Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057988.t1 | XP_003598897.1 | 98.3 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 9.20E-55 | 222.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057988.t1 | Q39080 | 90.4 | 115 | 11 | 0 | 1 | 115 | 1 | 115 | 8.2e-52 | 204.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057988.t1 | G7J1N4 | 98.3 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 6.6e-55 | 222.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053224 | MS.gene057988 | 0.813592 | 2.37E-51 | -1.69E-46 |
| MS.gene057988 | MS.gene057990 | 0.943452 | 1.17E-102 | -1.69E-46 |
| MS.gene057988 | MS.gene34372 | 0.814209 | 1.73E-51 | -1.69E-46 |
| MS.gene057988 | MS.gene40797 | 0.811323 | 7.41E-51 | -1.69E-46 |
| MS.gene057988 | MS.gene50921 | 0.973694 | 7.28E-137 | -1.69E-46 |
| MS.gene057988 | MS.gene50925 | 0.982162 | 2.18E-154 | -1.69E-46 |
| MS.gene057988 | MS.gene55890 | 0.822221 | 2.66E-53 | -1.69E-46 |
| MS.gene057988 | MS.gene66273 | 0.81717 | 3.79E-52 | -1.69E-46 |
| MS.gene057988 | MS.gene68832 | 0.80886 | 2.52E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene34049 | MS.gene057988 | PPI |
| MS.gene057988 | MS.gene37721 | PPI |
| MS.gene057988 | MS.gene45709 | PPI |
| MS.gene057988 | MS.gene039901 | PPI |
| MS.gene057988 | MS.gene064868 | PPI |
| MS.gene05210 | MS.gene057988 | PPI |
| MS.gene014310 | MS.gene057988 | PPI |
| MS.gene056676 | MS.gene057988 | PPI |
| MS.gene057988 | MS.gene66827 | PPI |
| MS.gene014312 | MS.gene057988 | PPI |
| MS.gene057988 | MS.gene57836 | PPI |
| MS.gene057988 | MS.gene50052 | PPI |
| MS.gene039903 | MS.gene057988 | PPI |
| MS.gene003786 | MS.gene057988 | PPI |
| MS.gene057988 | MS.gene50024 | PPI |
| MS.gene001011 | MS.gene057988 | PPI |
| MS.gene005960 | MS.gene057988 | PPI |
| MS.gene057988 | MS.gene057990 | PPI |
| MS.gene057988 | MS.gene54807 | PPI |
| MS.gene057990 | MS.gene057988 | PPI |
| MS.gene50925 | MS.gene057988 | PPI |
| MS.gene057988 | MS.gene069988 | PPI |
| MS.gene50921 | MS.gene057988 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057988.t1 | MTR_3g023120 | 98.261 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 3.12e-81 | 233 |
| MS.gene057988.t1 | MTR_5g029240 | 93.694 | 111 | 7 | 0 | 5 | 115 | 14 | 124 | 8.59e-74 | 215 |
| MS.gene057988.t1 | MTR_3g023120 | 97.727 | 88 | 2 | 0 | 1 | 88 | 1 | 88 | 1.30e-59 | 178 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057988.t1 | AT1G32210 | 90.435 | 115 | 11 | 0 | 1 | 115 | 1 | 115 | 2.03e-74 | 216 |
| MS.gene057988.t1 | AT2G35520 | 86.957 | 115 | 15 | 0 | 1 | 115 | 1 | 115 | 2.63e-71 | 208 |
| MS.gene057988.t1 | AT2G35520 | 86.957 | 115 | 15 | 0 | 1 | 115 | 1 | 115 | 2.63e-71 | 208 |
| MS.gene057988.t1 | AT2G35520 | 86.207 | 116 | 15 | 1 | 1 | 115 | 1 | 116 | 1.58e-69 | 204 |
| MS.gene057988.t1 | AT1G32210 | 90.909 | 88 | 8 | 0 | 1 | 88 | 1 | 88 | 1.10e-53 | 164 |
Find 31 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTAACTCCTTCCTTTC+AGG | 0.114983 | 3.4:-14583608 | MS.gene057988:CDS |
| TTGCGTAGGGACTGCAGTTC+TGG | 0.282207 | 3.4:-14583576 | MS.gene057988:CDS |
| TTGGTGATCATGAACTTTCT+TGG | 0.304837 | 3.4:-14583042 | MS.gene057988:CDS |
| CCTTGTTCTCTTTATTCACT+TGG | 0.305994 | 3.4:+14583368 | None:intergenic |
| CCTGAAAGGAAGGAGTTAAA+TGG | 0.336746 | 3.4:+14583608 | None:intergenic |
| AAGATCTTCTCCGCACTCTT+TGG | 0.356756 | 3.4:-14585030 | MS.gene057988:CDS |
| CTGCAATGTGGTGCTCCATT+TGG | 0.370798 | 3.4:-14583061 | MS.gene057988:CDS |
| CCAGGTAGTTTACATGGCTT+TGG | 0.389862 | 3.4:-14583642 | MS.gene057988:intron |
| TCTCTTTATTCACTTGGATC+CGG | 0.452230 | 3.4:+14583374 | None:intergenic |
| AAAATCTGCAAAAGCGCGCT+CGG | 0.463481 | 3.4:+14583089 | None:intergenic |
| TAAAGAGAACAAGGAATTCA+AGG | 0.465642 | 3.4:-14583359 | MS.gene057988:intron |
| AGGAACAACCTTGAGATTTG+TGG | 0.468795 | 3.4:+14584988 | None:intergenic |
| TGTCTTCACTGCCCTCCTCC+AGG | 0.470127 | 3.4:-14584873 | MS.gene057988:intron |
| GGAACAACCTTGAGATTTGT+GGG | 0.478791 | 3.4:+14584989 | None:intergenic |
| TAATGACCAGGTAGTTTACA+TGG | 0.487275 | 3.4:-14583648 | MS.gene057988:intron |
| TCAGGCGTACTTTCTTGCGT+AGG | 0.489843 | 3.4:-14583590 | MS.gene057988:CDS |
| CAGGCGTACTTTCTTGCGTA+GGG | 0.494144 | 3.4:-14583589 | MS.gene057988:CDS |
| AAATCTGCAAAAGCGCGCTC+GGG | 0.496102 | 3.4:+14583090 | None:intergenic |
| GGTAGTTTACATGGCTTTGG+TGG | 0.498163 | 3.4:-14583639 | MS.gene057988:CDS |
| CGCAAGAAAGTACGCCTGAA+AGG | 0.506042 | 3.4:+14583594 | None:intergenic |
| GAAAGTTCATGATCACCAAA+TGG | 0.518501 | 3.4:+14583046 | None:intergenic |
| GGAAAGGAAGTACCTGGAGG+AGG | 0.546155 | 3.4:+14584861 | None:intergenic |
| GTAGGGACTGCAGTTCTGGC+TGG | 0.550415 | 3.4:-14583572 | MS.gene057988:intron |
| AGAAAGTACGCCTGAAAGGA+AGG | 0.558835 | 3.4:+14583598 | None:intergenic |
| CCAAGTGAATAAAGAGAACA+AGG | 0.563011 | 3.4:-14583368 | MS.gene057988:CDS |
| GAAAGGAAGTACCTGGAGGA+GGG | 0.586265 | 3.4:+14584862 | None:intergenic |
| GATGGTGAAGTCTACTGCTA+AGG | 0.589667 | 3.4:-14585059 | MS.gene057988:CDS |
| GTAGTTTACATGGCTTTGGT+GGG | 0.595250 | 3.4:-14583638 | MS.gene057988:CDS |
| AACAACCTTGAGATTTGTGG+GGG | 0.618905 | 3.4:+14584991 | None:intergenic |
| GAACAACCTTGAGATTTGTG+GGG | 0.633022 | 3.4:+14584990 | None:intergenic |
| AATAAGCAGACCAAAGAGTG+CGG | 0.691016 | 3.4:+14585020 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTAAAAAATTAGACTT+GGG | + | chr3.4:14584294-14584313 | None:intergenic | 15.0% |
| !!! | TACAAGTGAAATTAATATTT+TGG | - | chr3.4:14584320-14584339 | MS.gene057988:intron | 15.0% |
| !!! | TGTTTTTAAAAAATTAGACT+TGG | + | chr3.4:14584295-14584314 | None:intergenic | 15.0% |
| !! | AATTCCTAATTCCTAATTAA+TGG | + | chr3.4:14583996-14584015 | None:intergenic | 20.0% |
| !! | TCATTAAACTAGAATCTAAA+AGG | + | chr3.4:14584268-14584287 | None:intergenic | 20.0% |
| !! | TTGTATTAATGTCATTATTC+TGG | - | chr3.4:14584825-14584844 | MS.gene057988:intron | 20.0% |
| !!! | AAATCAATCTTTGATTTTTG+TGG | - | chr3.4:14583326-14583345 | MS.gene057988:intron | 20.0% |
| !!! | GAAATTAATATTTTGGTGAT+GGG | - | chr3.4:14584327-14584346 | MS.gene057988:intron | 20.0% |
| !!! | TGAAATTAATATTTTGGTGA+TGG | - | chr3.4:14584326-14584345 | MS.gene057988:intron | 20.0% |
| ! | AACATCATAATACACAAGAA+AGG | + | chr3.4:14584770-14584789 | None:intergenic | 25.0% |
| ! | AAGATACAAGAAATATTCAG+AGG | + | chr3.4:14584876-14584895 | None:intergenic | 25.0% |
| ! | ACAAACTGGTTAAAAAATAG+AGG | + | chr3.4:14584700-14584719 | None:intergenic | 25.0% |
| ! | ACTAATCTGATCATGATATT+CGG | + | chr3.4:14583357-14583376 | None:intergenic | 25.0% |
| ! | AGAGTAAGATTAAAAATTGG+AGG | + | chr3.4:14584230-14584249 | None:intergenic | 25.0% |
| ! | ATGATTGGTATTTCATATAC+AGG | - | chr3.4:14584975-14584994 | MS.gene057988:intron | 25.0% |
| ! | CTTTATGTGTGTTATGTAAT+TGG | + | chr3.4:14583533-14583552 | None:intergenic | 25.0% |
| ! | GAGTAAGATTAAAAATTGGA+GGG | + | chr3.4:14584229-14584248 | None:intergenic | 25.0% |
| ! | GGTAGAGTAAGATTAAAAAT+TGG | + | chr3.4:14584233-14584252 | None:intergenic | 25.0% |
| ! | TATATGCAATAACATGTGTT+TGG | + | chr3.4:14583429-14583448 | None:intergenic | 25.0% |
| ! | TCTAAAAGGATAGTATTATC+TGG | + | chr3.4:14584254-14584273 | None:intergenic | 25.0% |
| ! | TGCAGGAAATACAAATATAT+AGG | - | chr3.4:14583831-14583850 | MS.gene057988:intron | 25.0% |
| !! | ATCTAGATAACAGTTTCTTT+TGG | + | chr3.4:14583557-14583576 | None:intergenic | 25.0% |
| !! | GATTGATTTACTAATGTTAC+AGG | + | chr3.4:14583315-14583334 | None:intergenic | 25.0% |
| !! | TCTAGATAACAGTTTCTTTT+GGG | + | chr3.4:14583556-14583575 | None:intergenic | 25.0% |
| !! | TTTTCATTTTCTTAATGACC+AGG | - | chr3.4:14584436-14584455 | MS.gene057988:intron | 25.0% |
| !!! | ATATTTTTGTAGAAATGCAG+AGG | + | chr3.4:14583141-14583160 | None:intergenic | 25.0% |
| !!! | TATTTTTGTAGAAATGCAGA+GGG | + | chr3.4:14583140-14583159 | None:intergenic | 25.0% |
| AAAACAAAGTTAACTTCCAC+GGG | - | chr3.4:14583777-14583796 | MS.gene057988:intron | 30.0% | |
| AAACTTATGCATATGAACCT+AGG | + | chr3.4:14584647-14584666 | None:intergenic | 30.0% | |
| AAGTAAGATCACAAATGTTG+TGG | + | chr3.4:14584169-14584188 | None:intergenic | 30.0% | |
| AATTCACCAAATCATCTTGA+AGG | - | chr3.4:14583657-14583676 | MS.gene057988:intron | 30.0% | |
| ACTGGTTAAAAAATAGAGGA+TGG | + | chr3.4:14584696-14584715 | None:intergenic | 30.0% | |
| ATCTTGAAGGAAGTAGATTA+GGG | - | chr3.4:14583670-14583689 | MS.gene057988:intron | 30.0% | |
| ATGTCTGGAAGGATATTATT+TGG | + | chr3.4:14584194-14584213 | None:intergenic | 30.0% | |
| CAAAACAAAGTTAACTTCCA+CGG | - | chr3.4:14583776-14583795 | MS.gene057988:intron | 30.0% | |
| CTTGACTGAACAAAATAGAA+AGG | - | chr3.4:14584899-14584918 | MS.gene057988:CDS | 30.0% | |
| GAAATGATGAAACAATGTGT+TGG | - | chr3.4:14584921-14584940 | MS.gene057988:intron | 30.0% | |
| GATAGATTCTTACAGATGAT+TGG | - | chr3.4:14584960-14584979 | MS.gene057988:intron | 30.0% | |
| GTGAAGAGTTCTATGATATT+TGG | + | chr3.4:14584125-14584144 | None:intergenic | 30.0% | |
| TAAAGAGAACAAGGAATTCA+AGG | - | chr3.4:14584737-14584756 | MS.gene057988:intron | 30.0% | |
| TTAGAAATTGAAGCAAGGAA+AGG | + | chr3.4:14583254-14583273 | None:intergenic | 30.0% | |
| ! | GATCTTTAGAAATTGAAGCA+AGG | + | chr3.4:14583259-14583278 | None:intergenic | 30.0% |
| !! | ATCATTGATTTGAGATCAGA+CGG | - | chr3.4:14584030-14584049 | MS.gene057988:intron | 30.0% |
| !!! | AGTTAACTTTGTTTTGCTGA+CGG | + | chr3.4:14583772-14583791 | None:intergenic | 30.0% |
| !!! | ATATTTTGGTGATGGGTTAA+AGG | - | chr3.4:14584334-14584353 | MS.gene057988:intron | 30.0% |
| !!! | TTTTTTAACCAGTTTGTCTC+CGG | - | chr3.4:14584703-14584722 | MS.gene057988:intron | 30.0% |
| AATCTGATCATGATATTCGG+AGG | + | chr3.4:14583354-14583373 | None:intergenic | 35.0% | |
| ACAAATATATAGGCTGCACA+TGG | - | chr3.4:14583841-14583860 | MS.gene057988:intron | 35.0% | |
| ATTCCTCAATAATGTCTGGA+AGG | + | chr3.4:14584205-14584224 | None:intergenic | 35.0% | |
| CAGATTTGTGAAGTAACTTC+TGG | + | chr3.4:14583479-14583498 | None:intergenic | 35.0% | |
| CATCTTGAAGGAAGTAGATT+AGG | - | chr3.4:14583669-14583688 | MS.gene057988:intron | 35.0% | |
| CCAAGTGAATAAAGAGAACA+AGG | - | chr3.4:14584728-14584747 | MS.gene057988:intron | 35.0% | |
| CCAGCCATTAATTAGGAATT+AGG | - | chr3.4:14583989-14584008 | MS.gene057988:intron | 35.0% | |
| CCTAATTCCTAATTAATGGC+TGG | + | chr3.4:14583992-14584011 | None:intergenic | 35.0% | |
| CCTTGTTCTCTTTATTCACT+TGG | + | chr3.4:14584731-14584750 | None:intergenic | 35.0% | |
| CTAAATGAAAAGCCAAAGCA+GGG | + | chr3.4:14583177-14583196 | None:intergenic | 35.0% | |
| CTACTTCCTTCAAGATGATT+TGG | + | chr3.4:14583666-14583685 | None:intergenic | 35.0% | |
| GAAAGTTCATGATCACCAAA+TGG | + | chr3.4:14585053-14585072 | None:intergenic | 35.0% | |
| GTGAATCGAATAGGTTACAT+AGG | + | chr3.4:14583740-14583759 | None:intergenic | 35.0% | |
| TAACTTCAACATCAACCTAC+TGG | + | chr3.4:14584364-14584383 | None:intergenic | 35.0% | |
| TAATGACCAGGTAGTTTACA+TGG | - | chr3.4:14584448-14584467 | MS.gene057988:intron | 35.0% | |
| TATCCTTCCAGACATTATTG+AGG | - | chr3.4:14584199-14584218 | MS.gene057988:intron | 35.0% | |
| TCTAAATGAAAAGCCAAAGC+AGG | + | chr3.4:14583178-14583197 | None:intergenic | 35.0% | |
| TCTCTTTATTCACTTGGATC+CGG | + | chr3.4:14584725-14584744 | None:intergenic | 35.0% | |
| TGTGACACGGTAAATAATCT+GGG | + | chr3.4:14584056-14584075 | None:intergenic | 35.0% | |
| TTACTTCACAAATCTGCAGA+AGG | - | chr3.4:14583483-14583502 | MS.gene057988:intron | 35.0% | |
| TTGGCATTAAATGTGTGACA+CGG | + | chr3.4:14584069-14584088 | None:intergenic | 35.0% | |
| ! | AGATTTTGTTCTCTGCAATG+TGG | - | chr3.4:14585023-14585042 | MS.gene057988:CDS | 35.0% |
| ! | GATCAGATTAGTCCAAATCA+GGG | - | chr3.4:14583365-14583384 | MS.gene057988:CDS | 35.0% |
| ! | GTTTCTTGGATTAGGATTCT+TGG | + | chr3.4:14584088-14584107 | None:intergenic | 35.0% |
| ! | TGATCAGATTAGTCCAAATC+AGG | - | chr3.4:14583364-14583383 | MS.gene057988:CDS | 35.0% |
| ! | TTGGTGATCATGAACTTTCT+TGG | - | chr3.4:14585054-14585073 | MS.gene057988:CDS | 35.0% |
| !! | ACAATAGTTCTAATCTGCCT+AGG | - | chr3.4:14584627-14584646 | MS.gene057988:intron | 35.0% |
| !! | GATGATTTGGTGAATTGTGA+TGG | + | chr3.4:14583653-14583672 | None:intergenic | 35.0% |
| !! | TATTTTTGCTAACCCTGCTT+TGG | - | chr3.4:14583162-14583181 | MS.gene057988:intron | 35.0% |
| AACAACCTTGAGATTTGTGG+GGG | + | chr3.4:14583108-14583127 | None:intergenic | 40.0% | |
| AATAAGCAGACCAAAGAGTG+CGG | + | chr3.4:14583079-14583098 | None:intergenic | 40.0% | |
| AGGAACAACCTTGAGATTTG+TGG | + | chr3.4:14583111-14583130 | None:intergenic | 40.0% | |
| ATAAAATATCCCAGCTGGCA+AGG | + | chr3.4:14583920-14583939 | None:intergenic | 40.0% | |
| ATATACCTGAATACGCTAGG+GGG | - | chr3.4:14583884-14583903 | MS.gene057988:intron | 40.0% | |
| ATATCCGCAATCGCATATTC+TGG | + | chr3.4:14583868-14583887 | None:intergenic | 40.0% | |
| ATCGAATAGGTTACATAGGC+AGG | + | chr3.4:14583736-14583755 | None:intergenic | 40.0% | |
| ATGATATTTGGACTCCAGTG+AGG | + | chr3.4:14584113-14584132 | None:intergenic | 40.0% | |
| ATTCCTAATTAATGGCTGGC+AGG | + | chr3.4:14583988-14584007 | None:intergenic | 40.0% | |
| CCATTTAACTCCTTCCTTTC+AGG | - | chr3.4:14584488-14584507 | MS.gene057988:intron | 40.0% | |
| CCTCTTTCTTCCTTTGCTTT+GGG | - | chr3.4:14583949-14583968 | MS.gene057988:intron | 40.0% | |
| CCTGAAAGGAAGGAGTTAAA+TGG | + | chr3.4:14584491-14584510 | None:intergenic | 40.0% | |
| CTCACATAAAATATCCCAGC+TGG | + | chr3.4:14583925-14583944 | None:intergenic | 40.0% | |
| GAACAACCTTGAGATTTGTG+GGG | + | chr3.4:14583109-14583128 | None:intergenic | 40.0% | |
| GATATACCTGAATACGCTAG+GGG | - | chr3.4:14583883-14583902 | MS.gene057988:intron | 40.0% | |
| GCAAGTTCTCATACATTTCC+TGG | + | chr3.4:14583709-14583728 | None:intergenic | 40.0% | |
| GGAACAACCTTGAGATTTGT+GGG | + | chr3.4:14583110-14583129 | None:intergenic | 40.0% | |
| GGATATACCTGAATACGCTA+GGG | - | chr3.4:14583882-14583901 | MS.gene057988:intron | 40.0% | |
| GGGAATTCCTCAATAATGTC+TGG | + | chr3.4:14584209-14584228 | None:intergenic | 40.0% | |
| GTGTGACACGGTAAATAATC+TGG | + | chr3.4:14584057-14584076 | None:intergenic | 40.0% | |
| GTGTGCATAAATTGCATAGC+TGG | + | chr3.4:14584585-14584604 | None:intergenic | 40.0% | |
| TAAAATATCCCAGCTGGCAA+GGG | + | chr3.4:14583919-14583938 | None:intergenic | 40.0% | |
| TATCCGCAATCGCATATTCT+GGG | + | chr3.4:14583867-14583886 | None:intergenic | 40.0% | |
| TGACATTGTGCTGAATTTCC+CGG | - | chr3.4:14583452-14583471 | MS.gene057988:intron | 40.0% | |
| TGCGTGCAATTTCTAATGCA+AGG | + | chr3.4:14583581-14583600 | None:intergenic | 40.0% | |
| TTACCTGCCAGCCATTAATT+AGG | - | chr3.4:14583982-14584001 | MS.gene057988:intron | 40.0% | |
| TTCGACCAATGATTCGAGAT+TGG | - | chr3.4:14583620-14583639 | MS.gene057988:CDS | 40.0% | |
| TTGTATTTCCTGCAATGTCC+AGG | + | chr3.4:14583825-14583844 | None:intergenic | 40.0% | |
| TTGTGAAGTAACTTCTGGAC+CGG | + | chr3.4:14583474-14583493 | None:intergenic | 40.0% | |
| !! | GTAGTTTACATGGCTTTGGT+GGG | - | chr3.4:14584458-14584477 | MS.gene057988:intron | 40.0% |
| AAGATCTTCTCCGCACTCTT+TGG | - | chr3.4:14583066-14583085 | MS.gene057988:CDS | 45.0% | |
| AATCCAAGAAACTGCCTCAC+TGG | - | chr3.4:14584096-14584115 | MS.gene057988:intron | 45.0% | |
| ACCAGGAGAGTGAATCGAAT+AGG | + | chr3.4:14583749-14583768 | None:intergenic | 45.0% | |
| ACCTATTCGATTCACTCTCC+TGG | - | chr3.4:14583745-14583764 | MS.gene057988:intron | 45.0% | |
| AGAAATGCAGAGGGAAAGAG+AGG | + | chr3.4:14583131-14583150 | None:intergenic | 45.0% | |
| AGGCACTAGAAACATGGACA+CGG | - | chr3.4:14583503-14583522 | MS.gene057988:intron | 45.0% | |
| ATAGGTTACATAGGCAGGAC+AGG | + | chr3.4:14583731-14583750 | None:intergenic | 45.0% | |
| ATTAATGGCTGGCAGGTAAC+AGG | + | chr3.4:14583981-14584000 | None:intergenic | 45.0% | |
| CACAAATGTTGTGGTGATCG+AGG | + | chr3.4:14584160-14584179 | None:intergenic | 45.0% | |
| CCAAAGCCATGTAAACTACC+TGG | + | chr3.4:14584457-14584476 | None:intergenic | 45.0% | |
| CCAGGTAGTTTACATGGCTT+TGG | - | chr3.4:14584454-14584473 | MS.gene057988:intron | 45.0% | |
| CCCAAAGCAAAGGAAGAAAG+AGG | + | chr3.4:14583952-14583971 | None:intergenic | 45.0% | |
| CGGATATACCTGAATACGCT+AGG | - | chr3.4:14583881-14583900 | MS.gene057988:intron | 45.0% | |
| GAGTTTCTTCCACCCTGATT+TGG | + | chr3.4:14583380-14583399 | None:intergenic | 45.0% | |
| GATCTGCCATCGAAAGGAAA+TGG | - | chr3.4:14583799-14583818 | MS.gene057988:intron | 45.0% | |
| GCCTCTTTCTTCCTTTGCTT+TGG | - | chr3.4:14583948-14583967 | MS.gene057988:intron | 45.0% | |
| GCTCACCAATCTCGAATCAT+TGG | + | chr3.4:14583628-14583647 | None:intergenic | 45.0% | |
| GGGTGGAAGAAACTCTTATC+TGG | - | chr3.4:14583385-14583404 | MS.gene057988:intron | 45.0% | |
| GTGAGGCAGTTTCTTGGATT+AGG | + | chr3.4:14584096-14584115 | None:intergenic | 45.0% | |
| TGAAGGAAGTAGATTAGGGC+AGG | - | chr3.4:14583674-14583693 | MS.gene057988:intron | 45.0% | |
| TGTGAAGTAACTTCTGGACC+GGG | + | chr3.4:14583473-14583492 | None:intergenic | 45.0% | |
| ! | AAAATCTGCAAAAGCGCGCT+CGG | + | chr3.4:14585010-14585029 | None:intergenic | 45.0% |
| ! | AGAAAGTACGCCTGAAAGGA+AGG | + | chr3.4:14584501-14584520 | None:intergenic | 45.0% |
| ! | CAGATTAGTCCAAATCAGGG+TGG | - | chr3.4:14583368-14583387 | MS.gene057988:CDS | 45.0% |
| ! | TGGGTTAAAGGTTAGCCAGT+AGG | - | chr3.4:14584346-14584365 | MS.gene057988:intron | 45.0% |
| !! | AAGCAAGGAAAGGAAGTACC+TGG | + | chr3.4:14583244-14583263 | None:intergenic | 45.0% |
| !! | GGTAGTTTACATGGCTTTGG+TGG | - | chr3.4:14584457-14584476 | MS.gene057988:intron | 45.0% |
| !! | TGCAGAAGGCACTAGAAACA+TGG | - | chr3.4:14583497-14583516 | MS.gene057988:intron | 45.0% |
| ACTCCAGTGAGGCAGTTTCT+TGG | + | chr3.4:14584102-14584121 | None:intergenic | 50.0% | |
| ACTTGGATCCGGAGACAAAC+TGG | + | chr3.4:14584714-14584733 | None:intergenic | 50.0% | |
| CAGGCGTACTTTCTTGCGTA+GGG | - | chr3.4:14584507-14584526 | MS.gene057988:intron | 50.0% | |
| CTGCAATGTGGTGCTCCATT+TGG | - | chr3.4:14585035-14585054 | MS.gene057988:CDS | 50.0% | |
| TCAGGCGTACTTTCTTGCGT+AGG | - | chr3.4:14584506-14584525 | MS.gene057988:intron | 50.0% | |
| TCCAGGCCATTTCCTTTCGA+TGG | + | chr3.4:14583808-14583827 | None:intergenic | 50.0% | |
| TGATCTTTCCCTTGCCAGCT+GGG | - | chr3.4:14583908-14583927 | MS.gene057988:intron | 50.0% | |
| TGCAACCCCCACAAATCTCA+AGG | - | chr3.4:14583100-14583119 | MS.gene057988:CDS | 50.0% | |
| TGGCCCAGAATATGCGATTG+CGG | - | chr3.4:14583861-14583880 | MS.gene057988:intron | 50.0% | |
| ! | AAATCTGCAAAAGCGCGCTC+GGG | + | chr3.4:14585009-14585028 | None:intergenic | 50.0% |
| ! | CGCAAGAAAGTACGCCTGAA+AGG | + | chr3.4:14584505-14584524 | None:intergenic | 50.0% |
| !! | CAAGGAAAGGAAGTACCTGG+AGG | + | chr3.4:14583241-14583260 | None:intergenic | 50.0% |
| !! | GAAAGGAAGTACCTGGAGGA+GGG | + | chr3.4:14583237-14583256 | None:intergenic | 50.0% |
| !! | TCTTCCTTTGCTTTGGGACG+AGG | - | chr3.4:14583955-14583974 | MS.gene057988:intron | 50.0% |
| !!! | CTTTGTTTTGCTGACGGACC+AGG | + | chr3.4:14583766-14583785 | None:intergenic | 50.0% |
| ATCAGCCCCCTAGCGTATTC+AGG | + | chr3.4:14583892-14583911 | None:intergenic | 55.0% | |
| CTGATCTTTCCCTTGCCAGC+TGG | - | chr3.4:14583907-14583926 | MS.gene057988:intron | 55.0% | |
| GCCATCGAAAGGAAATGGCC+TGG | - | chr3.4:14583804-14583823 | MS.gene057988:intron | 55.0% | |
| GGAAATGGCCTGGACATTGC+AGG | - | chr3.4:14583814-14583833 | MS.gene057988:intron | 55.0% | |
| TTGCGTAGGGACTGCAGTTC+TGG | - | chr3.4:14584520-14584539 | MS.gene057988:intron | 55.0% | |
| !! | GGAAAGGAAGTACCTGGAGG+AGG | + | chr3.4:14583238-14583257 | None:intergenic | 55.0% |
| CAGGCCTCGTCCCAAAGCAA+AGG | + | chr3.4:14583962-14583981 | None:intergenic | 60.0% | |
| CCACGGGATCTGCCATCGAA+AGG | - | chr3.4:14583793-14583812 | MS.gene057988:intron | 60.0% | |
| CCTTTCGATGGCAGATCCCG+TGG | + | chr3.4:14583796-14583815 | None:intergenic | 60.0% | |
| TGTCTTCACTGCCCTCCTCC+AGG | - | chr3.4:14583223-14583242 | MS.gene057988:intron | 60.0% | |
| ! | GTAGGGACTGCAGTTCTGGC+TGG | - | chr3.4:14584524-14584543 | MS.gene057988:intron | 60.0% |
| TAGGGCAGGCTAACAGCGCC+AGG | - | chr3.4:14583688-14583707 | MS.gene057988:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 14583038 | 14585080 | 14583038 | ID=MS.gene057988 |
| chr3.4 | mRNA | 14583038 | 14585080 | 14583038 | ID=MS.gene057988.t1;Parent=MS.gene057988 |
| chr3.4 | exon | 14584997 | 14585080 | 14584997 | ID=MS.gene057988.t1.exon1;Parent=MS.gene057988.t1 |
| chr3.4 | CDS | 14584997 | 14585080 | 14584997 | ID=cds.MS.gene057988.t1;Parent=MS.gene057988.t1 |
| chr3.4 | exon | 14584874 | 14584921 | 14584874 | ID=MS.gene057988.t1.exon2;Parent=MS.gene057988.t1 |
| chr3.4 | CDS | 14584874 | 14584921 | 14584874 | ID=cds.MS.gene057988.t1;Parent=MS.gene057988.t1 |
| chr3.4 | exon | 14583573 | 14583660 | 14583573 | ID=MS.gene057988.t1.exon3;Parent=MS.gene057988.t1 |
| chr3.4 | CDS | 14583573 | 14583660 | 14583573 | ID=cds.MS.gene057988.t1;Parent=MS.gene057988.t1 |
| chr3.4 | exon | 14583360 | 14583403 | 14583360 | ID=MS.gene057988.t1.exon4;Parent=MS.gene057988.t1 |
| chr3.4 | CDS | 14583360 | 14583403 | 14583360 | ID=cds.MS.gene057988.t1;Parent=MS.gene057988.t1 |
| chr3.4 | exon | 14583038 | 14583121 | 14583038 | ID=MS.gene057988.t1.exon5;Parent=MS.gene057988.t1 |
| chr3.4 | CDS | 14583038 | 14583121 | 14583038 | ID=cds.MS.gene057988.t1;Parent=MS.gene057988.t1 |
| Gene Sequence |
| Protein sequence |
