Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007737.t1 | XP_013455924.1 | 98.2 | 649 | 12 | 0 | 71 | 719 | 112 | 760 | 0.00E+00 | 1261.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007737.t1 | Q42572 | 73.7 | 616 | 162 | 0 | 104 | 719 | 158 | 773 | 4.7e-270 | 931.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007737.t1 | A0A072UVT2 | 98.2 | 649 | 12 | 0 | 71 | 719 | 112 | 760 | 0.0e+00 | 1261.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007737 | MS.gene49838 | PPI |
| MS.gene005245 | MS.gene007737 | PPI |
| MS.gene007737 | MS.gene005383 | PPI |
| MS.gene007737 | MS.gene071460 | PPI |
| MS.gene21089 | MS.gene007737 | PPI |
| MS.gene007737 | MS.gene04079 | PPI |
| MS.gene007737 | MS.gene90359 | PPI |
| MS.gene87898 | MS.gene007737 | PPI |
| MS.gene007737 | MS.gene04418 | PPI |
| MS.gene007737 | MS.gene55626 | PPI |
| MS.gene007737 | MS.gene82109 | PPI |
| MS.gene007737 | MS.gene47284 | PPI |
| MS.gene007737 | MS.gene056051 | PPI |
| MS.gene79799 | MS.gene007737 | PPI |
| MS.gene007737 | MS.gene071456 | PPI |
| MS.gene05640 | MS.gene007737 | PPI |
| MS.gene007737 | MS.gene90358 | PPI |
| MS.gene007737 | MS.gene042871 | PPI |
| MS.gene08109 | MS.gene007737 | PPI |
| MS.gene20956 | MS.gene007737 | PPI |
| MS.gene007737 | MS.gene066960 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007737.t1 | MTR_4g057345 | 98.192 | 719 | 12 | 1 | 1 | 719 | 43 | 760 | 0.0 | 1449 |
| MS.gene007737.t1 | MTR_4g057340 | 84.072 | 722 | 106 | 3 | 1 | 719 | 1 | 716 | 0.0 | 1231 |
| MS.gene007737.t1 | MTR_8g468400 | 67.227 | 714 | 210 | 6 | 14 | 719 | 1 | 698 | 0.0 | 956 |
| MS.gene007737.t1 | MTR_7g082860 | 38.941 | 642 | 362 | 10 | 107 | 723 | 765 | 1401 | 6.93e-157 | 491 |
| MS.gene007737.t1 | MTR_7g082860 | 37.500 | 648 | 350 | 12 | 107 | 723 | 765 | 1388 | 2.27e-142 | 452 |
| MS.gene007737.t1 | MTR_7g082860 | 39.372 | 541 | 302 | 7 | 107 | 624 | 765 | 1302 | 4.92e-131 | 421 |
| MS.gene007737.t1 | MTR_7g082860 | 39.258 | 512 | 285 | 7 | 107 | 595 | 765 | 1273 | 1.76e-119 | 388 |
| MS.gene007737.t1 | MTR_7g082860 | 37.121 | 396 | 234 | 4 | 107 | 490 | 765 | 1157 | 2.69e-83 | 287 |
| MS.gene007737.t1 | MTR_2g038030 | 26.210 | 496 | 286 | 17 | 244 | 704 | 132 | 582 | 2.99e-33 | 137 |
| MS.gene007737.t1 | MTR_2g038030 | 26.453 | 499 | 281 | 19 | 244 | 704 | 132 | 582 | 4.50e-33 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007737.t1 | AT1G08130 | 67.715 | 731 | 208 | 5 | 7 | 719 | 53 | 773 | 0.0 | 1008 |
| MS.gene007737.t1 | AT1G49250 | 61.305 | 659 | 222 | 3 | 62 | 719 | 14 | 640 | 0.0 | 805 |
| MS.gene007737.t1 | AT1G66730 | 38.367 | 649 | 375 | 9 | 104 | 729 | 748 | 1394 | 1.64e-148 | 468 |
| MS.gene007737.t1 | AT5G57160 | 24.765 | 533 | 311 | 21 | 211 | 704 | 104 | 585 | 3.75e-24 | 109 |
| MS.gene007737.t1 | AT5G57160 | 28.244 | 262 | 145 | 10 | 475 | 704 | 1 | 251 | 2.51e-14 | 77.4 |
Find 157 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGATTTGTTGTACCTTAA+TGG | 0.174924 | 4.4:-45914416 | MS.gene007737:CDS |
| TCAAAAGGAGACTGAATTTC+AGG | 0.197824 | 4.4:+45916456 | None:intergenic |
| TGAAATTCTAAATAAGTTTC+AGG | 0.202495 | 4.4:-45916074 | MS.gene007737:CDS |
| ATCCGAGTTCGGTTGTTTGC+TGG | 0.220406 | 4.4:-45919274 | MS.gene007737:CDS |
| GCAGATTAAGATTCAGTATA+AGG | 0.255701 | 4.4:-45918994 | MS.gene007737:intron |
| TGGTGATGCTTCGATTATTA+AGG | 0.267756 | 4.4:-45919048 | MS.gene007737:CDS |
| ACAGAGAATCCTTCCTTTCC+AGG | 0.271926 | 4.4:-45914720 | MS.gene007737:intron |
| GGAGTAAAATCACACTTCTT+TGG | 0.283745 | 4.4:+45916145 | None:intergenic |
| TCCGTTTCTGTTTCTCTGTT+TGG | 0.297444 | 4.4:-45919234 | MS.gene007737:CDS |
| CCCACTGCAGCTCGGTAAAC+AGG | 0.304641 | 4.4:+45912024 | None:intergenic |
| ACCTCTTTCGACGAAGAATC+TGG | 0.312752 | 4.4:-45913868 | MS.gene007737:CDS |
| AGCCTGATGCTTTGACTATT+AGG | 0.315018 | 4.4:-45918343 | MS.gene007737:CDS |
| TTCTTCATGAACGGTTTCTT+CGG | 0.315297 | 4.4:+45919397 | None:intergenic |
| GGCGCATGAAGGGTTGGAAT+TGG | 0.333543 | 4.4:-45919075 | MS.gene007737:CDS |
| GAAACTGAAGAAAGATTATA+TGG | 0.336761 | 4.4:-45913332 | MS.gene007737:CDS |
| TTTCAAAGCATTTGTAAGAT+AGG | 0.347737 | 4.4:-45912941 | MS.gene007737:intron |
| GAAGAAGTGCTTGGCCATTA+AGG | 0.354488 | 4.4:+45914402 | None:intergenic |
| TATAAATGTTCACAGGAATC+TGG | 0.355908 | 4.4:-45916738 | MS.gene007737:intron |
| CACTCCTTACGTATGGTGTA+TGG | 0.357780 | 4.4:-45916174 | MS.gene007737:CDS |
| AGAGCCAGGGACCTTTGGTT+TGG | 0.369744 | 4.4:+45912755 | None:intergenic |
| TGTAGCTTTGAGTGACATAA+AGG | 0.375806 | 4.4:-45914459 | MS.gene007737:CDS |
| GAGCCAGGGACCTTTGGTTT+GGG | 0.389083 | 4.4:+45912756 | None:intergenic |
| TCACTAGATTTGGTACCTAT+TGG | 0.390041 | 4.4:-45913215 | MS.gene007737:CDS |
| TTCCAGACAAAATTGCGAAT+TGG | 0.396547 | 4.4:-45916552 | MS.gene007737:intron |
| TTACTCCTGGTGTTCCGGTT+GGG | 0.398083 | 4.4:-45916129 | MS.gene007737:CDS |
| GCCTGCTCAGGAGCTTTGTC+AGG | 0.402859 | 4.4:+45911813 | None:intergenic |
| TCTTCATGAACGGTTTCTTC+GGG | 0.403400 | 4.4:+45919398 | None:intergenic |
| TAATGGCCAAGCACTTCTTC+AGG | 0.406702 | 4.4:-45914399 | MS.gene007737:CDS |
| TCCGAGTTCGGTTGTTTGCT+GGG | 0.407250 | 4.4:-45919273 | MS.gene007737:CDS |
| GGGCATAGTAGATTCTAATA+AGG | 0.411879 | 4.4:-45912004 | MS.gene007737:intron |
| GAAGGGTTGGAATTGGGAAT+TGG | 0.414979 | 4.4:-45919068 | MS.gene007737:CDS |
| ATATATAATCCGTTTGCTAC+AGG | 0.417845 | 4.4:-45916643 | MS.gene007737:intron |
| TATAGGGGACTCACTAGATT+TGG | 0.419918 | 4.4:-45913225 | MS.gene007737:CDS |
| CCTCCAAGCGGTCACTCAAC+TGG | 0.422032 | 4.4:-45913357 | MS.gene007737:CDS |
| TCAGACGAGGAGGCCTGCTC+AGG | 0.423980 | 4.4:+45911801 | None:intergenic |
| CAGATACATTTCTTAGAGAA+TGG | 0.426116 | 4.4:-45915921 | MS.gene007737:CDS |
| TTGAGTGGCGATGGAGGAGT+AGG | 0.431353 | 4.4:+45919482 | None:intergenic |
| TTGTCGAAGGCGGAGGGTGG+TGG | 0.431407 | 4.4:+45919584 | None:intergenic |
| TCGAAGATGATGATGTGTTT+CGG | 0.438288 | 4.4:+45919360 | None:intergenic |
| TTTACTCCTGGTGTTCCGGT+TGG | 0.439220 | 4.4:-45916130 | MS.gene007737:CDS |
| TACACCGGAGGATCTTGTTC+CGG | 0.442280 | 4.4:-45919129 | MS.gene007737:CDS |
| GGCGAGTTTCGATCCGAGTT+CGG | 0.444692 | 4.4:-45919285 | MS.gene007737:CDS |
| GCGCATGAAGGGTTGGAATT+GGG | 0.446162 | 4.4:-45919074 | MS.gene007737:CDS |
| GTACCTATTGGTGCTTTCCA+TGG | 0.447882 | 4.4:-45913203 | MS.gene007737:CDS |
| GCCTGACAAAGCTCCTGAGC+AGG | 0.451547 | 4.4:-45911814 | MS.gene007737:CDS |
| ATGTTGTTGCTGCAGTTTCA+AGG | 0.451764 | 4.4:-45915845 | MS.gene007737:intron |
| ATTGGTGCTTTCCATGGTCG+TGG | 0.454967 | 4.4:-45913197 | MS.gene007737:CDS |
| TTCCCCGTCTAGTTCGAGTT+CGG | 0.467023 | 4.4:-45911836 | MS.gene007737:CDS |
| AGCTCGGTAAACAGGGCTAA+TGG | 0.467833 | 4.4:+45912032 | None:intergenic |
| CGACCATGGAAAGCACCAAT+AGG | 0.468385 | 4.4:+45913200 | None:intergenic |
| TTCCTAATAGTCAAAGCATC+AGG | 0.474419 | 4.4:+45918341 | None:intergenic |
| TTCGACGACAAATAAACAAC+CGG | 0.475389 | 4.4:+45919110 | None:intergenic |
| CCAGTTGAGTGACCGCTTGG+AGG | 0.476893 | 4.4:+45913357 | None:intergenic |
| GAAACTGCAGCAACAACATC+AGG | 0.477339 | 4.4:+45915849 | None:intergenic |
| CCCTGTTTACCGAGCTGCAG+TGG | 0.477713 | 4.4:-45912025 | MS.gene007737:CDS |
| CAACAAGAAGCGACTTTATG+TGG | 0.481176 | 4.4:+45916688 | None:intergenic |
| AATCAATCAATCCTGATGTA+TGG | 0.482280 | 4.4:-45912636 | MS.gene007737:CDS |
| TGACAGGACAAAGGTGACTT+AGG | 0.483690 | 4.4:-45918410 | MS.gene007737:intron |
| TGATGTCTTGTAGGAGTGTA+TGG | 0.485043 | 4.4:-45913004 | MS.gene007737:intron |
| TTTGACAGCATAGGCCCAAC+CGG | 0.485180 | 4.4:+45916115 | None:intergenic |
| CAGCCAGTTGAGTGACCGCT+TGG | 0.486186 | 4.4:+45913354 | None:intergenic |
| TGTACTCTGACCTAGCTTGA+AGG | 0.486426 | 4.4:+45911491 | None:intergenic |
| GGTAAACAGGGCTAATGGTC+AGG | 0.487201 | 4.4:+45912037 | None:intergenic |
| GCTCGGTGGTTCTTCATGAA+CGG | 0.487472 | 4.4:+45919388 | None:intergenic |
| GGGAATAGTCGCTGAATTGA+AGG | 0.489755 | 4.4:-45919336 | MS.gene007737:CDS |
| CAGAGAAACAGAAACGGAAC+AGG | 0.491931 | 4.4:+45919239 | None:intergenic |
| TGAGTGGCGATGGAGGAGTA+GGG | 0.493124 | 4.4:+45919483 | None:intergenic |
| CATGGTCGTGGGAAACGTAC+AGG | 0.493140 | 4.4:-45913185 | MS.gene007737:intron |
| AACATTTCATCTTATTGCAA+AGG | 0.493161 | 4.4:-45918309 | MS.gene007737:intron |
| CTGACCTAGCTTGAAGGTAA+AGG | 0.493868 | 4.4:+45911497 | None:intergenic |
| CATGAGTTTGTCGAAGGCGG+AGG | 0.496025 | 4.4:+45919577 | None:intergenic |
| AGGCCGAACTCGAACTAGAC+GGG | 0.497952 | 4.4:+45911833 | None:intergenic |
| AATTAACTTACCTCTTCAAA+AGG | 0.498329 | 4.4:+45916441 | None:intergenic |
| TCCAGATTCTTCGTCGAAAG+AGG | 0.501881 | 4.4:+45913867 | None:intergenic |
| GGAGATGATGAAGGTGGAGA+GGG | 0.501993 | 4.4:+45919521 | None:intergenic |
| CGCTTGCTGAGGCGTGTGGA+AGG | 0.510484 | 4.4:-45919025 | MS.gene007737:CDS |
| GCCTTCGACAAACTCATGTC+TGG | 0.511626 | 4.4:-45919572 | MS.gene007737:CDS |
| AGCAAACGGATTATATATAG+AGG | 0.513938 | 4.4:+45916648 | None:intergenic |
| AGTCGCTGAATTGAAGGAAA+AGG | 0.514554 | 4.4:-45919330 | MS.gene007737:CDS |
| CTCGCATCAAACCATACATC+AGG | 0.515232 | 4.4:+45912625 | None:intergenic |
| CAAACTCTCTTAGCTGCCTT+AGG | 0.516969 | 4.4:-45916519 | MS.gene007737:CDS |
| AGAATTGCGCCGGCGCATGA+AGG | 0.520567 | 4.4:-45919086 | MS.gene007737:CDS |
| CTTCAGTGTACACAGCAGCT+TGG | 0.521080 | 4.4:+45916496 | None:intergenic |
| GATTATTAAGGCGCTTGCTG+AGG | 0.522455 | 4.4:-45919036 | MS.gene007737:CDS |
| TAGAATTTCAGATACACCCT+TGG | 0.523022 | 4.4:+45916087 | None:intergenic |
| GCAGGCCTCCTCGTCTGAGC+AGG | 0.524759 | 4.4:-45911796 | MS.gene007737:intron |
| GATGTGTTTCGGATCTTGCT+CGG | 0.526616 | 4.4:+45919371 | None:intergenic |
| AATTCCAACCCTTCATGCGC+CGG | 0.528853 | 4.4:+45919077 | None:intergenic |
| GCCAAACAGAGAAACAGAAA+CGG | 0.531840 | 4.4:+45919233 | None:intergenic |
| ATGCAACAAGTTCACAATCA+AGG | 0.533772 | 4.4:+45914756 | None:intergenic |
| CCGCTTGGAGGGTTCATATG+TGG | 0.534655 | 4.4:+45913369 | None:intergenic |
| TCCGCAGCTGAAGAAGAAAC+CGG | 0.534838 | 4.4:-45919306 | MS.gene007737:CDS |
| GGCAGCTAAGAGAGTTTGCT+CGG | 0.535405 | 4.4:+45916524 | None:intergenic |
| TTTCAGACATACTATAAATG+TGG | 0.536516 | 4.4:-45912661 | MS.gene007737:intron |
| ACTCCTTACGTATGGTGTAT+GGG | 0.537597 | 4.4:-45916173 | MS.gene007737:CDS |
| AGAAATGCTGAACGGAACAC+TGG | 0.537995 | 4.4:-45915879 | MS.gene007737:CDS |
| TGCGCCGGCGCATGAAGGGT+TGG | 0.538670 | 4.4:-45919081 | MS.gene007737:CDS |
| TCCCAGCAAACAACCGAACT+CGG | 0.542601 | 4.4:+45919272 | None:intergenic |
| TAAAAGGTGTTACCTCTCTA+CGG | 0.544535 | 4.4:+45914363 | None:intergenic |
| TTCTTTCGTTTAGGTGTGGG+AGG | 0.544797 | 4.4:-45912073 | MS.gene007737:intron |
| ATACGATGGAGAGCGTGCTC+AGG | 0.551459 | 4.4:-45916026 | MS.gene007737:intron |
| AACAACATCAAATGATGTTG+AGG | 0.552524 | 4.4:-45913824 | MS.gene007737:CDS |
| CAGTTGAGTGACCGCTTGGA+GGG | 0.554490 | 4.4:+45913358 | None:intergenic |
| GAATTGCAACCTGTAGCAAA+CGG | 0.557122 | 4.4:+45916634 | None:intergenic |
| GGGAGATGATGAAGGTGGAG+AGG | 0.557440 | 4.4:+45919520 | None:intergenic |
| ATAGGCCCAACCGGAACACC+AGG | 0.558999 | 4.4:+45916124 | None:intergenic |
| GAGTGGCGATGGAGGAGTAG+GGG | 0.559751 | 4.4:+45919484 | None:intergenic |
| GTACACAGCAGCTTGGCCTA+AGG | 0.560199 | 4.4:+45916503 | None:intergenic |
| ATGAGATTACCTGGAAAGGA+AGG | 0.560383 | 4.4:+45914711 | None:intergenic |
| GCCGGTTTCTTCTTCAGCTG+CGG | 0.560705 | 4.4:+45919305 | None:intergenic |
| GGAGACTGAATTTCAGGAGG+CGG | 0.562772 | 4.4:+45916462 | None:intergenic |
| AAATCCTTTACCTTCAAGCT+AGG | 0.563170 | 4.4:-45911501 | MS.gene007737:CDS |
| TGATGCTTTGACTATTAGGA+AGG | 0.564438 | 4.4:-45918339 | MS.gene007737:CDS |
| TTGGTGCTTTCCATGGTCGT+GGG | 0.568717 | 4.4:-45913196 | MS.gene007737:CDS |
| AAACACATCATCATCTTCGA+AGG | 0.569439 | 4.4:-45919357 | MS.gene007737:CDS |
| CCTGTTTACCGAGCTGCAGT+GGG | 0.571614 | 4.4:-45912024 | MS.gene007737:CDS |
| TGCCAAATACCTAATCATGT+TGG | 0.571918 | 4.4:+45911457 | None:intergenic |
| TTGACAAAGCCATTGATGCA+AGG | 0.578584 | 4.4:-45913786 | MS.gene007737:intron |
| GGCAATGAGATTACCTGGAA+AGG | 0.580861 | 4.4:+45914707 | None:intergenic |
| TGGGAATCACTTTAGAGCGA+AGG | 0.581370 | 4.4:+45912775 | None:intergenic |
| ACAACCGGAACAAGATCCTC+CGG | 0.582042 | 4.4:+45919125 | None:intergenic |
| GTCGTCGAATAGAATTGCGC+CGG | 0.586883 | 4.4:-45919096 | MS.gene007737:CDS |
| GGCTCTACTTTGCAGTATAG+GGG | 0.588353 | 4.4:-45913240 | MS.gene007737:intron |
| GTGTCTGCACTCCTTACGTA+TGG | 0.590991 | 4.4:-45916181 | MS.gene007737:CDS |
| GAAATGCTGAACGGAACACT+GGG | 0.591346 | 4.4:-45915878 | MS.gene007737:CDS |
| GAATTGCGCCGGCGCATGAA+GGG | 0.595193 | 4.4:-45919085 | MS.gene007737:CDS |
| CAGGCCGAACTCGAACTAGA+CGG | 0.602214 | 4.4:+45911832 | None:intergenic |
| CCACTGCAGCTCGGTAAACA+GGG | 0.610534 | 4.4:+45912025 | None:intergenic |
| AACTGTGATACATGCTACAC+CGG | 0.611772 | 4.4:-45919144 | MS.gene007737:CDS |
| ATGAGTTTGTCGAAGGCGGA+GGG | 0.613187 | 4.4:+45919578 | None:intergenic |
| CTGTACGTTTCCCACGACCA+TGG | 0.615287 | 4.4:+45913186 | None:intergenic |
| AAGGCGCTTGCTGAGGCGTG+TGG | 0.616663 | 4.4:-45919029 | MS.gene007737:CDS |
| AGTTTGTCGAAGGCGGAGGG+TGG | 0.619661 | 4.4:+45919581 | None:intergenic |
| TATGCTGTCAAAAGCAACCA+AGG | 0.619881 | 4.4:-45916104 | MS.gene007737:CDS |
| AGACATGAGTTTGTCGAAGG+CGG | 0.622901 | 4.4:+45919574 | None:intergenic |
| TATCGTTGTCATAGCACGCA+AGG | 0.623901 | 4.4:+45912972 | None:intergenic |
| GTTCCCATACACCATACGTA+AGG | 0.625733 | 4.4:+45916170 | None:intergenic |
| CTACTATGCCCACTGCAGCT+CGG | 0.628696 | 4.4:+45912016 | None:intergenic |
| AACACATCATCATCTTCGAA+GGG | 0.629193 | 4.4:-45919356 | MS.gene007737:CDS |
| GATATGATTAACGAAGAGAG+TGG | 0.632135 | 4.4:-45919206 | MS.gene007737:CDS |
| TAAAGTGATTCCCAAACCAA+AGG | 0.638299 | 4.4:-45912766 | MS.gene007737:intron |
| AAACTTGAAAATCCGTAGAG+AGG | 0.640219 | 4.4:-45914375 | MS.gene007737:intron |
| GCCAGACATGAGTTTGTCGA+AGG | 0.643145 | 4.4:+45919571 | None:intergenic |
| AAAGGAGACTGAATTTCAGG+AGG | 0.653188 | 4.4:+45916459 | None:intergenic |
| GTACTTTACCTGCTCAGACG+AGG | 0.665242 | 4.4:+45911788 | None:intergenic |
| GCATCATAGACTGAGAAGAA+CGG | 0.671258 | 4.4:+45918369 | None:intergenic |
| ATGCTGTCAAAAGCAACCAA+GGG | 0.671976 | 4.4:-45916103 | MS.gene007737:CDS |
| GGCCGAACTCGAACTAGACG+GGG | 0.685841 | 4.4:+45911834 | None:intergenic |
| GAACTCGGATCGAAACTCGC+CGG | 0.689493 | 4.4:+45919287 | None:intergenic |
| GTGTTTCGGATCTTGCTCGG+TGG | 0.690872 | 4.4:+45919374 | None:intergenic |
| TGTGATACATGCTACACCGG+AGG | 0.695818 | 4.4:-45919141 | MS.gene007737:CDS |
| ACGTGTGAATACAAATACGA+TGG | 0.698464 | 4.4:-45916040 | MS.gene007737:CDS |
| GTTCTTCTCAGTCTATGATG+CGG | 0.698544 | 4.4:-45918367 | MS.gene007737:CDS |
| CCACATATGAACCCTCCAAG+CGG | 0.704525 | 4.4:-45913369 | MS.gene007737:CDS |
| CTTTACCTGCTCAGACGAGG+AGG | 0.708129 | 4.4:+45911791 | None:intergenic |
| TGTATGGTTTGATGCGAGTG+AGG | 0.711100 | 4.4:-45912620 | MS.gene007737:intron |
| TTTACAGTAGAAATGCTGAA+CGG | 0.714187 | 4.4:-45915887 | MS.gene007737:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 45911471 | 45919618 | 45911471 | ID=MS.gene007737 |
| chr4.4 | mRNA | 45911471 | 45919618 | 45911471 | ID=MS.gene007737.t1;Parent=MS.gene007737 |
| chr4.4 | exon | 45918995 | 45919618 | 45918995 | ID=MS.gene007737.t1.exon1;Parent=MS.gene007737.t1 |
| chr4.4 | CDS | 45918995 | 45919618 | 45918995 | ID=cds.MS.gene007737.t1;Parent=MS.gene007737.t1 |
| chr4.4 | exon | 45918310 | 45918426 | 45918310 | ID=MS.gene007737.t1.exon2;Parent=MS.gene007737.t1 |
| chr4.4 | CDS | 45918310 | 45918426 | 45918310 | ID=cds.MS.gene007737.t1;Parent=MS.gene007737.t1 |
| chr4.4 | exon | 45916644 | 45916745 | 45916644 | ID=MS.gene007737.t1.exon3;Parent=MS.gene007737.t1 |
| chr4.4 | CDS | 45916644 | 45916745 | 45916644 | ID=cds.MS.gene007737.t1;Parent=MS.gene007737.t1 |
| chr4.4 | exon | 45916452 | 45916568 | 45916452 | ID=MS.gene007737.t1.exon4;Parent=MS.gene007737.t1 |
| chr4.4 | CDS | 45916452 | 45916568 | 45916452 | ID=cds.MS.gene007737.t1;Parent=MS.gene007737.t1 |
| chr4.4 | exon | 45916027 | 45916257 | 45916027 | ID=MS.gene007737.t1.exon5;Parent=MS.gene007737.t1 |
| chr4.4 | CDS | 45916027 | 45916257 | 45916027 | ID=cds.MS.gene007737.t1;Parent=MS.gene007737.t1 |
| chr4.4 | exon | 45915846 | 45915940 | 45915846 | ID=MS.gene007737.t1.exon6;Parent=MS.gene007737.t1 |
| chr4.4 | CDS | 45915846 | 45915940 | 45915846 | ID=cds.MS.gene007737.t1;Parent=MS.gene007737.t1 |
| chr4.4 | exon | 45914721 | 45914808 | 45914721 | ID=MS.gene007737.t1.exon7;Parent=MS.gene007737.t1 |
| chr4.4 | CDS | 45914721 | 45914808 | 45914721 | ID=cds.MS.gene007737.t1;Parent=MS.gene007737.t1 |
| chr4.4 | exon | 45914376 | 45914507 | 45914376 | ID=MS.gene007737.t1.exon8;Parent=MS.gene007737.t1 |
| chr4.4 | CDS | 45914376 | 45914507 | 45914376 | ID=cds.MS.gene007737.t1;Parent=MS.gene007737.t1 |
| chr4.4 | exon | 45913787 | 45913899 | 45913787 | ID=MS.gene007737.t1.exon9;Parent=MS.gene007737.t1 |
| chr4.4 | CDS | 45913787 | 45913899 | 45913787 | ID=cds.MS.gene007737.t1;Parent=MS.gene007737.t1 |
| chr4.4 | exon | 45913328 | 45913429 | 45913328 | ID=MS.gene007737.t1.exon10;Parent=MS.gene007737.t1 |
| chr4.4 | CDS | 45913328 | 45913429 | 45913328 | ID=cds.MS.gene007737.t1;Parent=MS.gene007737.t1 |
| chr4.4 | exon | 45913186 | 45913247 | 45913186 | ID=MS.gene007737.t1.exon11;Parent=MS.gene007737.t1 |
| chr4.4 | CDS | 45913186 | 45913247 | 45913186 | ID=cds.MS.gene007737.t1;Parent=MS.gene007737.t1 |
| chr4.4 | exon | 45912942 | 45913013 | 45912942 | ID=MS.gene007737.t1.exon12;Parent=MS.gene007737.t1 |
| chr4.4 | CDS | 45912942 | 45913013 | 45912942 | ID=cds.MS.gene007737.t1;Parent=MS.gene007737.t1 |
| chr4.4 | exon | 45912767 | 45912840 | 45912767 | ID=MS.gene007737.t1.exon13;Parent=MS.gene007737.t1 |
| chr4.4 | CDS | 45912767 | 45912840 | 45912767 | ID=cds.MS.gene007737.t1;Parent=MS.gene007737.t1 |
| chr4.4 | exon | 45912621 | 45912677 | 45912621 | ID=MS.gene007737.t1.exon14;Parent=MS.gene007737.t1 |
| chr4.4 | CDS | 45912621 | 45912677 | 45912621 | ID=cds.MS.gene007737.t1;Parent=MS.gene007737.t1 |
| chr4.4 | exon | 45912005 | 45912082 | 45912005 | ID=MS.gene007737.t1.exon15;Parent=MS.gene007737.t1 |
| chr4.4 | CDS | 45912005 | 45912082 | 45912005 | ID=cds.MS.gene007737.t1;Parent=MS.gene007737.t1 |
| chr4.4 | exon | 45911797 | 45911874 | 45911797 | ID=MS.gene007737.t1.exon16;Parent=MS.gene007737.t1 |
| chr4.4 | CDS | 45911797 | 45911874 | 45911797 | ID=cds.MS.gene007737.t1;Parent=MS.gene007737.t1 |
| chr4.4 | exon | 45911471 | 45911527 | 45911471 | ID=MS.gene007737.t1.exon17;Parent=MS.gene007737.t1 |
| chr4.4 | CDS | 45911471 | 45911527 | 45911471 | ID=cds.MS.gene007737.t1;Parent=MS.gene007737.t1 |
| Gene Sequence |
| Protein sequence |
