13293295-13293314 | None:intergenic | 10.0% |
| !! | AAGAAAACCTAAAAATATTA+CGG | + | chr3.1:13293886-13293905 | None:intergenic | 15.0% |
| !!! | GTTTTTAAAAAATTAGACTT+GGG | + | chr3.1:13293321-13293340 | None:intergenic | 15.0% |
| !!! | TACAAGTGAAATTAATATTT+TGG | - | chr3.1:13293347-13293366 | MS.gene039901:intron | 15.0% |
| !!! | TGTTTTTAAAAAATTAGACT+TGG | + | chr3.1:13293322-13293341 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAGAGCAAGT+AGG | + | chr3.1:13293391-13293410 | None:intergenic | 20.0% |
| !! | AGAAAACCTAAAAATATTAC+GGG | + | chr3.1:13293885-13293904 | None:intergenic | 20.0% |
| !! | AGTAAGATTAAAAAATTGGA+GGG | + | chr3.1:13293255-13293274 | None:intergenic | 20.0% |
| !! | GTAGAGTAAGATTAAAAAAT+TGG | + | chr3.1:13293259-13293278 | None:intergenic | 20.0% |
| !!! | AAATCAATCTTTGATTTTTG+TGG | - | chr3.1:13292203-13292222 | MS.gene039901:intron | 20.0% |
| !!! | ACTAATCTGATAATGATATT+CGG | + | chr3.1:13292234-13292253 | None:intergenic | 20.0% |
| !!! | GAAATTAATATTTTGGTGAA+GGG | - | chr3.1:13293354-13293373 | MS.gene039901:intron | 20.0% |
| !!! | TGAAATTAATATTTTGGTGA+AGG | - | chr3.1:13293353-13293372 | MS.gene039901:intron | 20.0% |
| !!! | TTGGTATTTCATTTTAATAC+AGG | - | chr3.1:13294073-13294092 | MS.gene039901:intron | 20.0% |
| ! | AACTCCTAATTCCTAATTAA+TGG | + | chr3.1:13293022-13293041 | None:intergenic | 25.0% |
| ! | ATGAAGAGTTCTATGATATT+TGG | + | chr3.1:13293151-13293170 | None:intergenic | 25.0% |
| ! | GAAATGAAGAAATAATGTGT+TGG | - | chr3.1:13294015-13294034 | MS.gene039901:intron | 25.0% |
| ! | GAGTAAGATTAAAAAATTGG+AGG | + | chr3.1:13293256-13293275 | None:intergenic | 25.0% |
| ! | TAAAAAAGGATAGTATCATC+TGG | + | chr3.1:13293281-13293300 | None:intergenic | 25.0% |
| ! | TATATGCAATAACATGTGTT+TGG | + | chr3.1:13292396-13292415 | None:intergenic | 25.0% |
| ! | TTGTATTAATGTCATTAGTC+TGG | - | chr3.1:13293917-13293936 | MS.gene039901:intron | 25.0% |
| !! | ATCTAGATAACAGTTTCTTT+TGG | + | chr3.1:13292524-13292543 | None:intergenic | 25.0% |
| !! | GATTGATTTACTAATGTTAC+AGG | + | chr3.1:13292192-13292211 | None:intergenic | 25.0% |
| !! | TCTAGATAACAGTTTCTTTT+GGG | + | chr3.1:13292523-13292542 | None:intergenic | 25.0% |
| !! | TTTCAACCCGTAATATTTTT+AGG | - | chr3.1:13293876-13293895 | MS.gene039901:intron | 25.0% |
| !! | TTTTCATTTTCTTAATGACC+AGG | - | chr3.1:13293449-13293468 | MS.gene039901:intron | 25.0% |
| !!! | ATATTTTTGTAGAAATGCAG+AGG | + | chr3.1:13292018-13292037 | None:intergenic | 25.0% |
| !!! | TATTTTTGTAGAAATGCAGA+GGG | + | chr3.1:13292017-13292036 | None:intergenic | 25.0% |
| AAAACAAAGTTAACTTCCAC+GGG | - | chr3.1:13292744-13292763 | MS.gene039901:intron | 30.0% | |
| AAAGTTGCATGGATAGTTAT+AGG | + | chr3.1:13293859-13293878 | None:intergenic | 30.0% | |
| AAGTAAGATCACAATTGTTG+TGG | + | chr3.1:13293195-13293214 | None:intergenic | 30.0% | |
| AATTCACCAAATCATCTTGA+AGG | - | chr3.1:13292624-13292643 | MS.gene039901:intron | 30.0% | |
| ACAAACTGGTCAAAAAATGA+AGG | + | chr3.1:13293736-13293755 | None:intergenic | 30.0% | |
| ATATACCTGAATACGCTATA+GGG | - | chr3.1:13292850-13292869 | MS.gene039901:intron | 30.0% | |
| ATCTTGAAGGAAGTAGATTA+GGG | - | chr3.1:13292637-13292656 | MS.gene039901:intron | 30.0% | |
| CAAAACAAAGTTAACTTCCA+CGG | - | chr3.1:13292743-13292762 | MS.gene039901:intron | 30.0% | |
| CCAAAATAAAACAGCTGATT+TGG | + | chr3.1:13292257-13292276 | None:intergenic | 30.0% | |
| CTTTATGTGTGTTGTGTAAT+TGG | + | chr3.1:13292500-13292519 | None:intergenic | 30.0% | |
| GATACATTCTTACAGGTAAT+TGG | - | chr3.1:13294054-13294073 | MS.gene039901:intron | 30.0% | |
| TAAAGAGAACAAGGAATTCA+AGG | - | chr3.1:13293773-13293792 | MS.gene039901:intron | 30.0% | |
| TAGTTTCAATGCTTAGACAA+TGG | - | chr3.1:13292321-13292340 | MS.gene039901:CDS | 30.0% | |
| TTAGAAATTGATGCAAGGAA+AGG | + | chr3.1:13292131-13292150 | None:intergenic | 30.0% | |
| TTCACTTGATACATTCTTAC+AGG | - | chr3.1:13294047-13294066 | MS.gene039901:intron | 30.0% | |
| ! | AATCTGATAATGATATTCGG+AGG | + | chr3.1:13292231-13292250 | None:intergenic | 30.0% |
| ! | GATCTTTAGAAATTGATGCA+AGG | + | chr3.1:13292136-13292155 | None:intergenic | 30.0% |
| ! | TTTGGTTACTGTTTGATGAT+TGG | - | chr3.1:13292272-13292291 | MS.gene039901:intron | 30.0% |
| !! | ATCATTGATTTGAGATCAGA+CGG | - | chr3.1:13293056-13293075 | MS.gene039901:intron | 30.0% |
| !!! | AGTTAACTTTGTTTTGCTGT+CGG | + | chr3.1:13292739-13292758 | None:intergenic | 30.0% |
| !!! | ATATTTTGGTGAAGGGTTAA+AGG | - | chr3.1:13293361-13293380 | MS.gene039901:intron | 30.0% |
| !!! | CCAAATCAGCTGTTTTATTT+TGG | - | chr3.1:13292254-13292273 | MS.gene039901:intron | 30.0% |
| !!! | GTTTTTTGGATTAGGATTCT+TGG | + | chr3.1:13293114-13293133 | None:intergenic | 30.0% |
| AAACTTATGCATACGAACCT+AGG | + | chr3.1:13293692-13293711 | None:intergenic | 35.0% | |
| AATAAGCAGACCAAAGAGTT+CGG | + | chr3.1:13291956-13291975 | None:intergenic | 35.0% | |
| ACTGGTCAAAAAATGAAGGA+TGG | + | chr3.1:13293732-13293751 | None:intergenic | 35.0% | |
| ATGTCTGGAAGGATATTATC+TGG | + | chr3.1:13293220-13293239 | None:intergenic | 35.0% | |
| ATTCCTCAATAATGTCTGGA+AGG | + | chr3.1:13293231-13293250 | None:intergenic | 35.0% | |
| CAGATTTGTGAAGTAACTTC+TGG | + | chr3.1:13292446-13292465 | None:intergenic | 35.0% | |
| CATCTTGAAGGAAGTAGATT+AGG | - | chr3.1:13292636-13292655 | MS.gene039901:intron | 35.0% | |
| CCAAGTGAATAAAGAGAACA+AGG | - | chr3.1:13293764-13293783 | MS.gene039901:intron | 35.0% | |
| CCAGCCATTAATTAGGAATT+AGG | - | chr3.1:13293015-13293034 | MS.gene039901:intron | 35.0% | |
| CCTAATTCCTAATTAATGGC+TGG | + | chr3.1:13293018-13293037 | None:intergenic | 35.0% | |
| CCTTGTTCTCTTTATTCACT+TGG | + | chr3.1:13293767-13293786 | None:intergenic | 35.0% | |
| CTAAATGAAAAGCCAAAGCA+GGG | + | chr3.1:13292054-13292073 | None:intergenic | 35.0% | |
| CTACTTCCTTCAAGATGATT+TGG | + | chr3.1:13292633-13292652 | None:intergenic | 35.0% | |
| CTTGACTGAACAAAGTAGAA+AGG | - | chr3.1:13293993-13294012 | MS.gene039901:CDS | 35.0% | |
| GAACTATTGTATCTGAACCT+AGG | + | chr3.1:13293662-13293681 | None:intergenic | 35.0% | |
| GATATACCTGAATACGCTAT+AGG | - | chr3.1:13292849-13292868 | MS.gene039901:intron | 35.0% | |
| GTGAATCGAATAGGTTACAT+AGG | + | chr3.1:13292707-13292726 | None:intergenic | 35.0% | |
| GTTATCTTAATCCATCCAGA+GGG | - | chr3.1:13292947-13292966 | MS.gene039901:intron | 35.0% | |
| TAATGACCAGGTAGTTTACA+TGG | - | chr3.1:13293461-13293480 | MS.gene039901:intron | 35.0% | |
| TATCCTTCCAGACATTATTG+AGG | - | chr3.1:13293225-13293244 | MS.gene039901:intron | 35.0% | |
| TCTAAATGAAAAGCCAAAGC+AGG | + | chr3.1:13292055-13292074 | None:intergenic | 35.0% | |
| TCTCTTTATTCACTTGGATC+CGG | + | chr3.1:13293761-13293780 | None:intergenic | 35.0% | |
| TGCAGGAAATGCAAATGTAT+AGG | - | chr3.1:13292797-13292816 | MS.gene039901:intron | 35.0% | |
| TGTGACACGGTAAATAATCT+GGG | + | chr3.1:13293082-13293101 | None:intergenic | 35.0% | |
| TGTTATCTTAATCCATCCAG+AGG | - | chr3.1:13292946-13292965 | MS.gene039901:intron | 35.0% | |
| TTGGCATTAAATGTGTGACA+CGG | + | chr3.1:13293095-13293114 | None:intergenic | 35.0% | |
| ! | AGATTTTGTTCTGTGCAATG+TGG | - | chr3.1:13294121-13294140 | MS.gene039901:CDS | 35.0% |
| ! | TTACTGTTTGATGATTGGAG+TGG | - | chr3.1:13292277-13292296 | MS.gene039901:intron | 35.0% |
| !! | ACAATAGTTCTAATCTGCCT+AGG | - | chr3.1:13293642-13293661 | MS.gene039901:intron | 35.0% |
| !! | TATTTTTGCTAACCCTGCTT+TGG | - | chr3.1:13292039-13292058 | MS.gene039901:intron | 35.0% |
| !!! | TTTTTTGACCAGTTTGTCTC+CGG | - | chr3.1:13293739-13293758 | MS.gene039901:intron | 35.0% |
| AAGAACCTTGAGATTTGTGG+GGG | + | chr3.1:13291985-13292004 | None:intergenic | 40.0% | |
| AAGATCTTCTCCGAACTCTT+TGG | - | chr3.1:13291943-13291962 | MS.gene039901:CDS | 40.0% | |
| AATCCAAAAAACTGCCTCAC+TGG | - | chr3.1:13293122-13293141 | MS.gene039901:intron | 40.0% | |
| AATTAATGGCTGGCAGGTAA+CGG | + | chr3.1:13293008-13293027 | None:intergenic | 40.0% | |
| AGGAAGAACCTTGAGATTTG+TGG | + | chr3.1:13291988-13292007 | None:intergenic | 40.0% | |
| ATAAAATATCCCAGCTGGCA+AGG | + | chr3.1:13292886-13292905 | None:intergenic | 40.0% | |
| ATATCCGCAATCGCATATTC+TGG | + | chr3.1:13292834-13292853 | None:intergenic | 40.0% | |
| ATCGAATAGGTTACATAGGC+AGG | + | chr3.1:13292703-13292722 | None:intergenic | 40.0% | |
| ATGATATTTGGACTCCAGTG+AGG | + | chr3.1:13293139-13293158 | None:intergenic | 40.0% | |
| ATGCACTAGAAACATGGACA+TGG | - | chr3.1:13292470-13292489 | MS.gene039901:intron | 40.0% | |
| ATTCCTAATTAATGGCTGGC+AGG | + | chr3.1:13293014-13293033 | None:intergenic | 40.0% | |
| CCATTTAACTCCTTCCTTTC+AGG | - | chr3.1:13293501-13293520 | MS.gene039901:intron | 40.0% | |
| CCTCTTTCTTCCTTTGCTTT+GGG | - | chr3.1:13292915-13292934 | MS.gene039901:intron | 40.0% | |
| CCTGAAAGGAAGGAGTTAAA+TGG | + | chr3.1:13293504-13293523 | None:intergenic | 40.0% | |
| CTCACATAAAATATCCCAGC+TGG | + | chr3.1:13292891-13292910 | None:intergenic | 40.0% | |
| CTTAGACAATGGTAGCATTG+GGG | - | chr3.1:13292332-13292351 | MS.gene039901:intron | 40.0% | |
| GAAGAACCTTGAGATTTGTG+GGG | + | chr3.1:13291986-13292005 | None:intergenic | 40.0% | |
| GCTTAGACAATGGTAGCATT+GGG | - | chr3.1:13292331-13292350 | MS.gene039901:intron | 40.0% | |
| GGAAATGAATGGAATGGCAT+TGG | + | chr3.1:13292986-13293005 | None:intergenic | 40.0% | |
| GGAAGAACCTTGAGATTTGT+GGG | + | chr3.1:13291987-13292006 | None:intergenic | 40.0% | |
| GGAAGTTCATGATGACCAAA+TGG | + | chr3.1:13294151-13294170 | None:intergenic | 40.0% | |
| GGGAATTCCTCAATAATGTC+TGG | + | chr3.1:13293235-13293254 | None:intergenic | 40.0% | |
| GTGTGACACGGTAAATAATC+TGG | + | chr3.1:13293083-13293102 | None:intergenic | 40.0% | |
| GTGTGCATAAATTGCATAGC+TGG | + | chr3.1:13293598-13293617 | None:intergenic | 40.0% | |
| TAAAATATCCCAGCTGGCAA+GGG | + | chr3.1:13292885-13292904 | None:intergenic | 40.0% | |
| TATCCGCAATCGCATATTCT+GGG | + | chr3.1:13292833-13292852 | None:intergenic | 40.0% | |
| TGACATTGTGCTGAATTTCC+CGG | - | chr3.1:13292419-13292438 | MS.gene039901:intron | 40.0% | |
| TGCAGAATGCACTAGAAACA+TGG | - | chr3.1:13292464-13292483 | MS.gene039901:intron | 40.0% | |
| TGCGTGCAATTTCTAATGCA+AGG | + | chr3.1:13292548-13292567 | None:intergenic | 40.0% | |
| TGCTTAGACAATGGTAGCAT+TGG | - | chr3.1:13292330-13292349 | MS.gene039901:intron | 40.0% | |
| TTACCTGCCAGCCATTAATT+AGG | - | chr3.1:13293008-13293027 | MS.gene039901:intron | 40.0% | |
| TTCGACCAATGATTCGAGAT+TGG | - | chr3.1:13292587-13292606 | MS.gene039901:CDS | 40.0% | |
| TTGGTCATCATGAACTTCCT+TGG | - | chr3.1:13294152-13294171 | MS.gene039901:CDS | 40.0% | |
| TTGTGAAGTAACTTCTGGAC+CGG | + | chr3.1:13292441-13292460 | None:intergenic | 40.0% | |
| TTTGGTGAAGGGTTAAAGGT+TGG | - | chr3.1:13293365-13293384 | MS.gene039901:intron | 40.0% | |
| ! | AAAATCTGCAAAAGCACGCT+CGG | + | chr3.1:13294108-13294127 | None:intergenic | 40.0% |
| ! | ATTACGGGTTGAAAGTTGCA+TGG | + | chr3.1:13293870-13293889 | None:intergenic | 40.0% |
| ! | GCGAGTTCTCATACATTTTC+TGG | + | chr3.1:13292676-13292695 | None:intergenic | 40.0% |
| ! | GTAACGGGAAATGAATGGAA+TGG | + | chr3.1:13292992-13293011 | None:intergenic | 40.0% |
| !! | AATGGAATGGCATTGGCTTA+TGG | + | chr3.1:13292979-13292998 | None:intergenic | 40.0% |
| !! | ATGGAATGGCATTGGCTTAT+GGG | + | chr3.1:13292978-13292997 | None:intergenic | 40.0% |
| !! | GTAGTTTACATGGCTTTGGT+GGG | - | chr3.1:13293471-13293490 | MS.gene039901:intron | 40.0% |
| !!! | GTGAGGCAGTTTTTTGGATT+AGG | + | chr3.1:13293122-13293141 | None:intergenic | 40.0% |
| AGAAATGCAGAGGGAAAGAG+AGG | + | chr3.1:13292008-13292027 | None:intergenic | 45.0% | |
| ATAGGTTACATAGGCAGGAC+AGG | + | chr3.1:13292698-13292717 | None:intergenic | 45.0% | |
| ATCAGCCCTATAGCGTATTC+AGG | + | chr3.1:13292858-13292877 | None:intergenic | 45.0% | |
| ATTAATGGCTGGCAGGTAAC+GGG | + | chr3.1:13293007-13293026 | None:intergenic | 45.0% | |
| CCAAAGCCATGTAAACTACC+TGG | + | chr3.1:13293470-13293489 | None:intergenic | 45.0% | |
| CCAGGTAGTTTACATGGCTT+TGG | - | chr3.1:13293467-13293486 | MS.gene039901:intron | 45.0% | |
| CCCAAAGCAAAGGAAGAAAG+AGG | + | chr3.1:13292918-13292937 | None:intergenic | 45.0% | |
| GCAAATGTATAGGCTGCACA+TGG | - | chr3.1:13292807-13292826 | MS.gene039901:intron | 45.0% | |
| GCCTCTTTCTTCCTTTGCTT+TGG | - | chr3.1:13292914-13292933 | MS.gene039901:intron | 45.0% | |
| GCTCACCAATCTCGAATCAT+TGG | + | chr3.1:13292595-13292614 | None:intergenic | 45.0% | |
| GGATCTGCATCAAAGGGAAA+TGG | - | chr3.1:13292765-13292784 | MS.gene039901:intron | 45.0% | |
| GGGTGGAAGAAACTCTTATC+TGG | - | chr3.1:13292352-13292371 | MS.gene039901:intron | 45.0% | |
| TGAAGGAAGTAGATTAGGGC+AGG | - | chr3.1:13292641-13292660 | MS.gene039901:intron | 45.0% | |
| TGTGAAGTAACTTCTGGACC+GGG | + | chr3.1:13292440-13292459 | None:intergenic | 45.0% | |
| TTGCATTTCCTGCAATGTCC+AGG | + | chr3.1:13292791-13292810 | None:intergenic | 45.0% | |
| ! | AAATCTGCAAAAGCACGCTC+GGG | + | chr3.1:13294107-13294126 | None:intergenic | 45.0% |
| !! | ATGCAAGGAAAGGAAGTACC+TGG | + | chr3.1:13292121-13292140 | None:intergenic | 45.0% |
| !! | GAAAGGAAGTACCTGGATGA+GGG | + | chr3.1:13292114-13292133 | None:intergenic | 45.0% |
| !! | GGTAGTTTACATGGCTTTGG+TGG | - | chr3.1:13293470-13293489 | MS.gene039901:intron | 45.0% |
| !! | TGGAATGGCATTGGCTTATG+GGG | + | chr3.1:13292977-13292996 | None:intergenic | 45.0% |
| !!! | ACTCCAGTGAGGCAGTTTTT+TGG | + | chr3.1:13293128-13293147 | None:intergenic | 45.0% |
| !!! | TTTGTTTTGCTGTCGGACCA+GGG | + | chr3.1:13292732-13292751 | None:intergenic | 45.0% |
| ACCAGGGGAGTGAATCGAAT+AGG | + | chr3.1:13292716-13292735 | None:intergenic | 50.0% | |
| ACCTATTCGATTCACTCCCC+TGG | - | chr3.1:13292712-13292731 | MS.gene039901:intron | 50.0% | |
| ACTTGGATCCGGAGACAAAC+TGG | + | chr3.1:13293750-13293769 | None:intergenic | 50.0% | |
| CACAATTGTTGTGGTGCTCG+AGG | + | chr3.1:13293186-13293205 | None:intergenic | 50.0% | |
| GTGCAATGTGGTGCTCCATT+TGG | - | chr3.1:13294133-13294152 | MS.gene039901:CDS | 50.0% | |
| TCCACGGGATCTGCATCAAA+GGG | - | chr3.1:13292759-13292778 | MS.gene039901:intron | 50.0% | |
| TGATCTTTCCCTTGCCAGCT+GGG | - | chr3.1:13292874-13292893 | MS.gene039901:intron | 50.0% | |
| TGCAACCCCCACAAATCTCA+AGG | - | chr3.1:13291977-13291996 | MS.gene039901:CDS | 50.0% | |
| TGCATCAAAGGGAAATGGCC+TGG | - | chr3.1:13292770-13292789 | MS.gene039901:intron | 50.0% | |
| TGGCCCAGAATATGCGATTG+CGG | - | chr3.1:13292827-13292846 | MS.gene039901:intron | 50.0% | |
| TTCCACGGGATCTGCATCAA+AGG | - | chr3.1:13292758-13292777 | MS.gene039901:intron | 50.0% | |
| ! | AGAAAGCACGCCTGAAAGGA+AGG | + | chr3.1:13293514-13293533 | None:intergenic | 50.0% |
| ! | AGACAATGGTAGCATTGGGG+TGG | - | chr3.1:13292335-13292354 | MS.gene039901:intron | 50.0% |
| !! | GGAAAGGAAGTACCTGGATG+AGG | + | chr3.1:13292115-13292134 | None:intergenic | 50.0% |
| !! | GGCAGGTAACGGGAAATGAA+TGG | + | chr3.1:13292997-13293016 | None:intergenic | 50.0% |
| !! | TCTTCCTTTGCTTTGGGACG+AGG | - | chr3.1:13292921-13292940 | MS.gene039901:intron | 50.0% |
| !! | TTGTTTTGCTGTCGGACCAG+GGG | + | chr3.1:13292731-13292750 | None:intergenic | 50.0% |
| !!! | CTTTGTTTTGCTGTCGGACC+AGG | + | chr3.1:13292733-13292752 | None:intergenic | 50.0% |
| CAGACCTCGTCCCAAAGCAA+AGG | + | chr3.1:13292928-13292947 | None:intergenic | 55.0% | |
| CAGGCGTGCTTTCTTGCGTA+GGG | - | chr3.1:13293520-13293539 | MS.gene039901:intron | 55.0% | |
| CTGATCTTTCCCTTGCCAGC+TGG | - | chr3.1:13292873-13292892 | MS.gene039901:intron | 55.0% | |
| CTGCAGTTCTCGCTGGTAAG+TGG | - | chr3.1:13293544-13293563 | MS.gene039901:intron | 55.0% | |
| GGAAATGGCCTGGACATTGC+AGG | - | chr3.1:13292780-13292799 | MS.gene039901:intron | 55.0% | |
| TCAGGCGTGCTTTCTTGCGT+AGG | - | chr3.1:13293519-13293538 | MS.gene039901:intron | 55.0% | |
| TCCCTTTGATGCAGATCCCG+TGG | + | chr3.1:13292763-13292782 | None:intergenic | 55.0% | |
| TGTCTTCACTGCCCTCATCC+AGG | - | chr3.1:13292100-13292119 | MS.gene039901:intron | 55.0% | |
| ! | CGCAAGAAAGCACGCCTGAA+AGG | + | chr3.1:13293518-13293537 | None:intergenic | 55.0% |
| GTAGGGACTGCAGTTCTCGC+TGG | - | chr3.1:13293537-13293556 | MS.gene039901:intron | 60.0% | |
| ! | TATGGGGCACTCCCTCTGGA+TGG | + | chr3.1:13292961-13292980 | None:intergenic | 60.0% |
| ! | GGCTTATGGGGCACTCCCTC+TGG | + | chr3.1:13292965-13292984 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 13291915 | 13294178 | 13291915 | ID=MS.gene039901 |
| chr3.1 | mRNA | 13291915 | 13294178 | 13291915 | ID=MS.gene039901.t1;Parent=MS.gene039901 |
| chr3.1 | exon | 13294095 | 13294178 | 13294095 | ID=MS.gene039901.t1.exon1;Parent=MS.gene039901.t1 |
| chr3.1 | CDS | 13294095 | 13294178 | 13294095 | ID=cds.MS.gene039901.t1;Parent=MS.gene039901.t1 |
| chr3.1 | exon | 13293972 | 13294019 | 13293972 | ID=MS.gene039901.t1.exon2;Parent=MS.gene039901.t1 |
| chr3.1 | CDS | 13293972 | 13294019 | 13293972 | ID=cds.MS.gene039901.t1;Parent=MS.gene039901.t1 |
| chr3.1 | exon | 13292535 | 13292622 | 13292535 | ID=MS.gene039901.t1.exon3;Parent=MS.gene039901.t1 |
| chr3.1 | CDS | 13292535 | 13292622 | 13292535 | ID=cds.MS.gene039901.t1;Parent=MS.gene039901.t1 |
| chr3.1 | exon | 13292299 | 13292342 | 13292299 | ID=MS.gene039901.t1.exon4;Parent=MS.gene039901.t1 |
| chr3.1 | CDS | 13292299 | 13292342 | 13292299 | ID=cds.MS.gene039901.t1;Parent=MS.gene039901.t1 |
| chr3.1 | exon | 13291915 | 13291998 | 13291915 | ID=MS.gene039901.t1.exon5;Parent=MS.gene039901.t1 |
| chr3.1 | CDS | 13291915 | 13291998 | 13291915 | ID=cds.MS.gene039901.t1;Parent=MS.gene039901.t1 |
| Gene Sequence |
| Protein sequence |
