Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039903.t1 | XP_003598897.1 | 99.1 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 5.40E-55 | 223.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039903.t1 | Q39080 | 91.3 | 115 | 10 | 0 | 1 | 115 | 1 | 115 | 4.8e-52 | 204.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039903.t1 | G7J1N4 | 99.1 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 3.9e-55 | 223.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene039903 | MS.gene54807 | PPI |
| MS.gene039903 | MS.gene014310 | PPI |
| MS.gene039903 | MS.gene056676 | PPI |
| MS.gene039903 | MS.gene069988 | PPI |
| MS.gene039903 | MS.gene34049 | PPI |
| MS.gene039903 | MS.gene37721 | PPI |
| MS.gene001011 | MS.gene039903 | PPI |
| MS.gene039903 | MS.gene45709 | PPI |
| MS.gene039903 | MS.gene039901 | PPI |
| MS.gene039903 | MS.gene064868 | PPI |
| MS.gene039903 | MS.gene057988 | PPI |
| MS.gene003786 | MS.gene039903 | PPI |
| MS.gene039903 | MS.gene66827 | PPI |
| MS.gene039903 | MS.gene57836 | PPI |
| MS.gene039903 | MS.gene50052 | PPI |
| MS.gene005960 | MS.gene039903 | PPI |
| MS.gene039903 | MS.gene50024 | PPI |
| MS.gene50925 | MS.gene039903 | PPI |
| MS.gene039903 | MS.gene014312 | PPI |
| MS.gene50921 | MS.gene039903 | PPI |
| MS.gene039903 | MS.gene057990 | PPI |
| MS.gene05210 | MS.gene039903 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039903.t1 | MTR_3g023120 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 1.40e-81 | 234 |
| MS.gene039903.t1 | MTR_5g029240 | 92.793 | 111 | 8 | 0 | 5 | 115 | 14 | 124 | 1.96e-73 | 214 |
| MS.gene039903.t1 | MTR_3g023120 | 98.864 | 88 | 1 | 0 | 1 | 88 | 1 | 88 | 5.05e-60 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039903.t1 | AT1G32210 | 91.304 | 115 | 10 | 0 | 1 | 115 | 1 | 115 | 6.62e-75 | 218 |
| MS.gene039903.t1 | AT2G35520 | 87.826 | 115 | 14 | 0 | 1 | 115 | 1 | 115 | 8.22e-72 | 209 |
| MS.gene039903.t1 | AT2G35520 | 87.826 | 115 | 14 | 0 | 1 | 115 | 1 | 115 | 8.22e-72 | 209 |
| MS.gene039903.t1 | AT2G35520 | 87.069 | 116 | 14 | 1 | 1 | 115 | 1 | 116 | 4.87e-70 | 205 |
| MS.gene039903.t1 | AT1G32210 | 92.045 | 88 | 7 | 0 | 1 | 88 | 1 | 88 | 4.49e-54 | 164 |
Find 31 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTAACTCCTTCCTTTC+AGG | 0.114983 | 3.1:-13304585 | MS.gene039903:CDS |
| CCTTGTTCTCTTTATTCACT+TGG | 0.305994 | 3.1:+13304322 | None:intergenic |
| AAGATCTTCTCCGAACTCTT+TGG | 0.343348 | 3.1:-13306143 | MS.gene039903:CDS |
| CCTGAAAGGAAGGAGTTAAA+TGG | 0.359284 | 3.1:+13304585 | None:intergenic |
| CCAGGTAGTTTACATGGCTT+TGG | 0.389862 | 3.1:-13304619 | MS.gene039903:intron |
| TTGGTCATCATGAACTTCCT+TGG | 0.439540 | 3.1:-13303934 | MS.gene039903:CDS |
| GTGCAATGTGGTGCTCCATT+TGG | 0.442688 | 3.1:-13303953 | MS.gene039903:CDS |
| AGGAAGAACCTTGAGATTTG+TGG | 0.450140 | 3.1:+13306101 | None:intergenic |
| TCAGGCGTGCTTTCTTGCGT+AGG | 0.450212 | 3.1:-13304567 | MS.gene039903:CDS |
| TCTCTTTATTCACTTGGATC+CGG | 0.452230 | 3.1:+13304328 | None:intergenic |
| GGAAGAACCTTGAGATTTGT+GGG | 0.462343 | 3.1:+13306102 | None:intergenic |
| TAAAGAGAACAAGGAATTCA+AGG | 0.465642 | 3.1:-13304313 | MS.gene039903:intron |
| AAAATCTGCAAAAGCACGCT+CGG | 0.479534 | 3.1:+13303981 | None:intergenic |
| CGCAAGAAAGCACGCCTGAA+AGG | 0.485077 | 3.1:+13304571 | None:intergenic |
| CAGGCGTGCTTTCTTGCGTA+GGG | 0.486252 | 3.1:-13304566 | MS.gene039903:CDS |
| TAATGACCAGGTAGTTTACA+TGG | 0.487275 | 3.1:-13304625 | MS.gene039903:intron |
| GGTAGTTTACATGGCTTTGG+TGG | 0.498163 | 3.1:-13304616 | MS.gene039903:CDS |
| AATAAGCAGACCAAAGAGTT+CGG | 0.506651 | 3.1:+13306133 | None:intergenic |
| GGAAGTTCATGATGACCAAA+TGG | 0.507403 | 3.1:+13303938 | None:intergenic |
| TGTCTTCACTGCCCTCATCC+AGG | 0.517420 | 3.1:-13305986 | MS.gene039903:intron |
| GGAAAGGAAGTACCTGGATG+AGG | 0.534843 | 3.1:+13305974 | None:intergenic |
| AGAAAGCACGCCTGAAAGGA+AGG | 0.554097 | 3.1:+13304575 | None:intergenic |
| AAATCTGCAAAAGCACGCTC+GGG | 0.559759 | 3.1:+13303982 | None:intergenic |
| GTAGGGACTGCAGTTCTCGC+TGG | 0.561141 | 3.1:-13304549 | MS.gene039903:intron |
| CCAAGTGAATAAAGAGAACA+AGG | 0.563011 | 3.1:-13304322 | MS.gene039903:CDS |
| GATGGTGAAGTCTACTGCTA+AGG | 0.589667 | 3.1:-13306172 | MS.gene039903:CDS |
| GAAAGGAAGTACCTGGATGA+GGG | 0.591104 | 3.1:+13305975 | None:intergenic |
| GTAGTTTACATGGCTTTGGT+GGG | 0.595250 | 3.1:-13304615 | MS.gene039903:CDS |
| GAAGAACCTTGAGATTTGTG+GGG | 0.625990 | 3.1:+13306103 | None:intergenic |
| AAGAACCTTGAGATTTGTGG+GGG | 0.626942 | 3.1:+13306104 | None:intergenic |
| ACATGAACCCAATTTAACCA+AGG | 0.672277 | 3.1:+13303917 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTAAATTAGAATAAAAA+AGG | + | chr3.1:13305310-13305329 | None:intergenic | 10.0% |
| !! | AAGAAAACCTAAAAATATTA+CGG | + | chr3.1:13305901-13305920 | None:intergenic | 15.0% |
| !!! | GTTTTTAAAAAATTAGACTT+GGG | + | chr3.1:13305336-13305355 | None:intergenic | 15.0% |
| !!! | TACAAGTGAAATTAATATTT+TGG | - | chr3.1:13305362-13305381 | MS.gene039903:intron | 15.0% |
| !!! | TGTTTTTAAAAAATTAGACT+TGG | + | chr3.1:13305337-13305356 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAGAGCAAGT+AGG | + | chr3.1:13305406-13305425 | None:intergenic | 20.0% |
| !! | AGAAAACCTAAAAATATTAC+GGG | + | chr3.1:13305900-13305919 | None:intergenic | 20.0% |
| !! | AGTAAGATTAAAAAATTGGA+GGG | + | chr3.1:13305270-13305289 | None:intergenic | 20.0% |
| !! | GTAGAGTAAGATTAAAAAAT+TGG | + | chr3.1:13305274-13305293 | None:intergenic | 20.0% |
| !!! | AAATCAATCTTTGATTTTTG+TGG | - | chr3.1:13304218-13304237 | MS.gene039903:intron | 20.0% |
| !!! | ACTAATCTGATAATGATATT+CGG | + | chr3.1:13304249-13304268 | None:intergenic | 20.0% |
| !!! | GAAATTAATATTTTGGTGAA+GGG | - | chr3.1:13305369-13305388 | MS.gene039903:intron | 20.0% |
| !!! | TGAAATTAATATTTTGGTGA+AGG | - | chr3.1:13305368-13305387 | MS.gene039903:intron | 20.0% |
| !!! | TTGGTATTTCATTTTAATAC+AGG | - | chr3.1:13306088-13306107 | MS.gene039903:intron | 20.0% |
| ! | AACTCCTAATTCCTAATTAA+TGG | + | chr3.1:13305037-13305056 | None:intergenic | 25.0% |
| ! | ATGAAGAGTTCTATGATATT+TGG | + | chr3.1:13305166-13305185 | None:intergenic | 25.0% |
| ! | GAAATGAAGAAATAATGTGT+TGG | - | chr3.1:13306030-13306049 | MS.gene039903:intron | 25.0% |
| ! | GAGTAAGATTAAAAAATTGG+AGG | + | chr3.1:13305271-13305290 | None:intergenic | 25.0% |
| ! | TAAAAAAGGATAGTATCATC+TGG | + | chr3.1:13305296-13305315 | None:intergenic | 25.0% |
| ! | TATATGCAATAACATGTGTT+TGG | + | chr3.1:13304411-13304430 | None:intergenic | 25.0% |
| ! | TTGTATTAATGTCATTAGTC+TGG | - | chr3.1:13305932-13305951 | MS.gene039903:intron | 25.0% |
| !! | ATCTAGATAACAGTTTCTTT+TGG | + | chr3.1:13304539-13304558 | None:intergenic | 25.0% |
| !! | GATTGATTTACTAATGTTAC+AGG | + | chr3.1:13304207-13304226 | None:intergenic | 25.0% |
| !! | TCTAGATAACAGTTTCTTTT+GGG | + | chr3.1:13304538-13304557 | None:intergenic | 25.0% |
| !! | TTTCAACCCGTAATATTTTT+AGG | - | chr3.1:13305891-13305910 | MS.gene039903:intron | 25.0% |
| !! | TTTTCATTTTCTTAATGACC+AGG | - | chr3.1:13305464-13305483 | MS.gene039903:intron | 25.0% |
| !!! | ATATTTTTGTAGAAATGCAG+AGG | + | chr3.1:13304033-13304052 | None:intergenic | 25.0% |
| !!! | TATTTTTGTAGAAATGCAGA+GGG | + | chr3.1:13304032-13304051 | None:intergenic | 25.0% |
| AAAACAAAGTTAACTTCCAC+GGG | - | chr3.1:13304759-13304778 | MS.gene039903:intron | 30.0% | |
| AAAGTTGCATGGATAGTTAT+AGG | + | chr3.1:13305874-13305893 | None:intergenic | 30.0% | |
| AAGTAAGATCACAATTGTTG+TGG | + | chr3.1:13305210-13305229 | None:intergenic | 30.0% | |
| AATTCACCAAATCATCTTGA+AGG | - | chr3.1:13304639-13304658 | MS.gene039903:intron | 30.0% | |
| ACAAACTGGTCAAAAAATGA+AGG | + | chr3.1:13305751-13305770 | None:intergenic | 30.0% | |
| ATATACCTGAATACGCTATA+GGG | - | chr3.1:13304865-13304884 | MS.gene039903:intron | 30.0% | |
| ATCTTGAAGGAAGTAGATTA+GGG | - | chr3.1:13304652-13304671 | MS.gene039903:intron | 30.0% | |
| CAAAACAAAGTTAACTTCCA+CGG | - | chr3.1:13304758-13304777 | MS.gene039903:intron | 30.0% | |
| CCAAAATAAAACAGCTGATT+TGG | + | chr3.1:13304272-13304291 | None:intergenic | 30.0% | |
| CTTTATGTGTGTTGTGTAAT+TGG | + | chr3.1:13304515-13304534 | None:intergenic | 30.0% | |
| GATACATTCTTACAGGTAAT+TGG | - | chr3.1:13306069-13306088 | MS.gene039903:intron | 30.0% | |
| TAAAGAGAACAAGGAATTCA+AGG | - | chr3.1:13305788-13305807 | MS.gene039903:intron | 30.0% | |
| TAGTTTCAATGCTTAGACAA+TGG | - | chr3.1:13304336-13304355 | MS.gene039903:CDS | 30.0% | |
| TTAGAAATTGATGCAAGGAA+AGG | + | chr3.1:13304146-13304165 | None:intergenic | 30.0% | |
| TTCACTTGATACATTCTTAC+AGG | - | chr3.1:13306062-13306081 | MS.gene039903:intron | 30.0% | |
| ! | AATCTGATAATGATATTCGG+AGG | + | chr3.1:13304246-13304265 | None:intergenic | 30.0% |
| ! | GATCTTTAGAAATTGATGCA+AGG | + | chr3.1:13304151-13304170 | None:intergenic | 30.0% |
| ! | TTTGGTTACTGTTTGATGAT+TGG | - | chr3.1:13304287-13304306 | MS.gene039903:intron | 30.0% |
| !! | ATCATTGATTTGAGATCAGA+CGG | - | chr3.1:13305071-13305090 | MS.gene039903:intron | 30.0% |
| !!! | AGTTAACTTTGTTTTGCTGT+CGG | + | chr3.1:13304754-13304773 | None:intergenic | 30.0% |
| !!! | ATATTTTGGTGAAGGGTTAA+AGG | - | chr3.1:13305376-13305395 | MS.gene039903:intron | 30.0% |
| !!! | CCAAATCAGCTGTTTTATTT+TGG | - | chr3.1:13304269-13304288 | MS.gene039903:intron | 30.0% |
| !!! | GTTTTTTGGATTAGGATTCT+TGG | + | chr3.1:13305129-13305148 | None:intergenic | 30.0% |
| AAACTTATGCATACGAACCT+AGG | + | chr3.1:13305707-13305726 | None:intergenic | 35.0% | |
| AATAAGCAGACCAAAGAGTT+CGG | + | chr3.1:13303971-13303990 | None:intergenic | 35.0% | |
| ACTGGTCAAAAAATGAAGGA+TGG | + | chr3.1:13305747-13305766 | None:intergenic | 35.0% | |
| ATGTCTGGAAGGATATTATC+TGG | + | chr3.1:13305235-13305254 | None:intergenic | 35.0% | |
| ATTCCTCAATAATGTCTGGA+AGG | + | chr3.1:13305246-13305265 | None:intergenic | 35.0% | |
| CAGATTTGTGAAGTAACTTC+TGG | + | chr3.1:13304461-13304480 | None:intergenic | 35.0% | |
| CATCTTGAAGGAAGTAGATT+AGG | - | chr3.1:13304651-13304670 | MS.gene039903:intron | 35.0% | |
| CCAAGTGAATAAAGAGAACA+AGG | - | chr3.1:13305779-13305798 | MS.gene039903:intron | 35.0% | |
| CCAGCCATTAATTAGGAATT+AGG | - | chr3.1:13305030-13305049 | MS.gene039903:intron | 35.0% | |
| CCTAATTCCTAATTAATGGC+TGG | + | chr3.1:13305033-13305052 | None:intergenic | 35.0% | |
| CCTTGTTCTCTTTATTCACT+TGG | + | chr3.1:13305782-13305801 | None:intergenic | 35.0% | |
| CTAAATGAAAAGCCAAAGCA+GGG | + | chr3.1:13304069-13304088 | None:intergenic | 35.0% | |
| CTACTTCCTTCAAGATGATT+TGG | + | chr3.1:13304648-13304667 | None:intergenic | 35.0% | |
| CTTGACTGAACAAAGTAGAA+AGG | - | chr3.1:13306008-13306027 | MS.gene039903:CDS | 35.0% | |
| GAACTATTGTATCTGAACCT+AGG | + | chr3.1:13305677-13305696 | None:intergenic | 35.0% | |
| GATATACCTGAATACGCTAT+AGG | - | chr3.1:13304864-13304883 | MS.gene039903:intron | 35.0% | |
| GTGAATCGAATAGGTTACAT+AGG | + | chr3.1:13304722-13304741 | None:intergenic | 35.0% | |
| GTTATCTTAATCCATCCAGA+GGG | - | chr3.1:13304962-13304981 | MS.gene039903:intron | 35.0% | |
| TAATGACCAGGTAGTTTACA+TGG | - | chr3.1:13305476-13305495 | MS.gene039903:intron | 35.0% | |
| TATCCTTCCAGACATTATTG+AGG | - | chr3.1:13305240-13305259 | MS.gene039903:intron | 35.0% | |
| TCTAAATGAAAAGCCAAAGC+AGG | + | chr3.1:13304070-13304089 | None:intergenic | 35.0% | |
| TCTCTTTATTCACTTGGATC+CGG | + | chr3.1:13305776-13305795 | None:intergenic | 35.0% | |
| TGCAGGAAATGCAAATGTAT+AGG | - | chr3.1:13304812-13304831 | MS.gene039903:intron | 35.0% | |
| TGTGACACGGTAAATAATCT+GGG | + | chr3.1:13305097-13305116 | None:intergenic | 35.0% | |
| TGTTATCTTAATCCATCCAG+AGG | - | chr3.1:13304961-13304980 | MS.gene039903:intron | 35.0% | |
| TTGGCATTAAATGTGTGACA+CGG | + | chr3.1:13305110-13305129 | None:intergenic | 35.0% | |
| ! | AGATTTTGTTCTGTGCAATG+TGG | - | chr3.1:13306136-13306155 | MS.gene039903:CDS | 35.0% |
| ! | TTACTGTTTGATGATTGGAG+TGG | - | chr3.1:13304292-13304311 | MS.gene039903:intron | 35.0% |
| !! | ACAATAGTTCTAATCTGCCT+AGG | - | chr3.1:13305657-13305676 | MS.gene039903:intron | 35.0% |
| !! | TATTTTTGCTAACCCTGCTT+TGG | - | chr3.1:13304054-13304073 | MS.gene039903:intron | 35.0% |
| !!! | TTTTTTGACCAGTTTGTCTC+CGG | - | chr3.1:13305754-13305773 | MS.gene039903:intron | 35.0% |
| AAGAACCTTGAGATTTGTGG+GGG | + | chr3.1:13304000-13304019 | None:intergenic | 40.0% | |
| AAGATCTTCTCCGAACTCTT+TGG | - | chr3.1:13303958-13303977 | MS.gene039903:CDS | 40.0% | |
| AATCCAAAAAACTGCCTCAC+TGG | - | chr3.1:13305137-13305156 | MS.gene039903:intron | 40.0% | |
| AATTAATGGCTGGCAGGTAA+CGG | + | chr3.1:13305023-13305042 | None:intergenic | 40.0% | |
| AGGAAGAACCTTGAGATTTG+TGG | + | chr3.1:13304003-13304022 | None:intergenic | 40.0% | |
| ATAAAATATCCCAGCTGGCA+AGG | + | chr3.1:13304901-13304920 | None:intergenic | 40.0% | |
| ATATCCGCAATCGCATATTC+TGG | + | chr3.1:13304849-13304868 | None:intergenic | 40.0% | |
| ATCGAATAGGTTACATAGGC+AGG | + | chr3.1:13304718-13304737 | None:intergenic | 40.0% | |
| ATGATATTTGGACTCCAGTG+AGG | + | chr3.1:13305154-13305173 | None:intergenic | 40.0% | |
| ATGCACTAGAAACATGGACA+TGG | - | chr3.1:13304485-13304504 | MS.gene039903:intron | 40.0% | |
| ATTCCTAATTAATGGCTGGC+AGG | + | chr3.1:13305029-13305048 | None:intergenic | 40.0% | |
| CCATTTAACTCCTTCCTTTC+AGG | - | chr3.1:13305516-13305535 | MS.gene039903:intron | 40.0% | |
| CCTCTTTCTTCCTTTGCTTT+GGG | - | chr3.1:13304930-13304949 | MS.gene039903:intron | 40.0% | |
| CCTGAAAGGAAGGAGTTAAA+TGG | + | chr3.1:13305519-13305538 | None:intergenic | 40.0% | |
| CTCACATAAAATATCCCAGC+TGG | + | chr3.1:13304906-13304925 | None:intergenic | 40.0% | |
| CTTAGACAATGGTAGCATTG+GGG | - | chr3.1:13304347-13304366 | MS.gene039903:intron | 40.0% | |
| GAAGAACCTTGAGATTTGTG+GGG | + | chr3.1:13304001-13304020 | None:intergenic | 40.0% | |
| GCTTAGACAATGGTAGCATT+GGG | - | chr3.1:13304346-13304365 | MS.gene039903:intron | 40.0% | |
| GGAAATGAATGGAATGGCAT+TGG | + | chr3.1:13305001-13305020 | None:intergenic | 40.0% | |
| GGAAGAACCTTGAGATTTGT+GGG | + | chr3.1:13304002-13304021 | None:intergenic | 40.0% | |
| GGAAGTTCATGATGACCAAA+TGG | + | chr3.1:13306166-13306185 | None:intergenic | 40.0% | |
| GGGAATTCCTCAATAATGTC+TGG | + | chr3.1:13305250-13305269 | None:intergenic | 40.0% | |
| GTGTGACACGGTAAATAATC+TGG | + | chr3.1:13305098-13305117 | None:intergenic | 40.0% | |
| GTGTGCATAAATTGCATAGC+TGG | + | chr3.1:13305613-13305632 | None:intergenic | 40.0% | |
| TAAAATATCCCAGCTGGCAA+GGG | + | chr3.1:13304900-13304919 | None:intergenic | 40.0% | |
| TATCCGCAATCGCATATTCT+GGG | + | chr3.1:13304848-13304867 | None:intergenic | 40.0% | |
| TGACATTGTGCTGAATTTCC+CGG | - | chr3.1:13304434-13304453 | MS.gene039903:intron | 40.0% | |
| TGCAGAATGCACTAGAAACA+TGG | - | chr3.1:13304479-13304498 | MS.gene039903:intron | 40.0% | |
| TGCGTGCAATTTCTAATGCA+AGG | + | chr3.1:13304563-13304582 | None:intergenic | 40.0% | |
| TGCTTAGACAATGGTAGCAT+TGG | - | chr3.1:13304345-13304364 | MS.gene039903:intron | 40.0% | |
| TTACCTGCCAGCCATTAATT+AGG | - | chr3.1:13305023-13305042 | MS.gene039903:intron | 40.0% | |
| TTCGACCAATGATTCGAGAT+TGG | - | chr3.1:13304602-13304621 | MS.gene039903:CDS | 40.0% | |
| TTGGTCATCATGAACTTCCT+TGG | - | chr3.1:13306167-13306186 | MS.gene039903:CDS | 40.0% | |
| TTGTGAAGTAACTTCTGGAC+CGG | + | chr3.1:13304456-13304475 | None:intergenic | 40.0% | |
| TTTGGTGAAGGGTTAAAGGT+TGG | - | chr3.1:13305380-13305399 | MS.gene039903:intron | 40.0% | |
| ! | AAAATCTGCAAAAGCACGCT+CGG | + | chr3.1:13306123-13306142 | None:intergenic | 40.0% |
| ! | ATTACGGGTTGAAAGTTGCA+TGG | + | chr3.1:13305885-13305904 | None:intergenic | 40.0% |
| ! | GCGAGTTCTCATACATTTTC+TGG | + | chr3.1:13304691-13304710 | None:intergenic | 40.0% |
| ! | GTAACGGGAAATGAATGGAA+TGG | + | chr3.1:13305007-13305026 | None:intergenic | 40.0% |
| !! | AATGGAATGGCATTGGCTTA+TGG | + | chr3.1:13304994-13305013 | None:intergenic | 40.0% |
| !! | ATGGAATGGCATTGGCTTAT+GGG | + | chr3.1:13304993-13305012 | None:intergenic | 40.0% |
| !! | GTAGTTTACATGGCTTTGGT+GGG | - | chr3.1:13305486-13305505 | MS.gene039903:intron | 40.0% |
| !!! | GTGAGGCAGTTTTTTGGATT+AGG | + | chr3.1:13305137-13305156 | None:intergenic | 40.0% |
| AGAAATGCAGAGGGAAAGAG+AGG | + | chr3.1:13304023-13304042 | None:intergenic | 45.0% | |
| ATAGGTTACATAGGCAGGAC+AGG | + | chr3.1:13304713-13304732 | None:intergenic | 45.0% | |
| ATCAGCCCTATAGCGTATTC+AGG | + | chr3.1:13304873-13304892 | None:intergenic | 45.0% | |
| ATTAATGGCTGGCAGGTAAC+GGG | + | chr3.1:13305022-13305041 | None:intergenic | 45.0% | |
| CCAAAGCCATGTAAACTACC+TGG | + | chr3.1:13305485-13305504 | None:intergenic | 45.0% | |
| CCAGGTAGTTTACATGGCTT+TGG | - | chr3.1:13305482-13305501 | MS.gene039903:intron | 45.0% | |
| CCCAAAGCAAAGGAAGAAAG+AGG | + | chr3.1:13304933-13304952 | None:intergenic | 45.0% | |
| GCAAATGTATAGGCTGCACA+TGG | - | chr3.1:13304822-13304841 | MS.gene039903:intron | 45.0% | |
| GCCTCTTTCTTCCTTTGCTT+TGG | - | chr3.1:13304929-13304948 | MS.gene039903:intron | 45.0% | |
| GCTCACCAATCTCGAATCAT+TGG | + | chr3.1:13304610-13304629 | None:intergenic | 45.0% | |
| GGATCTGCATCAAAGGGAAA+TGG | - | chr3.1:13304780-13304799 | MS.gene039903:intron | 45.0% | |
| GGGTGGAAGAAACTCTTATC+TGG | - | chr3.1:13304367-13304386 | MS.gene039903:intron | 45.0% | |
| TGAAGGAAGTAGATTAGGGC+AGG | - | chr3.1:13304656-13304675 | MS.gene039903:intron | 45.0% | |
| TGTGAAGTAACTTCTGGACC+GGG | + | chr3.1:13304455-13304474 | None:intergenic | 45.0% | |
| TTGCATTTCCTGCAATGTCC+AGG | + | chr3.1:13304806-13304825 | None:intergenic | 45.0% | |
| ! | AAATCTGCAAAAGCACGCTC+GGG | + | chr3.1:13306122-13306141 | None:intergenic | 45.0% |
| !! | ATGCAAGGAAAGGAAGTACC+TGG | + | chr3.1:13304136-13304155 | None:intergenic | 45.0% |
| !! | GAAAGGAAGTACCTGGATGA+GGG | + | chr3.1:13304129-13304148 | None:intergenic | 45.0% |
| !! | GGTAGTTTACATGGCTTTGG+TGG | - | chr3.1:13305485-13305504 | MS.gene039903:intron | 45.0% |
| !! | TGGAATGGCATTGGCTTATG+GGG | + | chr3.1:13304992-13305011 | None:intergenic | 45.0% |
| !!! | ACTCCAGTGAGGCAGTTTTT+TGG | + | chr3.1:13305143-13305162 | None:intergenic | 45.0% |
| !!! | TTTGTTTTGCTGTCGGACCA+GGG | + | chr3.1:13304747-13304766 | None:intergenic | 45.0% |
| ACCAGGGGAGTGAATCGAAT+AGG | + | chr3.1:13304731-13304750 | None:intergenic | 50.0% | |
| ACCTATTCGATTCACTCCCC+TGG | - | chr3.1:13304727-13304746 | MS.gene039903:intron | 50.0% | |
| ACTTGGATCCGGAGACAAAC+TGG | + | chr3.1:13305765-13305784 | None:intergenic | 50.0% | |
| CACAATTGTTGTGGTGCTCG+AGG | + | chr3.1:13305201-13305220 | None:intergenic | 50.0% | |
| GTGCAATGTGGTGCTCCATT+TGG | - | chr3.1:13306148-13306167 | MS.gene039903:CDS | 50.0% | |
| TCCACGGGATCTGCATCAAA+GGG | - | chr3.1:13304774-13304793 | MS.gene039903:intron | 50.0% | |
| TGATCTTTCCCTTGCCAGCT+GGG | - | chr3.1:13304889-13304908 | MS.gene039903:intron | 50.0% | |
| TGCAACCCCCACAAATCTCA+AGG | - | chr3.1:13303992-13304011 | MS.gene039903:CDS | 50.0% | |
| TGCATCAAAGGGAAATGGCC+TGG | - | chr3.1:13304785-13304804 | MS.gene039903:intron | 50.0% | |
| TGGCCCAGAATATGCGATTG+CGG | - | chr3.1:13304842-13304861 | MS.gene039903:intron | 50.0% | |
| TTCCACGGGATCTGCATCAA+AGG | - | chr3.1:13304773-13304792 | MS.gene039903:intron | 50.0% | |
| ! | AGAAAGCACGCCTGAAAGGA+AGG | + | chr3.1:13305529-13305548 | None:intergenic | 50.0% |
| ! | AGACAATGGTAGCATTGGGG+TGG | - | chr3.1:13304350-13304369 | MS.gene039903:intron | 50.0% |
| !! | GGAAAGGAAGTACCTGGATG+AGG | + | chr3.1:13304130-13304149 | None:intergenic | 50.0% |
| !! | GGCAGGTAACGGGAAATGAA+TGG | + | chr3.1:13305012-13305031 | None:intergenic | 50.0% |
| !! | TCTTCCTTTGCTTTGGGACG+AGG | - | chr3.1:13304936-13304955 | MS.gene039903:intron | 50.0% |
| !! | TTGTTTTGCTGTCGGACCAG+GGG | + | chr3.1:13304746-13304765 | None:intergenic | 50.0% |
| !!! | CTTTGTTTTGCTGTCGGACC+AGG | + | chr3.1:13304748-13304767 | None:intergenic | 50.0% |
| CAGACCTCGTCCCAAAGCAA+AGG | + | chr3.1:13304943-13304962 | None:intergenic | 55.0% | |
| CAGGCGTGCTTTCTTGCGTA+GGG | - | chr3.1:13305535-13305554 | MS.gene039903:intron | 55.0% | |
| CTGATCTTTCCCTTGCCAGC+TGG | - | chr3.1:13304888-13304907 | MS.gene039903:intron | 55.0% | |
| CTGCAGTTCTCGCTGGTAAG+TGG | - | chr3.1:13305559-13305578 | MS.gene039903:intron | 55.0% | |
| GGAAATGGCCTGGACATTGC+AGG | - | chr3.1:13304795-13304814 | MS.gene039903:intron | 55.0% | |
| TCAGGCGTGCTTTCTTGCGT+AGG | - | chr3.1:13305534-13305553 | MS.gene039903:intron | 55.0% | |
| TCCCTTTGATGCAGATCCCG+TGG | + | chr3.1:13304778-13304797 | None:intergenic | 55.0% | |
| TGTCTTCACTGCCCTCATCC+AGG | - | chr3.1:13304115-13304134 | MS.gene039903:intron | 55.0% | |
| ! | CGCAAGAAAGCACGCCTGAA+AGG | + | chr3.1:13305533-13305552 | None:intergenic | 55.0% |
| GTAGGGACTGCAGTTCTCGC+TGG | - | chr3.1:13305552-13305571 | MS.gene039903:intron | 60.0% | |
| ! | TATGGGGCACTCCCTCTGGA+TGG | + | chr3.1:13304976-13304995 | None:intergenic | 60.0% |
| ! | GGCTTATGGGGCACTCCCTC+TGG | + | chr3.1:13304980-13304999 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 13303930 | 13306193 | 13303930 | ID=MS.gene039903 |
| chr3.1 | mRNA | 13303930 | 13306193 | 13303930 | ID=MS.gene039903.t1;Parent=MS.gene039903 |
| chr3.1 | exon | 13306110 | 13306193 | 13306110 | ID=MS.gene039903.t1.exon1;Parent=MS.gene039903.t1 |
| chr3.1 | CDS | 13306110 | 13306193 | 13306110 | ID=cds.MS.gene039903.t1;Parent=MS.gene039903.t1 |
| chr3.1 | exon | 13305987 | 13306034 | 13305987 | ID=MS.gene039903.t1.exon2;Parent=MS.gene039903.t1 |
| chr3.1 | CDS | 13305987 | 13306034 | 13305987 | ID=cds.MS.gene039903.t1;Parent=MS.gene039903.t1 |
| chr3.1 | exon | 13304550 | 13304637 | 13304550 | ID=MS.gene039903.t1.exon3;Parent=MS.gene039903.t1 |
| chr3.1 | CDS | 13304550 | 13304637 | 13304550 | ID=cds.MS.gene039903.t1;Parent=MS.gene039903.t1 |
| chr3.1 | exon | 13304314 | 13304357 | 13304314 | ID=MS.gene039903.t1.exon4;Parent=MS.gene039903.t1 |
| chr3.1 | CDS | 13304314 | 13304357 | 13304314 | ID=cds.MS.gene039903.t1;Parent=MS.gene039903.t1 |
| chr3.1 | exon | 13303930 | 13304013 | 13303930 | ID=MS.gene039903.t1.exon5;Parent=MS.gene039903.t1 |
| chr3.1 | CDS | 13303930 | 13304013 | 13303930 | ID=cds.MS.gene039903.t1;Parent=MS.gene039903.t1 |
| Gene Sequence |
| Protein sequence |
