AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33879


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33879.t1 MTR_1g026890 97.510 482 3 1 1 473 1 482 0.0 943
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33879.t1 AT4G32720 51.204 457 157 9 1 445 1 403 2.94e-143 416
MS.gene33879.t1 AT4G32720 51.810 442 152 8 1 430 1 393 2.44e-141 412
MS.gene33879.t1 AT1G79880 42.217 424 181 11 5 427 4 364 4.09e-96 296
MS.gene33879.t1 AT1G79880 39.142 373 163 11 56 427 1 310 1.54e-69 225
MS.gene33879.t1 AT1G79880 38.701 385 167 12 56 434 1 322 2.69e-69 225
MS.gene33879.t1 AT2G43970 29.452 146 88 2 2 147 185 315 3.63e-12 68.9
MS.gene33879.t1 AT5G46250 27.074 229 123 9 8 209 101 312 3.71e-12 68.6
MS.gene33879.t1 AT2G43970 29.452 146 88 2 2 147 185 315 4.33e-12 68.6
MS.gene33879.t1 AT5G46250 29.940 167 92 5 8 166 101 250 7.06e-12 67.0
MS.gene33879.t1 AT5G46250 29.940 167 92 5 8 166 101 250 7.95e-12 67.0

Find 90 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATACTTTCTATATTTATTT+TGG 0.150399 1.2:+12937124 None:intergenic
CGTGCTTTCTGAGCAGCTTC+AGG 0.270223 1.2:+12937723 None:intergenic
AAGGCTATAACTAAGCCTTT+AGG 0.286449 1.2:+12938498 None:intergenic
GCCGAAAAGGGCCAGGAAAC+TGG 0.288268 1.2:-12938195 MS.gene33879:CDS
ACCTGCTCAATTACCTCTTC+TGG 0.299485 1.2:+12939681 None:intergenic
AACCTGTCGTATAACCTTCT+TGG 0.309750 1.2:+12942383 None:intergenic
CTCAATTACCTCTTCTGGCT+TGG 0.321742 1.2:+12939686 None:intergenic
AGGCTATAACTAAGCCTTTA+GGG 0.335538 1.2:+12938499 None:intergenic
AAGGTTGTGTTTCAGAAGTT+TGG 0.339229 1.2:-12938114 MS.gene33879:CDS
ACGTGCTGCTGCAGCCCTTT+CGG 0.339660 1.2:-12937703 MS.gene33879:CDS
TGCTGCAGCCCTTTCGGAAA+AGG 0.341335 1.2:-12937697 MS.gene33879:CDS
CGTAATAGAGACAATGATTC+TGG 0.344136 1.2:-12937156 MS.gene33879:CDS
AAGTAAAACTAACCGGTAAC+TGG 0.344730 1.2:+12937636 None:intergenic
CTTTGCTTTGTTCCTTCAAT+CGG 0.350383 1.2:-12940683 MS.gene33879:CDS
ACAGTACATAGATTTCAATA+TGG 0.354619 1.2:-12937778 MS.gene33879:intron
TAACTACACAGTGGTTAGTT+TGG 0.362858 1.2:-12940706 MS.gene33879:intron
GCTGCAGCCCTTTCGGAAAA+GGG 0.363306 1.2:-12937696 MS.gene33879:CDS
TGAACTGCTCTTTAGTTTGA+AGG 0.365442 1.2:+12938479 None:intergenic
TCAATTACCTCTTCTGGCTT+GGG 0.381807 1.2:+12939687 None:intergenic
TGCGTGCCACTTACCTTCCT+CGG 0.406995 1.2:+12937312 None:intergenic
TTCAATATGGGAGATGAGTC+AGG 0.414927 1.2:-12937765 MS.gene33879:CDS
TACTAAGCCCGCCGATGTTA+AGG 0.416987 1.2:-12940631 MS.gene33879:CDS
CAGGCGCTGAGCTAGAATTA+AGG 0.418251 1.2:-12939090 MS.gene33879:CDS
AGAAGAGCCAAGAAAACAAT+GGG 0.421708 1.2:-12938245 MS.gene33879:CDS
GGAGGCTGAAGGCGAAGAAA+AGG 0.425040 1.2:-12938316 MS.gene33879:CDS
ATGCTTTCGCATCCGATTGA+AGG 0.433367 1.2:+12940671 None:intergenic
GAAGAAGTGGAGTCCTTCTT+CGG 0.441428 1.2:-12939609 MS.gene33879:CDS
GATTTCAGGTCAACAGTGTT+CGG 0.445081 1.2:-12939219 MS.gene33879:intron
GCTACTCTAGATCCAGTTAC+CGG 0.447734 1.2:-12937648 MS.gene33879:intron
CTTGGCATATTGACCGAAGA+AGG 0.449259 1.2:+12939596 None:intergenic
AAATGGGGTGAAGGAAGAAA+AGG 0.452338 1.2:-12938283 MS.gene33879:CDS
GGAGGAGGAAGGTATGGTAG+AGG 0.458576 1.2:-12937192 MS.gene33879:CDS
TTTACTCAAGAAATCATCCC+TGG 0.462095 1.2:+12942248 None:intergenic
TGCATTCCAGGGAGCAAAGT+TGG 0.464023 1.2:-12939726 MS.gene33879:intron
TACTGTGAAGCTTGAAGAAG+TGG 0.465343 1.2:-12939622 MS.gene33879:CDS
GGTGACTGAAGGTGCCGAAA+AGG 0.481831 1.2:-12938208 MS.gene33879:CDS
TATCTTGTTTACCACGAAGC+TGG 0.484324 1.2:+12937357 None:intergenic
AGCTTCACAGTATATTCAAA+TGG 0.487645 1.2:+12939633 None:intergenic
CAGTACATAGATTTCAATAT+GGG 0.489907 1.2:-12937777 MS.gene33879:CDS
TGTGTTATCCTCCTCGTGGT+TGG 0.492162 1.2:+12938621 None:intergenic
TTCAGGGGAGGAGGAAGGTA+TGG 0.496516 1.2:-12937198 MS.gene33879:intron
CTGCAGCCCTTTCGGAAAAG+GGG 0.498607 1.2:-12937695 MS.gene33879:CDS
TTCCAGGGAGCAAAGTTGGC+AGG 0.499364 1.2:-12939722 MS.gene33879:intron
TGTCTTACGTGAAGATTTGA+AGG 0.499878 1.2:-12938133 MS.gene33879:CDS
GCCAGAAGAGGTAATTGAGC+AGG 0.508078 1.2:-12939682 MS.gene33879:CDS
TGAAGGTGCCGAAAAGGGCC+AGG 0.512350 1.2:-12938202 MS.gene33879:CDS
CCGAAAAGGGCCAGGAAACT+GGG 0.514402 1.2:-12938194 MS.gene33879:CDS
ACTGTCAATGAAAGTGAAGA+TGG 0.515278 1.2:-12942225 MS.gene33879:CDS
GTTTCTTCCTTAACATCGGC+GGG 0.516206 1.2:+12940624 None:intergenic
TATTGTTACAGCTACCCTAA+AGG 0.518011 1.2:-12938513 MS.gene33879:intron
CTTTGACGCAGAAAGAGAAA+AGG 0.519218 1.2:-12938683 MS.gene33879:CDS
GTGACTGAAGGTGCCGAAAA+GGG 0.521308 1.2:-12938207 MS.gene33879:CDS
GTTCGGTTGCCCCGTCATGT+TGG 0.521804 1.2:-12939202 MS.gene33879:CDS
TGCAGCCCTTTCGGAAAAGG+GGG 0.524299 1.2:-12937694 MS.gene33879:CDS
TCCTCAGCAGCAACTTCAGA+GGG 0.526503 1.2:+12938405 None:intergenic
AGCCAAGAAAACAATGGGGC+AGG 0.526829 1.2:-12938240 MS.gene33879:CDS
GACAGTTTCTTCCTTAACAT+CGG 0.527307 1.2:+12940620 None:intergenic
CAATACTGGAGCCAGCTTCG+TGG 0.527832 1.2:-12937368 MS.gene33879:CDS
TCAGTGATAGTAATCTTCCC+AGG 0.528131 1.2:-12942266 MS.gene33879:CDS
ACCCTCTGAAGTTGCTGCTG+AGG 0.528326 1.2:-12938406 MS.gene33879:CDS
GGAGGAAGGTATGGTAGAGG+AGG 0.530321 1.2:-12937189 MS.gene33879:CDS
GAAAACAATGGGGCAGGTGA+AGG 0.536070 1.2:-12938234 MS.gene33879:CDS
GAGATGAGTCAGGATTCATT+CGG 0.541514 1.2:-12937755 MS.gene33879:CDS
AACCAAGAAGGTTATACGAC+AGG 0.543197 1.2:-12942385 MS.gene33879:intron
TCACTCAAGCTATCAGAAGA+TGG 0.556963 1.2:-12940564 MS.gene33879:intron
GATGCGAAAGCATCTTAAGT+TGG 0.561750 1.2:-12940661 MS.gene33879:CDS
CAATGGGGCAGGTGAAGGAA+AGG 0.574806 1.2:-12938229 MS.gene33879:CDS
TTCCTCAGCAGCAACTTCAG+AGG 0.588125 1.2:+12938404 None:intergenic
CATCTGATGAGAACTCAACA+AGG 0.591422 1.2:+12939152 None:intergenic
GAGAAGAGCCAAGAAAACAA+TGG 0.592496 1.2:-12938246 MS.gene33879:CDS
CAATGGAGTGAACGAAGGAA+AGG 0.592633 1.2:-12938337 MS.gene33879:CDS
TCAGAAGTTTGGTGATGTGA+AGG 0.592670 1.2:-12938103 MS.gene33879:intron
CAGTGATAGTAATCTTCCCA+GGG 0.596203 1.2:-12942265 MS.gene33879:CDS
GCAGCCCTTTCGGAAAAGGG+GGG 0.596520 1.2:-12937693 MS.gene33879:CDS
AGTTTCTTCCTTAACATCGG+CGG 0.596636 1.2:+12940623 None:intergenic
TTACTCAAGAAATCATCCCT+GGG 0.601574 1.2:+12942249 None:intergenic
TGACGAAGAAACAACCAAGA+AGG 0.605378 1.2:-12942397 MS.gene33879:CDS
TGAACTTCCCAAGCCAGAAG+AGG 0.608914 1.2:-12939694 MS.gene33879:CDS
AGAGACAATGATTCTGGACG+AGG 0.611973 1.2:-12937150 MS.gene33879:CDS
GACAATGATAAAGAAAACAA+TGG 0.616572 1.2:-12938354 MS.gene33879:CDS
GGTGAAGGAAAGGTGACTGA+AGG 0.628219 1.2:-12938219 MS.gene33879:CDS
CTTCTTCGGTCAATATGCCA+AGG 0.638433 1.2:-12939595 MS.gene33879:intron
AACGAAGGAAAGGAGGCTGA+AGG 0.639810 1.2:-12938327 MS.gene33879:CDS
TGGAGTGAACGAAGGAAAGG+AGG 0.640717 1.2:-12938334 MS.gene33879:CDS
TATTTGTGTTATCCTCCTCG+TGG 0.654110 1.2:+12938617 None:intergenic
GAAAACAATGGAGTGAACGA+AGG 0.669742 1.2:-12938342 MS.gene33879:CDS
ATCTGATGAGAACTCAACAA+GGG 0.670020 1.2:+12939153 None:intergenic
GAATGTGGGTTCCAACCACG+AGG 0.704964 1.2:-12938632 MS.gene33879:CDS
TGTGGGTTCCAACCACGAGG+AGG 0.705081 1.2:-12938629 MS.gene33879:CDS
GAAGAGCCAAGAAAACAATG+GGG 0.727730 1.2:-12938244 MS.gene33879:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTAACAAAAATAGTT+TGG - chr1.2:12940225-12940244 MS.gene33879:intron 10.0%
!!! AAATTGAAGTTTTTTATAAA+GGG + chr1.2:12940734-12940753 None:intergenic 10.0%
!!! AATACTTTCTATATTTATTT+TGG + chr1.2:12942415-12942434 None:intergenic 10.0%
!!! TTGTCTTTTTTTTATTTATT+TGG - chr1.2:12941554-12941573 MS.gene33879:intron 10.0%
!!! TTTTTTATAGAAAAATGTTT+AGG - chr1.2:12938308-12938327 MS.gene33879:CDS 10.0%
!! TAATATATGTATTTGTCAAA+TGG + chr1.2:12940622-12940641 None:intergenic 15.0%
!! TAGATATAAATTTCATTTAG+TGG + chr1.2:12939599-12939580 None:intergenic 15.0%
!! TATTAAAAAACTGTAATTGA+TGG - chr1.2:12940669-12940688 MS.gene33879:CDS 15.0%
!! TGTATATTCATTAAATTTCT+TGG - chr1.2:12940096-12940115 MS.gene33879:intron 15.0%
!!! AATTATATTAATACCTTTTC+AGG - chr1.2:12942321-12942340 MS.gene33879:intron 15.0%
!!! ATTATATTAATACCTTTTCA+GGG - chr1.2:12942322-12942341 MS.gene33879:intron 15.0%
!!! GAAATTGAAGTTTTTTATAA+AGG + chr1.2:12940735-12940754 None:intergenic 15.0%
!!! TTTATATTTTTAACGATGAA+AGG - chr1.2:12939335-12939354 MS.gene33879:intron 15.0%
!! AAAAATAGAGAAAATCATCA+AGG + chr1.2:12942262-12942281 None:intergenic 20.0%
!! AACAGCATAATCTAAATTAA+TGG + chr1.2:12939424-12939443 None:intergenic 20.0%
!! AATGAAATTTATATCTATCG+TGG + chr1.2:12939560-12939541 None:intergenic 20.0%
!! ATAGATAAATATCAAACCAA+AGG + chr1.2:12941501-12941520 None:intergenic 20.0%
!! ATTAATTAAGAGTTAATCGA+AGG + chr1.2:12939512-12939531 None:intergenic 20.0%
!! CAACAATTATACACAAAAAA+TGG + chr1.2:12939028-12939047 None:intergenic 20.0%
!! GAAATAAGTAATAAGTTATG+TGG + chr1.2:12939776-12939795 None:intergenic 20.0%
!!! ACATTTTTGTTTTTGATTTC+AGG - chr1.2:12940303-12940322 MS.gene33879:intron 20.0%
!!! ACTCAATTTTCTTAAATGAT+CGG + chr1.2:12937474-12937493 None:intergenic 20.0%
!!! AGATTTCTTTAAGATAAATC+TGG - chr1.2:12940158-12940177 MS.gene33879:intron 20.0%
!!! ATATGTTTTGAAACTTTTGA+AGG - chr1.2:12939620-12939639 MS.gene33879:CDS 20.0%
!!! ATCTAATTTTTCAATCAGTT+GGG - chr1.2:12941927-12941946 MS.gene33879:intron 20.0%
!!! ATTACTTTGCTTTCATTTTA+TGG + chr1.2:12940991-12941010 None:intergenic 20.0%
!!! GATGATTTTCTCTATTTTTT+GGG - chr1.2:12942263-12942282 MS.gene33879:CDS 20.0%
!!! TATGTTTTGAAACTTTTGAA+GGG - chr1.2:12939621-12939640 MS.gene33879:CDS 20.0%
!!! TGATGATTTTCTCTATTTTT+TGG - chr1.2:12942262-12942281 MS.gene33879:CDS 20.0%
!!! TTAGTGAATCATTAATTTTC+TGG - chr1.2:12939596-12939615 MS.gene33879:CDS 20.0%
!!! TTATATTAATACCTTTTCAG+GGG - chr1.2:12942323-12942342 MS.gene33879:intron 20.0%
!!! TTTGTTTATCAATTTGGTTT+AGG - chr1.2:12937361-12937380 MS.gene33879:CDS 20.0%
! AAACCTTCAAATATTAACCA+CGG + chr1.2:12940194-12940213 None:intergenic 25.0%
! AACTCTAAATTAACGATAGA+TGG - chr1.2:12939398-12939417 MS.gene33879:intron 25.0%
! ACAGTACATAGATTTCAATA+TGG - chr1.2:12941758-12941777 MS.gene33879:intron 25.0%
! ACCAAATTGATAAACAAAAG+AGG + chr1.2:12937359-12937378 None:intergenic 25.0%
! ATACACAAAAAATGGATGAA+TGG + chr1.2:12939020-12939039 None:intergenic 25.0%
! ATATATTAACATTAATGCCG+TGG - chr1.2:12940000-12940019 MS.gene33879:intron 25.0%
! ATTTATACTGTTCTGTTGTA+TGG - chr1.2:12939459-12939478 MS.gene33879:intron 25.0%
! CAGGTTATTAAAACAAAAGA+AGG + chr1.2:12941610-12941629 None:intergenic 25.0%
! CAGTACATAGATTTCAATAT+GGG - chr1.2:12941759-12941778 MS.gene33879:intron 25.0%
! CATTCTAACAGTATTATAGT+CGG - chr1.2:12940027-12940046 MS.gene33879:intron 25.0%
! CATTGATGTTAATATTACCT+TGG + chr1.2:12939961-12939980 None:intergenic 25.0%
! CCAAATTGATAAACAAAAGA+GGG + chr1.2:12937358-12937377 None:intergenic 25.0%
! GAATAATTAAGCAAAAACGA+CGG + chr1.2:12937184-12937203 None:intergenic 25.0%
! GACAATGATAAAGAAAACAA+TGG - chr1.2:12941182-12941201 MS.gene33879:intron 25.0%
! GAGACTTATTAATTAAATGG+TGG + chr1.2:12937951-12937970 None:intergenic 25.0%
! GATGTAAAAGTAAAACTAAC+CGG + chr1.2:12941910-12941929 None:intergenic 25.0%
! GTGATAAATTCATCTTAATC+AGG - chr1.2:12939059-12939078 MS.gene33879:intron 25.0%
! TCTAATTAAACATAGTTGTG+TGG - chr1.2:12939143-12939162 MS.gene33879:CDS 25.0%
! TGTATATATTTACTCAATGC+AGG - chr1.2:12940825-12940844 MS.gene33879:intron 25.0%
!! ATACATAAAGCATCATTACT+CGG + chr1.2:12940081-12940100 None:intergenic 25.0%
!! ATTTTCCTTGGTTTACATTT+TGG + chr1.2:12938735-12938754 None:intergenic 25.0%
!! TTGCTTTCATTTTATGGTTA+GGG + chr1.2:12940985-12941004 None:intergenic 25.0%
!! TTTGCTTTCATTTTATGGTT+AGG + chr1.2:12940986-12941005 None:intergenic 25.0%
!!! ACATGAAATTTTGTTTCTTG+GGG - chr1.2:12939673-12939692 MS.gene33879:CDS 25.0%
!!! ATTTGAATGCTTATTTTCCT+TGG + chr1.2:12938747-12938766 None:intergenic 25.0%
!!! CAATTTGGTTTAGGTTTTTA+GGG - chr1.2:12937370-12937389 MS.gene33879:CDS 25.0%
!!! CACATGAAATTTTGTTTCTT+GGG - chr1.2:12939672-12939691 MS.gene33879:CDS 25.0%
!!! CATCTAATTTTTCAATCAGT+TGG - chr1.2:12941926-12941945 MS.gene33879:intron 25.0%
!!! CATTGATTTAGATTTAGAGA+TGG - chr1.2:12939483-12939502 MS.gene33879:intron 25.0%
!!! CCATTCAATTCAATTTTAGT+GGG - chr1.2:12937871-12937890 MS.gene33879:intron 25.0%
!!! CTAGTGACAATGATTTTTTA+TGG - chr1.2:12941988-12942007 MS.gene33879:intron 25.0%
!!! GAAGAAATGAAACTGATTTT+AGG + chr1.2:12938083-12938102 None:intergenic 25.0%
!!! GGTTTTGTTAATGTAATTGA+AGG - chr1.2:12937391-12937410 MS.gene33879:intron 25.0%
!!! TCAATTTGGTTTAGGTTTTT+AGG - chr1.2:12937369-12937388 MS.gene33879:CDS 25.0%
!!! TCACATGAAATTTTGTTTCT+TGG - chr1.2:12939671-12939690 MS.gene33879:CDS 25.0%
!!! TGGATTTTGACAGAAAATAT+TGG + chr1.2:12940602-12940621 None:intergenic 25.0%
AAAAAGAGTAATCTCTGCTA+AGG + chr1.2:12938292-12938311 None:intergenic 30.0%
AAAAGGAGCAAGAGAAAAAT+GGG - chr1.2:12941237-12941256 MS.gene33879:intron 30.0%
AACAGAACAGTATAAATCGA+AGG + chr1.2:12939456-12939475 None:intergenic 30.0%
AACCTTCAAATATTAACCAC+GGG + chr1.2:12940193-12940212 None:intergenic 30.0%
AAGCAAAAATTAGTGTATGC+AGG - chr1.2:12940427-12940446 MS.gene33879:intron 30.0%
AGCTTCACAGTATATTCAAA+TGG + chr1.2:12939906-12939925 None:intergenic 30.0%
ATAAACAAAAGAGGGCAAAA+TGG + chr1.2:12937350-12937369 None:intergenic 30.0%
ATCTATGAACATGCTTACTT+TGG + chr1.2:12940472-12940491 None:intergenic 30.0%
ATTTACTAACTTCTACCTGT+GGG - chr1.2:12940758-12940777 MS.gene33879:intron 30.0%
CAATCTCTCCTATTCTTAAT+TGG + chr1.2:12939191-12939210 None:intergenic 30.0%
CACTAAAATGGCTAATTCTA+CGG + chr1.2:12938059-12938078 None:intergenic 30.0%
CCCACTAAAATTGAATTGAA+TGG + chr1.2:12937874-12937893 None:intergenic 30.0%
GAAAAATCTCGTAAGAATGT+GGG - chr1.2:12940890-12940909 MS.gene33879:intron 30.0%
GGCGAGACTTATTAATTAAA+TGG + chr1.2:12937954-12937973 None:intergenic 30.0%
GTCAATACCAGTAAAAAGTA+GGG - chr1.2:12938147-12938166 MS.gene33879:CDS 30.0%
TAATTAATAAGTCTCGCCAT+TGG - chr1.2:12937956-12937975 MS.gene33879:intron 30.0%
TACCAATCAAGAATAAGTCT+CGG + chr1.2:12942125-12942144 None:intergenic 30.0%
TACTGTTAGAATGTAAACCA+CGG + chr1.2:12940020-12940039 None:intergenic 30.0%
TCATATCTTACTTGATCCAA+TGG + chr1.2:12937975-12937994 None:intergenic 30.0%
TGAAAAATCTCGTAAGAATG+TGG - chr1.2:12940889-12940908 MS.gene33879:intron 30.0%
TGAGTAAAATTGTGAAGTAC+CGG - chr1.2:12937489-12937508 MS.gene33879:intron 30.0%
TGAGTTAAAGATCTAAACCA+CGG + chr1.2:12941634-12941653 None:intergenic 30.0%
TTCTTGATTGGTATGTAATC+AGG - chr1.2:12942132-12942151 MS.gene33879:intron 30.0%
TTGAGTGCAATTACAAGTTT+CGG + chr1.2:12938501-12938520 None:intergenic 30.0%
TTTGCTAGCCAATTAAGAAT+AGG - chr1.2:12939180-12939199 MS.gene33879:CDS 30.0%
! AAATAGTTTGGAGTATAGTC+TGG - chr1.2:12940237-12940256 MS.gene33879:intron 30.0%
! ATAGTGGAAAAAAACTTGTC+TGG - chr1.2:12938012-12938031 MS.gene33879:intron 30.0%
! ATCACTATCGTGTTTTATGT+CGG + chr1.2:12937436-12937455 None:intergenic 30.0%
! GCCATTCAATTCAATTTTAG+TGG - chr1.2:12937870-12937889 MS.gene33879:intron 30.0%
! TAATTTAGAGTTAGCGATAG+TGG - chr1.2:12939221-12939240 MS.gene33879:intron 30.0%
! TCCTAAAGACTATAGTTTGT+TGG - chr1.2:12938655-12938674 MS.gene33879:CDS 30.0%
! TGCTTTCATTTTATGGTTAG+GGG + chr1.2:12940984-12941003 None:intergenic 30.0%
! TTTTTGTACCTGTATCATAC+CGG - chr1.2:12937733-12937752 MS.gene33879:CDS 30.0%
!! ATTTGTTGTTGGATTTGGAA+TGG - chr1.2:12937805-12937824 MS.gene33879:intron 30.0%
!! CCCTCTTTTGTTTATCAATT+TGG - chr1.2:12937355-12937374 MS.gene33879:CDS 30.0%
!! CCTAAAGACTATAGTTTGTT+GGG - chr1.2:12938656-12938675 MS.gene33879:CDS 30.0%
!! GTTACATTTGTTGTTGGATT+TGG - chr1.2:12937800-12937819 MS.gene33879:intron 30.0%
!! TTTGTTGTTGGATTTGGAAT+GGG - chr1.2:12937806-12937825 MS.gene33879:intron 30.0%
!! TTTTGTTTGTTTGAAACTGC+AGG - chr1.2:12937235-12937254 MS.gene33879:intron 30.0%
!!! ATTTTAGTGGGTTAGTTCTA+TGG - chr1.2:12937883-12937902 MS.gene33879:intron 30.0%
!!! CTGATTTTAGGACACTAAAA+TGG + chr1.2:12938071-12938090 None:intergenic 30.0%
!!! GACAAGTTTTTTTCCACTAT+TGG + chr1.2:12938012-12938031 None:intergenic 30.0%
AAAGAGGGCAAAATGGTAAA+AGG + chr1.2:12937343-12937362 None:intergenic 35.0%
AAAGGAGCAAGAGAAAAATG+GGG - chr1.2:12941238-12941257 MS.gene33879:intron 35.0%
AAGGCTATAACTAAGCCTTT+AGG + chr1.2:12941041-12941060 None:intergenic 35.0%
AAGGTTGTGTTTCAGAAGTT+TGG - chr1.2:12941422-12941441 MS.gene33879:intron 35.0%
AAGTAAAACTAACCGGTAAC+TGG + chr1.2:12941903-12941922 None:intergenic 35.0%
ACCAATCAAGAATAAGTCTC+GGG + chr1.2:12942124-12942143 None:intergenic 35.0%
ACTGTCAATGAAAGTGAAGA+TGG - chr1.2:12937311-12937330 MS.gene33879:intron 35.0%
AGAAGAGCCAAGAAAACAAT+GGG - chr1.2:12941291-12941310 MS.gene33879:intron 35.0%
AGGCTATAACTAAGCCTTTA+GGG + chr1.2:12941040-12941059 None:intergenic 35.0%
ATCCCGTGGTTAATATTTGA+AGG - chr1.2:12940188-12940207 MS.gene33879:intron 35.0%
ATCTGATGAGAACTCAACAA+GGG + chr1.2:12940386-12940405 None:intergenic 35.0%
CAGAAACAAAATGTCACATG+TGG + chr1.2:12939743-12939762 None:intergenic 35.0%
CATTTACTAACTTCTACCTG+TGG - chr1.2:12940757-12940776 MS.gene33879:intron 35.0%
CCCAACAAACTATAGTCTTT+AGG + chr1.2:12938659-12938678 None:intergenic 35.0%
CGTAATAGAGACAATGATTC+TGG - chr1.2:12942380-12942399 MS.gene33879:intron 35.0%
CGTCAATACCAGTAAAAAGT+AGG - chr1.2:12938146-12938165 MS.gene33879:CDS 35.0%
CTCATGTTTACCAGAATCAT+AGG + chr1.2:12940140-12940159 None:intergenic 35.0%
CTGAAATTCTAACTACACAG+TGG - chr1.2:12938821-12938840 MS.gene33879:intron 35.0%
CTTGTAATTGCACTCAATTC+TGG - chr1.2:12938504-12938523 MS.gene33879:CDS 35.0%
GAAAAGGAGCAAGAGAAAAA+TGG - chr1.2:12941236-12941255 MS.gene33879:intron 35.0%
GACAGTTTCTTCCTTAACAT+CGG + chr1.2:12938919-12938938 None:intergenic 35.0%
GCTTTCAATCAGACAAGTTT+CGG + chr1.2:12938444-12938463 None:intergenic 35.0%
GTGAAGCTGAAAAACAATAC+TGG - chr1.2:12942154-12942173 MS.gene33879:intron 35.0%
TATATTTACTCAATGCAGGC+AGG - chr1.2:12940829-12940848 MS.gene33879:intron 35.0%
TATTGTTACAGCTACCCTAA+AGG - chr1.2:12941023-12941042 MS.gene33879:intron 35.0%
TCACGTAAATATGAGAGTGA+AGG + chr1.2:12937842-12937861 None:intergenic 35.0%
TCACTCAAAACCAGAAAAAG+TGG + chr1.2:12937548-12937567 None:intergenic 35.0%
TCCTACCAAAATGTAAACCA+AGG - chr1.2:12938727-12938746 MS.gene33879:intron 35.0%
TCTATCCAAAGATGTGTTGT+GGG + chr1.2:12938240-12938259 None:intergenic 35.0%
TTACTCAAGAAATCATCCCT+GGG + chr1.2:12937290-12937309 None:intergenic 35.0%
TTTACTAACTTCTACCTGTG+GGG - chr1.2:12940759-12940778 MS.gene33879:intron 35.0%
TTTACTCAAGAAATCATCCC+TGG + chr1.2:12937291-12937310 None:intergenic 35.0%
! ACTTTTTGTCTCCAACATGA+CGG + chr1.2:12940348-12940367 None:intergenic 35.0%
! CTATAGTCTTTAGGAGAAGT+TGG + chr1.2:12938650-12938669 None:intergenic 35.0%
! CTTTGCTTTGTTCCTTCAAT+CGG - chr1.2:12938853-12938872 MS.gene33879:intron 35.0%
! GAGACTTTTTGATCCAATAG+TGG - chr1.2:12937996-12938015 MS.gene33879:intron 35.0%
! GTCACGTCATTATTCTTTTC+TGG + chr1.2:12941092-12941111 None:intergenic 35.0%
! TAACTACACAGTGGTTAGTT+TGG - chr1.2:12938830-12938849 MS.gene33879:intron 35.0%
! TGGTGATGTGAAGGTAAATA+TGG - chr1.2:12941442-12941461 MS.gene33879:intron 35.0%
! TTTTGTACCTGTATCATACC+GGG - chr1.2:12937734-12937753 MS.gene33879:CDS 35.0%
!! TATTAATACCTTTTCAGGGG+AGG - chr1.2:12942326-12942345 MS.gene33879:intron 35.0%
!! TCCTTGGTTTACATTTTGGT+AGG + chr1.2:12938731-12938750 None:intergenic 35.0%
!! TGAAACTTTTGAAGGGTAGA+TGG - chr1.2:12939628-12939647 MS.gene33879:CDS 35.0%
!! TGAACTGCTCTTTAGTTTGA+AGG + chr1.2:12941060-12941079 None:intergenic 35.0%
!!! CTCTATTTTTTGGGATCACT+GGG - chr1.2:12942272-12942291 MS.gene33879:CDS 35.0%
!!! GTTTTTTATAAAGGGATGCC+AGG + chr1.2:12940726-12940745 None:intergenic 35.0%
!!! TCTATTTTTTGGGATCACTG+GGG - chr1.2:12942273-12942292 MS.gene33879:CDS 35.0%
!!! TCTCTATTTTTTGGGATCAC+TGG - chr1.2:12942271-12942290 MS.gene33879:CDS 35.0%
!!! TTGTTTTAATAACCTGACCG+TGG - chr1.2:12941614-12941633 MS.gene33879:intron 35.0%
AAACGTTAGGACTCTGTTAG+TGG + chr1.2:12938415-12938434 None:intergenic 40.0%
AAATGGGGTGAAGGAAGAAA+AGG - chr1.2:12941253-12941272 MS.gene33879:intron 40.0%
AACCAAGAAGGTTATACGAC+AGG - chr1.2:12937151-12937170 MS.gene33879:CDS 40.0%
AACCTGTCGTATAACCTTCT+TGG + chr1.2:12937156-12937175 None:intergenic 40.0%
AACGTTAGGACTCTGTTAGT+GGG + chr1.2:12938414-12938433 None:intergenic 40.0%
AATCTGGTATTTGAATCCCG+TGG - chr1.2:12940174-12940193 MS.gene33879:intron 40.0%
AGTTTCTTCCTTAACATCGG+CGG + chr1.2:12938916-12938935 None:intergenic 40.0%
CACAACACATCTTTGGATAG+AGG - chr1.2:12938239-12938258 MS.gene33879:CDS 40.0%
CAGTGATAGTAATCTTCCCA+GGG - chr1.2:12937271-12937290 MS.gene33879:intron 40.0%
CATCTGATGAGAACTCAACA+AGG + chr1.2:12940387-12940406 None:intergenic 40.0%
CATTCTATTCGTGCATTCCA+GGG - chr1.2:12939799-12939818 MS.gene33879:intron 40.0%
CCAATCAAGAATAAGTCTCG+GGG + chr1.2:12942123-12942142 None:intergenic 40.0%
CTATCCAAAGATGTGTTGTG+GGG + chr1.2:12938239-12938258 None:intergenic 40.0%
CTCTATCCAAAGATGTGTTG+TGG + chr1.2:12938241-12938260 None:intergenic 40.0%
CTTAATCAGGCAACAGCAAT+AGG - chr1.2:12939072-12939091 MS.gene33879:intron 40.0%
CTTGGTGAAAAGTTGAAGCA+TGG - chr1.2:12940114-12940133 MS.gene33879:intron 40.0%
CTTTGACGCAGAAAGAGAAA+AGG - chr1.2:12940853-12940872 MS.gene33879:intron 40.0%
GAAAACAATGGAGTGAACGA+AGG - chr1.2:12941194-12941213 MS.gene33879:intron 40.0%
GAAGAGCCAAGAAAACAATG+GGG - chr1.2:12941292-12941311 MS.gene33879:intron 40.0%
GAGAAGAGCCAAGAAAACAA+TGG - chr1.2:12941290-12941309 MS.gene33879:intron 40.0%
GAGATGAGTCAGGATTCATT+CGG - chr1.2:12941781-12941800 MS.gene33879:intron 40.0%
GGAGACAAAAAGTTCTTCTG+TGG - chr1.2:12940355-12940374 MS.gene33879:intron 40.0%
GGTAGGATATCTCTGTAAGT+GGG + chr1.2:12938714-12938733 None:intergenic 40.0%
GTAGGATATCTCTGTAAGTG+GGG + chr1.2:12938713-12938732 None:intergenic 40.0%
GTGAGTGATTATGATTCTCC+TGG - chr1.2:12940705-12940724 MS.gene33879:intron 40.0%
TAAAGATCTAAACCACGGTC+AGG + chr1.2:12941629-12941648 None:intergenic 40.0%
TAATTGGCTAGCAAAGTGAG+AGG + chr1.2:12939175-12939194 None:intergenic 40.0%
TACTGTGAAGCTTGAAGAAG+TGG - chr1.2:12939914-12939933 MS.gene33879:intron 40.0%
TATTTGTGTTATCCTCCTCG+TGG + chr1.2:12940922-12940941 None:intergenic 40.0%
TCACTCAAGCTATCAGAAGA+TGG - chr1.2:12938972-12938991 MS.gene33879:intron 40.0%
TCAGTGATAGTAATCTTCCC+AGG - chr1.2:12937270-12937289 MS.gene33879:intron 40.0%
TCATTCTATTCGTGCATTCC+AGG - chr1.2:12939798-12939817 MS.gene33879:intron 40.0%
TCTGTGTACCTATGCAACAT+AGG - chr1.2:12937764-12937783 MS.gene33879:CDS 40.0%
TGACGAAGAAACAACCAAGA+AGG - chr1.2:12937139-12937158 MS.gene33879:CDS 40.0%
TGATGTGTCAGAATCGTGTA+AGG - chr1.2:12938546-12938565 MS.gene33879:intron 40.0%
TGGTAGGATATCTCTGTAAG+TGG + chr1.2:12938715-12938734 None:intergenic 40.0%
TTCAATATGGGAGATGAGTC+AGG - chr1.2:12941771-12941790 MS.gene33879:intron 40.0%
! AATAGGAGAGATTGCTGTTC+TGG - chr1.2:12939197-12939216 MS.gene33879:CDS 40.0%
! CATAAAGCATCATTACTCGG+AGG + chr1.2:12940078-12940097 None:intergenic 40.0%
! CTTTTTGTCTCCAACATGAC+GGG + chr1.2:12940347-12940366 None:intergenic 40.0%
! GATTTCAGGTCAACAGTGTT+CGG - chr1.2:12940317-12940336 MS.gene33879:intron 40.0%
! GGGTTTTTGCTCATCTGTTT+TGG + chr1.2:12941114-12941133 None:intergenic 40.0%
! GTCTGTTTGGTTCAAACAAG+AGG + chr1.2:12942101-12942120 None:intergenic 40.0%
! TAAGGTGTTCGTGTTTGTGT+CGG - chr1.2:12938564-12938583 MS.gene33879:intron 40.0%
! TAATCTCTGCTAAGGTGCTT+AGG + chr1.2:12938284-12938303 None:intergenic 40.0%
! TATCTTGTTTACCACGAAGC+TGG + chr1.2:12942182-12942201 None:intergenic 40.0%
! TCTGTTAGTGGGTAATCTGT+TGG + chr1.2:12938403-12938422 None:intergenic 40.0%
! TTTTTGTCTCCAACATGACG+GGG + chr1.2:12940346-12940365 None:intergenic 40.0%
!! AAAGTTTTAGCAACCGAGGA+AGG - chr1.2:12942211-12942230 MS.gene33879:intron 40.0%
!! AGAGAAAGTTTTAGCAACCG+AGG - chr1.2:12942207-12942226 MS.gene33879:intron 40.0%
!! CAAGTCTTGTTGTCAACGTT+GGG + chr1.2:12938602-12938621 None:intergenic 40.0%
!! CTGGCAGTTACATTTGTTGT+TGG - chr1.2:12937794-12937813 MS.gene33879:intron 40.0%
!! GATGCGAAAGCATCTTAAGT+TGG - chr1.2:12938875-12938894 MS.gene33879:intron 40.0%
!! GTAAAATTGTGAAGTACCGG+CGG - chr1.2:12937492-12937511 MS.gene33879:intron 40.0%
!! TCAAGTCTTGTTGTCAACGT+TGG + chr1.2:12938603-12938622 None:intergenic 40.0%
!! TCAATTACCTCTTCTGGCTT+GGG + chr1.2:12939852-12939871 None:intergenic 40.0%
!! TCAGAAGTTTGGTGATGTGA+AGG - chr1.2:12941433-12941452 MS.gene33879:intron 40.0%
!!! CTATTTTTTGGGATCACTGG+GGG - chr1.2:12942274-12942293 MS.gene33879:CDS 40.0%
!!! CTGTTTTTTTCCCAGTTTCC+TGG + chr1.2:12941355-12941374 None:intergenic 40.0%
AATAAGTCTCGGGGTCTGTT+TGG + chr1.2:12942114-12942133 None:intergenic 45.0%
ACCTGCTCAATTACCTCTTC+TGG + chr1.2:12939858-12939877 None:intergenic 45.0%
ACTTGAATATACGCCCTTGC+GGG - chr1.2:12938617-12938636 MS.gene33879:CDS 45.0%
AGAGACAATGATTCTGGACG+AGG - chr1.2:12942386-12942405 MS.gene33879:CDS 45.0%
AGGTACACAGATACAGTACC+CGG + chr1.2:12937755-12937774 None:intergenic 45.0%
ATGCAACATAGGTCGATGTC+TGG - chr1.2:12937775-12937794 MS.gene33879:CDS 45.0%
ATGCTTTCGCATCCGATTGA+AGG + chr1.2:12938868-12938887 None:intergenic 45.0%
CAATCCCCACAACACATCTT+TGG - chr1.2:12938232-12938251 MS.gene33879:CDS 45.0%
CAATCGAGTCACAACGACTA+GGG + chr1.2:12938177-12938196 None:intergenic 45.0%
CAATGGAGTGAACGAAGGAA+AGG - chr1.2:12941199-12941218 MS.gene33879:intron 45.0%
CCCCGAGACTTATTCTTGAT+TGG - chr1.2:12942120-12942139 MS.gene33879:intron 45.0%
CTAGAGCTTTGCAAAGAGAG+TGG + chr1.2:12939279-12939298 None:intergenic 45.0%
CTATGGTGCACAAGTGAGAT+AGG - chr1.2:12937900-12937919 MS.gene33879:intron 45.0%
CTGTTGGGACTTTCTTCCTT+TGG - chr1.2:12941482-12941501 MS.gene33879:intron 45.0%
CTTCTTCGGTCAATATGCCA+AGG - chr1.2:12939941-12939960 MS.gene33879:intron 45.0%
CTTGGCATATTGACCGAAGA+AGG + chr1.2:12939943-12939962 None:intergenic 45.0%
GAAGAAGTGGAGTCCTTCTT+CGG - chr1.2:12939927-12939946 MS.gene33879:intron 45.0%
GACATCGACCTATGTTGCAT+AGG + chr1.2:12937775-12937794 None:intergenic 45.0%
GACTTGAATATACGCCCTTG+CGG - chr1.2:12938616-12938635 MS.gene33879:CDS 45.0%
GCAAGAGAAAAATGGGGTGA+AGG - chr1.2:12941244-12941263 MS.gene33879:intron 45.0%
GCTACTCTAGATCCAGTTAC+CGG - chr1.2:12941888-12941907 MS.gene33879:intron 45.0%
GTCGACTACAACAGCATAGA+AGG + chr1.2:12939257-12939276 None:intergenic 45.0%
GTTGTGACTCGATTGGTAAG+CGG - chr1.2:12938182-12938201 MS.gene33879:CDS 45.0%
GTTTCTTCCTTAACATCGGC+GGG + chr1.2:12938915-12938934 None:intergenic 45.0%
TACAGTACCCGGTATGATAC+AGG + chr1.2:12937744-12937763 None:intergenic 45.0%
TGAAGCATGGCCTATGATTC+TGG - chr1.2:12940127-12940146 MS.gene33879:intron 45.0%
TGTCAGACACAGACATGTGT+TGG + chr1.2:12938478-12938497 None:intergenic 45.0%
! CTCAATTACCTCTTCTGGCT+TGG + chr1.2:12939853-12939872 None:intergenic 45.0%
! GTTTCGGTGCAACAAACGTT+AGG + chr1.2:12938428-12938447 None:intergenic 45.0%
!! AGTTTGTTGGGATGCTCTGT+GGG - chr1.2:12938668-12938687 MS.gene33879:CDS 45.0%
!! TAATACCTTTTCAGGGGAGG+AGG - chr1.2:12942329-12942348 MS.gene33879:intron 45.0%
!! TAGTTTGTTGGGATGCTCTG+TGG - chr1.2:12938667-12938686 MS.gene33879:CDS 45.0%
!!! GGGTTTGCCCTACTTTTTAC+TGG + chr1.2:12938157-12938176 None:intergenic 45.0%
!! ATATTATTATAATTTCTTAT+AGG - chr1.2:12940554-12940573 MS.gene33879:intron 5.0%
!!! AATATATATTTTTTTTTTGA+AGG + chr1.2:12939987-12940006 None:intergenic 5.0%
!!! ATTTTTAAAAAATTAAAGTA+TGG + chr1.2:12937705-12937724 None:intergenic 5.0%
!!! TTTTTAAAAAATTAAAGTAT+GGG + chr1.2:12937704-12937723 None:intergenic 5.0%
AACGAAGGAAAGGAGGCTGA+AGG - chr1.2:12941209-12941228 MS.gene33879:intron 50.0%
AAGTCCCAACAGCTGGAGAA+CGG + chr1.2:12941474-12941493 None:intergenic 50.0%
AGCCAAGAAAACAATGGGGC+AGG - chr1.2:12941296-12941315 MS.gene33879:intron 50.0%
AGGAAGAAAGTCCCAACAGC+TGG + chr1.2:12941481-12941500 None:intergenic 50.0%
ATCTCTGTAAGTGGGGCCTT+TGG + chr1.2:12938706-12938725 None:intergenic 50.0%
CACAGACATGTGTTGGACAC+TGG + chr1.2:12938471-12938490 None:intergenic 50.0%
CCAATCGAGTCACAACGACT+AGG + chr1.2:12938178-12938197 None:intergenic 50.0%
CCTAGTCGTTGTGACTCGAT+TGG - chr1.2:12938175-12938194 MS.gene33879:CDS 50.0%
CTTGAATATACGCCCTTGCG+GGG - chr1.2:12938618-12938637 MS.gene33879:CDS 50.0%
GAAAACAATGGGGCAGGTGA+AGG - chr1.2:12941302-12941321 MS.gene33879:intron 50.0%
GCATCATTACTCGGAGGCTA+AGG + chr1.2:12940072-12940091 None:intergenic 50.0%
GCCAGAAGAGGTAATTGAGC+AGG - chr1.2:12939854-12939873 MS.gene33879:intron 50.0%
GGTGAAGGAAAGGTGACTGA+AGG - chr1.2:12941317-12941336 MS.gene33879:intron 50.0%
TACTAAGCCCGCCGATGTTA+AGG - chr1.2:12938905-12938924 MS.gene33879:intron 50.0%
TAGCAACCGAGGAAGGTAAG+TGG - chr1.2:12942218-12942237 MS.gene33879:intron 50.0%
TCCTCAGCAGCAACTTCAGA+GGG + chr1.2:12941134-12941153 None:intergenic 50.0%
TGAACTTCCCAAGCCAGAAG+AGG - chr1.2:12939842-12939861 MS.gene33879:intron 50.0%
TGCATTCCAGGGAGCAAAGT+TGG - chr1.2:12939810-12939829 MS.gene33879:intron 50.0%
TGGAGTGAACGAAGGAAAGG+AGG - chr1.2:12941202-12941221 MS.gene33879:intron 50.0%
TGTGTTATCCTCCTCGTGGT+TGG + chr1.2:12940918-12940937 None:intergenic 50.0%
TTAGGTGAGTTGCGTCCCTT+TGG - chr1.2:12938326-12938345 MS.gene33879:CDS 50.0%
TTCCTCAGCAGCAACTTCAG+AGG + chr1.2:12941135-12941154 None:intergenic 50.0%
TTTCCCGTTCTCCAGCTGTT+GGG - chr1.2:12941467-12941486 MS.gene33879:intron 50.0%
! CACCTGCCCCATTGTTTTCT+TGG + chr1.2:12941301-12941320 None:intergenic 50.0%
! GTTTGTTGGGATGCTCTGTG+GGG - chr1.2:12938669-12938688 MS.gene33879:CDS 50.0%
! TAAGCCCCCCTTTTCCGAAA+GGG + chr1.2:12941850-12941869 None:intergenic 50.0%
! TGTTTGTGTCGGTGCTTCAC+AGG - chr1.2:12938575-12938594 MS.gene33879:intron 50.0%
! TTTTCCCGTTCTCCAGCTGT+TGG - chr1.2:12941466-12941485 MS.gene33879:intron 50.0%
!! CAGGCGCTGAGCTAGAATTA+AGG - chr1.2:12940446-12940465 MS.gene33879:intron 50.0%
!! CCAGAAAAAGTGGAGTACCG+CGG + chr1.2:12937538-12937557 None:intergenic 50.0%
!! GTGACTGAAGGTGCCGAAAA+GGG - chr1.2:12941329-12941348 MS.gene33879:intron 50.0%
AAGACTGTCTTACGCCCCAC+AGG + chr1.2:12940776-12940795 None:intergenic 55.0%
ACCTTCCTCCTCCCCTGAAA+AGG + chr1.2:12942337-12942356 None:intergenic 55.0%
AGTCCCAACAGCTGGAGAAC+GGG + chr1.2:12941473-12941492 None:intergenic 55.0%
ATCCTGCCAACTTTGCTCCC+TGG + chr1.2:12939819-12939838 None:intergenic 55.0%
ATTAGCAGTCCTCCCCCACA+AGG + chr1.2:12938212-12938231 None:intergenic 55.0%
CAATACTGGAGCCAGCTTCG+TGG - chr1.2:12942168-12942187 MS.gene33879:intron 55.0%
CAATGGGGCAGGTGAAGGAA+AGG - chr1.2:12941307-12941326 MS.gene33879:intron 55.0%
CCGAAAAGGGCCAGGAAACT+GGG - chr1.2:12941342-12941361 MS.gene33879:intron 55.0%
CCTGACCCTAGTCAGCCAAA+GGG + chr1.2:12938344-12938363 None:intergenic 55.0%
CCTTTGGCTGACTAGGGTCA+GGG - chr1.2:12938342-12938361 MS.gene33879:CDS 55.0%
CGTGCTTTCTGAGCAGCTTC+AGG + chr1.2:12941816-12941835 None:intergenic 55.0%
CTGCAGCCCTTTCGGAAAAG+GGG - chr1.2:12941841-12941860 MS.gene33879:intron 55.0%
GAATGTGGGTTCCAACCACG+AGG - chr1.2:12940904-12940923 MS.gene33879:intron 55.0%
GCTGCAGCCCTTTCGGAAAA+GGG - chr1.2:12941840-12941859 MS.gene33879:intron 55.0%
GGAGGCTGAAGGCGAAGAAA+AGG - chr1.2:12941220-12941239 MS.gene33879:intron 55.0%
TGCAGCCCTTTCGGAAAAGG+GGG - chr1.2:12941842-12941861 MS.gene33879:intron 55.0%
TGCGTCCCTTTGGCTGACTA+GGG - chr1.2:12938336-12938355 MS.gene33879:CDS 55.0%
TGCTGCAGCCCTTTCGGAAA+AGG - chr1.2:12941839-12941858 MS.gene33879:intron 55.0%
TGGTAAGCGGCTGACCTTGT+GGG - chr1.2:12938195-12938214 MS.gene33879:CDS 55.0%
TTCAGGGGAGGAGGAAGGTA+TGG - chr1.2:12942338-12942357 MS.gene33879:intron 55.0%
TTCCAGGGAGCAAAGTTGGC+AGG - chr1.2:12939814-12939833 MS.gene33879:intron 55.0%
TTGCGTCCCTTTGGCTGACT+AGG - chr1.2:12938335-12938354 MS.gene33879:CDS 55.0%
TTGGTAAGCGGCTGACCTTG+TGG - chr1.2:12938194-12938213 MS.gene33879:CDS 55.0%
! AAGTTGGCTCATACCCCGCA+AGG + chr1.2:12938634-12938653 None:intergenic 55.0%
! AGTTGGCTCATACCCCGCAA+GGG + chr1.2:12938633-12938652 None:intergenic 55.0%
! CCCAGTTTCCTGGCCCTTTT+CGG + chr1.2:12941345-12941364 None:intergenic 55.0%
! CTAAGCCCCCCTTTTCCGAA+AGG + chr1.2:12941851-12941870 None:intergenic 55.0%
! GGAGGAAGGTATGGTAGAGG+AGG - chr1.2:12942347-12942366 MS.gene33879:intron 55.0%
! GGAGGAGGAAGGTATGGTAG+AGG - chr1.2:12942344-12942363 MS.gene33879:intron 55.0%
!! ACCCTCTGAAGTTGCTGCTG+AGG - chr1.2:12941130-12941149 MS.gene33879:intron 55.0%
!! ACCTTTTCAGGGGAGGAGGA+AGG - chr1.2:12942333-12942352 MS.gene33879:intron 55.0%
!! GGTGACTGAAGGTGCCGAAA+AGG - chr1.2:12941328-12941347 MS.gene33879:intron 55.0%
!! TGCGTGCCACTTACCTTCCT+CGG + chr1.2:12942227-12942246 None:intergenic 55.0%
!!! CCGCGGTACTCCACTTTTTC+TGG - chr1.2:12937535-12937554 MS.gene33879:intron 55.0%
CCCTGACCCTAGTCAGCCAA+AGG + chr1.2:12938345-12938364 None:intergenic 60.0%
CCCTTTGGCTGACTAGGGTC+AGG - chr1.2:12938341-12938360 MS.gene33879:CDS 60.0%
GCAGCCCTTTCGGAAAAGGG+GGG - chr1.2:12941843-12941862 MS.gene33879:intron 60.0%
GCCGAAAAGGGCCAGGAAAC+TGG - chr1.2:12941341-12941360 MS.gene33879:intron 60.0%
GGTAAGCGGCTGACCTTGTG+GGG - chr1.2:12938196-12938215 MS.gene33879:CDS 60.0%
GTAAGCGGCTGACCTTGTGG+GGG - chr1.2:12938197-12938216 MS.gene33879:CDS 60.0%
GTTCGGTTGCCCCGTCATGT+TGG - chr1.2:12940334-12940353 MS.gene33879:intron 60.0%
TAGGGTCAGGGTAGGCCTCA+AGG - chr1.2:12938354-12938373 MS.gene33879:CDS 60.0%
TCAGCGCTCTGTGAGCCTTG+AGG + chr1.2:12938372-12938391 None:intergenic 60.0%
TGGCTGACTAGGGTCAGGGT+AGG - chr1.2:12938346-12938365 MS.gene33879:CDS 60.0%
TGGGGCCACTGTGCTACCAA+AGG - chr1.2:12938687-12938706 MS.gene33879:CDS 60.0%
TGTGGGTTCCAACCACGAGG+AGG - chr1.2:12940907-12940926 MS.gene33879:intron 60.0%
! ACGTGCTGCTGCAGCCCTTT+CGG - chr1.2:12941833-12941852 MS.gene33879:intron 60.0%
! TGGGGCCTTTGGTAGCACAG+TGG + chr1.2:12938695-12938714 None:intergenic 60.0%
!! AAGTGGAGTACCGCGGTACC+AGG + chr1.2:12937531-12937550 None:intergenic 60.0%
!! TGAAGGTGCCGAAAAGGGCC+AGG - chr1.2:12941334-12941353 MS.gene33879:intron 60.0%
CAGGTACGTGCCTGGTACCG+CGG - chr1.2:12937518-12937537 MS.gene33879:intron 65.0%
!! TGTGAAGTACCGGCGGTGCC+AGG - chr1.2:12937499-12937518 MS.gene33879:intron 65.0%
AGCGGCTGACCTTGTGGGGG+AGG - chr1.2:12938200-12938219 MS.gene33879:CDS 70.0%
AGGCACGTACCTGGCACCGC+CGG + chr1.2:12937511-12937530 None:intergenic 70.0%
CGCGGTACCAGGCACGTACC+TGG + chr1.2:12937520-12937539 None:intergenic 70.0%
! GGCGGTGCCAGGTACGTGCC+TGG - chr1.2:12937510-12937529 MS.gene33879:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 12937122 12942436 12937122 ID=MS.gene33879
chr1.2 mRNA 12937122 12942436 12937122 ID=MS.gene33879.t1;Parent=MS.gene33879
chr1.2 exon 12942386 12942436 12942386 ID=MS.gene33879.t1.exon1;Parent=MS.gene33879.t1
chr1.2 CDS 12942386 12942436 12942386 ID=cds.MS.gene33879.t1;Parent=MS.gene33879.t1
chr1.2 exon 12942223 12942301 12942223 ID=MS.gene33879.t1.exon2;Parent=MS.gene33879.t1
chr1.2 CDS 12942223 12942301 12942223 ID=cds.MS.gene33879.t1;Parent=MS.gene33879.t1
chr1.2 exon 12940565 12940717 12940565 ID=MS.gene33879.t1.exon3;Parent=MS.gene33879.t1
chr1.2 CDS 12940565 12940717 12940565 ID=cds.MS.gene33879.t1;Parent=MS.gene33879.t1
chr1.2 exon 12939596 12939738 12939596 ID=MS.gene33879.t1.exon4;Parent=MS.gene33879.t1
chr1.2 CDS 12939596 12939738 12939596 ID=cds.MS.gene33879.t1;Parent=MS.gene33879.t1
chr1.2 exon 12939085 12939233 12939085 ID=MS.gene33879.t1.exon5;Parent=MS.gene33879.t1
chr1.2 CDS 12939085 12939233 12939085 ID=cds.MS.gene33879.t1;Parent=MS.gene33879.t1
chr1.2 exon 12938607 12938711 12938607 ID=MS.gene33879.t1.exon6;Parent=MS.gene33879.t1
chr1.2 CDS 12938607 12938711 12938607 ID=cds.MS.gene33879.t1;Parent=MS.gene33879.t1
chr1.2 exon 12938104 12938524 12938104 ID=MS.gene33879.t1.exon7;Parent=MS.gene33879.t1
chr1.2 CDS 12938104 12938524 12938104 ID=cds.MS.gene33879.t1;Parent=MS.gene33879.t1
chr1.2 exon 12937649 12937796 12937649 ID=MS.gene33879.t1.exon8;Parent=MS.gene33879.t1
chr1.2 CDS 12937649 12937796 12937649 ID=cds.MS.gene33879.t1;Parent=MS.gene33879.t1
chr1.2 exon 12937326 12937404 12937326 ID=MS.gene33879.t1.exon9;Parent=MS.gene33879.t1
chr1.2 CDS 12937326 12937404 12937326 ID=cds.MS.gene33879.t1;Parent=MS.gene33879.t1
chr1.2 exon 12937122 12937215 12937122 ID=MS.gene33879.t1.exon10;Parent=MS.gene33879.t1
chr1.2 CDS 12937122 12937215 12937122 ID=cds.MS.gene33879.t1;Parent=MS.gene33879.t1
Gene Sequence

>MS.gene33879

ATGGCGAAACATTCTCTTGACGAAGAAACAACCAAGAAGGTTATACGACAGGTTAGTAACCGTCGTTTTTGCTTAATTATTCAACTCTTATGTCGTTTTGATTTATCTTAATTTTTTGTTTGTTTGAAACTGCAGGTTGAATTTTATTTCAGTGATAGTAATCTTCCCAGGGATGATTTCTTGAGTAAAACTGTCAATGAAAGTGAAGATGGAAGTATCCTTTTACCATTTTGCCCTCTTTTGTTTATCAATTTGGTTTAGGTTTTTAGGGTTTTGTTAATGTAATTGAAGGTAGTTAAAACTATTTAATGCCGACATAAAACACGATAGTGATAGTTACATGTAGATACCGATCATTTAAGAAAATTGAGTAAAATTGTGAAGTACCGGCGGTGCCAGGTACGTGCCTGGTACCGCGGTACTCCACTTTTTCTGGTTTTGAGTGAAATTTGTAGCTTTCTCTAATTTTTTTACTTTTTTTAATTTTATTTCGATGTTTTTGTTGTAAATTGAACATTTTAGTTCTCTCATGTTATATTATATAACTAAACTTTTTTTTTTTTTTTTTTTATTGATGTACCCATACTTTAATTTTTTAAAAATTGCTGTATTTTTTGTACCTGTATCATACCGGGTACTGTATCTGTGTACCTATGCAACATAGGTCGATGTCTGGCAGTTACATTTGTTGTTGGATTTGGAATGGGTATGCGTATGCCTTCACTCTCATATTTACGTGAAAAATCAAGCCATTCAATTCAATTTTAGTGGGTTAGTTCTATGGTGCACAAGTGAGATAGGTGTTGTATCATATATAAGTTTATTTCCACCATTTAATTAATAAGTCTCGCCATTGGATCAAGTAAGATATGATGAGACTTTTTGATCCAATAGTGGAAAAAAACTTGTCTGGTTCAACACTATTAGTTGTGTGCCGTAGAATTAGCCATTTTAGTGTCCTAAAATCAGTTTCATTTCTTCAATTCAACATAACAAACATAAAAAGAGAAAGAAGTTTTCATTTCGTCAATACCAGTAAAAAGTAGGGCAAACCCTAGTCGTTGTGACTCGATTGGTAAGCGGCTGACCTTGTGGGGGAGGACTGCTAATCAATCCCCACAACACATCTTTGGATAGAGGTAAAGAGTTTAAGTTGCAACCTAAGCACCTTAGCAGAGATTACTCTTTTTTTATAGAAAAATGTTTAGGTGAGTTGCGTCCCTTTGGCTGACTAGGGTCAGGGTAGGCCTCAAGGCTCACAGAGCGCTGACAAAAGTACCAACAGATTACCCACTAACAGAGTCCTAACGTTTGTTGCACCGAAACTTGTCTGATTGAAAGCGTTTCCAGTGTCCAACACATGTCTGTGTCTGACACCGAAACTTGTAATTGCACTCAATTCTGGTATTTTCTCAAATTACTGTTGATGTGTCAGAATCGTGTAAGGTGTTCGTGTTTGTGTCGGTGCTTCACAGGTCCCAACGTTGACAACAAGACTTGAATATACGCCCTTGCGGGGTATGAGCCAACTTCTCCTAAAGACTATAGTTTGTTGGGATGCTCTGTGGGGCCACTGTGCTACCAAAGGCCCCACTTACAGAGATATCCTACCAAAATGTAAACCAAGGAAAATAAGCATTCAAATTTCTTCTCATTTGATCAATGCTAAACATGTTTTTGTTTTCGTTGTTGATCTTAACTGAAATTCTAACTACACAGTGGTTAGTTTGGCTTTGCTTTGTTCCTTCAATCGGATGCGAAAGCATCTTAAGTTGGCTGATGATACTAAGCCCGCCGATGTTAAGGAAGAAACTGTCAAAGCTGTTGCTGAAGTTTTGAAAAATGCTGCTTCACTCAAGCTATCAGAAGATGGTCAGTTTGTTTCTCTTTCGAATCCATTCATCCATTTTTTGTGTATAATTGTTGTATTTAGTTTTGTGATAAATTCATCTTAATCAGGCAACAGCAATAGGTTATTTATTTGTGCTATTCATGATTAAAGAATCTATATTACTGCAACTTCTAATTAAACATAGTTGTGTGGTTTCTTCCTCTCACTTTGCTAGCCAATTAAGAATAGGAGAGATTGCTGTTCTGGTTAATTTAGAGTTAGCGATAGTGGTTTTCTTTCACCTTCTATGCTGTTGTAGTCGACCACTCTCTTTGCAAAGCTCTAGTAACTATATTTATATGAATCTCTTATTTCTACAACGTTTATATTTTTAACGATGAAAGGACTTGTATTGTCATAAATTTCATGTTTTGAAATTATTGCTAACTCTAAATTAACGATAGATGGCCATTAATTTAGATTATGCTGTTCTATGATCACCTTCGATTTATACTGTTCTGTTGTATGGTCATTGATTTAGATTTAGAGATGGTTACCTTCGATTAACTCTTAATTAATGATCCACTAAATGAAATTTATATCTATCGTTAATTAAGAAAACCACGATAGATATAAATTTCATTTAGTGAATCATTAATTTTCTGGAATATGTTTTGAAACTTTTGAAGGGTAGATGGTCATAAATTTAGTTTATTTCTCACATGAAATTTTGTTTCTTGGGGTGAGTAAGACTAAGATTGAAAAAGAAAAAAAAAGACATATTCAACCACATGTGACATTTTGTTTCTGTGTTGAATGACCACATAACTTATTACTTATTTCTGTCATTCTATTCGTGCATTCCAGGGAGCAAAGTTGGCAGGATTACTGAACTTCCCAAGCCAGAAGAGGTAATTGAGCAGGTTGAGATAAGAACGATTGCTGCATCACCATTTGAATATACTGTGAAGCTTGAAGAAGTGGAGTCCTTCTTCGGTCAATATGCCAAGGTAATATTAACATCAATGCTTCCTTCAAAAAAAAAATATATATTAACATTAATGCCGTGGTTTACATTCTAACAGTATTATAGTCGGAATGCATCATGTTTGCTAACCTTAGCCTCCGAGTAATGATGCTTTATGTATATTCATTAAATTTCTTGGTGAAAAGTTGAAGCATGGCCTATGATTCTGGTAAACATGAGATTTCTTTAAGATAAATCTGGTATTTGAATCCCGTGGTTAATATTTGAAGGTTTTAGATTATATATTTATTTAACAAAAATAGTTTGGAGTATAGTCTGGTATTATAAAAAATACTTATTTATTTTGTAGAACAAAAAATGTAACATTTTTGTTTTTGATTTCAGGTCAACAGTGTTCGGTTGCCCCGTCATGTTGGAGACAAAAAGTTCTTCTGTGGTACTGCCCTTGTTGAGTTCTCATCAGATGAAGAAATGCAAAATGTTTTGAAGCAAAAATTAGTGTATGCAGGCGCTGAGCTAGAATTAAGGCCAAAGTAAGCATGTTCATAGATTCAATTCTGAGTTACTGACTGTTGATGAATTTTAGTGAAATAAAGTTTTTTTTTTCTGCTGTATATTATTATAATTTCTTATAGGAAGAAAATTAAGAGTATATAATCCAATATTTTCTGTCAAAATCCATTTGACAAATACATATATTACAATAAGCGTCAATTAATATCTATATTTATTAAAAAACTGTAATTGATGGTAGTTGCTTTAGAGTGAGTGATTATGATTCTCCTGGCATCCCTTTATAAAAAACTTCAATTTCTGCATTTACTAACTTCTACCTGTGGGGCGTAAGACAGTCTTGTCTATATGCATATATTGTCTAATAATATTGTATATATTTACTCAATGCAGGCAGGACTTTGACGCAGAAAGAGAAAAGGAATTAGAAAAGCATGAAAAATCTCGTAAGAATGTGGGTTCCAACCACGAGGAGGATAACACAAATACAGAAGAAGAGTAAGATTCTGAAATTCTTTTAATCTTTACCCCTAACCATAAAATGAAAGCAAAGTAATTGACTTCATTTGTATTGTTACAGCTACCCTAAAGGCTTAGTTATAGCCTTCAAACTAAAGAGCAGTTCAGATGAAGTTCCAGAAAAGAATAATGACGTGACCAAAACAGATGAGCAAAAACCCTCTGAAGTTGCTGCTGAGGAAAGTGATCAAAAGATGTCAGAAAATGATGACAATGATAAAGAAAACAATGGAGTGAACGAAGGAAAGGAGGCTGAAGGCGAAGAAAAGGAGCAAGAGAAAAATGGGGTGAAGGAAGAAAAGGAGACTGAAGTTGAAGAGAAGAGCCAAGAAAACAATGGGGCAGGTGAAGGAAAGGTGACTGAAGGTGCCGAAAAGGGCCAGGAAACTGGGAAAAAAACAGCTGTTATTTTCAAGAACGACTCAGATGTTGTCTTACGTGAAGATTTGAAGGTTGTGTTTCAGAAGTTTGGTGATGTGAAGGTAAATATGGATTTTCCCGTTCTCCAGCTGTTGGGACTTTCTTCCTTTGGTTTGATATTTATCTATGACTTCATAGCTATCTATTATTGTTTAAAACTCTTGTCTTTTTTTTATTTATTTGGATTTCTTAGCACTTTTGAAAGATACAGTTTCCTTCTTTTGTTTTAATAACCTGACCGTGGTTTAGATCTTTAACTCACATTACTAAAAAATAACTTTCTGAATTATCTTTGCTAAGAATTGACTTTTTGAAATTTTCTTTGCTTAAGACATGTATATTGATGTTATATTCATGTTTATTGCACAGTACATAGATTTCAATATGGGAGATGAGTCAGGATTCATTCGGTTTGATGAACCTGAAGCTGCTCAGAAAGCACGTGCTGCTGCAGCCCTTTCGGAAAAGGGGGGCTTAGTTGTGAAGAATTATATTGCTACTCTAGATCCAGTTACCGGTTAGTTTTACTTTTACATCTAATTTTTCAATCAGTTGGGTTTCATGTGTTAATTATTGTATTTTTCTTTTAATGTTTCTAGTGACAATGATTTTTTATGGAAAAAATGCACGCTTCATTTCATGAGAATTTAAAATTTCACAAAATGTTCTAATATTTAAAATGTAAATTGATATCTCATTAAATATCCTCTTGTTTGAACCAAACAGACCCCGAGACTTATTCTTGATTGGTATGTAATCAGGTGAAGCTGAAAAACAATACTGGAGCCAGCTTCGTGGTAAACAAGATATACGCAGAGAAAGTTTTAGCAACCGAGGAAGGTAAGTGGCACGCAACTATCTCTTAACCTTGATGATTTTCTCTATTTTTTGGGATCACTGGGGGTAGTGAAACTCAAACTAGAATACTAATTATATTAATACCTTTTCAGGGGAGGAGGAAGGTATGGTAGAGGAGGCAAATTTTCGCGTAATAGAGACAATGATTCTGGACGAGGTCGCCAAAATAAATATAGAAAGTATTAA

Protein sequence

>MS.gene33879.t1

MAKHSLDEETTKKVIRQVEFYFSDSNLPRDDFLSKTVNESEDGMVSLALLCSFNRMRKHLKLADDTKPADVKEETVKAVAEVLKNAASLKLSEDGSKVGRITELPKPEEVIEQVEIRTIAASPFEYTVKLEEVESFFGQYAKVNSVRLPRHVGDKKFFCGTALVEFSSDEEMQNVLKQKLVYAGAELELRPKQDFDAEREKELEKHEKSRKNVGSNHEEDNTNTEEDYPKGLVIAFKLKSSSDEVPEKNNDVTKTDEQKPSEVAAEESDQKMSENDDNDKENNGVNEGKEAEGEEKEQEKNGVKEEKETEVEEKSQENNGAGEGKVTEGAEKGQETGKKTAVIFKNDSDVVLREDLKVVFQKFGDVKYIDFNMGDESGFIRFDEPEAAQKARAAAALSEKGGLVVKNYIATLDPVTGEAEKQYWSQLRGKQDIRRESFSNRGRGGGRYGRGGKFSRNRDNDSGRGRQNKYRKY