AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90358

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90358.t1 MTR_1g083130 98.077 572 11 0 1 572 1 572 0.0 1148
MS.gene90358.t1 MTR_3g049990 32.439 410 230 8 26 433 152 516 6.93e-53 192
MS.gene90358.t1 MTR_7g056830 31.905 420 231 10 18 433 2 370 7.30e-52 184
MS.gene90358.t1 MTR_6g082080 31.667 420 232 10 18 433 2 370 4.38e-51 182
MS.gene90358.t1 MTR_2g041140 30.480 479 275 12 26 492 141 573 2.34e-50 185
MS.gene90358.t1 MTR_7g109720 29.880 415 246 7 25 437 231 602 1.47e-49 183
MS.gene90358.t1 MTR_3g449250 28.211 436 257 8 22 456 86 466 2.38e-42 160
MS.gene90358.t1 MTR_3g449250 28.211 436 257 8 22 456 86 466 5.94e-42 159
MS.gene90358.t1 MTR_6g005550 29.238 407 212 11 26 416 165 511 2.06e-41 159
MS.gene90358.t1 MTR_2g066050 28.571 413 239 8 26 432 53 415 1.28e-40 154
MS.gene90358.t1 MTR_2g032630 29.323 399 234 9 26 422 496 848 1.81e-40 158
MS.gene90358.t1 MTR_4g134170 28.271 428 242 8 25 432 286 668 3.03e-40 156
MS.gene90358.t1 MTR_3g467550 27.358 424 251 6 26 438 117 494 4.73e-40 154
MS.gene90358.t1 MTR_5g090120 27.506 429 247 9 15 433 70 444 5.15e-40 154
MS.gene90358.t1 MTR_2g007000 27.960 397 245 5 25 421 503 858 4.25e-39 154
MS.gene90358.t1 MTR_3g467550 28.040 403 233 6 47 438 107 463 5.21e-39 150
MS.gene90358.t1 MTR_2g438110 25.336 446 271 9 6 448 14 400 1.08e-38 147
MS.gene90358.t1 MTR_4g114120 28.125 416 233 9 27 422 141 510 7.27e-38 149
MS.gene90358.t1 MTR_6g005320 28.037 428 241 10 25 432 248 628 9.97e-38 148
MS.gene90358.t1 MTR_8g027770 27.739 429 261 8 4 421 176 566 1.83e-37 147
MS.gene90358.t1 MTR_7g057250 25.758 528 275 18 18 477 153 631 2.36e-37 148
MS.gene90358.t1 MTR_7g076820 28.293 410 242 7 13 421 136 494 2.76e-37 145
MS.gene90358.t1 MTR_7g076830 27.805 410 244 7 13 421 129 487 1.01e-36 143
MS.gene90358.t1 MTR_7g076800 27.805 410 244 7 13 421 127 485 1.12e-36 143
MS.gene90358.t1 MTR_2g100230 26.768 396 243 5 25 418 95 445 1.19e-36 143
MS.gene90358.t1 MTR_2g039960 27.139 409 243 7 26 431 41 397 3.10e-36 140
MS.gene90358.t1 MTR_8g018400 26.406 409 246 7 26 431 41 397 1.02e-35 139
MS.gene90358.t1 MTR_1g095810 26.619 417 235 12 25 424 144 506 1.55e-35 141
MS.gene90358.t1 MTR_4g125970 26.895 409 244 7 26 431 41 397 1.19e-34 135
MS.gene90358.t1 MTR_1g026830 26.253 419 234 11 25 424 146 508 4.30e-34 137
MS.gene90358.t1 MTR_2g099620 26.406 409 246 7 26 431 41 397 4.43e-34 134
MS.gene90358.t1 MTR_4g105100 27.387 398 240 6 25 419 201 552 4.70e-34 137
MS.gene90358.t1 MTR_4g125970 26.895 409 244 7 26 431 58 414 5.23e-34 134
MS.gene90358.t1 MTR_2g099620 26.747 415 247 8 20 431 21 381 5.77e-34 133
MS.gene90358.t1 MTR_4g059460 27.800 500 269 19 26 468 44 508 9.06e-34 136
MS.gene90358.t1 MTR_3g083690 27.384 409 233 11 26 416 145 507 1.15e-33 135
MS.gene90358.t1 MTR_1g054630 28.066 424 241 10 11 418 142 517 1.67e-33 135
MS.gene90358.t1 MTR_6g039840 27.635 427 250 10 26 437 110 492 2.56e-33 135
MS.gene90358.t1 MTR_8g027775 27.094 406 250 7 24 421 100 467 2.92e-33 134
MS.gene90358.t1 MTR_7g100820 30.184 434 238 13 25 448 129 507 3.49e-33 134
MS.gene90358.t1 MTR_2g043360 27.651 481 256 19 26 449 41 486 6.61e-33 133
MS.gene90358.t1 MTR_4g079320 26.817 399 243 10 26 422 19 370 1.91e-32 133
MS.gene90358.t1 MTR_4g068990 26.540 422 241 12 27 430 69 439 2.36e-32 132
MS.gene90358.t1 MTR_5g027840 27.423 423 251 10 2 413 75 452 1.56e-31 129
MS.gene90358.t1 MTR_5g092560 26.108 406 248 9 31 430 81 440 2.31e-31 129
MS.gene90358.t1 MTR_8g027780 26.355 406 253 7 24 421 104 471 6.23e-31 127
MS.gene90358.t1 MTR_8g097000 26.988 415 253 10 27 431 289 663 6.74e-31 128
MS.gene90358.t1 MTR_2g055850 26.329 395 224 10 26 407 91 431 9.24e-30 124
MS.gene90358.t1 MTR_5g069330 27.896 423 236 15 22 433 3 367 6.10e-29 119
MS.gene90358.t1 MTR_6g033070 25.854 410 249 12 26 428 140 501 1.50e-28 120
MS.gene90358.t1 MTR_5g069330 27.857 420 234 15 25 433 2 363 2.38e-28 117
MS.gene90358.t1 MTR_6g056080 27.083 384 228 9 40 416 117 455 6.28e-28 119
MS.gene90358.t1 MTR_2g063080 25.280 447 246 8 25 422 108 515 9.59e-28 117
MS.gene90358.t1 MTR_3g467550 26.190 378 222 6 26 392 117 448 1.24e-27 116
MS.gene90358.t1 MTR_3g118120 25.791 411 232 13 25 407 131 496 1.61e-26 114
MS.gene90358.t1 MTR_1g102410 25.986 431 233 13 18 416 36 412 4.98e-26 113
MS.gene90358.t1 MTR_3g107420 25.057 439 257 12 4 430 28 406 1.29e-25 110
MS.gene90358.t1 MTR_1g012420 24.263 441 262 12 2 430 26 406 4.92e-25 108
MS.gene90358.t1 MTR_8g027780 27.385 325 223 6 24 340 104 423 9.36e-25 107
MS.gene90358.t1 MTR_4g112340 22.703 370 246 5 38 407 109 438 9.42e-25 108
MS.gene90358.t1 MTR_4g010565 25.185 405 235 10 26 419 124 471 2.25e-24 107
MS.gene90358.t1 MTR_3g071620 25.298 419 240 9 36 429 26 396 5.67e-24 106
MS.gene90358.t1 MTR_0915s0010 28.428 299 196 5 39 337 2 282 9.60e-24 101
MS.gene90358.t1 MTR_4g105100 27.273 319 216 5 25 340 201 506 9.24e-23 102
MS.gene90358.t1 MTR_4g077370 34.951 206 124 4 22 226 246 442 1.26e-22 101
MS.gene90358.t1 MTR_4g077370 33.333 207 108 6 26 230 2 180 5.36e-17 84.0
MS.gene90358.t1 MTR_1g061970 25.176 425 230 16 26 417 80 449 2.63e-22 100
MS.gene90358.t1 MTR_8g079462 28.311 219 116 4 213 428 87 267 1.10e-20 93.6
MS.gene90358.t1 MTR_4g049910 24.574 411 234 11 26 417 55 408 2.97e-20 94.0
MS.gene90358.t1 MTR_8g032230 35.099 151 92 2 18 168 2 146 5.40e-18 82.0
MS.gene90358.t1 MTR_5g092560 26.154 260 146 6 177 430 10 229 6.36e-18 87.4
MS.gene90358.t1 MTR_8g062720 30.319 188 116 4 22 199 87 269 1.16e-17 87.0
MS.gene90358.t1 MTR_4g459350 32.418 182 111 6 26 202 41 215 1.15e-16 80.9
MS.gene90358.t1 MTR_1g046570 22.010 418 246 11 47 431 12 382 9.72e-16 79.7
MS.gene90358.t1 MTR_4g131750 23.077 416 244 12 48 432 104 474 3.01e-15 79.0
MS.gene90358.t1 MTR_8g042690 22.414 406 233 12 38 422 30 374 2.39e-11 66.6
MS.gene90358.t1 MTR_3g107420 26.695 236 145 8 4 230 28 244 6.61e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90358.t1 AT4G34910 68.659 552 162 4 25 566 46 596 0.0 717
MS.gene90358.t1 AT5G60990 29.684 475 272 11 18 484 2 422 1.38e-50 181
MS.gene90358.t1 AT4G16630 32.195 410 231 8 26 433 168 532 1.62e-50 186
MS.gene90358.t1 AT2G47330 29.736 417 244 9 25 437 228 599 2.00e-45 171
MS.gene90358.t1 AT5G26742 29.245 424 248 8 16 433 93 470 1.90e-43 166
MS.gene90358.t1 AT5G26742 29.245 424 248 8 16 433 93 470 1.92e-43 166
MS.gene90358.t1 AT2G33730 28.037 428 243 8 25 432 313 695 2.83e-42 162
MS.gene90358.t1 AT3G01540 29.114 395 228 9 26 416 159 505 2.88e-41 158
MS.gene90358.t1 AT3G01540 29.114 395 228 9 26 416 159 505 2.88e-41 158
MS.gene90358.t1 AT3G01540 29.114 395 228 9 26 416 159 505 2.88e-41 158
MS.gene90358.t1 AT3G01540 29.114 395 228 9 26 416 159 505 3.46e-41 158
MS.gene90358.t1 AT3G22310 27.725 422 241 10 26 437 117 484 5.58e-41 157
MS.gene90358.t1 AT3G22310 27.725 422 241 10 26 437 117 484 6.57e-41 157
MS.gene90358.t1 AT3G22330 27.209 430 248 10 3 421 81 456 7.48e-41 157
MS.gene90358.t1 AT2G40700 28.571 504 267 18 9 449 5 478 3.59e-40 155
MS.gene90358.t1 AT3G09720 30.392 408 219 11 25 422 137 489 4.49e-40 153
MS.gene90358.t1 AT3G09720 30.392 408 219 11 25 422 137 489 4.49e-40 153
MS.gene90358.t1 AT5G14610 28.928 401 221 9 26 416 162 508 1.78e-39 153
MS.gene90358.t1 AT5G14610 28.928 401 221 9 26 416 162 508 1.89e-39 153
MS.gene90358.t1 AT5G26742 29.306 389 222 9 51 433 36 377 1.97e-39 153
MS.gene90358.t1 AT5G14610 28.928 401 221 9 26 416 170 516 2.12e-39 153
MS.gene90358.t1 AT1G16280 28.467 411 244 8 26 433 59 422 2.34e-39 150
MS.gene90358.t1 AT4G00660 27.913 412 241 8 13 421 118 476 3.58e-39 150
MS.gene90358.t1 AT4G00660 27.913 412 241 8 13 421 118 476 3.58e-39 150
MS.gene90358.t1 AT1G20920 26.835 395 248 5 27 421 531 884 9.64e-39 152
MS.gene90358.t1 AT1G20920 26.835 395 248 5 27 421 531 884 9.64e-39 152
MS.gene90358.t1 AT1G20920 26.835 395 248 5 27 421 531 884 9.64e-39 152
MS.gene90358.t1 AT1G20920 26.835 395 248 5 27 421 531 884 9.64e-39 152
MS.gene90358.t1 AT1G20920 26.835 395 248 5 27 421 531 884 9.64e-39 152
MS.gene90358.t1 AT1G20920 26.835 395 248 5 27 421 531 884 9.64e-39 152
MS.gene90358.t1 AT3G06480 29.750 400 231 10 26 422 436 788 1.15e-38 152
MS.gene90358.t1 AT1G20920 26.835 395 248 5 27 421 193 546 2.84e-38 150
MS.gene90358.t1 AT2G45810 28.608 395 231 6 27 421 156 499 4.43e-38 147
MS.gene90358.t1 AT1G55150 26.884 398 240 6 25 418 99 449 1.88e-37 145
MS.gene90358.t1 AT1G55150 26.884 398 240 6 25 418 124 474 1.03e-36 144
MS.gene90358.t1 AT2G42520 27.941 408 235 11 26 418 160 523 1.25e-36 145
MS.gene90358.t1 AT2G42520 27.941 408 235 11 26 418 160 523 1.25e-36 145
MS.gene90358.t1 AT2G42520 27.941 408 235 11 26 418 160 523 1.25e-36 145
MS.gene90358.t1 AT3G61240 27.595 395 235 6 27 421 126 469 1.27e-36 143
MS.gene90358.t1 AT3G61240 27.595 395 235 6 27 421 126 469 1.27e-36 143
MS.gene90358.t1 AT3G13920 27.361 413 245 7 22 431 36 396 2.37e-36 140
MS.gene90358.t1 AT1G54270 27.628 409 241 7 26 431 40 396 3.84e-36 140
MS.gene90358.t1 AT3G13920 27.361 413 245 7 22 431 26 386 4.07e-36 139
MS.gene90358.t1 AT3G09620 27.068 399 213 9 27 421 398 722 6.07e-36 144
MS.gene90358.t1 AT3G09620 27.068 399 213 9 27 421 399 723 6.07e-36 144
MS.gene90358.t1 AT5G14610 28.609 381 208 9 48 418 53 379 7.06e-36 141
MS.gene90358.t1 AT5G14610 28.609 381 208 9 48 418 53 379 7.06e-36 141
MS.gene90358.t1 AT3G13920 27.792 403 236 7 22 421 36 386 1.10e-35 139
MS.gene90358.t1 AT3G13920 27.792 403 236 7 22 421 40 390 1.19e-35 139
MS.gene90358.t1 AT5G14610 28.040 403 221 10 31 418 230 578 2.09e-35 142
MS.gene90358.t1 AT1G31970 29.365 378 217 8 43 413 132 466 2.29e-35 140
MS.gene90358.t1 AT5G63120 26.551 403 235 6 27 420 167 517 5.50e-35 139
MS.gene90358.t1 AT5G51280 27.184 412 239 12 25 424 146 508 6.46e-35 139
MS.gene90358.t1 AT3G19760 24.350 423 264 7 26 448 36 402 8.10e-35 136
MS.gene90358.t1 AT5G65900 27.612 402 237 9 24 419 153 506 8.61e-35 139
MS.gene90358.t1 AT3G13920 27.361 413 240 8 22 431 36 391 1.01e-34 136
MS.gene90358.t1 AT1G54270 27.628 409 236 8 26 431 40 391 1.25e-34 135
MS.gene90358.t1 AT5G08610 26.807 429 268 11 2 421 357 748 1.47e-34 139
MS.gene90358.t1 AT1G72730 26.406 409 246 8 26 431 42 398 3.29e-34 134
MS.gene90358.t1 AT4G33370 27.913 412 230 13 25 421 97 456 2.44e-33 134
MS.gene90358.t1 AT5G08620 26.420 405 248 9 27 421 82 446 7.11e-33 133
MS.gene90358.t1 AT3G58570 26.225 408 242 10 26 418 147 510 1.28e-32 133
MS.gene90358.t1 AT3G58510 26.022 465 260 14 26 476 152 546 3.99e-32 131
MS.gene90358.t1 AT3G58510 26.022 465 260 14 26 476 152 546 3.99e-32 131
MS.gene90358.t1 AT3G58510 26.022 465 260 14 26 476 152 546 3.99e-32 131
MS.gene90358.t1 AT3G16840 24.295 461 251 10 26 425 192 615 1.09e-31 131
MS.gene90358.t1 AT3G16840 24.295 461 251 10 26 425 191 614 1.14e-31 130
MS.gene90358.t1 AT1G77030 27.518 407 228 11 27 422 30 380 1.56e-31 130
MS.gene90358.t1 AT1G51380 24.697 413 254 10 25 433 22 381 4.69e-31 125
MS.gene90358.t1 AT4G09730 28.329 413 236 11 26 422 113 481 5.40e-31 128
MS.gene90358.t1 AT3G18600 26.425 386 233 9 26 407 90 428 2.03e-30 125
MS.gene90358.t1 AT5G63630 25.057 439 255 9 1 421 232 614 6.40e-30 125
MS.gene90358.t1 AT1G12770 26.316 456 229 11 25 422 110 516 1.08e-29 123
MS.gene90358.t1 AT1G12770 26.316 456 229 11 25 422 110 516 1.08e-29 123
MS.gene90358.t1 AT5G63630 24.886 438 257 7 1 421 38 420 1.32e-29 123
MS.gene90358.t1 AT3G02065 25.428 409 253 9 26 428 111 473 2.45e-29 122
MS.gene90358.t1 AT3G02065 25.428 409 253 9 26 428 111 473 2.45e-29 122
MS.gene90358.t1 AT5G14610 29.538 325 198 8 26 340 170 473 2.54e-29 122
MS.gene90358.t1 AT5G54910 24.578 415 252 11 25 429 71 434 5.90e-29 122
MS.gene90358.t1 AT1G28180 26.933 375 223 6 55 425 3 330 1.43e-28 117
MS.gene90358.t1 AT1G63250 24.880 418 259 7 25 429 328 703 5.16e-28 119
MS.gene90358.t1 AT2G07750 25.120 418 258 7 25 429 375 750 1.01e-27 119
MS.gene90358.t1 AT5G62190 26.988 415 229 11 20 416 91 449 1.38e-27 118
MS.gene90358.t1 AT3G06480 30.818 318 203 9 26 340 436 739 1.54e-27 118
MS.gene90358.t1 AT3G06980 25.917 409 233 13 25 407 374 738 2.67e-26 114
MS.gene90358.t1 AT3G53110 25.167 449 264 16 27 453 93 491 2.35e-25 110
MS.gene90358.t1 AT3G02065 24.737 380 234 9 55 428 3 336 4.22e-25 107
MS.gene90358.t1 AT5G63120 27.245 323 207 5 27 340 167 470 7.79e-25 108
MS.gene90358.t1 AT5G11170 24.444 405 238 11 26 419 47 394 8.13e-25 107
MS.gene90358.t1 AT5G11200 24.444 405 238 11 26 419 47 394 8.13e-25 107
MS.gene90358.t1 AT5G63120 27.245 323 207 5 27 340 167 470 8.57e-25 108
MS.gene90358.t1 AT5G63120 27.245 323 207 5 27 340 167 470 8.57e-25 108
MS.gene90358.t1 AT5G63120 27.245 323 207 5 27 340 167 470 8.57e-25 108
MS.gene90358.t1 AT5G05450 25.000 416 250 9 32 429 23 394 2.31e-24 107
MS.gene90358.t1 AT1G71370 24.146 410 264 8 27 429 16 385 8.78e-22 99.8
MS.gene90358.t1 AT5G11200 23.288 438 243 11 26 419 47 435 1.74e-21 98.2
MS.gene90358.t1 AT5G11200 24.368 435 260 18 26 419 47 453 1.44e-19 92.4
MS.gene90358.t1 AT1G51380 25.940 266 179 7 25 289 22 270 3.48e-19 88.6
MS.gene90358.t1 AT1G71280 31.308 214 131 5 27 236 17 218 1.87e-16 82.8
MS.gene90358.t1 AT1G51380 27.523 218 146 6 25 241 22 228 2.00e-16 80.9
MS.gene90358.t1 AT1G51380 27.523 218 146 6 25 241 22 228 2.79e-16 80.5
MS.gene90358.t1 AT1G71280 31.163 215 130 6 27 236 17 218 4.58e-16 80.1
MS.gene90358.t1 AT5G19210 23.969 388 214 13 48 406 99 434 2.88e-15 79.0
MS.gene90358.t1 AT1G59990 30.481 187 116 2 22 199 77 258 4.01e-15 79.0
MS.gene90358.t1 AT1G59990 30.481 187 116 2 22 199 77 258 5.56e-15 78.6

Find 127 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTGATGGCCATCTCTGC+TGG 0.215369 1.3:-58706519 MS.gene90358:CDS
AAGAAGACACTGGCAACTTC+TGG 0.263713 1.3:+58710684 None:intergenic
TGAATATCAGAACTTTCTTT+TGG 0.268968 1.3:+58709769 None:intergenic
TTTCAGATTGAAACTATTCT+TGG 0.271547 1.3:-58709727 MS.gene90358:CDS
AGTTTCAAGAGAACCATTAA+TGG 0.277015 1.3:+58711455 None:intergenic
CTTCAGGCAGCATCCATTAA+TGG 0.291130 1.3:-58711468 MS.gene90358:CDS
TGTGGTTTCGTTCGCGTTTA+CGG 0.312496 1.3:+58712681 None:intergenic
CTAAAATTAGATTCTGAATT+CGG 0.328738 1.3:-58708477 MS.gene90358:CDS
AGTTTCTTCCTATCAACATT+AGG 0.332535 1.3:+58712430 None:intergenic
CAGTTGAATCTTTACGGTAT+AGG 0.338628 1.3:-58707852 MS.gene90358:CDS
TCCTTACGGTTTCCCACTTC+AGG 0.340083 1.3:+58710166 None:intergenic
GCTCGTGCGAAAACCGGTTC+TGG 0.341119 1.3:-58712499 MS.gene90358:CDS
AATTACATACCTCAAGAATA+TGG 0.342339 1.3:+58709034 None:intergenic
GGAATCGCAACGTGCTGAAT+TGG 0.348704 1.3:+58712550 None:intergenic
TGCAGCAAGCAGCACTGGTT+GGG 0.349074 1.3:-58711551 MS.gene90358:intron
ATTATTTCCCATTGCATCTC+TGG 0.349578 1.3:+58706587 None:intergenic
AAATTTCATTCCTCAAATCC+TGG 0.357679 1.3:+58706994 None:intergenic
CTCTGATGGCCATCTCTGCT+GGG 0.362231 1.3:-58706518 MS.gene90358:CDS
TCGCAATTAGATAATCAAAT+AGG 0.362937 1.3:+58708583 None:intergenic
AACTGCACTCTTGGTGAGTA+AGG 0.367677 1.3:+58707870 None:intergenic
GCAGATCTTCTATTATCATA+TGG 0.372693 1.3:-58710745 MS.gene90358:CDS
TTTGTCTAACTCAGTACTTC+AGG 0.376348 1.3:-58711484 MS.gene90358:CDS
CTTCATCCTTCTCCGTTGAC+TGG 0.388679 1.3:+58708550 None:intergenic
AGTTGAATCTTTACGGTATA+GGG 0.391457 1.3:-58707851 MS.gene90358:CDS
TGTTTACTCCTAATGTTGAT+AGG 0.404703 1.3:-58712438 MS.gene90358:CDS
AGAGTGCAGTTGAATCTTTA+CGG 0.420853 1.3:-58707858 MS.gene90358:CDS
GCGATTCCATTGATTCTTGA+AGG 0.422533 1.3:-58712535 MS.gene90358:CDS
AATCCTGGGCTCGTGATTCT+CGG 0.424953 1.3:+58707009 None:intergenic
ACAGGATACGTACATCGAAT+TGG 0.425312 1.3:-58708205 MS.gene90358:CDS
CAGACTAATCCAAGAGACTT+AGG 0.426488 1.3:-58706836 MS.gene90358:intron
TCAGGCAGAGTCAAGATAAC+GGG 0.428996 1.3:+58710184 None:intergenic
GTCGTTGCTCGTGCGAAAAC+CGG 0.438454 1.3:-58712505 MS.gene90358:CDS
AACCTAGCTCTTCGAAGCTT+CGG 0.438740 1.3:+58712626 None:intergenic
ATAACATTACCTAAGTCTCT+TGG 0.449672 1.3:+58706827 None:intergenic
TTCTGGTACTTCTATCTCCT+TGG 0.454942 1.3:-58708161 MS.gene90358:intron
ACGGGAAGAGCATACAGTTC+TGG 0.456133 1.3:-58708178 MS.gene90358:CDS
TTGCAGCAAGCAGCACTGGT+TGG 0.456175 1.3:-58711552 MS.gene90358:intron
TCTTTACCTTCAAGAATCAA+TGG 0.459425 1.3:+58712529 None:intergenic
TAGGGATGACCTCATCCTTA+CGG 0.460048 1.3:+58710152 None:intergenic
GGTGCAAGAACGAAAACATT+AGG 0.462500 1.3:+58712403 None:intergenic
TAAAGATTCAACTGCACTCT+TGG 0.463233 1.3:+58707861 None:intergenic
ATTCTGAATTCGGAGTAGTA+AGG 0.464569 1.3:-58708467 MS.gene90358:CDS
GCACCTAAGGAAAATATTGT+TGG 0.467384 1.3:-58708528 MS.gene90358:CDS
TACGTATCCTGTCACACTGC+GGG 0.472114 1.3:+58708216 None:intergenic
AATCACGAGCCCAGGATTTG+AGG 0.472222 1.3:-58707004 MS.gene90358:CDS
CAATATGCTTGCTACTGACT+TGG 0.473105 1.3:-58712191 MS.gene90358:intron
CGCGTTTACGGTTGCTCCGG+CGG 0.475611 1.3:+58712693 None:intergenic
TCCAAGAGAAAATCAAGAAA+AGG 0.478895 1.3:-58706549 MS.gene90358:CDS
GAAATGCCCCGCAGTGTGAC+AGG 0.481074 1.3:-58708223 MS.gene90358:CDS
CATCCTTGCGATGTTGAAGT+TGG 0.484838 1.3:-58709799 MS.gene90358:CDS
CAGATCTTCTATTATCATAT+GGG 0.489340 1.3:-58710744 MS.gene90358:CDS
GATGTAGAGCAACTTATCAT+TGG 0.489837 1.3:+58709818 None:intergenic
GAGTCGTGAACTATGTCAAC+AGG 0.494125 1.3:-58712380 MS.gene90358:intron
TTCTGAATTCGGAGTAGTAA+GGG 0.495213 1.3:-58708466 MS.gene90358:CDS
GTGTTTGCAGCAAGCAGCAC+TGG 0.511131 1.3:-58711556 MS.gene90358:intron
AATAGACAAAACAACAAAAG+AGG 0.511196 1.3:-58706631 MS.gene90358:CDS
AGAAGACACTGGCAACTTCT+GGG 0.513801 1.3:+58710685 None:intergenic
AATTTCATTCCTCAAATCCT+GGG 0.518000 1.3:+58706995 None:intergenic
AAAAGATCTTACTTCTTCAA+AGG 0.519084 1.3:+58707939 None:intergenic
TGCGATGTTGAAGTTGGAGT+TGG 0.522591 1.3:-58709793 MS.gene90358:CDS
ATCTTTACGGTATAGGGCTG+AGG 0.523411 1.3:-58707845 MS.gene90358:intron
GGATCATACCCCAGCAGAGA+TGG 0.524252 1.3:+58706509 None:intergenic
ATTGAAACTATTCTTGGAGA+AGG 0.526200 1.3:-58709721 MS.gene90358:intron
GTAAACAGTTTCTGAAGCAA+TGG 0.526610 1.3:+58712454 None:intergenic
CTTGGCTATGCAAGCAGGAG+TGG 0.526639 1.3:+58711509 None:intergenic
TAGAGCAACTTATCATTGGC+AGG 0.531606 1.3:+58709822 None:intergenic
TTTCATCAGGAATTCAATGC+CGG 0.531649 1.3:-58708606 MS.gene90358:intron
GTTCGCGTTTACGGTTGCTC+CGG 0.534237 1.3:+58712690 None:intergenic
GGGAAATAATAATCACCGAC+GGG 0.535938 1.3:-58706574 MS.gene90358:CDS
GTAGGTTTCTACAGATGAGA+TGG 0.540473 1.3:-58707965 MS.gene90358:intron
TAAGCTTACCAGAGATGCAA+TGG 0.542536 1.3:-58706595 MS.gene90358:CDS
TTCTTATGTCTGCAACATCA+AGG 0.543076 1.3:-58710666 MS.gene90358:intron
GGAGTGGAGATTAAAACATC+GGG 0.547109 1.3:+58711525 None:intergenic
CAAAACAACAAAAGAGGCAA+GGG 0.551778 1.3:-58706625 MS.gene90358:CDS
GCCTGAAGTGGGAAACCGTA+AGG 0.554707 1.3:-58710167 MS.gene90358:CDS
ACATCGCAAAGGTGTGGAGG+AGG 0.555139 1.3:+58706666 None:intergenic
AACAAAAGAGGCAAGGGCAA+TGG 0.555238 1.3:-58706619 MS.gene90358:CDS
TTCAGGCAGAGTCAAGATAA+CGG 0.557307 1.3:+58710183 None:intergenic
TATCTTGACTCTGCCTGAAG+TGG 0.559784 1.3:-58710179 MS.gene90358:CDS
GGAGAAGGATGAAGCACCTA+AGG 0.564618 1.3:-58708541 MS.gene90358:CDS
TTCCCGTCTCCATATTCTTG+AGG 0.564842 1.3:-58709043 MS.gene90358:intron
AAACACTTGGCTATGCAAGC+AGG 0.568069 1.3:+58711504 None:intergenic
TTCAACTGCACAACTTTGAG+CGG 0.568598 1.3:+58712217 None:intergenic
CCGCAACCAGTAATGGCCGC+CGG 0.569759 1.3:-58712709 None:intergenic
TTGTTCTGTGTGCTCACGTG+TGG 0.571100 1.3:+58712663 None:intergenic
TATCAGCCAGTCAACGGAGA+AGG 0.571214 1.3:-58708556 MS.gene90358:CDS
AGTGGGAAACCGTAAGGATG+AGG 0.579561 1.3:-58710161 MS.gene90358:CDS
AAGCTTACCAGAGATGCAAT+GGG 0.579573 1.3:-58706594 MS.gene90358:CDS
GCAACGTGCTGAATTGGAGT+AGG 0.579592 1.3:+58712556 None:intergenic
AAAAGGCAGTGACCCTCTGA+TGG 0.584949 1.3:-58706532 MS.gene90358:CDS
GTACATCGAATTGGACGTAC+GGG 0.585498 1.3:-58708196 MS.gene90358:CDS
TGTCCGAGAATCACGAGCCC+AGG 0.588508 1.3:-58707012 MS.gene90358:CDS
GCGGAACTTTGCATAGCTCA+AGG 0.591214 1.3:+58712236 None:intergenic
ACAAAACAACAAAAGAGGCA+AGG 0.591460 1.3:-58706626 MS.gene90358:CDS
TACCTCAAGAATATGGAGAC+GGG 0.591564 1.3:+58709041 None:intergenic
ATCTTGACTCTGCCTGAAGT+GGG 0.591582 1.3:-58710178 MS.gene90358:CDS
AGGAGTGGAGATTAAAACAT+CGG 0.592149 1.3:+58711524 None:intergenic
ATTCTAGTTTGGGATCAAGT+CGG 0.592413 1.3:-58709094 MS.gene90358:intron
CAGCAGAGATGGCCATCAGA+GGG 0.596159 1.3:+58706520 None:intergenic
GACAGATATCAGCCAGTCAA+CGG 0.597178 1.3:-58708562 MS.gene90358:CDS
CGTACATCGAATTGGACGTA+CGG 0.597566 1.3:-58708197 MS.gene90358:CDS
TGGCAACTTCTGGGTATGTG+TGG 0.598594 1.3:+58710694 None:intergenic
ACTGCACTCTTGGTGAGTAA+GGG 0.600084 1.3:+58707871 None:intergenic
TACTGAGTTAGACAAACACT+TGG 0.600301 1.3:+58711491 None:intergenic
CACAGAACAAGAAGTAGACG+AGG 0.606070 1.3:-58712650 MS.gene90358:CDS
TCTGGGACATCGCAAAGGTG+TGG 0.611172 1.3:+58706660 None:intergenic
GTTGGGGACAATGAAAACAA+TGG 0.611219 1.3:-58707916 MS.gene90358:CDS
AATTAGATAATCAAATAGGC+CGG 0.612982 1.3:+58708587 None:intergenic
GACCGAAGCTTCGAAGAGCT+AGG 0.613429 1.3:-58712628 MS.gene90358:CDS
ACTCCAACTTCAACATCGCA+AGG 0.621489 1.3:+58709796 None:intergenic
TGGGAAATAATAATCACCGA+CGG 0.622669 1.3:-58706575 MS.gene90358:CDS
TCTGATGGCCATCTCTGCTG+GGG 0.623283 1.3:-58706517 None:intergenic
CCAGCAGAGATGGCCATCAG+AGG 0.626747 1.3:+58706519 None:intergenic
GGGACATCGCAAAGGTGTGG+AGG 0.629288 1.3:+58706663 None:intergenic
TGAAACTCTAGTTCTTGATG+AGG 0.636636 1.3:-58711439 MS.gene90358:intron
ATACCTCAAGAATATGGAGA+CGG 0.637365 1.3:+58709040 None:intergenic
GCAAAGGTGTGGAGGAGGAG+CGG 0.643144 1.3:+58706671 None:intergenic
TCTGAATTCGGAGTAGTAAG+GGG 0.647959 1.3:-58708465 MS.gene90358:CDS
GGTAATCTGGGACATCGCAA+AGG 0.648080 1.3:+58706655 None:intergenic
ATATGGAGACGGGAATTCTG+AGG 0.653312 1.3:+58709051 None:intergenic
TGTTGACATAGTTCACGACT+CGG 0.662274 1.3:+58712382 None:intergenic
GTGGAGATTAAAACATCGGG+AGG 0.679011 1.3:+58711528 None:intergenic
TTGCAGACATAAGAAGACAC+TGG 0.684106 1.3:+58710674 None:intergenic
CAGGCAGAGTCAAGATAACG+GGG 0.698716 1.3:+58710185 None:intergenic
ACGTATCCTGTCACACTGCG+GGG 0.709245 1.3:+58708217 None:intergenic
GTACGTATCCTGTCACACTG+CGG 0.709671 1.3:+58708215 None:intergenic
GGAAATAATAATCACCGACG+GGG 0.733097 1.3:-58706573 MS.gene90358:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATAAAATAAAAA+GGG + chr1.3:58708593-58708612 None:intergenic 0.0%
!! TATATATATATAAAATAAAA+AGG + chr1.3:58708594-58708613 None:intergenic 0.0%
!! ATAAAAATATTCAAAGAAAA+TGG + chr1.3:58709361-58709380 None:intergenic 10.0%
!! ATAATTAATTGAAAATTAGA+TGG - chr1.3:58710442-58710461 MS.gene90358:intron 10.0%
!! CTATATGATAAAAAAAAAAT+AGG - chr1.3:58711781-58711800 MS.gene90358:intron 10.0%
!!! CTTTTAAATTTTTATAATGT+TGG - chr1.3:58707958-58707977 MS.gene90358:CDS 10.0%
!!! TAATTTCATTTTTAAACTAA+AGG + chr1.3:58711497-58711516 None:intergenic 10.0%
!!! TTAATATATAGATGATATTT+TGG - chr1.3:58712102-58712121 MS.gene90358:intron 10.0%
!! AAGTATTCTATAAAAAAACT+TGG + chr1.3:58710396-58710415 None:intergenic 15.0%
!! TGATAAAAAAAAAATAGGAA+CGG - chr1.3:58711786-58711805 MS.gene90358:intron 15.0%
!! TTAAAGATTATATTACTAAG+TGG - chr1.3:58709597-58709616 MS.gene90358:intron 15.0%
!! TTATATTTGTATCATTTGAT+TGG - chr1.3:58707848-58707867 MS.gene90358:CDS 15.0%
!!! AAAAGTTAAATTTTATCACA+TGG - chr1.3:58709658-58709677 MS.gene90358:intron 15.0%
!!! AAAGAAGTAACATTAATTTT+TGG + chr1.3:58707879-58707898 None:intergenic 15.0%
!!! AATTTTCAATTAATTATGCT+TGG + chr1.3:58710439-58710458 None:intergenic 15.0%
!!! ATGTTGGTTAATTTTAATTT+TGG - chr1.3:58707974-58707993 MS.gene90358:intron 15.0%
!!! ATTCTATTTGTTTTAGAATA+TGG - chr1.3:58707606-58707625 MS.gene90358:intron 15.0%
!!! TAACTTTTATTACAAAGAAT+GGG + chr1.3:58709646-58709665 None:intergenic 15.0%
!!! TGCAAAAAATATTCTAAAAA+TGG - chr1.3:58707186-58707205 MS.gene90358:intron 15.0%
!!! TTAACTTTTATTACAAAGAA+TGG + chr1.3:58709647-58709666 None:intergenic 15.0%
!! AAAAAATAACTGAAAAGACA+TGG + chr1.3:58712083-58712102 None:intergenic 20.0%
!! AAACTTCACTCAAATTATTT+GGG - chr1.3:58708302-58708321 MS.gene90358:intron 20.0%
!! AACAAACATTGGATTATTAT+AGG - chr1.3:58711896-58711915 MS.gene90358:intron 20.0%
!! AATACTTTGCAAAATTTACT+TGG + chr1.3:58711128-58711147 None:intergenic 20.0%
!! ACAAACATTGGATTATTATA+GGG - chr1.3:58711897-58711916 MS.gene90358:intron 20.0%
!! AGAAATGCAAAATATCAATT+TGG + chr1.3:58707244-58707263 None:intergenic 20.0%
!! ATAAACATTTAATAGAAAGC+TGG - chr1.3:58707506-58707525 MS.gene90358:intron 20.0%
!! ATAATTAGAGTTGTATACTA+TGG - chr1.3:58710862-58710881 MS.gene90358:intron 20.0%
!! ATCAACTATAAAGAAATGAT+GGG + chr1.3:58708761-58708780 None:intergenic 20.0%
!! ATTGTTACTGTATGTAAATT+TGG - chr1.3:58712421-58712440 MS.gene90358:CDS 20.0%
!! CTAAAATTAGATTCTGAATT+CGG - chr1.3:58710738-58710757 MS.gene90358:CDS 20.0%
!! TAAACTTCACTCAAATTATT+TGG - chr1.3:58708301-58708320 MS.gene90358:intron 20.0%
!! TACTAAACTAAACAAACAAT+AGG + chr1.3:58707816-58707835 None:intergenic 20.0%
!! TATCAACTATAAAGAAATGA+TGG + chr1.3:58708762-58708781 None:intergenic 20.0%
!! TATGATATAACATGTAAGAT+TGG + chr1.3:58709793-58709812 None:intergenic 20.0%
!! TATTGTATCATATCTTTCTT+TGG - chr1.3:58709192-58709211 MS.gene90358:intron 20.0%
!! TGATATTGTAATGTTAATTG+CGG - chr1.3:58709140-58709159 MS.gene90358:intron 20.0%
!! TTGATATCCAAATTATTGTT+GGG - chr1.3:58707918-58707937 MS.gene90358:CDS 20.0%
!! TTGGTAAATAATAGAAAAGA+AGG + chr1.3:58709267-58709286 None:intergenic 20.0%
!! TTGTGTAATATACTTTCTAT+CGG - chr1.3:58708835-58708854 MS.gene90358:intron 20.0%
!!! ATGAATTTTATGTCAAAACA+AGG - chr1.3:58708148-58708167 MS.gene90358:intron 20.0%
!!! ATGTAATGAAGATTTTTAAG+TGG - chr1.3:58708193-58708212 MS.gene90358:CDS 20.0%
!!! ATTCATATCTTTGTTTCATT+GGG - chr1.3:58710901-58710920 MS.gene90358:intron 20.0%
!!! CTGTTATGTGATATTATTTT+AGG - chr1.3:58708905-58708924 MS.gene90358:intron 20.0%
!!! GAAAAATGAAAGAAGTATAT+TGG + chr1.3:58709286-58709305 None:intergenic 20.0%
!!! GAAATATTAGGAGAAATTTT+TGG - chr1.3:58710287-58710306 MS.gene90358:intron 20.0%
!!! TATAAGTTTGTTTAGTTACA+TGG - chr1.3:58707363-58707382 MS.gene90358:intron 20.0%
!!! TTTCTTAAGTTCAAAACTTT+TGG + chr1.3:58708174-58708193 None:intergenic 20.0%
!!! TTTGATTTTTCAGATATATG+TGG - chr1.3:58706943-58706962 MS.gene90358:intron 20.0%
! AAAACTATAAATGTTCAGAC+TGG + chr1.3:58710034-58710053 None:intergenic 25.0%
! AAAAGATCTTACTTCTTCAA+AGG + chr1.3:58711279-58711298 None:intergenic 25.0%
! AACTTCACTCAAATTATTTG+GGG - chr1.3:58708303-58708322 MS.gene90358:intron 25.0%
! AACTTCTTCAAACATGAAAA+AGG + chr1.3:58712459-58712478 None:intergenic 25.0%
! AAGAAATTAGAAACAGAAAC+AGG - chr1.3:58708784-58708803 MS.gene90358:intron 25.0%
! AATAGACAAAACAACAAAAG+AGG - chr1.3:58712584-58712603 MS.gene90358:CDS 25.0%
! AATATACCAAAAGAACAACA+CGG + chr1.3:58711179-58711198 None:intergenic 25.0%
! AATCTCAAGCTGTTAAATAT+AGG + chr1.3:58709706-58709725 None:intergenic 25.0%
! AATCTTTAATATCATGCCAT+TGG + chr1.3:58709586-58709605 None:intergenic 25.0%
! AATTACATACCTCAAGAATA+TGG + chr1.3:58710184-58710203 None:intergenic 25.0%
! AATTAGATAATCAAATAGGC+CGG + chr1.3:58710631-58710650 None:intergenic 25.0%
! AGATGCTTTGTAATATAATG+TGG - chr1.3:58708677-58708696 MS.gene90358:intron 25.0%
! ATATAACATGTAAGATTGGA+TGG + chr1.3:58709789-58709808 None:intergenic 25.0%
! ATCTACTACATGAACTATAA+AGG + chr1.3:58707423-58707442 None:intergenic 25.0%
! CACATTGAATTAACAAACAT+TGG - chr1.3:58711885-58711904 MS.gene90358:intron 25.0%
! CAGATCTTCTATTATCATAT+GGG - chr1.3:58708471-58708490 MS.gene90358:CDS 25.0%
! CATAAAACCCAACAATAATT+TGG + chr1.3:58707928-58707947 None:intergenic 25.0%
! CTATAATACCAAAAGAAAGA+CGG + chr1.3:58710217-58710236 None:intergenic 25.0%
! CTGCTCAAATAAAATTTCAA+AGG + chr1.3:58712491-58712510 None:intergenic 25.0%
! CTTGATATCCAAATTATTGT+TGG - chr1.3:58707917-58707936 MS.gene90358:CDS 25.0%
! GTAAATAATAGAAAAGAAGG+CGG + chr1.3:58709264-58709283 None:intergenic 25.0%
! GTTAAATATAGGTTCTTGAA+TGG + chr1.3:58709695-58709714 None:intergenic 25.0%
! TAAAAATGTTCAGCAATTCT+GGG - chr1.3:58709084-58709103 MS.gene90358:CDS 25.0%
! TCGCAATTAGATAATCAAAT+AGG + chr1.3:58710635-58710654 None:intergenic 25.0%
! TCTACTACATGAACTATAAA+GGG + chr1.3:58707422-58707441 None:intergenic 25.0%
! TCTTAAATGTAGATCGAATT+AGG - chr1.3:58707145-58707164 MS.gene90358:intron 25.0%
! TGACTTCAAAAATGTATACA+CGG - chr1.3:58710776-58710795 MS.gene90358:intron 25.0%
! TGCGTAAATATTAGATTTAG+AGG - chr1.3:58707480-58707499 MS.gene90358:intron 25.0%
! TTATCTCTGTAAAATTGTAC+TGG - chr1.3:58708866-58708885 MS.gene90358:intron 25.0%
! TTGTTAGAAACAATTGCAAA+TGG + chr1.3:58708954-58708973 None:intergenic 25.0%
! TTTCAATTAATTATGCTTGG+AGG + chr1.3:58710436-58710455 None:intergenic 25.0%
! TTTCAGATTGAAACTATTCT+TGG - chr1.3:58709488-58709507 MS.gene90358:intron 25.0%
!! AAGAAGTAAGATCTTTTGTT+GGG - chr1.3:58711282-58711301 MS.gene90358:intron 25.0%
!! AGAATTGCTGAACATTTTTA+GGG + chr1.3:58709084-58709103 None:intergenic 25.0%
!! ATAGAAACATGATGACATTT+TGG + chr1.3:58710369-58710388 None:intergenic 25.0%
!! ATTTTGAGCAGACATATTTA+AGG + chr1.3:58709937-58709956 None:intergenic 25.0%
!! CTTAGATTAGCTATAATAGA+GGG - chr1.3:58708335-58708354 MS.gene90358:intron 25.0%
!! CTTATCAATGATTTTATGTC+TGG + chr1.3:58709526-58709545 None:intergenic 25.0%
!! GATTCATATCTTTGTTTCAT+TGG - chr1.3:58710900-58710919 MS.gene90358:intron 25.0%
!! GTATCCAAAATAATCTTTTC+AGG - chr1.3:58708448-58708467 MS.gene90358:CDS 25.0%
!! TAAGATTTAAAATGTTCTCC+CGG + chr1.3:58707130-58707149 None:intergenic 25.0%
!! TAATACACTCTCAAACATTT+TGG + chr1.3:58708129-58708148 None:intergenic 25.0%
!! TATTTAACAGCTTGAGATTT+TGG - chr1.3:58709707-58709726 MS.gene90358:intron 25.0%
!! TCTTAGATTAGCTATAATAG+AGG - chr1.3:58708334-58708353 MS.gene90358:intron 25.0%
!! TGAATATCAGAACTTTCTTT+TGG + chr1.3:58709449-58709468 None:intergenic 25.0%
!! TGACTAAACACAAACTTTTA+AGG + chr1.3:58711975-58711994 None:intergenic 25.0%
!! TTATAGCTAATCTAAGATTC+AGG + chr1.3:58708331-58708350 None:intergenic 25.0%
!! TTTTGGATAGAAAATCAAAC+TGG + chr1.3:58708112-58708131 None:intergenic 25.0%
!! TTTTGTCTATTAGGTAATCT+GGG + chr1.3:58712575-58712594 None:intergenic 25.0%
!!! AATGAAGATTTTTAAGTGGA+AGG - chr1.3:58708197-58708216 MS.gene90358:CDS 25.0%
!!! AATTTTTGGAGATTTTGGTT+TGG - chr1.3:58710301-58710320 MS.gene90358:intron 25.0%
!!! ATATTTTTGTTGAGAGTATG+GGG + chr1.3:58711408-58711427 None:intergenic 25.0%
!!! ATGGATTAGAAGATGAAAAA+AGG + chr1.3:58712314-58712333 None:intergenic 25.0%
!!! CATTTTTCGTTTTTTTTTCC+TGG - chr1.3:58709298-58709317 MS.gene90358:intron 25.0%
!!! CTTTTGTTGTTTTGTCTATT+AGG + chr1.3:58712584-58712603 None:intergenic 25.0%
!!! GATATTTTTGTTGAGAGTAT+GGG + chr1.3:58711409-58711428 None:intergenic 25.0%
!!! GTTATCCTATTTTGTTTTTG+AGG - chr1.3:58711736-58711755 MS.gene90358:intron 25.0%
!!! TGATATTTTTGTTGAGAGTA+TGG + chr1.3:58711410-58711429 None:intergenic 25.0%
AAAATGGAAAAACAAAGGTG+TGG + chr1.3:58712341-58712360 None:intergenic 30.0%
AAATCATTCAAAGCTCTCAT+TGG + chr1.3:58711445-58711464 None:intergenic 30.0%
AAATTTCATTCCTCAAATCC+TGG + chr1.3:58712224-58712243 None:intergenic 30.0%
AATTTCATTCCTCAAATCCT+GGG + chr1.3:58712223-58712242 None:intergenic 30.0%
ACATTTAATAGAAAGCTGGA+AGG - chr1.3:58707510-58707529 MS.gene90358:intron 30.0%
ACTTTGCAAAATTTACTTGG+TGG + chr1.3:58711125-58711144 None:intergenic 30.0%
AGAGACTTAGGTAATGTTAT+TGG - chr1.3:58712391-58712410 MS.gene90358:CDS 30.0%
AGCCTAAAATGGAAAAACAA+AGG + chr1.3:58712346-58712365 None:intergenic 30.0%
AGTTGAATCTTTACGGTATA+GGG - chr1.3:58711364-58711383 MS.gene90358:intron 30.0%
AGTTTCAAGAGAACCATTAA+TGG + chr1.3:58707763-58707782 None:intergenic 30.0%
AGTTTCTTCCTATCAACATT+AGG + chr1.3:58706788-58706807 None:intergenic 30.0%
ATAACATTACCTAAGTCTCT+TGG + chr1.3:58712391-58712410 None:intergenic 30.0%
ATAATGTGTGTGCATTAGAT+AGG + chr1.3:58711707-58711726 None:intergenic 30.0%
ATACAGATAAGAATAGGAAC+GGG - chr1.3:58711573-58711592 MS.gene90358:intron 30.0%
ATGAGAGAAGATAGATCAAT+TGG + chr1.3:58711934-58711953 None:intergenic 30.0%
ATTGAAACTATTCTTGGAGA+AGG - chr1.3:58709494-58709513 MS.gene90358:intron 30.0%
ATTTAATAGAAAGCTGGAAG+GGG - chr1.3:58707512-58707531 MS.gene90358:intron 30.0%
CAAAGATTAGAAAATGAGAG+AGG + chr1.3:58710090-58710109 None:intergenic 30.0%
CATTTAATAGAAAGCTGGAA+GGG - chr1.3:58707511-58707530 MS.gene90358:intron 30.0%
CTAAAAATGTTCAGCAATTC+TGG - chr1.3:58709083-58709102 MS.gene90358:CDS 30.0%
CTACTACATGAACTATAAAG+GGG + chr1.3:58707421-58707440 None:intergenic 30.0%
CTATACTGCATCAGTTTAAT+GGG - chr1.3:58709867-58709886 MS.gene90358:intron 30.0%
GATACAGATAAGAATAGGAA+CGG - chr1.3:58711572-58711591 MS.gene90358:intron 30.0%
GATCCCAAATATAGAAAAGA+AGG + chr1.3:58709231-58709250 None:intergenic 30.0%
GATGAAAACAAAATAACCTC+AGG + chr1.3:58710060-58710079 None:intergenic 30.0%
GCAGATCTTCTATTATCATA+TGG - chr1.3:58708470-58708489 MS.gene90358:CDS 30.0%
GGGAAAGAAGATAAAAATGA+AGG + chr1.3:58707401-58707420 None:intergenic 30.0%
GTAAATGATTTCAGTGAACA+TGG + chr1.3:58710933-58710952 None:intergenic 30.0%
GTTCCTACTAGTGAAATATT+AGG - chr1.3:58710275-58710294 MS.gene90358:intron 30.0%
TATGTCTGCTCAAAATGATT+TGG - chr1.3:58709941-58709960 MS.gene90358:intron 30.0%
TCCAAGAGAAAATCAAGAAA+AGG - chr1.3:58712666-58712685 MS.gene90358:CDS 30.0%
TCTATACTGCATCAGTTTAA+TGG - chr1.3:58709866-58709885 MS.gene90358:intron 30.0%
TCTCCTAATATTTCACTAGT+AGG + chr1.3:58710281-58710300 None:intergenic 30.0%
TCTTTACCTTCAAGAATCAA+TGG + chr1.3:58706689-58706708 None:intergenic 30.0%
TGACCATTTCTAATCCAAAA+TGG + chr1.3:58707104-58707123 None:intergenic 30.0%
TGAGCATAGAAATTGAAACA+GGG + chr1.3:58706868-58706887 None:intergenic 30.0%
TGTTCAATGTCTACTAGAAT+TGG + chr1.3:58708386-58708405 None:intergenic 30.0%
TGTTTACTCCTAATGTTGAT+AGG - chr1.3:58706777-58706796 MS.gene90358:intron 30.0%
TTAATTCAATGTGACACGAT+AGG + chr1.3:58711878-58711897 None:intergenic 30.0%
TTGAGCATAGAAATTGAAAC+AGG + chr1.3:58706869-58706888 None:intergenic 30.0%
TTGCAAGACATTTAAGTCTA+GGG + chr1.3:58707171-58707190 None:intergenic 30.0%
TTTAAGTGGAAGGAAAATGA+CGG - chr1.3:58708241-58708260 MS.gene90358:intron 30.0%
TTTGCAAGACATTTAAGTCT+AGG + chr1.3:58707172-58707191 None:intergenic 30.0%
TTTGTAATATAATGTGGACG+TGG - chr1.3:58708683-58708702 MS.gene90358:intron 30.0%
TTTGTCTTACAAACTTACCA+AGG + chr1.3:58711074-58711093 None:intergenic 30.0%
! AAACTCTCAAATTCTGCTTT+TGG + chr1.3:58708223-58708242 None:intergenic 30.0%
! ACTTGTTTCCTCATTTTCTT+TGG - chr1.3:58707303-58707322 MS.gene90358:intron 30.0%
! AGAAGTAAGATCTTTTGTTG+GGG - chr1.3:58711283-58711302 MS.gene90358:intron 30.0%
! CAATACTTTTAAGCCTCATA+CGG - chr1.3:58711537-58711556 MS.gene90358:CDS 30.0%
! CAGAATTGCTGAACATTTTT+AGG + chr1.3:58709085-58709104 None:intergenic 30.0%
! GAAGAAGTAAGATCTTTTGT+TGG - chr1.3:58711281-58711300 MS.gene90358:intron 30.0%
! GATCCAACAATATTTTCCTT+AGG + chr1.3:58710693-58710712 None:intergenic 30.0%
! GTTAACCTATTTTGTGTTTG+AGG - chr1.3:58711657-58711676 MS.gene90358:intron 30.0%
! GTTTTGTCTATTAGGTAATC+TGG + chr1.3:58712576-58712595 None:intergenic 30.0%
! TCTGCCTGAAAAGATTATTT+TGG + chr1.3:58708455-58708474 None:intergenic 30.0%
! TGATCTTTTTGCACTTTTGA+AGG - chr1.3:58708812-58708831 MS.gene90358:intron 30.0%
! TGGTTTGATGATTGTTCTAA+TGG - chr1.3:58707626-58707645 MS.gene90358:intron 30.0%
! TTGATAAGTTTTCACCTAAC+AGG - chr1.3:58709538-58709557 MS.gene90358:intron 30.0%
! TTTTGGTATTATAGCTGCTA+AGG - chr1.3:58710223-58710242 MS.gene90358:CDS 30.0%
!! ACACCATTTTGGATTAGAAA+TGG - chr1.3:58707098-58707117 MS.gene90358:intron 30.0%
!! GGAGAAATTTTTGGAGATTT+TGG - chr1.3:58710296-58710315 MS.gene90358:intron 30.0%
!! TTGATGAGCTTATTTTCATC+AGG - chr1.3:58710596-58710615 MS.gene90358:intron 30.0%
!!! ATCCTATTTTGTTTTTGAGG+TGG - chr1.3:58711739-58711758 MS.gene90358:intron 30.0%
!!! ATTTGAGAGTTTTAAGTGGA+AGG - chr1.3:58708231-58708250 MS.gene90358:CDS 30.0%
!!! CACCTTTGTTTTTCCATTTT+AGG - chr1.3:58712341-58712360 MS.gene90358:intron 30.0%
!!! CAGAATTTGAGAGTTTTAAG+TGG - chr1.3:58708227-58708246 MS.gene90358:CDS 30.0%
!!! TCCTATTTTGTTTTTGAGGT+GGG - chr1.3:58711740-58711759 MS.gene90358:intron 30.0%
AATCCACGTTTAAGAACACA+AGG + chr1.3:58710518-58710537 None:intergenic 35.0%
AATCCTTGTGTTCTTAAACG+TGG - chr1.3:58710512-58710531 MS.gene90358:intron 35.0%
ACAAAACAACAAAAGAGGCA+AGG - chr1.3:58712589-58712608 MS.gene90358:CDS 35.0%
ACAGGAAAAAATGTTGAACC+AGG + chr1.3:58709319-58709338 None:intergenic 35.0%
ACTATAAATGTTCAGACTGG+TGG + chr1.3:58710031-58710050 None:intergenic 35.0%
AGAGTGCAGTTGAATCTTTA+CGG - chr1.3:58711357-58711376 MS.gene90358:intron 35.0%
AGCATAACACATTCAATACC+AGG + chr1.3:58712267-58712286 None:intergenic 35.0%
AGGAGTGGAGATTAAAACAT+CGG + chr1.3:58707694-58707713 None:intergenic 35.0%
AGTGGTCAAGAATTTGAACT+TGG - chr1.3:58709615-58709634 MS.gene90358:intron 35.0%
ATACCTCAAGAATATGGAGA+CGG + chr1.3:58710178-58710197 None:intergenic 35.0%
ATCCACCTCAAACACAAAAT+AGG + chr1.3:58711665-58711684 None:intergenic 35.0%
ATTATTTCCCATTGCATCTC+TGG + chr1.3:58712631-58712650 None:intergenic 35.0%
ATTCTGAATTCGGAGTAGTA+AGG - chr1.3:58710748-58710767 MS.gene90358:CDS 35.0%
CAAAACAACAAAAGAGGCAA+GGG - chr1.3:58712590-58712609 MS.gene90358:CDS 35.0%
CAAGGAAAATCTAAATGCCA+AGG + chr1.3:58711223-58711242 None:intergenic 35.0%
CAGTTGAATCTTTACGGTAT+AGG - chr1.3:58711363-58711382 MS.gene90358:intron 35.0%
CCAAACTAGAATGATAGAGA+GGG + chr1.3:58710113-58710132 None:intergenic 35.0%
CCCAAATATAGAAAAGAAGG+CGG + chr1.3:58709228-58709247 None:intergenic 35.0%
CGTTTAAGAACACAAGGATT+TGG + chr1.3:58710512-58710531 None:intergenic 35.0%
GAACGGGTACAAGTTTAATA+TGG - chr1.3:58711589-58711608 MS.gene90358:intron 35.0%
GACAGGATACAGATAAGAAT+AGG - chr1.3:58711567-58711586 MS.gene90358:intron 35.0%
GAGCATAGAAATTGAAACAG+GGG + chr1.3:58706867-58706886 None:intergenic 35.0%
GATGTAGAGCAACTTATCAT+TGG + chr1.3:58709400-58709419 None:intergenic 35.0%
GATTAGAAATGGTCAATACC+GGG - chr1.3:58707109-58707128 MS.gene90358:intron 35.0%
GCACCTAAGGAAAATATTGT+TGG - chr1.3:58710687-58710706 MS.gene90358:CDS 35.0%
GCATAACACATTCAATACCA+GGG + chr1.3:58712266-58712285 None:intergenic 35.0%
GGAACGGTACAAGTTTAATA+TGG - chr1.3:58711802-58711821 MS.gene90358:intron 35.0%
GGATTAGAAATGGTCAATAC+CGG - chr1.3:58707108-58707127 MS.gene90358:intron 35.0%
GTGTGCATTAGATAGGAATA+GGG + chr1.3:58711700-58711719 None:intergenic 35.0%
TAAAGATTCAACTGCACTCT+TGG + chr1.3:58711357-58711376 None:intergenic 35.0%
TACATGTCATACACTGATGT+TGG - chr1.3:58709814-58709833 MS.gene90358:CDS 35.0%
TACTGAGTTAGACAAACACT+TGG + chr1.3:58707727-58707746 None:intergenic 35.0%
TAGAAACCTACAAGGAAACA+AGG + chr1.3:58711241-58711260 None:intergenic 35.0%
TGGGAAATAATAATCACCGA+CGG - chr1.3:58712640-58712659 MS.gene90358:CDS 35.0%
TGTGTGCATTAGATAGGAAT+AGG + chr1.3:58711701-58711720 None:intergenic 35.0%
TTCTGAATTCGGAGTAGTAA+GGG - chr1.3:58710749-58710768 MS.gene90358:intron 35.0%
TTCTTATCTGTATCCTGTCA+TGG + chr1.3:58711566-58711585 None:intergenic 35.0%
TTCTTATGTCTGCAACATCA+AGG - chr1.3:58708549-58708568 MS.gene90358:CDS 35.0%
TTTCATCAGGAATTCAATGC+CGG - chr1.3:58710609-58710628 MS.gene90358:intron 35.0%
TTTGTCTAACTCAGTACTTC+AGG - chr1.3:58707731-58707750 MS.gene90358:intron 35.0%
! AAATTTACTTGGTGGAGAAG+AGG + chr1.3:58711117-58711136 None:intergenic 35.0%
! AACCTATTTTGTGTTTGAGG+TGG - chr1.3:58711660-58711679 MS.gene90358:intron 35.0%
! ACCGCCTTCTTTTCTATATT+TGG - chr1.3:58709224-58709243 MS.gene90358:intron 35.0%
! CCGCCTTCTTTTCTATATTT+GGG - chr1.3:58709225-58709244 MS.gene90358:intron 35.0%
! GCCTTTTCTTGATTTTCTCT+TGG + chr1.3:58712670-58712689 None:intergenic 35.0%
! GTTTTTCCATTTTAGGCTGA+CGG - chr1.3:58712348-58712367 MS.gene90358:intron 35.0%
! TAAAAGTGTATCAGCTACAC+AGG + chr1.3:58709337-58709356 None:intergenic 35.0%
!! ATTATGCTTGGAGGTTTTGA+TGG + chr1.3:58710427-58710446 None:intergenic 35.0%
!! ATTCTAGTTTGGGATCAAGT+CGG - chr1.3:58710121-58710140 MS.gene90358:intron 35.0%
!! CATTTATAGTTTTGCACCTG+AGG - chr1.3:58710041-58710060 MS.gene90358:intron 35.0%
!! CCTCTCTATCATTCTAGTTT+GGG - chr1.3:58710111-58710130 MS.gene90358:intron 35.0%
!! CTTTCTGACATGTTTTTGTC+TGG - chr1.3:58710822-58710841 MS.gene90358:intron 35.0%
!! GATGATTGACATTGTTTTGC+AGG - chr1.3:58712152-58712171 MS.gene90358:intron 35.0%
!! GATTTTCCTTGTTTCCTTGT+AGG - chr1.3:58711232-58711251 MS.gene90358:intron 35.0%
!! GTAAACAGTTTCTGAAGCAA+TGG + chr1.3:58706764-58706783 None:intergenic 35.0%
!! TCTAATCCGTGTTGTTCTTT+TGG - chr1.3:58711170-58711189 MS.gene90358:intron 35.0%
!! TGAAACTCTAGTTCTTGATG+AGG - chr1.3:58707776-58707795 MS.gene90358:intron 35.0%
!!! CAAACTTTTAAGGCTCTGTT+TGG + chr1.3:58711965-58711984 None:intergenic 35.0%
!!! CCTATTTTGTTTTTGAGGTG+GGG - chr1.3:58711741-58711760 MS.gene90358:intron 35.0%
!!! GATTATTTTGGATACCGATC+AGG + chr1.3:58708443-58708462 None:intergenic 35.0%
AAGCTTACCAGAGATGCAAT+GGG - chr1.3:58712621-58712640 MS.gene90358:CDS 40.0%
AATGCCAAGGTAATGTAGCT+TGG + chr1.3:58711210-58711229 None:intergenic 40.0%
ACAGGATACGTACATCGAAT+TGG - chr1.3:58711010-58711029 MS.gene90358:intron 40.0%
ACATCCAAGCTACATTACCT+TGG - chr1.3:58711203-58711222 MS.gene90358:intron 40.0%
ACCTAACAGGTTTATGCACT+CGG - chr1.3:58709551-58709570 MS.gene90358:intron 40.0%
ATACTGTGTGCGCATTAGAT+AGG + chr1.3:58711628-58711647 None:intergenic 40.0%
ATATGAACCTACTCAAGTGC+TGG + chr1.3:58707567-58707586 None:intergenic 40.0%
ATGCTGTGTGTGCATTAGAT+AGG + chr1.3:58711841-58711860 None:intergenic 40.0%
CAGACTAATCCAAGAGACTT+AGG - chr1.3:58712379-58712398 MS.gene90358:intron 40.0%
CCAAAATGGTGTGCTAATCA+TGG + chr1.3:58707090-58707109 None:intergenic 40.0%
CCCAAACTAGAATGATAGAG+AGG + chr1.3:58710114-58710133 None:intergenic 40.0%
CCCCACCTCAAAAACAAAAT+AGG + chr1.3:58711744-58711763 None:intergenic 40.0%
CTCATCTGTAGAAACCTACA+AGG + chr1.3:58711249-58711268 None:intergenic 40.0%
GGAAATAATAATCACCGACG+GGG - chr1.3:58712642-58712661 MS.gene90358:CDS 40.0%
GGAGTGGAGATTAAAACATC+GGG + chr1.3:58707693-58707712 None:intergenic 40.0%
GGGAAATAATAATCACCGAC+GGG - chr1.3:58712641-58712660 MS.gene90358:CDS 40.0%
GGTCATGGAACATAGACAAT+TGG + chr1.3:58708422-58708441 None:intergenic 40.0%
GGTGCAAGAACGAAAACATT+AGG + chr1.3:58706815-58706834 None:intergenic 40.0%
GTAGGTTTCTACAGATGAGA+TGG - chr1.3:58711250-58711269 MS.gene90358:intron 40.0%
GTTGGGGACAATGAAAACAA+TGG - chr1.3:58711299-58711318 MS.gene90358:intron 40.0%
TAAGCTTACCAGAGATGCAA+TGG - chr1.3:58712620-58712639 MS.gene90358:CDS 40.0%
TACCAAAAGAAAGACGGAAG+TGG + chr1.3:58710211-58710230 None:intergenic 40.0%
TACCTCAAGAATATGGAGAC+GGG + chr1.3:58710177-58710196 None:intergenic 40.0%
TAGAGCAACTTATCATTGGC+AGG + chr1.3:58709396-58709415 None:intergenic 40.0%
TAGGAACGTGTCATAGAACT+GGG + chr1.3:58710262-58710281 None:intergenic 40.0%
TCTATGTTCCATGACCTGAT+CGG - chr1.3:58708426-58708445 MS.gene90358:intron 40.0%
TCTGAATTCGGAGTAGTAAG+GGG - chr1.3:58710750-58710769 MS.gene90358:intron 40.0%
TGCTCACTCCAAAGAAAATG+AGG + chr1.3:58707314-58707333 None:intergenic 40.0%
TGTGCGCATTAGATAGGAAT+GGG + chr1.3:58711622-58711641 None:intergenic 40.0%
TGTTGACATAGTTCACGACT+CGG + chr1.3:58706836-58706855 None:intergenic 40.0%
TTCAACTGCACAACTTTGAG+CGG + chr1.3:58707001-58707020 None:intergenic 40.0%
TTCAGGCAGAGTCAAGATAA+CGG + chr1.3:58709035-58709054 None:intergenic 40.0%
TTCTGGTACTTCTATCTCCT+TGG - chr1.3:58711054-58711073 MS.gene90358:intron 40.0%
TTGCAGACATAAGAAGACAC+TGG + chr1.3:58708544-58708563 None:intergenic 40.0%
! AAAACAAAGGTGTGGAGGAA+TGG + chr1.3:58712333-58712352 None:intergenic 40.0%
! AGCAAATGTTTTGCCAGAAC+CGG + chr1.3:58706732-58706751 None:intergenic 40.0%
! ATCCACTTCCGTCTTTCTTT+TGG - chr1.3:58710206-58710225 MS.gene90358:CDS 40.0%
! ATGGAAAAACAAAGGTGTGG+AGG + chr1.3:58712338-58712357 None:intergenic 40.0%
! CAATATGCTTGCTACTGACT+TGG - chr1.3:58707024-58707043 MS.gene90358:CDS 40.0%
! CCATGATTAGCACACCATTT+TGG - chr1.3:58707087-58707106 MS.gene90358:intron 40.0%
! CCCTCTCTATCATTCTAGTT+TGG - chr1.3:58710110-58710129 MS.gene90358:intron 40.0%
!! GCGATTCCATTGATTCTTGA+AGG - chr1.3:58706680-58706699 MS.gene90358:CDS 40.0%
!! TTTGGAGTTTTGCTCAACTC+AGG - chr1.3:58709959-58709978 MS.gene90358:intron 40.0%
AAACACTTGGCTATGCAAGC+AGG + chr1.3:58707714-58707733 None:intergenic 45.0%
AACAAAAGAGGCAAGGGCAA+TGG - chr1.3:58712596-58712615 MS.gene90358:CDS 45.0%
AACTCTGCAAAGTAAGTCCC+TGG - chr1.3:58712246-58712265 MS.gene90358:CDS 45.0%
AACTGCACTCTTGGTGAGTA+AGG + chr1.3:58711348-58711367 None:intergenic 45.0%
AAGAAGACACTGGCAACTTC+TGG + chr1.3:58708534-58708553 None:intergenic 45.0%
ACTCCAACTTCAACATCGCA+AGG + chr1.3:58709422-58709441 None:intergenic 45.0%
ACTGCACTCTTGGTGAGTAA+GGG + chr1.3:58711347-58711366 None:intergenic 45.0%
AGAAGACACTGGCAACTTCT+GGG + chr1.3:58708533-58708552 None:intergenic 45.0%
ATATGGAGACGGGAATTCTG+AGG + chr1.3:58710167-58710186 None:intergenic 45.0%
ATCTTGACTCTGCCTGAAGT+GGG - chr1.3:58709037-58709056 MS.gene90358:intron 45.0%
ATCTTTACGGTATAGGGCTG+AGG - chr1.3:58711370-58711389 MS.gene90358:intron 45.0%
CACAGAACAAGAAGTAGACG+AGG - chr1.3:58706565-58706584 MS.gene90358:CDS 45.0%
CATCCTTGCGATGTTGAAGT+TGG - chr1.3:58709416-58709435 MS.gene90358:intron 45.0%
CCTAACAGGTTTATGCACTC+GGG - chr1.3:58709552-58709571 MS.gene90358:intron 45.0%
CGTACATCGAATTGGACGTA+CGG - chr1.3:58711018-58711037 MS.gene90358:intron 45.0%
CTTCAGGCAGCATCCATTAA+TGG - chr1.3:58707747-58707766 MS.gene90358:intron 45.0%
GACAGATATCAGCCAGTCAA+CGG - chr1.3:58710653-58710672 MS.gene90358:intron 45.0%
GAGTCGTGAACTATGTCAAC+AGG - chr1.3:58706835-58706854 MS.gene90358:intron 45.0%
GCTTTCTCTTGCTGATGAAC+AGG - chr1.3:58710958-58710977 MS.gene90358:intron 45.0%
GTACATCGAATTGGACGTAC+GGG - chr1.3:58711019-58711038 MS.gene90358:intron 45.0%
GTAGGAACGTGTCATAGAAC+TGG + chr1.3:58710263-58710282 None:intergenic 45.0%
GTGGAGATTAAAACATCGGG+AGG + chr1.3:58707690-58707709 None:intergenic 45.0%
GTGTGCGCATTAGATAGGAA+TGG + chr1.3:58711623-58711642 None:intergenic 45.0%
GTTTATGCACTCGGGATAGT+TGG - chr1.3:58709560-58709579 MS.gene90358:intron 45.0%
TAACTGAGACAGGAACGACA+TGG + chr1.3:58712028-58712047 None:intergenic 45.0%
TAGGGATGACCTCATCCTTA+CGG + chr1.3:58709066-58709085 None:intergenic 45.0%
TATCTTGACTCTGCCTGAAG+TGG - chr1.3:58709036-58709055 MS.gene90358:intron 45.0%
TCAGGCAGAGTCAAGATAAC+GGG + chr1.3:58709034-58709053 None:intergenic 45.0%
TGCGATGTTGAAGTTGGAGT+TGG - chr1.3:58709422-58709441 MS.gene90358:intron 45.0%
TGTGGTTTCGTTCGCGTTTA+CGG + chr1.3:58706537-58706556 None:intergenic 45.0%
TTCCCGTCTCCATATTCTTG+AGG - chr1.3:58710172-58710191 MS.gene90358:CDS 45.0%
TTCGCAAGTCTAACTGAGAC+AGG + chr1.3:58712038-58712057 None:intergenic 45.0%
TTTGGATACCGATCAGGTCA+TGG + chr1.3:58708437-58708456 None:intergenic 45.0%
! AACCTAGCTCTTCGAAGCTT+CGG + chr1.3:58706592-58706611 None:intergenic 45.0%
! ATTTTCTCTTGGATCCCCGT+CGG + chr1.3:58712659-58712678 None:intergenic 45.0%
!! AATAAAAATTTAAAAAATTG+AGG + chr1.3:58708726-58708745 None:intergenic 5.0%
AAAAGGCAGTGACCCTCTGA+TGG - chr1.3:58712683-58712702 MS.gene90358:CDS 50.0%
AATCACGAGCCCAGGATTTG+AGG - chr1.3:58712211-58712230 MS.gene90358:CDS 50.0%
AATCCTGGGCTCGTGATTCT+CGG + chr1.3:58712209-58712228 None:intergenic 50.0%
AGTGAGCCGTCAGCCTAAAA+TGG + chr1.3:58712357-58712376 None:intergenic 50.0%
AGTGGGAAACCGTAAGGATG+AGG - chr1.3:58709054-58709073 MS.gene90358:CDS 50.0%
AGTGTCTCCAGCACTTGAGT+AGG - chr1.3:58707557-58707576 MS.gene90358:intron 50.0%
ATAGAAAGCTGGAAGGGGCT+AGG - chr1.3:58707517-58707536 MS.gene90358:intron 50.0%
CAGGCAGAGTCAAGATAACG+GGG + chr1.3:58709033-58709052 None:intergenic 50.0%
CCCGAGTGCATAAACCTGTT+AGG + chr1.3:58709555-58709574 None:intergenic 50.0%
CCTCATACGGTTTCCATGAC+AGG - chr1.3:58711550-58711569 MS.gene90358:intron 50.0%
CCTGTCATGGAAACCGTATG+AGG + chr1.3:58711553-58711572 None:intergenic 50.0%
CTTCATCCTTCTCCGTTGAC+TGG + chr1.3:58710668-58710687 None:intergenic 50.0%
GCAACGTGCTGAATTGGAGT+AGG + chr1.3:58706662-58706681 None:intergenic 50.0%
GCGGAACTTTGCATAGCTCA+AGG + chr1.3:58706982-58707001 None:intergenic 50.0%
GGAATCGCAACGTGCTGAAT+TGG + chr1.3:58706668-58706687 None:intergenic 50.0%
GTACGTATCCTGTCACACTG+CGG + chr1.3:58711003-58711022 None:intergenic 50.0%
TACGTATCCTGTCACACTGC+GGG + chr1.3:58711002-58711021 None:intergenic 50.0%
TAGAAAGCTGGAAGGGGCTA+GGG - chr1.3:58707518-58707537 MS.gene90358:intron 50.0%
TATCAGCCAGTCAACGGAGA+AGG - chr1.3:58710659-58710678 MS.gene90358:intron 50.0%
TCCTTACGGTTTCCCACTTC+AGG + chr1.3:58709052-58709071 None:intergenic 50.0%
TGGCAACTTCTGGGTATGTG+TGG + chr1.3:58708524-58708543 None:intergenic 50.0%
TTGTTCTGTGTGCTCACGTG+TGG + chr1.3:58706555-58706574 None:intergenic 50.0%
! ACGGGAAGAGCATACAGTTC+TGG - chr1.3:58711037-58711056 MS.gene90358:intron 50.0%
! GGAGAAGGATGAAGCACCTA+AGG - chr1.3:58710674-58710693 MS.gene90358:CDS 50.0%
! GGTAATCTGGGACATCGCAA+AGG + chr1.3:58712563-58712582 None:intergenic 50.0%
ACGTATCCTGTCACACTGCG+GGG + chr1.3:58711001-58711020 None:intergenic 55.0%
CACTCGGGATAGTTGGCCAA+TGG - chr1.3:58709567-58709586 MS.gene90358:intron 55.0%
CAGCAGAGATGGCCATCAGA+GGG + chr1.3:58712698-58712717 None:intergenic 55.0%
CTCTGATGGCCATCTCTGCT+GGG - chr1.3:58712697-58712716 MS.gene90358:CDS 55.0%
CTTGGCTATGCAAGCAGGAG+TGG + chr1.3:58707709-58707728 None:intergenic 55.0%
GACCGAAGCTTCGAAGAGCT+AGG - chr1.3:58706587-58706606 MS.gene90358:CDS 55.0%
GCCTGAAGTGGGAAACCGTA+AGG - chr1.3:58709048-58709067 MS.gene90358:CDS 55.0%
GTCGTTGCTCGTGCGAAAAC+CGG - chr1.3:58706710-58706729 MS.gene90358:intron 55.0%
GTGTTTGCAGCAAGCAGCAC+TGG - chr1.3:58707659-58707678 MS.gene90358:intron 55.0%
GTTCGCGTTTACGGTTGCTC+CGG + chr1.3:58706528-58706547 None:intergenic 55.0%
TCAGACTGGTGGAAGCAGTG+TGG + chr1.3:58710020-58710039 None:intergenic 55.0%
TGGTGGAAGCAGTGTGGTTG+AGG + chr1.3:58710014-58710033 None:intergenic 55.0%
! ACATCGCAAAGGTGTGGAGG+AGG + chr1.3:58712552-58712571 None:intergenic 55.0%
! TCTGGGACATCGCAAAGGTG+TGG + chr1.3:58712558-58712577 None:intergenic 55.0%
!! TGCAGCAAGCAGCACTGGTT+GGG - chr1.3:58707664-58707683 MS.gene90358:intron 55.0%
!! TTGCAGCAAGCAGCACTGGT+TGG - chr1.3:58707663-58707682 MS.gene90358:intron 55.0%
CCAGCAGAGATGGCCATCAG+AGG + chr1.3:58712699-58712718 None:intergenic 60.0%
CCTCTGATGGCCATCTCTGC+TGG - chr1.3:58712696-58712715 MS.gene90358:CDS 60.0%
GAAATGCCCCGCAGTGTGAC+AGG - chr1.3:58710992-58711011 MS.gene90358:intron 60.0%
GAAGGGGCTAGGGTCAGTGT+AGG - chr1.3:58707528-58707547 MS.gene90358:intron 60.0%
TGTCCGAGAATCACGAGCCC+AGG - chr1.3:58712203-58712222 MS.gene90358:CDS 60.0%
! GCAAAGGTGTGGAGGAGGAG+CGG + chr1.3:58712547-58712566 None:intergenic 60.0%
! GCTCGTGCGAAAACCGGTTC+TGG - chr1.3:58706716-58706735 MS.gene90358:intron 60.0%
! GGGACATCGCAAAGGTGTGG+AGG + chr1.3:58712555-58712574 None:intergenic 60.0%
CGCGTTTACGGTTGCTCCGG+CGG + chr1.3:58706525-58706544 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 58706518 58712719 58706518 ID=MS.gene90358
chr1.3 mRNA 58706518 58712719 58706518 ID=MS.gene90358.t1;Parent=MS.gene90358
chr1.3 exon 58712381 58712719 58712381 ID=MS.gene90358.t1.exon1;Parent=MS.gene90358.t1
chr1.3 CDS 58712381 58712719 58712381 ID=cds.MS.gene90358.t1;Parent=MS.gene90358.t1
chr1.3 exon 58712192 58712281 58712192 ID=MS.gene90358.t1.exon2;Parent=MS.gene90358.t1
chr1.3 CDS 58712192 58712281 58712192 ID=cds.MS.gene90358.t1;Parent=MS.gene90358.t1
chr1.3 exon 58711440 58711568 58711440 ID=MS.gene90358.t1.exon3;Parent=MS.gene90358.t1
chr1.3 CDS 58711440 58711568 58711440 ID=cds.MS.gene90358.t1;Parent=MS.gene90358.t1
chr1.3 exon 58710667 58710767 58710667 ID=MS.gene90358.t1.exon4;Parent=MS.gene90358.t1
chr1.3 CDS 58710667 58710767 58710667 ID=cds.MS.gene90358.t1;Parent=MS.gene90358.t1
chr1.3 exon 58710132 58710246 58710132 ID=MS.gene90358.t1.exon5;Parent=MS.gene90358.t1
chr1.3 CDS 58710132 58710246 58710132 ID=cds.MS.gene90358.t1;Parent=MS.gene90358.t1
chr1.3 exon 58709722 58709853 58709722 ID=MS.gene90358.t1.exon6;Parent=MS.gene90358.t1
chr1.3 CDS 58709722 58709853 58709722 ID=cds.MS.gene90358.t1;Parent=MS.gene90358.t1
chr1.3 exon 58709044 58709109 58709044 ID=MS.gene90358.t1.exon7;Parent=MS.gene90358.t1
chr1.3 CDS 58709044 58709109 58709044 ID=cds.MS.gene90358.t1;Parent=MS.gene90358.t1
chr1.3 exon 58708440 58708619 58708440 ID=MS.gene90358.t1.exon8;Parent=MS.gene90358.t1
chr1.3 CDS 58708440 58708619 58708440 ID=cds.MS.gene90358.t1;Parent=MS.gene90358.t1
chr1.3 exon 58708162 58708257 58708162 ID=MS.gene90358.t1.exon9;Parent=MS.gene90358.t1
chr1.3 CDS 58708162 58708257 58708162 ID=cds.MS.gene90358.t1;Parent=MS.gene90358.t1
chr1.3 exon 58707846 58707983 58707846 ID=MS.gene90358.t1.exon10;Parent=MS.gene90358.t1
chr1.3 CDS 58707846 58707983 58707846 ID=cds.MS.gene90358.t1;Parent=MS.gene90358.t1
chr1.3 exon 58706981 58707063 58706981 ID=MS.gene90358.t1.exon11;Parent=MS.gene90358.t1
chr1.3 CDS 58706981 58707063 58706981 ID=cds.MS.gene90358.t1;Parent=MS.gene90358.t1
chr1.3 exon 58706837 58706874 58706837 ID=MS.gene90358.t1.exon12;Parent=MS.gene90358.t1
chr1.3 CDS 58706837 58706874 58706837 ID=cds.MS.gene90358.t1;Parent=MS.gene90358.t1
chr1.3 exon 58706518 58706726 58706518 ID=MS.gene90358.t1.exon13;Parent=MS.gene90358.t1
chr1.3 CDS 58706518 58706726 58706518 ID=cds.MS.gene90358.t1;Parent=MS.gene90358.t1
Gene Sequence

>MS.gene90358

ATGGCCGCCGGAGCAACCGTAAACGCGAACGAAACCACACGTGAGCACACAGAACAAGAAGTAGACGAGGACCGAAGCTTCGAAGAGCTAGGTTTAGACGCACGTCTCGTTCGCGCTTTACTGAAGAAACGAATTGAGAAACCTACTCCAATTCAGCACGTTGCGATTCCATTGATTCTTGAAGGTAAAGACGTCGTTGCTCGTGCGAAAACCGGTTCTGGCAAAACATTTGCTTATCTTCTTCCATTGCTTCAGAAACTGTTTACTCCTAATGTTGATAGGAAGAAACTAGCTCCTAATGTTTTCGTTCTTGCACCGAGTCGTGAACTATGTCAACAGGTGCATTCCCCTGTTTCAATTTCTATGCTCAATATCTTTTTTTACAGTTGTATATAAATGTATCTATTTCATGTTTTTTGTTGTTATTTGATTTTTCAGATATATGTGGAAGTGAAGTCACTCCTTGAGCTATGCAAAGTTCCGCTCAAAGTTGTGCAGTTGAATAGCAATATGCTTGCTACTGACTTGGTTCGTTATTCTCTTTATGATTTTCGTTGTTGCAATTTATGCCATGATTAGCACACCATTTTGGATTAGAAATGGTCAATACCGGGAGAACATTTTAAATCTTAAATGTAGATCGAATTAGGCCCTAGACTTAAATGTCTTGCAAAAAATATTCTAAAAATGGCTAATTTGACTCACTTTTAAATATCATAAAGACCAAATTGATATTTTGCATTTCTTAGTGAACTGCACATTTCGACTGTGTGCATCAATTAATTACTTGTTTCCTCATTTTCTTTGGAGTGAGCAAGATTTTTTGAGTAAACTCACATGTCATATATAAGTTTGTTTAGTTACATGGCTGTGATAGCTTCCTTCATTTTTATCTTCTTTCCCCTTTATAGTTCATGTAGTAGATTAGATAGTAAGACAAGAATAGAGTTGTATGTGAAACATGCGTAAATATTAGATTTAGAGGCGTATAAACATTTAATAGAAAGCTGGAAGGGGCTAGGGTCAGTGTAGGTATACAAGTGTCTCCAGCACTTGAGTAGGTTCATATATGCATGTCAAAACTATGTATTCTATTTGTTTTAGAATATGGTTTGATGATTGTTCTAATGGTCTAAAATTTGTGTTTGCAGCAAGCAGCACTGGTTGGGCCTCCCGATGTTTTAATCTCCACTCCTGCTTGCATAGCCAAGTGTTTGTCTAACTCAGTACTTCAGGCAGCATCCATTAATGGTTCTCTTGAAACTCTAGTTCTTGATGAGGTGAATCAGATAAAGCCTATTGTTTGTTTAGTTTAGTAAAGTATAATTGTTTATATTTGTATCATTTGATTGGTAAGACCAAAAATTAATGTTACTTCTTTTCATTAATAGTTACGCTACTTGATATCCAAATTATTGTTGGGTTTTATGTTTTTTATAGCTTTTAAATTTTTATAATGTTGGTTAATTTTAATTTTGGATTATCTATACTTTTGATTTCTCTAGTTTGAACTAAATGCGATTTTGATAACTCAAGTTTTTTTGAATCAACAACTTTTAGTTATCAAAATCGCGTTAAGTTCAATCACAATCCAGTTTGATTTTCTATCCAAAATGTTTGAGAGTGTATTATGAATTTTATGTCAAAACAAGGCCAAAAGTTTTGAACTTAAGAAATGTAATGAAGATTTTTAAGTGGAAGGCCAAAAGCAGAATTTGAGAGTTTTAAGTGGAAGGAAAATGACGGAGAGATTCAATTACTGACATTAAATTTTTTTAAGAGCTAAACTTCACTCAAATTATTTGGGGTACCTGAATCTTAGATTAGCTATAATAGAGGGACTAAAACTCTTTGATATATTAATGCCAATTCTAGTAGACATTGAACAGTTGTTAATTGTTCCAATTGTCTATGTTCCATGACCTGATCGGTATCCAAAATAATCTTTTCAGGCAGATCTTCTATTATCATATGGGTATGAAAATGACATAAAAGCTTTAACACCACACATACCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGGTGTGTCATTTGTCTTTCACCCTTTTTATTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCTTTCTGCTCAGATGCTTTGTAATATAATGTGGACGTGGATGCTACATCTTTCATTCCTCAATTTTTTAAATTTTTATTTAATAGTTTTAGCCCATCATTTCTTTATAGTTGATATTAAGAAATTAGAAACAGAAACAGGCATAATGATCTTTTTGCACTTTTGAAGGTTGTGTAATATACTTTCTATCGGAGAAGTGTTTATCTCTGTAAAATTGTACTGGCTTAGTGTATGAATGACTGTTATGTGATATTATTTTAGGATTAGTCTTTCGTAGAATCATGTCCATTTGCAATTGTTTCTAACAAAATGTTTTCTTTTGCAGTGACGATGTTGACAAACTAAAAAAGTTGATGTTACACAACCCCGTTATCTTGACTCTGCCTGAAGTGGGAAACCGTAAGGATGAGGTCATCCCTAAAAATGTTCAGCAATTCTGGGTAAGACATTCGATAAATTTTCTACACGTCTTCTTGATATTGTAATGTTAATTGCGGTGAAGTTTAAATCTTTATTTTACACAAAATATTGTATCATATCTTTCTTTGGAGACAAGAGACCGCCTTCTTTTCTATATTTGGGATCTGTCTTGTATCCGCCTTCTTTTCTATTATTTACCAATATACTTCTTTCATTTTTCGTTTTTTTTTCCTGGTTCAACATTTTTTCCTGTGTAGCTGATACACTTTTAACCATTTTCTTTGAATATTTTTATCAGATCTCTTGTCCTGCCAATGATAAGTTGCTCTACATCCTTGCGATGTTGAAGTTGGAGTTGGTCCAAAAGAAAGTTCTGATATTCACTAATAACATAGATACGAGTTTCAGATTGAAACTATTCTTGGAGAAGGTATGTGCCAGACATAAAATCATTGATAAGTTTTCACCTAACAGGTTTATGCACTCGGGATAGTTGGCCAATGGCATGATATTAAAGATTATATTACTAAGTGGTCAAGAATTTGAACTTGGTCATGCCCATTCTTTGTAATAAAAGTTAAATTTTATCACATGGTAGATGTAAAACCATTCAAGAACCTATATTTAACAGCTTGAGATTTTGGTATAGATGATTATTGACAGCATTTGCATCTTTTTGTATTCATCAATTAAATTTAATCCATCCAATCTTACATGTTATATCATACTACATGTCATACACTGATGTTGGCACATTTTTTTTAACAATTCACATTGATATCTATACTGCATCAGTTTAATGGGTGATAATCAATCAACATATTTTCTGTAATCTGAATTTTTTGTTGCCTTAAATATGTCTGCTCAAAATGATTTGGAGTTTTGCTCAACTCAGGAAAATCATGTTTCTTAGTTACAATTATTTCCTCAACCACACTGCTTCCACCAGTCTGAACATTTATAGTTTTGCACCTGAGGTTATTTTGTTTTCATCACTTCTTCCTCTCTCATTTTCTAATCTTTGCCCTCTCTATCATTCTAGTTTGGGATCAAGTCGGCTGTTTTAAATGCTGAATTGCCTCAGAATTCCCGTCTCCATATTCTTGAGGTATGTAATTTTATCCACTTCCGTCTTTCTTTTGGTATTATAGCTGCTAAGGTTTTTCGACTTAACCCAGTTCTATGACACGTTCCTACTAGTGAAATATTAGGAGAAATTTTTGGAGATTTTGGTTTGGAGAAACATATTCTATTTTCATTTTTATTTTTACTTGTAATTACCAAAATGTCATCATGTTTCTATTTTGCCAAGTTTTTTTATAGAATACTTTTTTGTTTCCATCAAAACCTCCAAGCATAATTAATTGAAAATTAGATGGCATTTTGCAAATTAAAATTGAAAAACATAAAATGTTTGAACAAACCAAATCCTTGTGTTCTTAAACGTGGATTTATTATTTTATTCATTCATTTATATATAGATATACGCTTGACATTTTATTACATGATTTTGATGAGCTTATTTTCATCAGGAATTCAATGCCGGCCTATTTGATTATCTAATTGCGACAGATATCAGCCAGTCAACGGAGAAGGATGAAGCACCTAAGGAAAATATTGTTGGATCAAAAAAGTCTAAAAAATATACAAAGCTAAAATTAGATTCTGAATTCGGAGTAGTAAGGGGAATTGACTTCAAAAATGTATACACGGTATGCATGCCAACTCTTATATCTCTTTCTGACATGTTTTTGTCTGGTGTGTACGTTTGAAATTATAATTAGAGTTGTATACTATGGTAGATTTCATCTTCTGATTCATATCTTTGTTTCATTGGGAGATTGCCATGTTCACTGAAATCATTTACTTACTGCTTTCTCTTGCTGATGAACAGGTTATAAACTTTGAAATGCCCCGCAGTGTGACAGGATACGTACATCGAATTGGACGTACGGGAAGAGCATACAGTTCTGGTACTTCTATCTCCTTGGTAAGTTTGTAAGACAAACAAAACAGACAAACAAAACTCCTCTTCTCCACCAAGTAAATTTTGCAAAGTATTGTGACTCTTTGATTTTTTGCTCTCTAATCCGTGTTGTTCTTTTGGTATATTATTGACATCCAAGCTACATTACCTTGGCATTTAGATTTTCCTTGTTTCCTTGTAGGTTTCTACAGATGAGATGGATACCTTTGAAGAAGTAAGATCTTTTGTTGGGGACAATGAAAACAATGGCTCAAACTCAATCACAGAGTTTCCCTTACTCACCAAGAGTGCAGTTGAATCTTTACGGTATAGGGCTGAGGTGAGTTATATTTCCCCATACTCTCAACAAAAATATCATAGATGCATCAACCAATGAGAGCTTTGAATGATTTTTTTGTGAAACAAAAAACTGATTATGAATCCTTTAGTTTAAAAATGAAATTATCTCATCTTATATTATGTTTCAATACTTTTAAGCCTCATACGGTTTCCATGACAGGATACAGATAAGAATAGGAACGGGTACAAGTTTAATATGGATCTTTTCCCATTCCTATCTAATGCGCACACAGTATTATGTCATTGTTAACCTATTTTGTGTTTGAGGTGGATTAGACAATGATACCCTATTCCTATCTAATGCACACACATTATTATGTCACTGTTATCCTATTTTGTTTTTGAGGTGGGGACTAGACAATGATGATACTATATGATAAAAAAAAAATAGGAACGGTACAAGTTTAATATGGATCTTTTCCTATTCCTATCTAATGCACACACAGCATTATGTCATTGTTATCCTATCGTGTCACATTGAATTAACAAACATTGGATTATTATAGGGTAGCAAAATAACCAATTGATCTATCTTCTCTCATTCTAGCTACCAAACAGAGCCTTAAAAGTTTGTGTTTAGTCAAACAATAAACATTATTTTTATGATTAAATTCCATGTCGTTCCTGTCTCAGTTAGACTTGCGAATATTTAGATTTACTAGCATCTTCCATGTCTTTTCAGTTATTTTTTTAATATATAGATGATATTTTGGCACTCTAGCTGCTTTGTAAACTATATTGATGATTGACATTGTTTTGCAGGATGTTGCAAAGAGTGTAACTAAAATTGCTGTCCGAGAATCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGCAAAGTAAGTCCCTGGTATTGAATGTGTTATGCTCGAGATTTGTAACTCTGATCTTAACCTTTTTTCATCTTCTAATCCATTCCTCCACACCTTTGTTTTTCCATTTTAGGCTGACGGCTCACTTTCAGACTAATCCAAGAGACTTAGGTAATGTTATTGGTTCATTTATTGTTACTGTATGTAAATTTGGCATTTATTTTTGCCTTTTTCATGTTTGAAGAAGTTAAACTTTAACCTTTGAAATTTTATTTGAGCAGATCTATTGAAACATGACAAAGTTTTGAGCAAAACCGCTCCTCCTCCACACCTTTGCGATGTCCCAGATTACCTAATAGACAAAACAACAAAAGAGGCAAGGGCAATGGTTAAGCTTACCAGAGATGCAATGGGAAATAATAATCACCGACGGGGATCCAAGAGAAAATCAAGAAAAGGCAGTGACCCTCTGATGGCCATCTCTGCTGGG
Protein sequence

>MS.gene90358.t1

MAAGATVNANETTREHTEQEVDEDRSFEELGLDARLVRALLKKRIEKPTPIQHVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFTPNVDRKKLAPNVFVLAPSRELCQQIYVEVKSLLELCKVPLKVVQLNSNMLATDLQAALVGPPDVLISTPACIAKCLSNSVLQAASINGSLETLVLDEADLLLSYGYENDIKALTPHIPRSCQCLLMSATSSDDVDKLKKLMLHNPVILTLPEVGNRKDEVIPKNVQQFWISCPANDKLLYILAMLKLELVQKKVLIFTNNIDTSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDISQSTEKDEAPKENIVGSKKSKKYTKLKLDSEFGVVRGIDFKNVYTVINFEMPRSVTGYVHRIGRTGRAYSSGTSISLVSTDEMDTFEEVRSFVGDNENNGSNSITEFPLLTKSAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSAKLTAHFQTNPRDLDLLKHDKVLSKTAPPPHLCDVPDYLIDKTTKEARAMVKLTRDAMGNNNHRRGSKRKSRKGSDPLMAISAG