AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene066996


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066996.t1 MTR_1g026890 97.303 482 4 1 1 473 1 482 0.0 940
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066996.t1 AT4G32720 50.985 457 158 9 1 445 1 403 2.34e-143 417
MS.gene066996.t1 AT4G32720 51.584 442 153 8 1 430 1 393 1.90e-141 413
MS.gene066996.t1 AT1G79880 42.217 424 181 11 5 427 4 364 3.59e-96 296
MS.gene066996.t1 AT1G79880 39.142 373 163 11 56 427 1 310 1.43e-69 225
MS.gene066996.t1 AT1G79880 38.701 385 167 12 56 434 1 322 2.37e-69 225
MS.gene066996.t1 AT2G43970 29.452 146 88 2 2 147 185 315 3.86e-12 68.9
MS.gene066996.t1 AT5G46250 27.074 229 123 9 8 209 101 312 3.88e-12 68.6
MS.gene066996.t1 AT2G43970 29.452 146 88 2 2 147 185 315 4.64e-12 68.6
MS.gene066996.t1 AT5G46250 29.940 167 92 5 8 166 101 250 7.66e-12 67.0
MS.gene066996.t1 AT5G46250 29.940 167 92 5 8 166 101 250 8.47e-12 67.0

Find 89 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATACTTTCTATATTTATTT+TGG 0.150399 1.3:+12808725 None:intergenic
CGTGCTTTCTGAGCAGCTTC+AGG 0.270223 1.3:+12809324 None:intergenic
AAGGCTATAACTAAGCCTTT+AGG 0.286449 1.3:+12810097 None:intergenic
GCCGAAAAGGGCCAGGAAAC+TGG 0.288268 1.3:-12809794 MS.gene066996:CDS
ACCTGCTCAATTACCTCTTC+TGG 0.299485 1.3:+12811279 None:intergenic
AACCTGTCGTATAACCTTCT+TGG 0.309750 1.3:+12813966 None:intergenic
CTCAATTACCTCTTCTGGCT+TGG 0.321742 1.3:+12811284 None:intergenic
AGGCTATAACTAAGCCTTTA+GGG 0.335538 1.3:+12810098 None:intergenic
AAGGTTGTGTTTCAGAAGTT+TGG 0.339229 1.3:-12809713 MS.gene066996:CDS
ACGTGCTGCTGCAGCCCTTT+CGG 0.339660 1.3:-12809304 MS.gene066996:CDS
TGCTGCAGCCCTTTCGGAAA+AGG 0.341335 1.3:-12809298 MS.gene066996:CDS
CGTAATAGAGACAATGATTC+TGG 0.344136 1.3:-12808757 MS.gene066996:CDS
AAGTAAAACTAACCGGTAAC+TGG 0.344730 1.3:+12809237 None:intergenic
CTTTGCTTTGTTCCTTCAAT+CGG 0.350383 1.3:-12812270 MS.gene066996:CDS
ACAGTACATAGATTTCAATA+TGG 0.354619 1.3:-12809379 MS.gene066996:intron
TAACTACACAGTGGTTAGTT+TGG 0.362858 1.3:-12812293 MS.gene066996:intron
GCTGCAGCCCTTTCGGAAAA+GGG 0.363306 1.3:-12809297 MS.gene066996:CDS
TGAACTGCTCTTTAGTTTGA+AGG 0.365442 1.3:+12810078 None:intergenic
AGAAGAGCCAAGAAAACAAC+CGG 0.372511 1.3:-12809844 MS.gene066996:CDS
TCAATTACCTCTTCTGGCTT+GGG 0.381807 1.3:+12811285 None:intergenic
TGCGTGCCACTTACCTTCCT+CGG 0.406995 1.3:+12808913 None:intergenic
TACTAAGCCCGCTGATGTTA+AGG 0.409561 1.3:-12812218 MS.gene066996:CDS
TTCAATATGGGAGATGAGTC+AGG 0.414927 1.3:-12809366 MS.gene066996:CDS
GGAGGCTGAAGGCGAAGAAA+AGG 0.425040 1.3:-12809915 MS.gene066996:CDS
CGGGCGCTGAGCTAGAATTA+AGG 0.430112 1.3:-12810687 MS.gene066996:CDS
ATGCTTTCGCATCCGATTGA+AGG 0.433367 1.3:+12812258 None:intergenic
GAAGAAGTGGAGTCCTTCTT+CGG 0.441428 1.3:-12811207 MS.gene066996:CDS
GATTTCAGGTCAACAGTGTT+CGG 0.445081 1.3:-12810816 MS.gene066996:intron
GCTACTCTAGATCCAGTTAC+CGG 0.447734 1.3:-12809249 MS.gene066996:intron
CTTGGCATATTGACCGAAGA+AGG 0.449259 1.3:+12811194 None:intergenic
AAATGGGGTGAAGGAAGAAA+AGG 0.452338 1.3:-12809882 MS.gene066996:CDS
GGAGGAGGAAGGTATGGTAG+AGG 0.458576 1.3:-12808793 MS.gene066996:CDS
TTTACTCAAGAAATCATCCC+TGG 0.462095 1.3:+12813825 None:intergenic
TGCATTCCAGGGAGCAAAGT+TGG 0.464023 1.3:-12811324 MS.gene066996:intron
TACTGTGAAGCTTGAAGAAG+TGG 0.465343 1.3:-12811220 MS.gene066996:CDS
TCACCTTTCCTTCACCTGCC+CGG 0.468675 1.3:+12809825 None:intergenic
GGTGACTGAAGGTGCCGAAA+AGG 0.481831 1.3:-12809807 MS.gene066996:CDS
TATCTTGTTTACCACGAAGC+TGG 0.484324 1.3:+12808958 None:intergenic
AGCTTCACAGTATATTCAAA+TGG 0.487645 1.3:+12811231 None:intergenic
CAGTACATAGATTTCAATAT+GGG 0.489907 1.3:-12809378 MS.gene066996:CDS
TGTGTTATCCTCCTCGTGGT+TGG 0.492162 1.3:+12810220 None:intergenic
TTCAGGGGAGGAGGAAGGTA+TGG 0.496516 1.3:-12808799 MS.gene066996:intron
CTGCAGCCCTTTCGGAAAAG+GGG 0.498607 1.3:-12809296 MS.gene066996:CDS
TTCCAGGGAGCAAAGTTGGC+AGG 0.499364 1.3:-12811320 MS.gene066996:intron
TGTCTTACGTGAAGATTTGA+AGG 0.499878 1.3:-12809732 MS.gene066996:CDS
GAAAACAACCGGGCAGGTGA+AGG 0.504891 1.3:-12809833 MS.gene066996:CDS
GCCAGAAGAGGTAATTGAGC+AGG 0.508078 1.3:-12811280 MS.gene066996:CDS
TGAAGGTGCCGAAAAGGGCC+AGG 0.512350 1.3:-12809801 MS.gene066996:CDS
CCGAAAAGGGCCAGGAAACT+GGG 0.514402 1.3:-12809793 MS.gene066996:CDS
ACTGTCAATGAAAGTGAAGA+TGG 0.515278 1.3:-12813802 MS.gene066996:CDS
TATTGTTACAGCTACCCTAA+AGG 0.518011 1.3:-12810112 MS.gene066996:intron
GTTTCTTCCTTAACATCAGC+GGG 0.518351 1.3:+12812211 None:intergenic
CTTTGACGCAGAAAGAGAAA+AGG 0.519218 1.3:-12810282 MS.gene066996:CDS
GTGACTGAAGGTGCCGAAAA+GGG 0.521308 1.3:-12809806 MS.gene066996:CDS
GTTCGGTTGCCCCGTCATGT+TGG 0.521804 1.3:-12810799 MS.gene066996:CDS
TGCAGCCCTTTCGGAAAAGG+GGG 0.524299 1.3:-12809295 MS.gene066996:CDS
TCCTCAGCAGCAACTTCAGA+GGG 0.526503 1.3:+12810004 None:intergenic
CAATACTGGAGCCAGCTTCG+TGG 0.527832 1.3:-12808969 MS.gene066996:CDS
TCAGTGATAGTAATCTTCCC+AGG 0.528131 1.3:-12813843 MS.gene066996:CDS
ACCCTCTGAAGTTGCTGCTG+AGG 0.528326 1.3:-12810005 MS.gene066996:CDS
GGAGGAAGGTATGGTAGAGG+AGG 0.530321 1.3:-12808790 MS.gene066996:CDS
AGCCAAGAAAACAACCGGGC+AGG 0.531861 1.3:-12809839 MS.gene066996:CDS
GAGATGAGTCAGGATTCATT+CGG 0.541514 1.3:-12809356 MS.gene066996:CDS
AACCAAGAAGGTTATACGAC+AGG 0.543197 1.3:-12813968 MS.gene066996:intron
TCACTCAAGCTATCAGAAGA+TGG 0.556963 1.3:-12812151 MS.gene066996:intron
GATGCGAAAGCATCTTAAGT+TGG 0.561750 1.3:-12812248 MS.gene066996:CDS
CAACCGGGCAGGTGAAGGAA+AGG 0.585700 1.3:-12809828 MS.gene066996:CDS
TTCCTCAGCAGCAACTTCAG+AGG 0.588125 1.3:+12810003 None:intergenic
CATCTGATGAGAACTCAACA+AGG 0.591422 1.3:+12810749 None:intergenic
CAATGGAGTGAACGAAGGAA+AGG 0.592633 1.3:-12809936 MS.gene066996:CDS
TCAGAAGTTTGGTGATGTGA+AGG 0.592670 1.3:-12809702 MS.gene066996:intron
CAGTGATAGTAATCTTCCCA+GGG 0.596203 1.3:-12813842 MS.gene066996:CDS
GCAGCCCTTTCGGAAAAGGG+GGG 0.596520 1.3:-12809294 MS.gene066996:CDS
TTACTCAAGAAATCATCCCT+GGG 0.601574 1.3:+12813826 None:intergenic
TGACGAAGAAACAACCAAGA+AGG 0.607861 1.3:-12813980 MS.gene066996:CDS
TGAACTTCCCAAGCCAGAAG+AGG 0.608914 1.3:-12811292 MS.gene066996:CDS
AGAGACAATGATTCTGGACG+AGG 0.611973 1.3:-12808751 MS.gene066996:CDS
GACAATGATAAAGAAAACAA+TGG 0.616572 1.3:-12809953 MS.gene066996:CDS
GGTGAAGGAAAGGTGACTGA+AGG 0.628219 1.3:-12809818 MS.gene066996:CDS
AGTTTCTTCCTTAACATCAG+CGG 0.630747 1.3:+12812210 None:intergenic
CTTCTTCGGTCAATATGCCA+AGG 0.638433 1.3:-12811193 MS.gene066996:intron
AACGAAGGAAAGGAGGCTGA+AGG 0.639810 1.3:-12809926 MS.gene066996:CDS
TGGAGTGAACGAAGGAAAGG+AGG 0.640717 1.3:-12809933 MS.gene066996:CDS
GAAGAGCCAAGAAAACAACC+GGG 0.640992 1.3:-12809843 MS.gene066996:CDS
TATTTGTGTTATCCTCCTCG+TGG 0.654110 1.3:+12810216 None:intergenic
GAAAACAATGGAGTGAACGA+AGG 0.669742 1.3:-12809941 MS.gene066996:CDS
ATCTGATGAGAACTCAACAA+GGG 0.670020 1.3:+12810750 None:intergenic
GAATGTGGGTTCCAACCACG+AGG 0.704964 1.3:-12810231 MS.gene066996:CDS
TGTGGGTTCCAACCACGAGG+AGG 0.705081 1.3:-12810228 MS.gene066996:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTAACAAAAATAGTT+TGG - chr1.3:12811812-12811831 MS.gene066996:intron 10.0%
!!! AAATTGAAGTTTTTTATAAA+GGG + chr1.3:12812319-12812338 None:intergenic 10.0%
!!! AATACTTTCTATATTTATTT+TGG + chr1.3:12813998-12814017 None:intergenic 10.0%
!! TAATATATGTATTTGTCAAA+TGG + chr1.3:12812207-12812226 None:intergenic 15.0%
!! TATTAAAAAACTGTAATTGA+TGG - chr1.3:12812254-12812273 MS.gene066996:CDS 15.0%
!! TGTATATTCATTAAATTTCT+TGG - chr1.3:12811683-12811702 MS.gene066996:intron 15.0%
!!! AATTATATTAATACCTTTTC+AGG - chr1.3:12813904-12813923 MS.gene066996:intron 15.0%
!!! ATTATATTAATACCTTTTCA+GGG - chr1.3:12813905-12813924 MS.gene066996:intron 15.0%
!!! GAAATTGAAGTTTTTTATAA+AGG + chr1.3:12812320-12812339 None:intergenic 15.0%
!!! GTTTATATTTTTAATGATGA+AGG - chr1.3:12810927-12810946 MS.gene066996:intron 15.0%
!!! TCGTCTTTTATTTATTTATT+TGG - chr1.3:12813137-12813156 MS.gene066996:intron 15.0%
!!! TTAATGAATCATTAATTTTC+TGG - chr1.3:12811179-12811198 MS.gene066996:intron 15.0%
!! AAAAATAGAGAAAATCATCA+AGG + chr1.3:12813845-12813864 None:intergenic 20.0%
!! AACAGCATAATCTAAATTAA+TGG + chr1.3:12811006-12811025 None:intergenic 20.0%
!! AATGAAATTTATATCTATCG+TGG + chr1.3:12811160-12811179 None:intergenic 20.0%
!! ACCAAATTGATAAACAAAAT+AGG + chr1.3:12808966-12808985 None:intergenic 20.0%
!! ATAGATAAATATCAAACCAA+AGG + chr1.3:12813086-12813105 None:intergenic 20.0%
!! ATTTAAGAAAATTGAAGTAC+CGG - chr1.3:12809084-12809103 MS.gene066996:intron 20.0%
!! CCAAATTGATAAACAAAATA+GGG + chr1.3:12808965-12808984 None:intergenic 20.0%
!! GAAATAAGTAATAAGTTATG+TGG + chr1.3:12811362-12811381 None:intergenic 20.0%
!! GTTAATACCAATAAAAAGTA+GGG - chr1.3:12809756-12809775 MS.gene066996:CDS 20.0%
!! TACAACAATTATACACAAAA+TGG + chr1.3:12810625-12810644 None:intergenic 20.0%
!! TAGATATAAATTTCATGTAG+TGG + chr1.3:12811121-12811140 None:intergenic 20.0%
!!! ACATTTTTGTTTTTGATTTC+AGG - chr1.3:12811890-12811909 MS.gene066996:intron 20.0%
!!! AGATTTCTTTAAGATAAATC+TGG - chr1.3:12811745-12811764 MS.gene066996:intron 20.0%
!!! ATATTTTCTCAAATTACTGT+CGG - chr1.3:12810117-12810136 MS.gene066996:intron 20.0%
!!! ATCTAATTTTTCAATCAGTT+GGG - chr1.3:12813510-12813529 MS.gene066996:intron 20.0%
!!! ATTAATTTAGAGTTAATCGA+AGG + chr1.3:12811095-12811114 None:intergenic 20.0%
!!! ATTACTTTGCTTTCATTTTA+TGG + chr1.3:12812576-12812595 None:intergenic 20.0%
!!! CTTCAATTTTCTTAAATGAT+CGG + chr1.3:12809081-12809100 None:intergenic 20.0%
!!! GAAGAAAATAAACTGATTTT+AGG + chr1.3:12809693-12809712 None:intergenic 20.0%
!!! GATGATTTTCTCTATTTTTT+GGG - chr1.3:12813846-12813865 MS.gene066996:CDS 20.0%
!!! TGATGATTTTCTCTATTTTT+TGG - chr1.3:12813845-12813864 MS.gene066996:CDS 20.0%
!!! TTATATTAATACCTTTTCAG+GGG - chr1.3:12813906-12813925 MS.gene066996:intron 20.0%
!!! TTTGTTTATCAATTTGGTTT+AGG - chr1.3:12808968-12808987 MS.gene066996:CDS 20.0%
! AAACCTTCAAATATTAACCA+CGG + chr1.3:12811781-12811800 None:intergenic 25.0%
! AACTCTAAATTAACGATAGA+TGG - chr1.3:12810980-12810999 MS.gene066996:intron 25.0%
! ACAGTACATAGATTTCAATA+TGG - chr1.3:12813341-12813360 MS.gene066996:intron 25.0%
! ATAAACAAAATAGGGCAAAA+TGG + chr1.3:12808957-12808976 None:intergenic 25.0%
! ATATATTAACATTAATGCCG+TGG - chr1.3:12811587-12811606 MS.gene066996:intron 25.0%
! ATTTAGATTATGCTGTTGTA+TGG - chr1.3:12811009-12811028 MS.gene066996:intron 25.0%
! ATTTATGTTGTTCTGTTGTA+TGG - chr1.3:12811041-12811060 MS.gene066996:intron 25.0%
! CAATCTATCCTATTCTTAAT+TGG + chr1.3:12810786-12810805 None:intergenic 25.0%
! CAGGTTATTAAAACAAAAGA+AGG + chr1.3:12813193-12813212 None:intergenic 25.0%
! CAGTACATAGATTTCAATAT+GGG - chr1.3:12813342-12813361 MS.gene066996:intron 25.0%
! CATTCTAACAGTATTATAGT+CGG - chr1.3:12811614-12811633 MS.gene066996:intron 25.0%
! CATTGATGTTAATATTACCT+TGG + chr1.3:12811547-12811566 None:intergenic 25.0%
! CGTTAATACCAATAAAAAGT+AGG - chr1.3:12809755-12809774 MS.gene066996:CDS 25.0%
! GAATAATTAAGCAAAAACGA+CGG + chr1.3:12808785-12808804 None:intergenic 25.0%
! GACAATGATAAAGAAAACAA+TGG - chr1.3:12812767-12812786 MS.gene066996:intron 25.0%
! GAGACTTATTAATTAAATGG+TGG + chr1.3:12809561-12809580 None:intergenic 25.0%
! GATGTAAAAGTAAAACTAAC+CGG + chr1.3:12813493-12813512 None:intergenic 25.0%
! GTGATAAATTCATTCTAATC+AGG - chr1.3:12810654-12810673 MS.gene066996:intron 25.0%
! TGTATATATTTACTCAATGC+AGG - chr1.3:12812410-12812429 MS.gene066996:intron 25.0%
! TTATACACAAAATGGATGAA+TGG + chr1.3:12810617-12810636 None:intergenic 25.0%
! TTGATCAAATGAGAAGAAAT+TGG + chr1.3:12810362-12810381 None:intergenic 25.0%
!! ATACATAAAGCATCATTACT+CGG + chr1.3:12811668-12811687 None:intergenic 25.0%
!! ATTTTCCCTAGTTTACATTT+TGG + chr1.3:12810332-12810351 None:intergenic 25.0%
!! TTGCTTTCATTTTATGGTTA+GGG + chr1.3:12812570-12812589 None:intergenic 25.0%
!! TTTGCTTTCATTTTATGGTT+AGG + chr1.3:12812571-12812590 None:intergenic 25.0%
!!! ATTTGTTGTTGTTTTTGGAA+TGG - chr1.3:12809421-12809440 MS.gene066996:intron 25.0%
!!! CAATTTGGTTTAGGTTTTTA+GGG - chr1.3:12808977-12808996 MS.gene066996:CDS 25.0%
!!! CATCTAATTTTTCAATCAGT+TGG - chr1.3:12813509-12813528 MS.gene066996:intron 25.0%
!!! CCATTCAATTCAATTTTAGT+GGG - chr1.3:12809481-12809500 MS.gene066996:intron 25.0%
!!! CCCTATTTTGTTTATCAATT+TGG - chr1.3:12808962-12808981 MS.gene066996:CDS 25.0%
!!! CTAGTGACAATGATTTTTTA+TGG - chr1.3:12813571-12813590 MS.gene066996:intron 25.0%
!!! GGTTTTGTTAATGTAATTGA+AGG - chr1.3:12808998-12809017 MS.gene066996:intron 25.0%
!!! GTTACATTTGTTGTTGTTTT+TGG - chr1.3:12809416-12809435 MS.gene066996:intron 25.0%
!!! TCAATTTGGTTTAGGTTTTT+AGG - chr1.3:12808976-12808995 MS.gene066996:CDS 25.0%
!!! TGGATTTTGACAGAAAATAT+TGG + chr1.3:12812187-12812206 None:intergenic 25.0%
!!! TTTGTTGTTGTTTTTGGAAT+GGG - chr1.3:12809422-12809441 MS.gene066996:intron 25.0%
AAAAGGAGCAAGAGAAAAAT+GGG - chr1.3:12812822-12812841 MS.gene066996:intron 30.0%
AAATAGGGCAAAATGGTAAA+AGG + chr1.3:12808950-12808969 None:intergenic 30.0%
AACAGAACAACATAAATCGA+AGG + chr1.3:12811038-12811057 None:intergenic 30.0%
AACCTTCAAATATTAACCAC+GGG + chr1.3:12811780-12811799 None:intergenic 30.0%
AAGCAAAAATTAGTGTATGC+GGG - chr1.3:12812014-12812033 MS.gene066996:intron 30.0%
AGCTTCACAGTATATTCAAA+TGG + chr1.3:12811492-12811511 None:intergenic 30.0%
ATCCTACCAAAATGTAAACT+AGG - chr1.3:12810323-12810342 MS.gene066996:intron 30.0%
ATCTATGAACATGCTTACTT+TGG + chr1.3:12812059-12812078 None:intergenic 30.0%
ATTTACTAACTTCTACCTGT+GGG - chr1.3:12812343-12812362 MS.gene066996:intron 30.0%
CCCAATGAACAAAATTTCAA+GGG + chr1.3:12811258-12811277 None:intergenic 30.0%
CCCACTAAAATTGAATTGAA+TGG + chr1.3:12809484-12809503 None:intergenic 30.0%
GAAAAATCTCGTAAGAATGT+GGG - chr1.3:12812475-12812494 MS.gene066996:intron 30.0%
GAAGCAAAAATTAGTGTATG+CGG - chr1.3:12812013-12812032 MS.gene066996:intron 30.0%
GGCGAGACTTATTAATTAAA+TGG + chr1.3:12809564-12809583 None:intergenic 30.0%
GTTAAATTAAAGTTAGCGAG+TGG - chr1.3:12810814-12810833 MS.gene066996:intron 30.0%
TAATTAATAAGTCTCGCCAT+TGG - chr1.3:12809566-12809585 MS.gene066996:intron 30.0%
TACCAATCAAGAATAAGTCT+CGG + chr1.3:12813708-12813727 None:intergenic 30.0%
TACTGTTAGAATGTAAACCA+CGG + chr1.3:12811607-12811626 None:intergenic 30.0%
TAGGTACATGTATACGTATA+CGG + chr1.3:12809372-12809391 None:intergenic 30.0%
TCCTACCAAAATGTAAACTA+GGG - chr1.3:12810324-12810343 MS.gene066996:intron 30.0%
TGAAAAATCTCGTAAGAATG+TGG - chr1.3:12812474-12812493 MS.gene066996:intron 30.0%
TGAGTTAAAGATCTAAACCA+CGG + chr1.3:12813217-12813236 None:intergenic 30.0%
TTCTTGATTGGTATGTAATC+AGG - chr1.3:12813715-12813734 MS.gene066996:intron 30.0%
TTGAGTGCAAATACAAGTTT+CGG + chr1.3:12810092-12810111 None:intergenic 30.0%
! AAATAGTTTGGAGTATAGTC+TGG - chr1.3:12811824-12811843 MS.gene066996:intron 30.0%
! ATAGTGGAAAAAAACTTGTC+TGG - chr1.3:12809622-12809641 MS.gene066996:intron 30.0%
! ATCACTATCGTGTTTTATGT+CGG + chr1.3:12809043-12809062 None:intergenic 30.0%
! CCCTTGAAATTTTGTTCATT+GGG - chr1.3:12811255-12811274 MS.gene066996:CDS 30.0%
! GAGACTTTTTGATCTAATAG+TGG - chr1.3:12809606-12809625 MS.gene066996:intron 30.0%
! GCCATTCAATTCAATTTTAG+TGG - chr1.3:12809480-12809499 MS.gene066996:intron 30.0%
! TCCCTTGAAATTTTGTTCAT+TGG - chr1.3:12811254-12811273 MS.gene066996:CDS 30.0%
! TCCTAAAGACTATAGTTTGT+TGG - chr1.3:12810252-12810271 MS.gene066996:CDS 30.0%
! TGAAACTTTCTAAGAGTAGA+TGG - chr1.3:12811211-12811230 MS.gene066996:CDS 30.0%
! TGCTTTCATTTTATGGTTAG+GGG + chr1.3:12812569-12812588 None:intergenic 30.0%
!! CCTAAAGACTATAGTTTGTT+GGG - chr1.3:12810253-12810272 MS.gene066996:CDS 30.0%
!! TTTTGTTTGTTTGAAACTGC+AGG - chr1.3:12808842-12808861 MS.gene066996:intron 30.0%
!!! AGGTTTACCCTACTTTTTAT+TGG + chr1.3:12809766-12809785 None:intergenic 30.0%
!!! ATTTTAGTGGGTTAGTTCTA+TGG - chr1.3:12809493-12809512 MS.gene066996:intron 30.0%
!!! ATTTTTTTCTCTCACTTTGC+TGG - chr1.3:12810760-12810779 MS.gene066996:CDS 30.0%
!!! CTGATTTTAGGACACTAAAA+TGG + chr1.3:12809681-12809700 None:intergenic 30.0%
AAAGGAGCAAGAGAAAAATG+GGG - chr1.3:12812823-12812842 MS.gene066996:intron 35.0%
AAAGTAGGGTAAACCTTAGT+TGG - chr1.3:12809770-12809789 MS.gene066996:CDS 35.0%
AAGGCTATAACTAAGCCTTT+AGG + chr1.3:12812626-12812645 None:intergenic 35.0%
AAGTAAAACTAACCGGTAAC+TGG + chr1.3:12813486-12813505 None:intergenic 35.0%
ACCAATCAAGAATAAGTCTC+GGG + chr1.3:12813707-12813726 None:intergenic 35.0%
ACTGTCAATGAAAGTGAAGA+TGG - chr1.3:12808918-12808937 MS.gene066996:intron 35.0%
AGATTACTCTTTAGGTGAGT+TGG - chr1.3:12809907-12809926 MS.gene066996:CDS 35.0%
AGGCTATAACTAAGCCTTTA+GGG + chr1.3:12812625-12812644 None:intergenic 35.0%
AGTTTCTTCCTTAACATCAG+CGG + chr1.3:12810513-12810532 None:intergenic 35.0%
ATCCCGTGGTTAATATTTGA+AGG - chr1.3:12811775-12811794 MS.gene066996:intron 35.0%
ATCTGATGAGAACTCAACAA+GGG + chr1.3:12811973-12811992 None:intergenic 35.0%
CATTTACTAACTTCTACCTG+TGG - chr1.3:12812342-12812361 MS.gene066996:intron 35.0%
CCAGTAAAATTGTGAAGTAC+CGG - chr1.3:12809112-12809131 MS.gene066996:intron 35.0%
CCCAACAAACTATAGTCTTT+AGG + chr1.3:12810256-12810275 None:intergenic 35.0%
CGTAATAGAGACAATGATTC+TGG - chr1.3:12813963-12813982 MS.gene066996:intron 35.0%
CTAGAGCTTTGCAAAGAAAT+TGG + chr1.3:12810872-12810891 None:intergenic 35.0%
CTCATGTTTACCAGAATCAT+AGG + chr1.3:12811727-12811746 None:intergenic 35.0%
CTGAAATTCTAACTACACAG+TGG - chr1.3:12810418-12810437 MS.gene066996:intron 35.0%
GAAAAGGAGCAAGAGAAAAA+TGG - chr1.3:12812821-12812840 MS.gene066996:intron 35.0%
GAAACAAAATGTCACGTATG+TGG + chr1.3:12811327-12811346 None:intergenic 35.0%
GATTACTCTTTAGGTGAGTT+GGG - chr1.3:12809908-12809927 MS.gene066996:CDS 35.0%
GCCCAATGAACAAAATTTCA+AGG + chr1.3:12811259-12811278 None:intergenic 35.0%
GTGAAGCTGAAAAACAATAC+TGG - chr1.3:12813737-12813756 MS.gene066996:intron 35.0%
TACATGTACCTATGCAACAT+AGG - chr1.3:12809380-12809399 MS.gene066996:intron 35.0%
TATATTTACTCAATGCAGGC+AGG - chr1.3:12812414-12812433 MS.gene066996:intron 35.0%
TATTGTTACAGCTACCCTAA+AGG - chr1.3:12812608-12812627 MS.gene066996:intron 35.0%
TCACATACATATGAGAGTGA+AGG + chr1.3:12809452-12809471 None:intergenic 35.0%
TCACTCAAAACGAGAAAAAG+TGG + chr1.3:12809171-12809190 None:intergenic 35.0%
TCATATCTCACTTGAACCAA+TGG + chr1.3:12809585-12809604 None:intergenic 35.0%
TGTCTTACGTGAAGATTTGA+AGG - chr1.3:12812988-12813007 MS.gene066996:intron 35.0%
TTACTCAAGAAATCATCCCT+GGG + chr1.3:12808897-12808916 None:intergenic 35.0%
TTTACTAACTTCTACCTGTG+GGG - chr1.3:12812344-12812363 MS.gene066996:intron 35.0%
TTTACTCAAGAAATCATCCC+TGG + chr1.3:12808898-12808917 None:intergenic 35.0%
TTTGCTGGCCAATTAAGAAT+AGG - chr1.3:12810775-12810794 MS.gene066996:CDS 35.0%
! AAAGTTTAGGACTCTGTTAG+TGG + chr1.3:12810006-12810025 None:intergenic 35.0%
! AAGTTTAGGACTCTGTTAGT+GGG + chr1.3:12810005-12810024 None:intergenic 35.0%
! AATAGGATAGATTGCTGTTC+TGG - chr1.3:12810792-12810811 MS.gene066996:CDS 35.0%
! ACTTTTTGTCTCCAACATGA+CGG + chr1.3:12811935-12811954 None:intergenic 35.0%
! CTATAGTCTTTAGGAGAAGT+TGG + chr1.3:12810247-12810266 None:intergenic 35.0%
! CTTTGCTTTGTTCCTTCAAT+CGG - chr1.3:12810450-12810469 MS.gene066996:intron 35.0%
! GTCACGTCATTATTCTTTTC+TGG + chr1.3:12812677-12812696 None:intergenic 35.0%
! TAACTACACAGTGGTTAGTT+TGG - chr1.3:12810427-12810446 MS.gene066996:intron 35.0%
! TGGTGATGTGAAGGTAAATA+TGG - chr1.3:12813027-12813046 MS.gene066996:intron 35.0%
!! TAAGAAAATTGAAGTACCGG+CGG - chr1.3:12809087-12809106 MS.gene066996:intron 35.0%
!! TATTAATACCTTTTCAGGGG+AGG - chr1.3:12813909-12813928 MS.gene066996:intron 35.0%
!! TCCCTAGTTTACATTTTGGT+AGG + chr1.3:12810328-12810347 None:intergenic 35.0%
!! TGAACTGCTCTTTAGTTTGA+AGG + chr1.3:12812645-12812664 None:intergenic 35.0%
!!! GTTTTTTATAAAGGGATGCC+AGG + chr1.3:12812311-12812330 None:intergenic 35.0%
!!! TCTCTATTTTTTGGGATCAC+CGG - chr1.3:12813854-12813873 MS.gene066996:CDS 35.0%
!!! TTGTTTTAATAACCTGACCG+TGG - chr1.3:12813197-12813216 MS.gene066996:intron 35.0%
AAATCGAGTCACACCAACTA+AGG + chr1.3:12809786-12809805 None:intergenic 40.0%
AAATGGGGTGAAGGAAGAAA+AGG - chr1.3:12812838-12812857 MS.gene066996:intron 40.0%
AACCAAGAAGGTTATACGAC+AGG - chr1.3:12808752-12808771 MS.gene066996:CDS 40.0%
AACCTGTCGTATAACCTTCT+TGG + chr1.3:12808757-12808776 None:intergenic 40.0%
AATCCCCACAACACATCTTT+GGG - chr1.3:12809842-12809861 MS.gene066996:CDS 40.0%
AATCTGGTATTTGAATCCCG+TGG - chr1.3:12811761-12811780 MS.gene066996:intron 40.0%
AGAAGAGCCAAGAAAACAAC+CGG - chr1.3:12812876-12812895 MS.gene066996:intron 40.0%
CAGTGATAGTAATCTTCCCA+GGG - chr1.3:12808878-12808897 MS.gene066996:intron 40.0%
CATCTGATGAGAACTCAACA+AGG + chr1.3:12811974-12811993 None:intergenic 40.0%
CATTCTATTCGTGCATTCCA+GGG - chr1.3:12811385-12811404 MS.gene066996:intron 40.0%
CCAATCAAGAATAAGTCTCG+GGG + chr1.3:12813706-12813725 None:intergenic 40.0%
CTAAAGAGTAATCTCCGCTA+AGG + chr1.3:12809901-12809920 None:intergenic 40.0%
CTTAGCGGAGATTACTCTTT+AGG - chr1.3:12809899-12809918 MS.gene066996:CDS 40.0%
CTTGGTGAAAAGTTGAAGCA+TGG - chr1.3:12811701-12811720 MS.gene066996:intron 40.0%
CTTTGACGCAGAAAGAGAAA+AGG - chr1.3:12812438-12812457 MS.gene066996:intron 40.0%
GAAAACAATGGAGTGAACGA+AGG - chr1.3:12812779-12812798 MS.gene066996:intron 40.0%
GAGATGAGTCAGGATTCATT+CGG - chr1.3:12813364-12813383 MS.gene066996:intron 40.0%
GCTTTCGATCAGACAAGTTT+CGG + chr1.3:12810035-12810054 None:intergenic 40.0%
GGAGACAAAAAGTTCTTCTG+TGG - chr1.3:12811942-12811961 MS.gene066996:intron 40.0%
GGTAGGATATCTCTGTAAGT+GGG + chr1.3:12810311-12810330 None:intergenic 40.0%
GTAGGATATCTCTGTAAGTG+GGG + chr1.3:12810310-12810329 None:intergenic 40.0%
GTCGACTACAACAGTATAGA+AGG + chr1.3:12810850-12810869 None:intergenic 40.0%
GTCTGGTACAACACTATTAG+TGG - chr1.3:12809639-12809658 MS.gene066996:intron 40.0%
GTGAGTGATTATGATTCTCC+TGG - chr1.3:12812290-12812309 MS.gene066996:intron 40.0%
GTTTCTTCCTTAACATCAGC+GGG + chr1.3:12810512-12810531 None:intergenic 40.0%
TAAAGATCTAAACCACGGTC+AGG + chr1.3:12813212-12813231 None:intergenic 40.0%
TACTGTGAAGCTTGAAGAAG+TGG - chr1.3:12811500-12811519 MS.gene066996:intron 40.0%
TATTTGTGTTATCCTCCTCG+TGG + chr1.3:12812507-12812526 None:intergenic 40.0%
TCACTCAAGCTATCAGAAGA+TGG - chr1.3:12810569-12810588 MS.gene066996:intron 40.0%
TCAGTGATAGTAATCTTCCC+AGG - chr1.3:12808877-12808896 MS.gene066996:intron 40.0%
TCATTCTATTCGTGCATTCC+AGG - chr1.3:12811384-12811403 MS.gene066996:intron 40.0%
TCTAATCAGGCAACTGCAAT+AGG - chr1.3:12810667-12810686 MS.gene066996:intron 40.0%
TGACGAAGAAACAACCAAGA+AGG - chr1.3:12808740-12808759 MS.gene066996:CDS 40.0%
TGGTAGGATATCTCTGTAAG+TGG + chr1.3:12810312-12810331 None:intergenic 40.0%
TTCAATATGGGAGATGAGTC+AGG - chr1.3:12813354-12813373 MS.gene066996:intron 40.0%
TTTCAACCTAAGCACCTTAG+CGG - chr1.3:12809884-12809903 MS.gene066996:CDS 40.0%
! CATAAAGCATCATTACTCGG+AGG + chr1.3:12811665-12811684 None:intergenic 40.0%
! CCGGTACTTCACAATTTTAC+TGG + chr1.3:12809115-12809134 None:intergenic 40.0%
! CTTTTTGTCTCCAACATGAC+GGG + chr1.3:12811934-12811953 None:intergenic 40.0%
! GATTTCAGGTCAACAGTGTT+CGG - chr1.3:12811904-12811923 MS.gene066996:intron 40.0%
! GGGTTTTTGCTCATCTGTTT+TGG + chr1.3:12812699-12812718 None:intergenic 40.0%
! GTCTGTTTGGTTCAAACAAG+AGG + chr1.3:12813684-12813703 None:intergenic 40.0%
! TATCTTGTTTACCACGAAGC+TGG + chr1.3:12813765-12813784 None:intergenic 40.0%
! TCTGTTAGTGGGTAATCTGT+TGG + chr1.3:12809994-12810013 None:intergenic 40.0%
! TTTTTGTCTCCAACATGACG+GGG + chr1.3:12811933-12811952 None:intergenic 40.0%
!! AAAGTTTTAGCAACCGAGGA+AGG - chr1.3:12813794-12813813 MS.gene066996:intron 40.0%
!! AGAGAAAGTTTTAGCAACCG+AGG - chr1.3:12813790-12813809 MS.gene066996:intron 40.0%
!! GATGCGAAAGCATCTTAAGT+TGG - chr1.3:12810472-12810491 MS.gene066996:intron 40.0%
!! GGTGTGACTCGATTTTTAAG+CGG - chr1.3:12809791-12809810 MS.gene066996:CDS 40.0%
!! GTAAAATTGTGAAGTACCGG+CGG - chr1.3:12809115-12809134 MS.gene066996:intron 40.0%
!! GTTTCGGTGCTACAAAGTTT+AGG + chr1.3:12810019-12810038 None:intergenic 40.0%
!! TCAATTACCTCTTCTGGCTT+GGG + chr1.3:12811438-12811457 None:intergenic 40.0%
!!! CTCTATTTTTTGGGATCACC+GGG - chr1.3:12813855-12813874 MS.gene066996:CDS 40.0%
!!! CTGTTTTTTTCCCAGTTTCC+TGG + chr1.3:12812940-12812959 None:intergenic 40.0%
!!! TCTATTTTTTGGGATCACCG+GGG - chr1.3:12813856-12813875 MS.gene066996:CDS 40.0%
AATAAGTCTCGGGGTCTGTT+TGG + chr1.3:12813697-12813716 None:intergenic 45.0%
ACCTGCTCAATTACCTCTTC+TGG + chr1.3:12811444-12811463 None:intergenic 45.0%
AGAGACAATGATTCTGGACG+AGG - chr1.3:12813969-12813988 MS.gene066996:CDS 45.0%
AGTTGAACATATGCCCTTGC+GGG - chr1.3:12810214-12810233 MS.gene066996:CDS 45.0%
ATCCCCACAACACATCTTTG+GGG - chr1.3:12809843-12809862 MS.gene066996:CDS 45.0%
ATCTTCCGTACCTGTTGCAT+AGG - chr1.3:12809344-12809363 MS.gene066996:CDS 45.0%
ATGCAACATAGGTCGATGTC+TGG - chr1.3:12809391-12809410 MS.gene066996:intron 45.0%
ATGCTTTCGCATCCGATTGA+AGG + chr1.3:12810465-12810484 None:intergenic 45.0%
CAACTCCTGTTGTCAACGTT+GGG + chr1.3:12810199-12810218 None:intergenic 45.0%
CAATCCCCACAACACATCTT+TGG - chr1.3:12809841-12809860 MS.gene066996:CDS 45.0%
CAATGGAGTGAACGAAGGAA+AGG - chr1.3:12812784-12812803 MS.gene066996:intron 45.0%
CCCCGAGACTTATTCTTGAT+TGG - chr1.3:12813703-12813722 MS.gene066996:intron 45.0%
CTATGGTGCACAAGTGAGAT+AGG - chr1.3:12809510-12809529 MS.gene066996:intron 45.0%
CTGTTGGGACTTTCTTCCTT+TGG - chr1.3:12813067-12813086 MS.gene066996:intron 45.0%
CTTCTTCGGTCAATATGCCA+AGG - chr1.3:12811527-12811546 MS.gene066996:intron 45.0%
CTTGGCATATTGACCGAAGA+AGG + chr1.3:12811529-12811548 None:intergenic 45.0%
GAAGAAGTGGAGTCCTTCTT+CGG - chr1.3:12811513-12811532 MS.gene066996:intron 45.0%
GAAGAGCCAAGAAAACAACC+GGG - chr1.3:12812877-12812896 MS.gene066996:intron 45.0%
GACATCGACCTATGTTGCAT+AGG + chr1.3:12809391-12809410 None:intergenic 45.0%
GAGTTGAACATATGCCCTTG+CGG - chr1.3:12810213-12810232 MS.gene066996:CDS 45.0%
GCAAGAGAAAAATGGGGTGA+AGG - chr1.3:12812829-12812848 MS.gene066996:intron 45.0%
GCTACTCTAGATCCAGTTAC+CGG - chr1.3:12813471-12813490 MS.gene066996:intron 45.0%
GTATACGGTACCTATGCAAC+AGG + chr1.3:12809357-12809376 None:intergenic 45.0%
TACTAAGCCCGCTGATGTTA+AGG - chr1.3:12810502-12810521 MS.gene066996:intron 45.0%
TCAACTCCTGTTGTCAACGT+TGG + chr1.3:12810200-12810219 None:intergenic 45.0%
TCTGGTGTTCGTGTTAGTGT+CGG - chr1.3:12810161-12810180 MS.gene066996:intron 45.0%
TGAAGCATGGCCTATGATTC+TGG - chr1.3:12811714-12811733 MS.gene066996:intron 45.0%
TGATGTGTCAGAATCGTGTC+TGG - chr1.3:12810143-12810162 MS.gene066996:intron 45.0%
TGTCAGACACAGACATGTGT+TGG + chr1.3:12810069-12810088 None:intergenic 45.0%
! AGTTTGAGTTTCACTACCCC+CGG + chr1.3:12813876-12813895 None:intergenic 45.0%
! CACAATTTTACTGGTACCGC+CGG + chr1.3:12809106-12809125 None:intergenic 45.0%
! CTCAATTACCTCTTCTGGCT+TGG + chr1.3:12811439-12811458 None:intergenic 45.0%
! TAATCTCCGCTAAGGTGCTT+AGG + chr1.3:12809893-12809912 None:intergenic 45.0%
! TTTTAAGCGGCTGACCTTGT+GGG - chr1.3:12809804-12809823 MS.gene066996:CDS 45.0%
!! AGTTTGTTGGGATGCTCTGT+GGG - chr1.3:12810265-12810284 MS.gene066996:CDS 45.0%
!! TAATACCTTTTCAGGGGAGG+AGG - chr1.3:12813912-12813931 MS.gene066996:intron 45.0%
!! TAGTTTGTTGGGATGCTCTG+TGG - chr1.3:12810264-12810283 MS.gene066996:CDS 45.0%
!! TTTTTAAGCGGCTGACCTTG+TGG - chr1.3:12809803-12809822 MS.gene066996:CDS 45.0%
!!! CTATTTTTTGGGATCACCGG+GGG - chr1.3:12813857-12813876 MS.gene066996:CDS 45.0%
!! ATAATATTATAATTTCTTAT+AGG - chr1.3:12812139-12812158 MS.gene066996:intron 5.0%
!!! ATATATATTTTTTTTTTTGA+AGG + chr1.3:12811573-12811592 None:intergenic 5.0%
!!! ATTTTTAAAAAATTAAAGTT+TGG + chr1.3:12809318-12809337 None:intergenic 5.0%
!!! TTTTTAAAAAATTAAAGTTT+GGG + chr1.3:12809317-12809336 None:intergenic 5.0%
AACGAAGGAAAGGAGGCTGA+AGG - chr1.3:12812794-12812813 MS.gene066996:intron 50.0%
AAGTCCCAACAGCTGGAGAA+CGG + chr1.3:12813059-12813078 None:intergenic 50.0%
AGGAAGAAAGTCCCAACAGC+TGG + chr1.3:12813066-12813085 None:intergenic 50.0%
ATCTCTGTAAGTGGGGCCTT+TGG + chr1.3:12810303-12810322 None:intergenic 50.0%
CAACATAGGTCGATGTCTGG+CGG - chr1.3:12809394-12809413 MS.gene066996:intron 50.0%
CCTCCCCAAAGATGTGTTGT+GGG + chr1.3:12809849-12809868 None:intergenic 50.0%
CGGTACCTATGCAACAGGTA+CGG + chr1.3:12809352-12809371 None:intergenic 50.0%
CTCCCCAAAGATGTGTTGTG+GGG + chr1.3:12809848-12809867 None:intergenic 50.0%
GCATCATTACTCGGAGGCTA+AGG + chr1.3:12811659-12811678 None:intergenic 50.0%
GCCAGAAGAGGTAATTGAGC+AGG - chr1.3:12811440-12811459 MS.gene066996:intron 50.0%
GGTGAAGGAAAGGTGACTGA+AGG - chr1.3:12812902-12812921 MS.gene066996:intron 50.0%
GTTGAACATATGCCCTTGCG+GGG - chr1.3:12810215-12810234 MS.gene066996:CDS 50.0%
TAGCAACCGAGGAAGGTAAG+TGG - chr1.3:12813801-12813820 MS.gene066996:CDS 50.0%
TCCTCAGCAGCAACTTCAGA+GGG + chr1.3:12812719-12812738 None:intergenic 50.0%
TGAACTTCCCAAGCCAGAAG+AGG - chr1.3:12811428-12811447 MS.gene066996:intron 50.0%
TGCATTCCAGGGAGCAAAGT+TGG - chr1.3:12811396-12811415 MS.gene066996:intron 50.0%
TGGAGTGAACGAAGGAAAGG+AGG - chr1.3:12812787-12812806 MS.gene066996:intron 50.0%
TGTGTTATCCTCCTCGTGGT+TGG + chr1.3:12812503-12812522 None:intergenic 50.0%
TTCCTCAGCAGCAACTTCAG+AGG + chr1.3:12812720-12812739 None:intergenic 50.0%
TTTAAGCGGCTGACCTTGTG+GGG - chr1.3:12809805-12809824 MS.gene066996:CDS 50.0%
TTTCCCGTTCTCCAGCTGTT+GGG - chr1.3:12813052-12813071 MS.gene066996:intron 50.0%
! CACAACACATCTTTGGGGAG+GGG - chr1.3:12809848-12809867 MS.gene066996:CDS 50.0%
! CCACAACACATCTTTGGGGA+GGG - chr1.3:12809847-12809866 MS.gene066996:CDS 50.0%
! GTTTGTTGGGATGCTCTGTG+GGG - chr1.3:12810266-12810285 MS.gene066996:CDS 50.0%
! TAAGCCCCCCTTTTCCGAAA+GGG + chr1.3:12813433-12813452 None:intergenic 50.0%
! TGTCTGATCGAAAGCGTGTC+CGG - chr1.3:12810040-12810059 MS.gene066996:CDS 50.0%
! TTAGGTGAGTTGGGTCCCTT+GGG - chr1.3:12809917-12809936 MS.gene066996:CDS 50.0%
! TTTAGGTGAGTTGGGTCCCT+TGG - chr1.3:12809916-12809935 MS.gene066996:CDS 50.0%
! TTTTCCCGTTCTCCAGCTGT+TGG - chr1.3:12813051-12813070 MS.gene066996:intron 50.0%
!! GTGACTGAAGGTGCCGAAAA+GGG - chr1.3:12812914-12812933 MS.gene066996:intron 50.0%
!! TGTTAGTGTCGGTGCTTCAC+AGG - chr1.3:12810172-12810191 MS.gene066996:intron 50.0%
AAGACTGTCTTACGCCCCAC+AGG + chr1.3:12812361-12812380 None:intergenic 55.0%
AATAGCAGTCCTCCCCCACA+AGG + chr1.3:12809821-12809840 None:intergenic 55.0%
ACCTTCCTCCTCCCCTGAAA+AGG + chr1.3:12813920-12813939 None:intergenic 55.0%
AGCCAAGAAAACAACCGGGC+AGG - chr1.3:12812881-12812900 MS.gene066996:intron 55.0%
AGTCCCAACAGCTGGAGAAC+GGG + chr1.3:12813058-12813077 None:intergenic 55.0%
ATCCTGCCAACTTTGCTCCC+TGG + chr1.3:12811405-12811424 None:intergenic 55.0%
CAATACTGGAGCCAGCTTCG+TGG - chr1.3:12813751-12813770 MS.gene066996:intron 55.0%
CAGGTCCCAACGTTGACAAC+AGG - chr1.3:12810191-12810210 MS.gene066996:intron 55.0%
CCCTCCCCAAAGATGTGTTG+TGG + chr1.3:12809850-12809869 None:intergenic 55.0%
CCGAAAAGGGCCAGGAAACT+GGG - chr1.3:12812927-12812946 MS.gene066996:intron 55.0%
CGAGAAAAAGTGGAGTCCCG+CGG + chr1.3:12809161-12809180 None:intergenic 55.0%
CGTGCTTTCTGAGCAGCTTC+AGG + chr1.3:12813399-12813418 None:intergenic 55.0%
CTGCAGCCCTTTCGGAAAAG+GGG - chr1.3:12813424-12813443 MS.gene066996:intron 55.0%
GAAAACAACCGGGCAGGTGA+AGG - chr1.3:12812887-12812906 MS.gene066996:intron 55.0%
GAATGTGGGTTCCAACCACG+AGG - chr1.3:12812489-12812508 MS.gene066996:intron 55.0%
GCTGCAGCCCTTTCGGAAAA+GGG - chr1.3:12813423-12813442 MS.gene066996:intron 55.0%
GGAGGCTGAAGGCGAAGAAA+AGG - chr1.3:12812805-12812824 MS.gene066996:intron 55.0%
TCACCTTTCCTTCACCTGCC+CGG + chr1.3:12812898-12812917 None:intergenic 55.0%
TGCAGCCCTTTCGGAAAAGG+GGG - chr1.3:12813425-12813444 MS.gene066996:intron 55.0%
TGCTGCAGCCCTTTCGGAAA+AGG - chr1.3:12813422-12813441 MS.gene066996:intron 55.0%
TTAAGCGGCTGACCTTGTGG+GGG - chr1.3:12809806-12809825 MS.gene066996:CDS 55.0%
TTCAGGGGAGGAGGAAGGTA+TGG - chr1.3:12813921-12813940 MS.gene066996:intron 55.0%
TTCCAGGGAGCAAAGTTGGC+AGG - chr1.3:12811400-12811419 MS.gene066996:intron 55.0%
! AAGTTGGCTCATACCCCGCA+AGG + chr1.3:12810231-12810250 None:intergenic 55.0%
! AGTTGGCTCATACCCCGCAA+GGG + chr1.3:12810230-12810249 None:intergenic 55.0%
! CACAGACATGTGTTGGCCAC+CGG + chr1.3:12810062-12810081 None:intergenic 55.0%
! CCCACAACACATCTTTGGGG+AGG - chr1.3:12809846-12809865 MS.gene066996:CDS 55.0%
! CCCAGTTTCCTGGCCCTTTT+CGG + chr1.3:12812930-12812949 None:intergenic 55.0%
! CTAAGCCCCCCTTTTCCGAA+AGG + chr1.3:12813434-12813453 None:intergenic 55.0%
! GGAGGAAGGTATGGTAGAGG+AGG - chr1.3:12813930-12813949 MS.gene066996:intron 55.0%
! GGAGGAGGAAGGTATGGTAG+AGG - chr1.3:12813927-12813946 MS.gene066996:intron 55.0%
!! ACCCTCTGAAGTTGCTGCTG+AGG - chr1.3:12812715-12812734 MS.gene066996:intron 55.0%
!! ACCTTTTCAGGGGAGGAGGA+AGG - chr1.3:12813916-12813935 MS.gene066996:intron 55.0%
!! CACCTGCCCGGTTGTTTTCT+TGG + chr1.3:12812886-12812905 None:intergenic 55.0%
!! CGGGCGCTGAGCTAGAATTA+AGG - chr1.3:12812033-12812052 MS.gene066996:intron 55.0%
!! GGTGACTGAAGGTGCCGAAA+AGG - chr1.3:12812913-12812932 MS.gene066996:intron 55.0%
!! TGCGTGCCACTTACCTTCCT+CGG + chr1.3:12813810-12813829 None:intergenic 55.0%
CAACCGGGCAGGTGAAGGAA+AGG - chr1.3:12812892-12812911 MS.gene066996:intron 60.0%
CCTGACCCTAGTCAGCCCAA+GGG + chr1.3:12809935-12809954 None:intergenic 60.0%
CCTTGGGCTGACTAGGGTCA+GGG - chr1.3:12809933-12809952 MS.gene066996:CDS 60.0%
GCAGCCCTTTCGGAAAAGGG+GGG - chr1.3:12813426-12813445 MS.gene066996:intron 60.0%
GCCGAAAAGGGCCAGGAAAC+TGG - chr1.3:12812926-12812945 MS.gene066996:intron 60.0%
GTTCGGTTGCCCCGTCATGT+TGG - chr1.3:12811921-12811940 MS.gene066996:intron 60.0%
TAGGGTCAGGGTAGGCCTCA+AGG - chr1.3:12809945-12809964 MS.gene066996:CDS 60.0%
TCAGCGCTCTGTGAGCCTTG+AGG + chr1.3:12809963-12809982 None:intergenic 60.0%
TGGGGCCACTGTGGTACCAA+AGG - chr1.3:12810284-12810303 MS.gene066996:CDS 60.0%
TGGGGCCTTTGGTACCACAG+TGG + chr1.3:12810292-12810311 None:intergenic 60.0%
TGGGTCCCTTGGGCTGACTA+GGG - chr1.3:12809927-12809946 MS.gene066996:CDS 60.0%
TGTGGGTTCCAACCACGAGG+AGG - chr1.3:12812492-12812511 MS.gene066996:intron 60.0%
TTGGGTCCCTTGGGCTGACT+AGG - chr1.3:12809926-12809945 MS.gene066996:CDS 60.0%
! ACGTGCTGCTGCAGCCCTTT+CGG - chr1.3:12813416-12813435 MS.gene066996:intron 60.0%
! CTGATCGAAAGCGTGTCCGG+TGG - chr1.3:12810043-12810062 MS.gene066996:CDS 60.0%
!! TGAAGGTGCCGAAAAGGGCC+AGG - chr1.3:12812919-12812938 MS.gene066996:intron 60.0%
!! TGTGAAGTACCGGCGGTACC+AGG - chr1.3:12809122-12809141 MS.gene066996:intron 60.0%
AAGTGGAGTCCCGCGGTACC+AGG + chr1.3:12809154-12809173 None:intergenic 65.0%
AGGCACGTACCTGGTACCGC+CGG + chr1.3:12809134-12809153 None:intergenic 65.0%
AGGTACGTGCCTGGTACCGC+GGG - chr1.3:12809142-12809161 MS.gene066996:intron 65.0%
CAGGTACGTGCCTGGTACCG+CGG - chr1.3:12809141-12809160 MS.gene066996:intron 65.0%
CCCTGACCCTAGTCAGCCCA+AGG + chr1.3:12809936-12809955 None:intergenic 65.0%
CCCTTGGGCTGACTAGGGTC+AGG - chr1.3:12809932-12809951 MS.gene066996:CDS 65.0%
GATGCTCTGTGGGGCCACTG+TGG - chr1.3:12810275-12810294 MS.gene066996:CDS 65.0%
GGGCTGACTAGGGTCAGGGT+AGG - chr1.3:12809937-12809956 MS.gene066996:CDS 65.0%
AGCGGCTGACCTTGTGGGGG+AGG - chr1.3:12809809-12809828 MS.gene066996:CDS 70.0%
CGCGGTACCAGGCACGTACC+TGG + chr1.3:12809143-12809162 None:intergenic 70.0%
GGCGGTACCAGGTACGTGCC+TGG - chr1.3:12809133-12809152 MS.gene066996:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 12808723 12814019 12808723 ID=MS.gene066996
chr1.3 mRNA 12808723 12814019 12808723 ID=MS.gene066996.t1;Parent=MS.gene066996
chr1.3 exon 12813969 12814019 12813969 ID=MS.gene066996.t1.exon1;Parent=MS.gene066996.t1
chr1.3 CDS 12813969 12814019 12813969 ID=cds.MS.gene066996.t1;Parent=MS.gene066996.t1
chr1.3 exon 12813800 12813878 12813800 ID=MS.gene066996.t1.exon2;Parent=MS.gene066996.t1
chr1.3 CDS 12813800 12813878 12813800 ID=cds.MS.gene066996.t1;Parent=MS.gene066996.t1
chr1.3 exon 12812152 12812304 12812152 ID=MS.gene066996.t1.exon3;Parent=MS.gene066996.t1
chr1.3 CDS 12812152 12812304 12812152 ID=cds.MS.gene066996.t1;Parent=MS.gene066996.t1
chr1.3 exon 12811194 12811336 12811194 ID=MS.gene066996.t1.exon4;Parent=MS.gene066996.t1
chr1.3 CDS 12811194 12811336 12811194 ID=cds.MS.gene066996.t1;Parent=MS.gene066996.t1
chr1.3 exon 12810682 12810830 12810682 ID=MS.gene066996.t1.exon5;Parent=MS.gene066996.t1
chr1.3 CDS 12810682 12810830 12810682 ID=cds.MS.gene066996.t1;Parent=MS.gene066996.t1
chr1.3 exon 12810206 12810310 12810206 ID=MS.gene066996.t1.exon6;Parent=MS.gene066996.t1
chr1.3 CDS 12810206 12810310 12810206 ID=cds.MS.gene066996.t1;Parent=MS.gene066996.t1
chr1.3 exon 12809703 12810123 12809703 ID=MS.gene066996.t1.exon7;Parent=MS.gene066996.t1
chr1.3 CDS 12809703 12810123 12809703 ID=cds.MS.gene066996.t1;Parent=MS.gene066996.t1
chr1.3 exon 12809250 12809397 12809250 ID=MS.gene066996.t1.exon8;Parent=MS.gene066996.t1
chr1.3 CDS 12809250 12809397 12809250 ID=cds.MS.gene066996.t1;Parent=MS.gene066996.t1
chr1.3 exon 12808927 12809005 12808927 ID=MS.gene066996.t1.exon9;Parent=MS.gene066996.t1
chr1.3 CDS 12808927 12809005 12808927 ID=cds.MS.gene066996.t1;Parent=MS.gene066996.t1
chr1.3 exon 12808723 12808816 12808723 ID=MS.gene066996.t1.exon10;Parent=MS.gene066996.t1
chr1.3 CDS 12808723 12808816 12808723 ID=cds.MS.gene066996.t1;Parent=MS.gene066996.t1
Gene Sequence

>MS.gene066996

ATGGCGAAACATTCACTTGACGAAGAAACAACCAAGAAGGTTATACGACAGGTTAGTAACCGTCGTTTTTGCTTAATTATTCAACTCTTATGTCGTTTTTGATTTATCTTAATTTTTTTTTTTGTTTGTTTGAAACTGCAGGTTGAATTTTATTTCAGTGATAGTAATCTTCCCAGGGATGATTTCTTGAGTAAAACTGTCAATGAAAGTGAAGATGGAAGTATCCTTTTACCATTTTGCCCTATTTTGTTTATCAATTTGGTTTAGGTTTTTAGGGTTTTGTTAATGTAATTGAAGGTAGTTAAAACTATTTAATGCCGACATAAAACACGATAGTGATAGTTACATGTAAATACCGATCATTTAAGAAAATTGAAGTACCGGCGGTACCAGTAAAATTGTGAAGTACCGGCGGTACCAGGTACGTGCCTGGTACCGCGGGACTCCACTTTTTCTCGTTTTGAGTGAAATTAGCTTTCTCTAATTTTTTTACTTTTTAAAATTTTATATCTATGTTTTTGTTGTAAATTGAACTTTTTAGCTCTCATGTTATATTATATAACTAAATTTTTGTTTTTTTTTATTGATGTACCCAAACTTTAATTTTTTAAAAATTGCTGTATCTTCCGTACCTGTTGCATAGGTACCGTATACGTATACATGTACCTATGCAACATAGGTCGATGTCTGGCGGTTACATTTGTTGTTGTTTTTGGAATGGGTATGCCTTCACTCTCATATGTATGTGAAAAATCAAGCCATTCAATTCAATTTTAGTGGGTTAGTTCTATGGTGCACAAGTGAGATAGGTGTTGTATCATATATTAGTTTATTTCCACCATTTAATTAATAAGTCTCGCCATTGGTTCAAGTGAGATATGATGAGACTTTTTGATCTAATAGTGGAAAAAAACTTGTCTGGTACAACACTATTAGTGGTGCGCTGAAGAATTAGCCATTTTAGTGTCCTAAAATCAGTTTATTTTCTTCAATTCAACATAACAAAACATAAAAAGAGAGAAGTTTTCATTTCGTTAATACCAATAAAAAGTAGGGTAAACCTTAGTTGGTGTGACTCGATTTTTAAGCGGCTGACCTTGTGGGGGAGGACTGCTATTCAATCCCCACAACACATCTTTGGGGAGGGGTAAAGAGTTTAAGTTTCAACCTAAGCACCTTAGCGGAGATTACTCTTTAGGTGAGTTGGGTCCCTTGGGCTGACTAGGGTCAGGGTAGGCCTCAAGGCTCACAGAGCGCTGACAAAAGTACCAACAGATTACCCACTAACAGAGTCCTAAACTTTGTAGCACCGAAACTTGTCTGATCGAAAGCGTGTCCGGTGGCCAACACATGTCTGTGTCTGACACCGAAACTTGTATTTGCACTCAATTCTGATATTTTCTCAAATTACTGTCGGTGTTGATGTGTCAGAATCGTGTCTGGTGTTCGTGTTAGTGTCGGTGCTTCACAGGTCCCAACGTTGACAACAGGAGTTGAACATATGCCCTTGCGGGGTATGAGCCAACTTCTCCTAAAGACTATAGTTTGTTGGGATGCTCTGTGGGGCCACTGTGGTACCAAAGGCCCCACTTACAGAGATATCCTACCAAAATGTAAACTAGGGAAAATAAGCATTCCAATTTCTTCTCATTTGATCAATGCTAAACATGTTTTTGTTTTCGTTGTTGATCTTAACTGAAATTCTAACTACACAGTGGTTAGTTTGGCTTTGCTTTGTTCCTTCAATCGGATGCGAAAGCATCTTAAGTTGGCTGATGATACTAAGCCCGCTGATGTTAAGGAAGAAACTGTCAAAGCTGTTGCTGAAGTTTTGAAAAATGCTGCTTCACTCAAGCTATCAGAAGATGGTCAGTTTCTTTCTCTTTTGAATCCATTCATCCATTTTGTGTATAATTGTTGTATCTAGTTTTGTGATAAATTCATTCTAATCAGGCAACTGCAATAGGTTATTTATTTGTGCTATTCATGATTAAAAAATCTATATTACTGCAACTTCTAATTAAACATAGCTGTGTGATTTTTTTCTCTCACTTTGCTGGCCAATTAAGAATAGGATAGATTGCTGTTCTGGTTAAATTAAAGTTAGCGAGTGGTTTTCTTTCACCTTCTATACTGTTGTAGTCGACCAATTTCTTTGCAAAGCTCTAGTAACTATATTTATATGAATCTCTAATTTCTACAACGTTTATATTTTTAATGATGAAGGTCATAAATTTCATGTTTTGAAACTATTGCTAACTCTAAATTAACGATAGATGGCCATTAATTTAGATTATGCTGTTGTATGGTCACCTTCGATTTATGTTGTTCTGTTGTATGGTCACTGATTTAGATTTAGAGTATGCTCACCTTCGATTAACTCTAAATTAATGATCCACTACATGAAATTTATATCTATCGTTAATTAAGAAAACCACGATAGATATAAATTTCATTTAATGAATCATTAATTTTCTGGATTATGTTTTGAAACTTTCTAAGAGTAGATGGTCATAAATTTAGTTTATTTCTCCCTTGAAATTTTGTTCATTGGGCGAGTGAGACTTAGATTGAAAAAAAAAAAAAAAAAAAGACATTTAACCACATACGTGACATTTTGTTTCTGTGTTGAATGACCACATAACTTATTACTTATTTCTGTCATTCTATTCGTGCATTCCAGGGAGCAAAGTTGGCAGGATTACTGAACTTCCCAAGCCAGAAGAGGTAATTGAGCAGGTTGAGATAAGAACGATTGCTGCATCACCATTTGAATATACTGTGAAGCTTGAAGAAGTGGAGTCCTTCTTCGGTCAATATGCCAAGGTAATATTAACATCAATGCTTCCTTCAAAAAAAAAAATATATATTAACATTAATGCCGTGGTTTACATTCTAACAGTATTATAGTCGGAATGCATCATGTTTGCTAACCTTAGCCTCCGAGTAATGATGCTTTATGTATATTCATTAAATTTCTTGGTGAAAAGTTGAAGCATGGCCTATGATTCTGGTAAACATGAGATTTCTTTAAGATAAATCTGGTATTTGAATCCCGTGGTTAATATTTGAAGGTTTTAGATTATATATTTATTTAACAAAAATAGTTTGGAGTATAGTCTGGTATTATAAAAAATACTTATTTATTTTGTAGAACAAAAAATGTAACATTTTTGTTTTTGATTTCAGGTCAACAGTGTTCGGTTGCCCCGTCATGTTGGAGACAAAAAGTTCTTCTGTGGTACTGCCCTTGTTGAGTTCTCATCAGATGAAGAAATGCAAAATGTTTTGAAGCAAAAATTAGTGTATGCGGGCGCTGAGCTAGAATTAAGGCCAAAGTAAGCATGTTCATAGATTCAATACTGAGTTACTGACTGTTGATGAATTTTAGTGAAATAATTTTTTTTTTCTGCTGTATAATATTATAATTTCTTATAGGAAGAAAATTAAGAGTATATAATCCAATATTTTCTGTCAAAATCCATTTGACAAATACATATATTACAATAAGCGTCAATTAATATCTATATTTATTAAAAAACTGTAATTGATGGTAGTTGCTTTAGAGTGAGTGATTATGATTCTCCTGGCATCCCTTTATAAAAAACTTCAATTTCTGCATTTACTAACTTCTACCTGTGGGGCGTAAGACAGTCTTGTCTATATGCATATATTGTCTAATAATATTGTATATATTTACTCAATGCAGGCAGGACTTTGACGCAGAAAGAGAAAAGGAATTAGAAAAGCATGAAAAATCTCGTAAGAATGTGGGTTCCAACCACGAGGAGGATAACACAAATACAGAAGAAGAGTAAGATTCTGAAATTCTTTTAATCTTTACCCCTAACCATAAAATGAAAGCAAAGTAATTGACTTCATTTGTATTGTTACAGCTACCCTAAAGGCTTAGTTATAGCCTTCAAACTAAAGAGCAGTTCAGATGAAGTTCCAGAAAAGAATAATGACGTGACCAAAACAGATGAGCAAAAACCCTCTGAAGTTGCTGCTGAGGAAAGTGATCAAAAGATGTCAGAAAATGATGACAATGATAAAGAAAACAATGGAGTGAACGAAGGAAAGGAGGCTGAAGGCGAAGAAAAGGAGCAAGAGAAAAATGGGGTGAAGGAAGAAAAGGAGACTGAAGTTGAAGAGAAGAGCCAAGAAAACAACCGGGCAGGTGAAGGAAAGGTGACTGAAGGTGCCGAAAAGGGCCAGGAAACTGGGAAAAAAACAGCTGTTATTTTCAAGAACGACTCAGATGTTGTCTTACGTGAAGATTTGAAGGTTGTGTTTCAGAAGTTTGGTGATGTGAAGGTAAATATGGTTTTTCCCGTTCTCCAGCTGTTGGGACTTTCTTCCTTTGGTTTGATATTTATCTATGACTTCATAGCTATCTATTATTGTTTAAAACTCGTCTTTTATTTATTTATTTGGATTTCTTAGCACTTTTGAAAGATACAGTTTCCTTCTTTTGTTTTAATAACCTGACCGTGGTTTAGATCTTTAACTCACATTACTAAAAAATAATTTTCTGAATTATCTTTGCTAAGAATTGACTTTTTGAAATTTTCTTTGCTTAAGACATGTATATTGATGTTATATTCATGTTTATTGCACAGTACATAGATTTCAATATGGGAGATGAGTCAGGATTCATTCGGTTTGATGAACCTGAAGCTGCTCAGAAAGCACGTGCTGCTGCAGCCCTTTCGGAAAAGGGGGGCTTAGTTGTGAAGAATTATATTGCTACTCTAGATCCAGTTACCGGTTAGTTTTACTTTTACATCTAATTTTTCAATCAGTTGGGTTTCATGTGTTAATTATTGTATTTTTCTTTTAATGTTTCTAGTGACAATGATTTTTTATGGAAAAAATGCACGCTTCATTTCATGAGAATTTAAAATTTCACAAAATGTTCTAATATTTAAAATGTAAATTGATATCTCATTAAATATCCTCTTGTTTGAACCAAACAGACCCCGAGACTTATTCTTGATTGGTATGTAATCAGGTGAAGCTGAAAAACAATACTGGAGCCAGCTTCGTGGTAAACAAGATATACGCAGAGAAAGTTTTAGCAACCGAGGAAGGTAAGTGGCACGCAACTATCTCTTAACCTTGATGATTTTCTCTATTTTTTGGGATCACCGGGGGTAGTGAAACTCAAACTAGAATACTAATTATATTAATACCTTTTCAGGGGAGGAGGAAGGTATGGTAGAGGAGGCAAATTTTCGCGTAATAGAGACAATGATTCTGGACGAGGTCGCCAAAATAAATATAGAAAGTATTAA

Protein sequence

>MS.gene066996.t1

MAKHSLDEETTKKVIRQVEFYFSDSNLPRDDFLSKTVNESEDGMVSLALLCSFNRMRKHLKLADDTKPADVKEETVKAVAEVLKNAASLKLSEDGSKVGRITELPKPEEVIEQVEIRTIAASPFEYTVKLEEVESFFGQYAKVNSVRLPRHVGDKKFFCGTALVEFSSDEEMQNVLKQKLVYAGAELELRPKQDFDAEREKELEKHEKSRKNVGSNHEEDNTNTEEDYPKGLVIAFKLKSSSDEVPEKNNDVTKTDEQKPSEVAAEESDQKMSENDDNDKENNGVNEGKEAEGEEKEQEKNGVKEEKETEVEEKSQENNRAGEGKVTEGAEKGQETGKKTAVIFKNDSDVVLREDLKVVFQKFGDVKYIDFNMGDESGFIRFDEPEAAQKARAAAALSEKGGLVVKNYIATLDPVTGEAEKQYWSQLRGKQDIRRESFSNRGRGGGRYGRGGKFSRNRDNDSGRGRQNKYRKY