Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007738.t1 | RHN60649.1 | 86.6 | 677 | 65 | 3 | 61 | 727 | 86 | 746 | 0.00E+00 | 1147.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007738.t1 | Q42572 | 66.9 | 622 | 190 | 2 | 106 | 727 | 158 | 763 | 6.7e-248 | 858.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007738.t1 | G7JNA4 | 86.6 | 677 | 65 | 3 | 61 | 727 | 46 | 706 | 0.0e+00 | 1147.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04079 | MS.gene007738 | PPI |
| MS.gene007738 | MS.gene90358 | PPI |
| MS.gene005245 | MS.gene007738 | PPI |
| MS.gene042871 | MS.gene007738 | PPI |
| MS.gene007738 | MS.gene066960 | PPI |
| MS.gene08109 | MS.gene007738 | PPI |
| MS.gene21089 | MS.gene007738 | PPI |
| MS.gene007738 | MS.gene49838 | PPI |
| MS.gene87898 | MS.gene007738 | PPI |
| MS.gene005383 | MS.gene007738 | PPI |
| MS.gene007738 | MS.gene90359 | PPI |
| MS.gene007738 | MS.gene55626 | PPI |
| MS.gene04418 | MS.gene007738 | PPI |
| MS.gene007738 | MS.gene071460 | PPI |
| MS.gene82109 | MS.gene007738 | PPI |
| MS.gene05640 | MS.gene007738 | PPI |
| MS.gene007738 | MS.gene47284 | PPI |
| MS.gene007738 | MS.gene056051 | PPI |
| MS.gene007738 | MS.gene071456 | PPI |
| MS.gene20956 | MS.gene007738 | PPI |
| MS.gene79799 | MS.gene007738 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007738.t1 | MTR_4g057340 | 85.942 | 754 | 71 | 5 | 1 | 740 | 1 | 733 | 0.0 | 1276 |
| MS.gene007738.t1 | MTR_4g057345 | 83.060 | 732 | 105 | 3 | 1 | 732 | 43 | 755 | 0.0 | 1214 |
| MS.gene007738.t1 | MTR_8g468400 | 67.395 | 641 | 190 | 4 | 92 | 732 | 72 | 693 | 0.0 | 892 |
| MS.gene007738.t1 | MTR_7g082860 | 38.258 | 643 | 358 | 10 | 109 | 730 | 765 | 1389 | 7.01e-146 | 462 |
| MS.gene007738.t1 | MTR_7g082860 | 36.672 | 649 | 347 | 12 | 109 | 730 | 765 | 1376 | 1.93e-132 | 426 |
| MS.gene007738.t1 | MTR_7g082860 | 37.545 | 554 | 310 | 8 | 109 | 642 | 765 | 1302 | 8.19e-120 | 390 |
| MS.gene007738.t1 | MTR_7g082860 | 37.524 | 525 | 292 | 8 | 109 | 613 | 765 | 1273 | 4.47e-110 | 363 |
| MS.gene007738.t1 | MTR_7g082860 | 35.539 | 408 | 238 | 5 | 109 | 507 | 765 | 1156 | 6.85e-76 | 266 |
| MS.gene007738.t1 | MTR_2g038030 | 27.604 | 384 | 232 | 15 | 370 | 722 | 214 | 582 | 2.90e-30 | 128 |
| MS.gene007738.t1 | MTR_2g038030 | 27.604 | 384 | 232 | 15 | 370 | 722 | 214 | 582 | 2.92e-30 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007738.t1 | AT1G08130 | 61.456 | 742 | 250 | 6 | 7 | 735 | 53 | 771 | 0.0 | 930 |
| MS.gene007738.t1 | AT1G49250 | 56.716 | 670 | 241 | 5 | 64 | 732 | 14 | 635 | 0.0 | 748 |
| MS.gene007738.t1 | AT1G66730 | 36.785 | 647 | 369 | 10 | 106 | 730 | 748 | 1376 | 9.60e-134 | 429 |
| MS.gene007738.t1 | AT5G57160 | 25.620 | 484 | 281 | 22 | 275 | 722 | 145 | 585 | 7.44e-22 | 102 |
| MS.gene007738.t1 | AT5G57160 | 29.502 | 261 | 143 | 11 | 493 | 722 | 1 | 251 | 6.02e-13 | 73.2 |
Find 154 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCGAGTTCGGTTGTTTAC+TGG | 0.166678 | 4.4:-45928998 | MS.gene007738:CDS |
| TCTAAAGGAGACTTAATTTC+TGG | 0.193788 | 4.4:+45926851 | None:intergenic |
| TTTGATTTGTTGCACCTTAA+TGG | 0.216206 | 4.4:-45924736 | MS.gene007738:CDS |
| GGAGTAAAATTACACTTCTT+TGG | 0.243294 | 4.4:+45926619 | None:intergenic |
| AAAATTGCGCCGGCGTATAA+AGG | 0.243932 | 4.4:-45928810 | MS.gene007738:CDS |
| TAGAGTTTATAACGGTTTCT+AGG | 0.250678 | 4.4:+45929180 | None:intergenic |
| GATGAAGATGAAGATGATTA+AGG | 0.251468 | 4.4:-45922247 | None:intergenic |
| ATCTTCATGAACGGTTTCTT+TGG | 0.252795 | 4.4:+45929121 | None:intergenic |
| TCCTTAGATTTGGTACCTTT+TGG | 0.253508 | 4.4:-45923441 | MS.gene007738:CDS |
| ATTGAGACAGGTACATTTCT+TGG | 0.270985 | 4.4:-45926402 | MS.gene007738:intron |
| ACATATTAAGTCTCAGTATA+AGG | 0.304378 | 4.4:-45928718 | MS.gene007738:CDS |
| AGCATGATGCTTTGACTATT+AGG | 0.317896 | 4.4:-45928159 | MS.gene007738:CDS |
| CACAATCAGTTGCAGCAAAA+AGG | 0.329925 | 4.4:+45927068 | None:intergenic |
| CCCTCTGCAGCTCGGTAGAC+AGG | 0.339280 | 4.4:+45922669 | None:intergenic |
| TATAAATGTCCGCAGGAATC+TGG | 0.341200 | 4.4:-45927133 | MS.gene007738:intron |
| TGAAGGTGGTGGTTTCTTCT+TGG | 0.350827 | 4.4:+45929262 | None:intergenic |
| TTTAGGGGACTCCTTAGATT+TGG | 0.360577 | 4.4:-45923451 | MS.gene007738:CDS |
| AGAGCGAGGGACCTTTGGTT+TGG | 0.365107 | 4.4:+45923004 | None:intergenic |
| ACAGAAAATCCGTCCTTTCC+AGG | 0.366435 | 4.4:-45924935 | MS.gene007738:intron |
| TCAAATTCTAAATAAGTTCC+AGG | 0.368042 | 4.4:-45926548 | MS.gene007738:CDS |
| TAATGGCCACGATCTTCTTC+AGG | 0.369756 | 4.4:-45924719 | MS.gene007738:CDS |
| ACCAAAAGGTACCAAATCTA+AGG | 0.374119 | 4.4:+45923440 | None:intergenic |
| TCTTCATGAACGGTTTCTTT+GGG | 0.376930 | 4.4:+45929122 | None:intergenic |
| GAGCGAGGGACCTTTGGTTT+GGG | 0.389083 | 4.4:+45923005 | None:intergenic |
| ATGTTATTGCTGCAGTTTCA+AGG | 0.391497 | 4.4:-45926319 | MS.gene007738:intron |
| TCCGAGTTCGGTTGTTTACT+GGG | 0.394637 | 4.4:-45928997 | MS.gene007738:CDS |
| TTCCAGACAAAATTGCGAAT+TGG | 0.396547 | 4.4:-45926947 | MS.gene007738:intron |
| GAAGAAGATCGTGGCCATTA+AGG | 0.398206 | 4.4:+45924722 | None:intergenic |
| TCAGACGAAGAGGCCTGTTC+AGG | 0.402579 | 4.4:+45922443 | None:intergenic |
| AGGTGATGCTTCGATCATTA+AGG | 0.404038 | 4.4:-45928772 | MS.gene007738:CDS |
| GGCGTATAAAGGGTTAGAAT+TGG | 0.404818 | 4.4:-45928799 | MS.gene007738:CDS |
| GCATCATGCTTCCGCATCAT+AGG | 0.406559 | 4.4:+45928172 | None:intergenic |
| GCCTGACAAAACTCCTGAAC+AGG | 0.413938 | 4.4:-45922456 | MS.gene007738:CDS |
| ATATATAATCCGTTTGCTAC+AGG | 0.417845 | 4.4:-45927038 | MS.gene007738:intron |
| TTTGACAGCATAGGCCCAAC+TGG | 0.418815 | 4.4:+45926589 | None:intergenic |
| TTATGTCTTGTAGGATTGTA+TGG | 0.420971 | 4.4:-45923232 | MS.gene007738:intron |
| CGGGATAGTCGCTGAATTGA+AGG | 0.423338 | 4.4:-45929060 | MS.gene007738:CDS |
| ATGAAGATGAAGATGATTAA+GGG | 0.424155 | 4.4:-45922246 | None:intergenic |
| TGGAACTTATTTAGAATTTG+AGG | 0.427355 | 4.4:+45926550 | None:intergenic |
| AAATTGCGCCGGCGTATAAA+GGG | 0.429840 | 4.4:-45928809 | MS.gene007738:CDS |
| CAGTTGTTTGATCGCTTTGA+GGG | 0.430932 | 4.4:+45923942 | None:intergenic |
| TTACTCCTGGCATTCCAGTT+GGG | 0.430985 | 4.4:-45926603 | MS.gene007738:CDS |
| TTTGTGTGGGGATGAAGAAG+GGG | 0.431404 | 4.4:+45929205 | None:intergenic |
| CAAACTCTCTTGGCTGCATT+AGG | 0.435584 | 4.4:-45926914 | MS.gene007738:CDS |
| AATTGTTTCTGCACTCCTTA+CGG | 0.436971 | 4.4:-45926659 | MS.gene007738:CDS |
| TTGTCCAAGGCGGAGGGTGG+TGG | 0.440778 | 4.4:+45929314 | None:intergenic |
| CACTCCTTACGGATGGTGTA+TGG | 0.441408 | 4.4:-45926648 | MS.gene007738:CDS |
| CCAGTTGTTTGATCGCTTTG+AGG | 0.442704 | 4.4:+45923941 | None:intergenic |
| CACACCTGATGATCTTGTTC+CGG | 0.447987 | 4.4:-45928853 | MS.gene007738:CDS |
| TTGTGTGGGGATGAAGAAGG+GGG | 0.448029 | 4.4:+45929206 | None:intergenic |
| TGTAGCAAAGAGTGACATAA+AGG | 0.457009 | 4.4:-45924779 | MS.gene007738:CDS |
| CAGGTACATTTCTTGGAGAA+TGG | 0.459633 | 4.4:-45926395 | MS.gene007738:CDS |
| GGCGAATTTCGATCCGAGTT+CGG | 0.461619 | 4.4:-45929009 | MS.gene007738:CDS |
| TTTACTCCTGGCATTCCAGT+TGG | 0.462876 | 4.4:-45926604 | MS.gene007738:CDS |
| AGAGTTTATAACGGTTTCTA+GGG | 0.463494 | 4.4:+45929181 | None:intergenic |
| CGTTTCTTGGAAGATGATGA+AGG | 0.464014 | 4.4:+45929245 | None:intergenic |
| TTTCAAAGTATTGTTAAGCT+AGG | 0.468125 | 4.4:-45923169 | MS.gene007738:intron |
| ACACTTCATCTTCTTCCAAC+GGG | 0.469356 | 4.4:-45929079 | MS.gene007738:CDS |
| TTCGCAGAAAGATAAACAAC+CGG | 0.471458 | 4.4:+45928834 | None:intergenic |
| TTCCGCGTTTCATTCGAGTT+CGG | 0.473434 | 4.4:-45922478 | MS.gene007738:CDS |
| TTTCGATGTTGTTGTGGTTG+CGG | 0.473844 | 4.4:-45928679 | MS.gene007738:intron |
| AAAGGGTTAGAATTGGGAAT+AGG | 0.474887 | 4.4:-45928792 | MS.gene007738:CDS |
| GGGCAAAGTAGATCCCAATA+AGG | 0.475808 | 4.4:-45922649 | MS.gene007738:intron |
| CACATTTCATCTTATTGCAA+AGG | 0.477160 | 4.4:-45928126 | MS.gene007738:CDS |
| GCCGGTTTCTTCTTCAGCTC+CGG | 0.477290 | 4.4:+45929029 | None:intergenic |
| GCGTATAAAGGGTTAGAATT+GGG | 0.480031 | 4.4:-45928798 | MS.gene007738:CDS |
| GGTAGACAGGGCTAATAGTC+AGG | 0.480377 | 4.4:+45922682 | None:intergenic |
| CCTCAAAGCGATCAAACAAC+TGG | 0.481179 | 4.4:-45923941 | MS.gene007738:CDS |
| CATGAGTTTGTCCAAGGCGG+AGG | 0.482631 | 4.4:+45929307 | None:intergenic |
| AATCAATCAATCCTGATGTC+TGG | 0.482865 | 4.4:-45922887 | MS.gene007738:CDS |
| TTTACAGTAGAAATTCTAAA+CGG | 0.485577 | 4.4:-45926361 | MS.gene007738:CDS |
| AGAACCACCACCCTCCGCCT+TGG | 0.490916 | 4.4:-45929318 | MS.gene007738:CDS |
| ATAGGCCCAACTGGAATGCC+AGG | 0.495371 | 4.4:+45926598 | None:intergenic |
| TCGCTTTGAGGGTTCATATG+TGG | 0.501910 | 4.4:+45923953 | None:intergenic |
| TTTGGTGCTTTCCATGGTCG+TGG | 0.502757 | 4.4:-45923423 | MS.gene007738:CDS |
| GATTAGCTTACCTCTTCTAA+AGG | 0.505080 | 4.4:+45926836 | None:intergenic |
| GGGTTCTTGAACGGTTTCTA+CGG | 0.505149 | 4.4:+45929142 | None:intergenic |
| AGGTGGTGGTTTCTTCTTGG+AGG | 0.505907 | 4.4:+45929265 | None:intergenic |
| GGTTTCTTTGGGTTCTTGAA+CGG | 0.508245 | 4.4:+45929133 | None:intergenic |
| TAGAATTTGAGGTACACTCT+TGG | 0.508267 | 4.4:+45926561 | None:intergenic |
| GATTTAGGTTTAGTTGCGAA+AGG | 0.509551 | 4.4:-45928211 | MS.gene007738:CDS |
| GTTGTTATTAGAGTTTATAA+CGG | 0.512576 | 4.4:+45929172 | None:intergenic |
| ATGCAATAAGTTCACAATCA+AGG | 0.513284 | 4.4:+45924971 | None:intergenic |
| AGCAAACGGATTATATATAG+AGG | 0.513938 | 4.4:+45927043 | None:intergenic |
| CGCTTGCTGAGGCGTGTGGA+AGG | 0.513977 | 4.4:-45928749 | MS.gene007738:CDS |
| CCCTGTCTACCGAGCTGCAG+AGG | 0.514196 | 4.4:-45922670 | MS.gene007738:CDS |
| ACAGGCCTCTTCGTCTGAGC+AGG | 0.514540 | 4.4:-45922438 | MS.gene007738:intron |
| TCCAGATTCTTCCTCAAAAG+AGG | 0.515268 | 4.4:+45924398 | None:intergenic |
| TTTCAGGCATATTATAAATG+TGG | 0.517894 | 4.4:-45922912 | MS.gene007738:intron |
| ACAACCGGAACAAGATCATC+AGG | 0.518789 | 4.4:+45928849 | None:intergenic |
| CTAGCTTCAAACCAGACATC+AGG | 0.519537 | 4.4:+45922876 | None:intergenic |
| CCTGTCTACCGAGCTGCAGA+GGG | 0.526945 | 4.4:-45922669 | MS.gene007738:CDS |
| GAAACTGCAGCAATAACATC+AGG | 0.528225 | 4.4:+45926323 | None:intergenic |
| ATAGAAGGTTTACCTCTCTA+CGG | 0.528755 | 4.4:+45924683 | None:intergenic |
| TCCGGAGCTGAAGAAGAAAC+CGG | 0.529378 | 4.4:-45929030 | MS.gene007738:CDS |
| ATATGCTGAGCAAACTCTCT+TGG | 0.531309 | 4.4:-45926924 | MS.gene007738:CDS |
| CGACCATGGAAAGCACCAAA+AGG | 0.540888 | 4.4:+45923426 | None:intergenic |
| AACACTTCATCTTCTTCCAA+CGG | 0.541384 | 4.4:-45929080 | MS.gene007738:CDS |
| GGAGACTTAATTTCTGGAGG+CGG | 0.541587 | 4.4:+45926857 | None:intergenic |
| TTGGAAGATGATGAAGGTGG+TGG | 0.542860 | 4.4:+45929251 | None:intergenic |
| TGGGAATCACTTTAGATCGA+AGG | 0.543842 | 4.4:+45923024 | None:intergenic |
| GAGACTTAATTTCTGGAGGC+GGG | 0.545399 | 4.4:+45926858 | None:intergenic |
| AGAAATTCTAAACGGAACAC+TGG | 0.546855 | 4.4:-45926353 | MS.gene007738:CDS |
| TGGAAGAAGATGAAGTGTTA+CGG | 0.547658 | 4.4:+45929084 | None:intergenic |
| TCCCAGTAAACAACCGAACT+CGG | 0.547749 | 4.4:+45928996 | None:intergenic |
| AATTAAGTCTCCTTTAGAAG+AGG | 0.555197 | 4.4:-45926846 | MS.gene007738:intron |
| GGCTATACTTTGCAGTTTAG+GGG | 0.555550 | 4.4:-45923466 | MS.gene007738:intron |
| GAATTGCAACCTGTAGCAAA+CGG | 0.557122 | 4.4:+45927029 | None:intergenic |
| ATTTAGGTTTAGTTGCGAAA+GGG | 0.560399 | 4.4:-45928210 | MS.gene007738:CDS |
| CACAAATTACCTGGAAAGGA+CGG | 0.561416 | 4.4:+45924926 | None:intergenic |
| ACAGCACAAATTACCTGGAA+AGG | 0.561955 | 4.4:+45924922 | None:intergenic |
| TGGTGGTTTCTTCTTGGAGG+CGG | 0.565108 | 4.4:+45929268 | None:intergenic |
| CCTCTGCAGCTCGGTAGACA+GGG | 0.566603 | 4.4:+45922670 | None:intergenic |
| TGATGCTTTGACTATTAGGA+AGG | 0.566610 | 4.4:-45928155 | MS.gene007738:CDS |
| CATGGTCGTGGTAAACGCAC+AGG | 0.567033 | 4.4:-45923411 | MS.gene007738:intron |
| GCTCGATGGATCTTCATGAA+CGG | 0.568384 | 4.4:+45929112 | None:intergenic |
| GTTTCTGCACTCCTTACGGA+TGG | 0.569101 | 4.4:-45926655 | MS.gene007738:CDS |
| AAAGGAGACTTAATTTCTGG+AGG | 0.572972 | 4.4:+45926854 | None:intergenic |
| TCGACAAAGCTATTGATGCA+AGG | 0.577282 | 4.4:-45924317 | MS.gene007738:intron |
| CAATTCAGCGACTATCCCGT+TGG | 0.580013 | 4.4:+45929064 | None:intergenic |
| AACTACATCAAATGATGTTG+AGG | 0.581234 | 4.4:-45924355 | MS.gene007738:CDS |
| ACATTTCTTGGAGAATGGCT+CGG | 0.583005 | 4.4:-45926390 | MS.gene007738:CDS |
| AATTCTAACCCTTTATACGC+CGG | 0.588190 | 4.4:+45928801 | None:intergenic |
| TTCTGCGAATAAAATTGCGC+CGG | 0.591417 | 4.4:-45928820 | MS.gene007738:CDS |
| CTACTTTGCCCTCTGCAGCT+CGG | 0.591913 | 4.4:+45922661 | None:intergenic |
| ATACGACGGAGAGCGTGCTC+AGG | 0.594615 | 4.4:-45926500 | MS.gene007738:intron |
| GATCATTAAGGCGCTTGCTG+AGG | 0.595381 | 4.4:-45928760 | MS.gene007738:CDS |
| GAAATTCTAAACGGAACACT+GGG | 0.599474 | 4.4:-45926352 | MS.gene007738:CDS |
| GTGTTACGGATCTTGCTCGA+TGG | 0.600160 | 4.4:+45929098 | None:intergenic |
| CAAATTCTAAATAAGTTCCA+GGG | 0.605370 | 4.4:-45926547 | MS.gene007738:CDS |
| GTTTCCATACACCATCCGTA+AGG | 0.605466 | 4.4:+45926644 | None:intergenic |
| TCCGTCGTATTTGTACTCAC+AGG | 0.607762 | 4.4:+45926513 | None:intergenic |
| AATCACTTTAGATCGAAGGC+TGG | 0.612787 | 4.4:+45923028 | None:intergenic |
| TAGTTGATGTCGCAAACTGA+AGG | 0.612933 | 4.4:+45924373 | None:intergenic |
| AAGGCGCTTGCTGAGGCGTG+TGG | 0.616663 | 4.4:-45928753 | MS.gene007738:CDS |
| AGTTTGTCCAAGGCGGAGGG+TGG | 0.619661 | 4.4:+45929311 | None:intergenic |
| ATGAGTTTGTCCAAGGCGGA+GGG | 0.621134 | 4.4:+45929308 | None:intergenic |
| TAAAGTGATTCCCAAACCAA+AGG | 0.623388 | 4.4:-45923015 | MS.gene007738:intron |
| GTCGGACATGAGTTTGTCCA+AGG | 0.623402 | 4.4:+45929301 | None:intergenic |
| ATTTACCTGCTCAGACGAAG+AGG | 0.626941 | 4.4:+45922433 | None:intergenic |
| GAACTCGGATCGAAATTCGC+CGG | 0.629211 | 4.4:+45929011 | None:intergenic |
| AAACCTTAAAATCCGTAGAG+AGG | 0.630636 | 4.4:-45924695 | MS.gene007738:intron |
| GGAGGCGGCAGAGCGTGCGT+CGG | 0.632501 | 4.4:+45929283 | None:intergenic |
| GATTTGATTAGCAAAGAGAG+TGG | 0.633149 | 4.4:-45928930 | MS.gene007738:CDS |
| CACAGGTAAACTCTACACCC+TGG | 0.639310 | 4.4:+45926530 | None:intergenic |
| GCATCATAGGCTGTGAAGAG+CGG | 0.646018 | 4.4:+45928185 | None:intergenic |
| CTGTGCGTTTACCACGACCA+TGG | 0.653586 | 4.4:+45923412 | None:intergenic |
| CGGAACAAGATCATCAGGTG+TGG | 0.658948 | 4.4:+45928854 | None:intergenic |
| TGTCTGGTTTGAAGCTAGTG+AGG | 0.673944 | 4.4:-45922871 | MS.gene007738:intron |
| ACCTGTGAGTACAAATACGA+CGG | 0.675845 | 4.4:-45926514 | MS.gene007738:CDS |
| GCTCTTCACAGCCTATGATG+CGG | 0.699296 | 4.4:-45928183 | MS.gene007738:CDS |
| GGACATGAGTTTGTCCAAGG+CGG | 0.717389 | 4.4:+45929304 | None:intergenic |
| GGCCGAACTCGAATGAAACG+CGG | 0.718262 | 4.4:+45922476 | None:intergenic |
| TTCTTGGAAGATGATGAAGG+TGG | 0.764510 | 4.4:+45929248 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 45922249 | 45929348 | 45922249 | ID=MS.gene007738 |
| chr4.4 | mRNA | 45922249 | 45929348 | 45922249 | ID=MS.gene007738.t1;Parent=MS.gene007738 |
| chr4.4 | exon | 45928680 | 45929348 | 45928680 | ID=MS.gene007738.t1.exon1;Parent=MS.gene007738.t1 |
| chr4.4 | CDS | 45928680 | 45929348 | 45928680 | ID=cds.MS.gene007738.t1;Parent=MS.gene007738.t1 |
| chr4.4 | exon | 45928117 | 45928242 | 45928117 | ID=MS.gene007738.t1.exon2;Parent=MS.gene007738.t1 |
| chr4.4 | CDS | 45928117 | 45928242 | 45928117 | ID=cds.MS.gene007738.t1;Parent=MS.gene007738.t1 |
| chr4.4 | exon | 45927039 | 45927140 | 45927039 | ID=MS.gene007738.t1.exon3;Parent=MS.gene007738.t1 |
| chr4.4 | CDS | 45927039 | 45927140 | 45927039 | ID=cds.MS.gene007738.t1;Parent=MS.gene007738.t1 |
| chr4.4 | exon | 45926847 | 45926963 | 45926847 | ID=MS.gene007738.t1.exon4;Parent=MS.gene007738.t1 |
| chr4.4 | CDS | 45926847 | 45926963 | 45926847 | ID=cds.MS.gene007738.t1;Parent=MS.gene007738.t1 |
| chr4.4 | exon | 45926501 | 45926731 | 45926501 | ID=MS.gene007738.t1.exon5;Parent=MS.gene007738.t1 |
| chr4.4 | CDS | 45926501 | 45926731 | 45926501 | ID=cds.MS.gene007738.t1;Parent=MS.gene007738.t1 |
| chr4.4 | exon | 45926320 | 45926414 | 45926320 | ID=MS.gene007738.t1.exon6;Parent=MS.gene007738.t1 |
| chr4.4 | CDS | 45926320 | 45926414 | 45926320 | ID=cds.MS.gene007738.t1;Parent=MS.gene007738.t1 |
| chr4.4 | exon | 45924936 | 45925023 | 45924936 | ID=MS.gene007738.t1.exon7;Parent=MS.gene007738.t1 |
| chr4.4 | CDS | 45924936 | 45925023 | 45924936 | ID=cds.MS.gene007738.t1;Parent=MS.gene007738.t1 |
| chr4.4 | exon | 45924696 | 45924827 | 45924696 | ID=MS.gene007738.t1.exon8;Parent=MS.gene007738.t1 |
| chr4.4 | CDS | 45924696 | 45924827 | 45924696 | ID=cds.MS.gene007738.t1;Parent=MS.gene007738.t1 |
| chr4.4 | exon | 45924318 | 45924430 | 45924318 | ID=MS.gene007738.t1.exon9;Parent=MS.gene007738.t1 |
| chr4.4 | CDS | 45924318 | 45924430 | 45924318 | ID=cds.MS.gene007738.t1;Parent=MS.gene007738.t1 |
| chr4.4 | exon | 45923912 | 45924013 | 45923912 | ID=MS.gene007738.t1.exon10;Parent=MS.gene007738.t1 |
| chr4.4 | CDS | 45923912 | 45924013 | 45923912 | ID=cds.MS.gene007738.t1;Parent=MS.gene007738.t1 |
| chr4.4 | exon | 45923412 | 45923473 | 45923412 | ID=MS.gene007738.t1.exon11;Parent=MS.gene007738.t1 |
| chr4.4 | CDS | 45923412 | 45923473 | 45923412 | ID=cds.MS.gene007738.t1;Parent=MS.gene007738.t1 |
| chr4.4 | exon | 45923170 | 45923241 | 45923170 | ID=MS.gene007738.t1.exon12;Parent=MS.gene007738.t1 |
| chr4.4 | CDS | 45923170 | 45923241 | 45923170 | ID=cds.MS.gene007738.t1;Parent=MS.gene007738.t1 |
| chr4.4 | exon | 45923016 | 45923089 | 45923016 | ID=MS.gene007738.t1.exon13;Parent=MS.gene007738.t1 |
| chr4.4 | CDS | 45923016 | 45923089 | 45923016 | ID=cds.MS.gene007738.t1;Parent=MS.gene007738.t1 |
| chr4.4 | exon | 45922872 | 45922928 | 45922872 | ID=MS.gene007738.t1.exon14;Parent=MS.gene007738.t1 |
| chr4.4 | CDS | 45922872 | 45922928 | 45922872 | ID=cds.MS.gene007738.t1;Parent=MS.gene007738.t1 |
| chr4.4 | exon | 45922650 | 45922727 | 45922650 | ID=MS.gene007738.t1.exon15;Parent=MS.gene007738.t1 |
| chr4.4 | CDS | 45922650 | 45922727 | 45922650 | ID=cds.MS.gene007738.t1;Parent=MS.gene007738.t1 |
| chr4.4 | exon | 45922439 | 45922516 | 45922439 | ID=MS.gene007738.t1.exon16;Parent=MS.gene007738.t1 |
| chr4.4 | CDS | 45922439 | 45922516 | 45922439 | ID=cds.MS.gene007738.t1;Parent=MS.gene007738.t1 |
| chr4.4 | exon | 45922249 | 45922275 | 45922249 | ID=MS.gene007738.t1.exon17;Parent=MS.gene007738.t1 |
| chr4.4 | CDS | 45922249 | 45922275 | 45922249 | ID=cds.MS.gene007738.t1;Parent=MS.gene007738.t1 |
| Gene Sequence |
| Protein sequence |
