Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008354.t1 | XP_003600618.2 | 93.6 | 219 | 9 | 3 | 2 | 217 | 1 | 217 | 1.80E-104 | 388.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008354.t1 | C6TCJ2 | 71.9 | 203 | 48 | 2 | 2 | 203 | 1 | 195 | 9.9e-75 | 281.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008354.t1 | G7J7X5 | 93.6 | 219 | 9 | 3 | 2 | 217 | 1 | 217 | 1.3e-104 | 388.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008354 | MS.gene81771 | PPI |
| MS.gene008354 | MS.gene056922 | PPI |
| MS.gene008354 | MS.gene056924 | PPI |
| MS.gene008354 | MS.gene81770 | PPI |
| MS.gene008354 | MS.gene034838 | PPI |
| MS.gene008354 | MS.gene056925 | PPI |
| MS.gene008354 | MS.gene034839 | PPI |
| MS.gene008354 | MS.gene056920 | PPI |
| MS.gene008354 | MS.gene81774 | PPI |
| MS.gene008354 | MS.gene065728 | PPI |
| MS.gene008354 | MS.gene034840 | PPI |
| MS.gene008354 | MS.gene065729 | PPI |
| MS.gene008354 | MS.gene056923 | PPI |
| MS.gene008354 | MS.gene034836 | PPI |
| MS.gene008354 | MS.gene065724 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008354.t1 | MTR_3g064310 | 93.607 | 219 | 9 | 3 | 2 | 217 | 1 | 217 | 2.39e-143 | 399 |
| MS.gene008354.t1 | MTR_5g076480 | 61.574 | 216 | 75 | 4 | 3 | 217 | 1 | 209 | 1.81e-89 | 262 |
| MS.gene008354.t1 | MTR_0160s0040 | 33.333 | 171 | 112 | 2 | 31 | 200 | 7 | 176 | 4.26e-35 | 123 |
| MS.gene008354.t1 | MTR_2g026530 | 31.098 | 164 | 103 | 3 | 43 | 196 | 8 | 171 | 2.69e-19 | 82.0 |
| MS.gene008354.t1 | MTR_2g026530 | 31.098 | 164 | 103 | 3 | 43 | 196 | 28 | 191 | 2.91e-19 | 82.4 |
| MS.gene008354.t1 | MTR_0004s0210 | 29.452 | 146 | 93 | 4 | 44 | 184 | 6 | 146 | 4.73e-15 | 70.5 |
| MS.gene008354.t1 | MTR_0693s0030 | 25.517 | 145 | 91 | 2 | 62 | 196 | 36 | 173 | 3.70e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008354.t1 | AT1G17200 | 65.625 | 160 | 53 | 1 | 43 | 200 | 30 | 189 | 2.97e-73 | 221 |
| MS.gene008354.t1 | AT3G14380 | 51.266 | 158 | 75 | 2 | 44 | 199 | 21 | 178 | 3.39e-45 | 149 |
| MS.gene008354.t1 | AT1G17200 | 55.660 | 106 | 44 | 2 | 109 | 212 | 2 | 106 | 2.58e-34 | 119 |
| MS.gene008354.t1 | AT5G54980 | 37.059 | 170 | 99 | 4 | 43 | 209 | 29 | 193 | 4.26e-27 | 102 |
| MS.gene008354.t1 | AT4G16442 | 31.098 | 164 | 103 | 3 | 43 | 196 | 8 | 171 | 2.66e-16 | 74.3 |
| MS.gene008354.t1 | AT2G35760 | 28.902 | 173 | 113 | 3 | 43 | 205 | 27 | 199 | 1.51e-14 | 69.7 |
| MS.gene008354.t1 | AT1G03700 | 31.333 | 150 | 93 | 4 | 44 | 188 | 7 | 151 | 3.93e-14 | 67.8 |
| MS.gene008354.t1 | AT4G15630 | 28.319 | 113 | 79 | 1 | 82 | 192 | 77 | 189 | 1.09e-12 | 64.7 |
| MS.gene008354.t1 | AT2G27370 | 33.051 | 118 | 76 | 2 | 78 | 192 | 100 | 217 | 5.14e-12 | 63.2 |
| MS.gene008354.t1 | AT4G03540 | 31.148 | 122 | 74 | 4 | 63 | 179 | 26 | 142 | 1.20e-11 | 61.2 |
| MS.gene008354.t1 | AT5G15290 | 33.663 | 101 | 64 | 1 | 78 | 175 | 66 | 166 | 2.96e-11 | 60.5 |
| MS.gene008354.t1 | AT4G15620 | 26.549 | 113 | 81 | 1 | 82 | 192 | 77 | 189 | 6.02e-11 | 59.7 |
Find 55 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCAGCTTGTGGCTCTTT+TGG | 0.209207 | 3.1:-53740325 | MS.gene008354:CDS |
| ACAATGACCTTGGAGCTTTC+AGG | 0.215827 | 3.1:-53742809 | MS.gene008354:intron |
| TGGTCATTGCCTGTAGTATT+AGG | 0.217265 | 3.1:+53740178 | None:intergenic |
| AAGGAAGTTGTGTTTCCTTC+AGG | 0.294892 | 3.1:+53742942 | None:intergenic |
| AAGCTTGTAAGAGGAAATTA+TGG | 0.310588 | 3.1:+53740231 | None:intergenic |
| AATTCCGAAGAAAATGATTA+TGG | 0.329214 | 3.1:-53742843 | MS.gene008354:CDS |
| GCCCAACTCTGCTTCGTGCT+TGG | 0.360113 | 3.1:-53741341 | MS.gene008354:CDS |
| TATGTAACGTTGTAGGTATT+TGG | 0.361810 | 3.1:-53741427 | MS.gene008354:intron |
| GTAGTATTAGGGCAACTTGC+TGG | 0.376513 | 3.1:+53740190 | None:intergenic |
| TTCCTGCGTCTTCTTCCAAT+TGG | 0.380100 | 3.1:-53742900 | MS.gene008354:CDS |
| GCACCTGCTGCTGCTACAAC+TGG | 0.405372 | 3.1:-53743874 | MS.gene008354:CDS |
| AGCACGAAGCAGAGTTGGGC+GGG | 0.407289 | 3.1:+53741344 | None:intergenic |
| CACATTGCTCCAGCTTTCAA+TGG | 0.421348 | 3.1:-53740157 | MS.gene008354:CDS |
| GAAAGCTCCAAGGTCATTGT+AGG | 0.431102 | 3.1:+53742812 | None:intergenic |
| AATAACGACAGCAGAAAGTA+AGG | 0.447996 | 3.1:+53741374 | None:intergenic |
| GGTCATTGCCTGTAGTATTA+GGG | 0.451380 | 3.1:+53740179 | None:intergenic |
| AGCTACAAGGTCTCCAATGC+AGG | 0.451468 | 3.1:-53743905 | MS.gene008354:CDS |
| ATTGCTGAAAAGCTTGTAAG+AGG | 0.453945 | 3.1:+53740222 | None:intergenic |
| ATGGAGACAGTGCAACAGTA+TGG | 0.454804 | 3.1:-53740348 | MS.gene008354:CDS |
| TCTGTTTCCTACAATGACCT+TGG | 0.457093 | 3.1:-53742819 | MS.gene008354:CDS |
| TCTCCAGTTGTAGCAGCAGC+AGG | 0.461731 | 3.1:+53743871 | None:intergenic |
| GCTGCTACACAAAGACCAAT+TGG | 0.462827 | 3.1:+53742885 | None:intergenic |
| GTCTCCAATGCAGGTTATGA+TGG | 0.463901 | 3.1:-53743896 | MS.gene008354:CDS |
| GTCCAAGCACGAAGCAGAGT+TGG | 0.474514 | 3.1:+53741339 | None:intergenic |
| TCCAAGCACGAAGCAGAGTT+GGG | 0.479157 | 3.1:+53741340 | None:intergenic |
| CACGAAGCAGAGTTGGGCGG+GGG | 0.480033 | 3.1:+53741346 | None:intergenic |
| CATGCAAATGGCATTTGCGC+AGG | 0.482913 | 3.1:-53741402 | MS.gene008354:CDS |
| GCACGAAGCAGAGTTGGGCG+GGG | 0.494079 | 3.1:+53741345 | None:intergenic |
| GTAAGCTAGCCATTGAAAGC+TGG | 0.510655 | 3.1:+53740148 | None:intergenic |
| GGGAGCTTCGTCAATGGAGG+TGG | 0.513641 | 3.1:-53740386 | MS.gene008354:CDS |
| TAGTATTAGGGCAACTTGCT+GGG | 0.513690 | 3.1:+53740191 | None:intergenic |
| AGGTATTTGGTGCATGCAAA+TGG | 0.521302 | 3.1:-53741414 | MS.gene008354:CDS |
| GAGCGCGGGAGCTTCGTCAA+TGG | 0.524818 | 3.1:-53740392 | MS.gene008354:CDS |
| CACTGTCTCCATTCTCAGCT+AGG | 0.525126 | 3.1:+53740359 | None:intergenic |
| AGGAAGTTGTGTTTCCTTCA+GGG | 0.526789 | 3.1:+53742943 | None:intergenic |
| GTGGTGTACCTAGCTGAGAA+TGG | 0.532841 | 3.1:-53740367 | MS.gene008354:CDS |
| TAACTTAGCTTCGCCCCTGA+AGG | 0.535642 | 3.1:-53742957 | MS.gene008354:intron |
| ACACAATATAGTGATGATGA+TGG | 0.543875 | 3.1:-53743953 | None:intergenic |
| GGTGCCATCATAACCTGCAT+TGG | 0.545200 | 3.1:+53743892 | None:intergenic |
| GCAAGTTGCCCTAATACTAC+AGG | 0.548179 | 3.1:-53740187 | MS.gene008354:CDS |
| ACGAAGCAGAGTTGGGCGGG+GGG | 0.552378 | 3.1:+53741347 | None:intergenic |
| CGCGGGAGCTTCGTCAATGG+AGG | 0.555180 | 3.1:-53740389 | MS.gene008354:CDS |
| GTACTGTAGTTTCAGCTACA+AGG | 0.558505 | 3.1:-53743918 | MS.gene008354:CDS |
| GGAAGTTGTGTTTCCTTCAG+GGG | 0.568488 | 3.1:+53742944 | None:intergenic |
| ATGATGATGGAGAAAGGTAC+TGG | 0.596215 | 3.1:-53743940 | MS.gene008354:CDS |
| TGTCTCAGCAGTGCGTAGGA+AGG | 0.600277 | 3.1:+53742923 | None:intergenic |
| AAAAGGGAGGAACCTGGTCA+AGG | 0.601094 | 3.1:+53741307 | None:intergenic |
| ATAGTGATGATGATGGAGAA+AGG | 0.601228 | 3.1:-53743946 | None:intergenic |
| AAGCACGAAGCAGAGTTGGG+CGG | 0.622018 | 3.1:+53741343 | None:intergenic |
| ATATATACCTGAAAGCTCCA+AGG | 0.630274 | 3.1:+53742802 | None:intergenic |
| GGAATGTCTCAGCAGTGCGT+AGG | 0.633276 | 3.1:+53742919 | None:intergenic |
| TGCTGCTGCTACAACTGGAG+AGG | 0.641197 | 3.1:-53743869 | MS.gene008354:CDS |
| GACCAATTGGAAGAAGACGC+AGG | 0.654347 | 3.1:+53742898 | None:intergenic |
| CATTGAAAGCTGGAGCAATG+TGG | 0.700472 | 3.1:+53740158 | None:intergenic |
| ACAGTATGGAACTCAGCTTG+TGG | 0.703926 | 3.1:-53740334 | MS.gene008354:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATAAAATTTTTATATT+TGG | + | chr3.1:53740298-53740317 | None:intergenic | 0.0% |
| !! | AAATAAAACAAAAAAAATTG+GGG | - | chr3.1:53740559-53740578 | MS.gene008354:intron | 10.0% |
| !! | CAAATAAAACAAAAAAAATT+GGG | - | chr3.1:53740558-53740577 | MS.gene008354:intron | 10.0% |
| !! | TCAAATAAAACAAAAAAAAT+TGG | - | chr3.1:53740557-53740576 | MS.gene008354:intron | 10.0% |
| !! | TTAAATTAAAAGGAAAAAAA+TGG | + | chr3.1:53740995-53741014 | None:intergenic | 10.0% |
| !!! | CATATTTTTAATTGAAATTT+AGG | + | chr3.1:53743427-53743446 | None:intergenic | 10.0% |
| !!! | CTAAAAAAATATTTTAATAG+AGG | + | chr3.1:53741692-53741711 | None:intergenic | 10.0% |
| !! | AAATTAAAGAATGAATTTAG+TGG | + | chr3.1:53741731-53741750 | None:intergenic | 15.0% |
| !! | ATGATAAATAAACTTATTTG+AGG | - | chr3.1:53740483-53740502 | MS.gene008354:intron | 15.0% |
| !! | GAAAAATAATTTATAAACAG+TGG | + | chr3.1:53741927-53741946 | None:intergenic | 15.0% |
| !! | GTAGCTAAATATATATTATT+GGG | - | chr3.1:53740505-53740524 | MS.gene008354:intron | 15.0% |
| !! | TAGCTAAATATATATTATTG+GGG | - | chr3.1:53740506-53740525 | MS.gene008354:intron | 15.0% |
| !! | TGATTAATAATCTAATTGAA+TGG | - | chr3.1:53742926-53742945 | MS.gene008354:CDS | 15.0% |
| !!! | AATTGTTATTTCGTAAATTT+TGG | + | chr3.1:53741664-53741683 | None:intergenic | 15.0% |
| !!! | ACTTTGAAAATAAAAATGAA+GGG | + | chr3.1:53740711-53740730 | None:intergenic | 15.0% |
| !!! | ATTAGTTGTATTTTTGTTTT+TGG | + | chr3.1:53743268-53743287 | None:intergenic | 15.0% |
| !!! | ATTATATGCTATTTTTAAGT+AGG | - | chr3.1:53742262-53742281 | MS.gene008354:intron | 15.0% |
| !!! | TACTTTGAAAATAAAAATGA+AGG | + | chr3.1:53740712-53740731 | None:intergenic | 15.0% |
| !!! | TCTTATTTTTTGTATAGTAT+AGG | + | chr3.1:53740438-53740457 | None:intergenic | 15.0% |
| !!! | TTATATGCTATTTTTAAGTA+GGG | - | chr3.1:53742263-53742282 | MS.gene008354:intron | 15.0% |
| !!! | TTCATTTTTATTTTCAAAGT+AGG | - | chr3.1:53740711-53740730 | MS.gene008354:intron | 15.0% |
| !! | ACTAATTTGATCTTACATAA+TGG | + | chr3.1:53743306-53743325 | None:intergenic | 20.0% |
| !! | AGATTCATATTACAGTATAT+AGG | + | chr3.1:53742867-53742886 | None:intergenic | 20.0% |
| !! | GGTAGCTAAATATATATTAT+TGG | - | chr3.1:53740504-53740523 | MS.gene008354:intron | 20.0% |
| !! | TAAAATAGCGTAAGATATAT+AGG | + | chr3.1:53743054-53743073 | None:intergenic | 20.0% |
| !! | TATATAGGAAGTTATAGATT+AGG | + | chr3.1:53743039-53743058 | None:intergenic | 20.0% |
| !! | TATCTTTATAAGCTCAATTA+AGG | - | chr3.1:53742155-53742174 | MS.gene008354:intron | 20.0% |
| !! | TCAATTAAAAATATGCTTAG+TGG | - | chr3.1:53743432-53743451 | MS.gene008354:intron | 20.0% |
| !! | TGGCTAACTTTATTATTAAT+TGG | + | chr3.1:53741907-53741926 | None:intergenic | 20.0% |
| !!! | AAAAATGTGTTGATTATTGA+CGG | + | chr3.1:53743468-53743487 | None:intergenic | 20.0% |
| !!! | AAAATCGATTTGTAAAGTAA+AGG | - | chr3.1:53742071-53742090 | MS.gene008354:intron | 20.0% |
| !!! | AAATAATTTTGGTTAGTGAT+TGG | - | chr3.1:53742632-53742651 | MS.gene008354:intron | 20.0% |
| !!! | AATAATTTTGGTTAGTGATT+GGG | - | chr3.1:53742633-53742652 | MS.gene008354:intron | 20.0% |
| !!! | AATTTGCTTATAAAACGTAA+CGG | + | chr3.1:53740610-53740629 | None:intergenic | 20.0% |
| !!! | ATAAAAATGAAGGGTATTTT+TGG | + | chr3.1:53740702-53740721 | None:intergenic | 20.0% |
| !!! | ATCATATCAGATTTTTACAT+TGG | - | chr3.1:53742031-53742050 | MS.gene008354:intron | 20.0% |
| !!! | CAGTTTAGTTTTAGTTTTTT+GGG | + | chr3.1:53741797-53741816 | None:intergenic | 20.0% |
| !!! | TCAGTTTAGTTTTAGTTTTT+TGG | + | chr3.1:53741798-53741817 | None:intergenic | 20.0% |
| !!! | TCTATTTCCTTTTATAGTTA+AGG | - | chr3.1:53743106-53743125 | MS.gene008354:intron | 20.0% |
| !!! | TTCCTTTTAATTTAATTCGA+GGG | - | chr3.1:53741000-53741019 | MS.gene008354:intron | 20.0% |
| !!! | TTGACTTCGAATATATATTT+TGG | - | chr3.1:53742602-53742621 | MS.gene008354:intron | 20.0% |
| !!! | TTGGTCAAACTAAATAATTT+TGG | - | chr3.1:53742621-53742640 | MS.gene008354:intron | 20.0% |
| !!! | TTTCCTTTTAATTTAATTCG+AGG | - | chr3.1:53740999-53741018 | MS.gene008354:intron | 20.0% |
| ! | AAAATCGATGTGTAAAGTAA+AGG | - | chr3.1:53742127-53742146 | MS.gene008354:intron | 25.0% |
| ! | AATTCCGAAGAAAATGATTA+TGG | - | chr3.1:53741250-53741269 | MS.gene008354:intron | 25.0% |
| ! | ACTAAAGAGAATTTCTTTCT+TGG | + | chr3.1:53741444-53741463 | None:intergenic | 25.0% |
| ! | ATGTCTAACACTATTGAATT+TGG | - | chr3.1:53741963-53741982 | MS.gene008354:intron | 25.0% |
| ! | ATTAAAATAGAGTCAACAAG+CGG | + | chr3.1:53742467-53742486 | None:intergenic | 25.0% |
| ! | ATTATTGAAATAGCAACACT+TGG | + | chr3.1:53743520-53743539 | None:intergenic | 25.0% |
| ! | GAAAACATCAAACATCTATA+AGG | - | chr3.1:53742988-53743007 | MS.gene008354:intron | 25.0% |
| ! | TACCCTCGAATTAAATTAAA+AGG | + | chr3.1:53741005-53741024 | None:intergenic | 25.0% |
| ! | TCTAATTGAATGGAGAAAAA+TGG | - | chr3.1:53742936-53742955 | MS.gene008354:CDS | 25.0% |
| ! | TGATACAATCAAGTAGTAAT+GGG | - | chr3.1:53740760-53740779 | MS.gene008354:intron | 25.0% |
| ! | TTATGTATGTTAGTACCTAT+AGG | + | chr3.1:53743677-53743696 | None:intergenic | 25.0% |
| ! | TTGATACAATCAAGTAGTAA+TGG | - | chr3.1:53740759-53740778 | MS.gene008354:intron | 25.0% |
| ! | TTTAGTAGTTGGATTAAGAT+CGG | + | chr3.1:53743374-53743393 | None:intergenic | 25.0% |
| ! | TTTGTTACAACTTTAGTAGT+TGG | + | chr3.1:53743385-53743404 | None:intergenic | 25.0% |
| !! | AATTCGTTATATTTTGTGTG+TGG | - | chr3.1:53742891-53742910 | MS.gene008354:CDS | 25.0% |
| !! | AGAACCATAATCATTTTCTT+CGG | + | chr3.1:53741257-53741276 | None:intergenic | 25.0% |
| !! | ATTTCCTTTTATAGTTAAGG+AGG | - | chr3.1:53743109-53743128 | MS.gene008354:intron | 25.0% |
| !! | CTTTTGCTTATAAAACGTAA+CGG | - | chr3.1:53741101-53741120 | MS.gene008354:intron | 25.0% |
| !! | GTAAAGGAGACTTTTTATAT+TGG | - | chr3.1:53742087-53742106 | MS.gene008354:intron | 25.0% |
| !! | TTTTATATCTGTGCAATTTG+TGG | - | chr3.1:53743484-53743503 | MS.gene008354:intron | 25.0% |
| !! | TTTTCTTTACTTGTTTGAGT+AGG | + | chr3.1:53741326-53741345 | None:intergenic | 25.0% |
| !! | TTTTGGTCAATTTTGTCATA+AGG | - | chr3.1:53743785-53743804 | MS.gene008354:intron | 25.0% |
| !!! | AATGAATTTAGTGGTTTTGA+TGG | + | chr3.1:53741722-53741741 | None:intergenic | 25.0% |
| !!! | AATTTAATTCGAGGGTATTT+TGG | - | chr3.1:53741008-53741027 | MS.gene008354:intron | 25.0% |
| !!! | ACACACACAATAATTTTTTG+AGG | - | chr3.1:53742817-53742836 | MS.gene008354:CDS | 25.0% |
| !!! | AGTTTTGTAGATTGTAACAA+TGG | - | chr3.1:53741461-53741480 | MS.gene008354:intron | 25.0% |
| !!! | CGATTTTGTAATCATTGATT+TGG | + | chr3.1:53742058-53742077 | None:intergenic | 25.0% |
| !!! | TTCCTTTGTTATTCTTATTG+TGG | - | chr3.1:53740795-53740814 | MS.gene008354:intron | 25.0% |
| AAGCTTGTAAGAGGAAATTA+TGG | + | chr3.1:53743865-53743884 | None:intergenic | 30.0% | |
| ACAATTATCAAAACAAGCGA+GGG | + | chr3.1:53740854-53740873 | None:intergenic | 30.0% | |
| ATAAGGCTAACCAATTAGTA+AGG | - | chr3.1:53743005-53743024 | MS.gene008354:intron | 30.0% | |
| CCTTAATAAGTGTGAAATGA+CGG | - | chr3.1:53741078-53741097 | MS.gene008354:intron | 30.0% | |
| CTAACACTATTGAATTTGGT+GGG | - | chr3.1:53741967-53741986 | MS.gene008354:intron | 30.0% | |
| GGCAAATGAAATTGGAATTT+AGG | - | chr3.1:53742550-53742569 | MS.gene008354:intron | 30.0% | |
| TACAATTATCAAAACAAGCG+AGG | + | chr3.1:53740855-53740874 | None:intergenic | 30.0% | |
| TAGGACATTTAGTAAACGAT+TGG | - | chr3.1:53742569-53742588 | MS.gene008354:intron | 30.0% | |
| TATCATGCTTTAGTCATTGA+TGG | - | chr3.1:53742526-53742545 | MS.gene008354:intron | 30.0% | |
| TATGTAACGTTGTAGGTATT+TGG | - | chr3.1:53742666-53742685 | MS.gene008354:intron | 30.0% | |
| TCAATTGTGAAAATTGTGCA+TGG | - | chr3.1:53741578-53741597 | MS.gene008354:intron | 30.0% | |
| TCTAACACTATTGAATTTGG+TGG | - | chr3.1:53741966-53741985 | MS.gene008354:intron | 30.0% | |
| TGCCACAATAAGAATAACAA+AGG | + | chr3.1:53740800-53740819 | None:intergenic | 30.0% | |
| TGCTTGACAAAAAACAGTTT+CGG | + | chr3.1:53743574-53743593 | None:intergenic | 30.0% | |
| TGGAGAAAAATGGTACAAAA+TGG | - | chr3.1:53742946-53742965 | MS.gene008354:CDS | 30.0% | |
| TGTAACGATTTCTTTCCTAT+AGG | - | chr3.1:53743659-53743678 | MS.gene008354:intron | 30.0% | |
| TGTACCTCCTTAACTATAAA+AGG | + | chr3.1:53743116-53743135 | None:intergenic | 30.0% | |
| TTAAGGCTCTTTAGATTCTA+TGG | - | chr3.1:53742172-53742191 | MS.gene008354:intron | 30.0% | |
| TTGAATGTATGTAACGTTGT+AGG | - | chr3.1:53742659-53742678 | MS.gene008354:intron | 30.0% | |
| ! | AACATACATAATTTTGAGCG+CGG | - | chr3.1:53743686-53743705 | MS.gene008354:intron | 30.0% |
| AATAACGACAGCAGAAAGTA+AGG | + | chr3.1:53742722-53742741 | None:intergenic | 35.0% | |
| ACGAGTGGAAAACAAACTTA+CGG | + | chr3.1:53741526-53741545 | None:intergenic | 35.0% | |
| ATAGTGTTAGACATGATGAG+AGG | + | chr3.1:53741957-53741976 | None:intergenic | 35.0% | |
| ATATATACCTGAAAGCTCCA+AGG | + | chr3.1:53741294-53741313 | None:intergenic | 35.0% | |
| ATTCTTACGCATCGAATTTG+AGG | + | chr3.1:53742229-53742248 | None:intergenic | 35.0% | |
| ATTGCTGAAAAGCTTGTAAG+AGG | + | chr3.1:53743874-53743893 | None:intergenic | 35.0% | |
| CCAAACATGAAATGAAACTC+AGG | - | chr3.1:53743597-53743616 | MS.gene008354:intron | 35.0% | |
| CCGTCATTTCACACTTATTA+AGG | + | chr3.1:53741081-53741100 | None:intergenic | 35.0% | |
| CCTGAGTTTCATTTCATGTT+TGG | + | chr3.1:53743600-53743619 | None:intergenic | 35.0% | |
| GAGAATTATTACTTCACGAG+TGG | + | chr3.1:53741541-53741560 | None:intergenic | 35.0% | |
| GCTTGACAAAAAACAGTTTC+GGG | + | chr3.1:53743573-53743592 | None:intergenic | 35.0% | |
| GGAGTTAGTTCCTTACTAAT+TGG | + | chr3.1:53743018-53743037 | None:intergenic | 35.0% | |
| TCAAATTCGATGCGTAAGAA+TGG | - | chr3.1:53742228-53742247 | MS.gene008354:intron | 35.0% | |
| TGCTACTAAAAACGCACTAT+TGG | - | chr3.1:53743167-53743186 | MS.gene008354:intron | 35.0% | |
| TGTTATTCTTATTGTGGCAC+TGG | - | chr3.1:53740801-53740820 | MS.gene008354:intron | 35.0% | |
| TTGCTTATAAAACGTAACGG+AGG | - | chr3.1:53741104-53741123 | MS.gene008354:intron | 35.0% | |
| TTGCTTATAAAACGTAACGG+AGG | + | chr3.1:53741123-53741104 | None:intergenic | 35.0% | |
| ! | ACATACATAATTTTGAGCGC+GGG | - | chr3.1:53743687-53743706 | MS.gene008354:intron | 35.0% |
| ! | TGCTTATAAAACGTAACGGA+GGG | - | chr3.1:53741105-53741124 | MS.gene008354:intron | 35.0% |
| ! | TGCTTATAAAACGTAACGGA+GGG | + | chr3.1:53741124-53741105 | None:intergenic | 35.0% |
| !! | TTGATGGTGGCAAATGAAAT+TGG | - | chr3.1:53742542-53742561 | MS.gene008354:intron | 35.0% |
| !!! | AAGCTAGCAACTTTTTTACG+AGG | - | chr3.1:53740269-53740288 | MS.gene008354:CDS | 35.0% |
| !!! | AGCTAGCAACTTTTTTACGA+GGG | - | chr3.1:53740270-53740289 | MS.gene008354:CDS | 35.0% |
| !!! | CACATCGATTTTGTAAGCAT+TGG | + | chr3.1:53742119-53742138 | None:intergenic | 35.0% |
| AAAACCAAAACCAAAACGCG+TGG | + | chr3.1:53740942-53740961 | None:intergenic | 40.0% | |
| AAGGAAGTTGTGTTTCCTTC+AGG | + | chr3.1:53741154-53741173 | None:intergenic | 40.0% | |
| AGGAAGTTGTGTTTCCTTCA+GGG | + | chr3.1:53741153-53741172 | None:intergenic | 40.0% | |
| CATGCTTTAGTCATTGATGG+TGG | - | chr3.1:53742529-53742548 | MS.gene008354:intron | 40.0% | |
| GCAAGATTGCACAGGATAAA+GGG | + | chr3.1:53742328-53742347 | None:intergenic | 40.0% | |
| GGTCATTGCCTGTAGTATTA+GGG | + | chr3.1:53743917-53743936 | None:intergenic | 40.0% | |
| GTACTGTAGTTTCAGCTACA+AGG | - | chr3.1:53740175-53740194 | MS.gene008354:CDS | 40.0% | |
| GTGTGTGTGTGAACAGAAAA+GGG | + | chr3.1:53742805-53742824 | None:intergenic | 40.0% | |
| TAACATGTGCAAGATTGCAC+AGG | + | chr3.1:53742336-53742355 | None:intergenic | 40.0% | |
| TCTGTTTCCTACAATGACCT+TGG | - | chr3.1:53741274-53741293 | MS.gene008354:intron | 40.0% | |
| TGCAAGATTGCACAGGATAA+AGG | + | chr3.1:53742329-53742348 | None:intergenic | 40.0% | |
| TGGTCATTGCCTGTAGTATT+AGG | + | chr3.1:53743918-53743937 | None:intergenic | 40.0% | |
| TGTGCAATCTTGCACATGTT+AGG | - | chr3.1:53742335-53742354 | MS.gene008354:intron | 40.0% | |
| TGTGTGTGTGTGAACAGAAA+AGG | + | chr3.1:53742806-53742825 | None:intergenic | 40.0% | |
| TTAGTCTCCTTGCATGGTAT+TGG | - | chr3.1:53740828-53740847 | MS.gene008354:intron | 40.0% | |
| ! | AGACATGATGAGAGGAGTAT+TGG | + | chr3.1:53741949-53741968 | None:intergenic | 40.0% |
| ! | GACTTTCTTTTTCCTTGACC+AGG | - | chr3.1:53742774-53742793 | MS.gene008354:intron | 40.0% |
| ! | TAGTATTAGGGCAACTTGCT+GGG | + | chr3.1:53743905-53743924 | None:intergenic | 40.0% |
| ! | TTTTGTGTGTGGTACATGAC+AGG | - | chr3.1:53742902-53742921 | MS.gene008354:CDS | 40.0% |
| !! | AGGTATTTGGTGCATGCAAA+TGG | - | chr3.1:53742679-53742698 | MS.gene008354:intron | 40.0% |
| !! | ATGATGATGGAGAAAGGTAC+TGG | - | chr3.1:53740153-53740172 | MS.gene008354:CDS | 40.0% |
| !!! | CTAGCAACTTTTTTACGAGG+GGG | - | chr3.1:53740272-53740291 | MS.gene008354:CDS | 40.0% |
| !!! | GCTAGCAACTTTTTTACGAG+GGG | - | chr3.1:53740271-53740290 | MS.gene008354:CDS | 40.0% |
| ACAATGACCTTGGAGCTTTC+AGG | - | chr3.1:53741284-53741303 | MS.gene008354:intron | 45.0% | |
| ACAGTATGGAACTCAGCTTG+TGG | - | chr3.1:53743759-53743778 | MS.gene008354:intron | 45.0% | |
| ACGCATCGAATTTGAGGATG+AGG | + | chr3.1:53742223-53742242 | None:intergenic | 45.0% | |
| ATGGAGACAGTGCAACAGTA+TGG | - | chr3.1:53743745-53743764 | MS.gene008354:intron | 45.0% | |
| CACATTGCTCCAGCTTTCAA+TGG | - | chr3.1:53743936-53743955 | MS.gene008354:CDS | 45.0% | |
| CATTGAAAGCTGGAGCAATG+TGG | + | chr3.1:53743938-53743957 | None:intergenic | 45.0% | |
| GAAAGCTCCAAGGTCATTGT+AGG | + | chr3.1:53741284-53741303 | None:intergenic | 45.0% | |
| GCAAGTTGCCCTAATACTAC+AGG | - | chr3.1:53743906-53743925 | MS.gene008354:CDS | 45.0% | |
| GCTGCTACACAAAGACCAAT+TGG | + | chr3.1:53741211-53741230 | None:intergenic | 45.0% | |
| GGAAGTTGTGTTTCCTTCAG+GGG | + | chr3.1:53741152-53741171 | None:intergenic | 45.0% | |
| GTAGTATTAGGGCAACTTGC+TGG | + | chr3.1:53743906-53743925 | None:intergenic | 45.0% | |
| GTCTCCAATGCAGGTTATGA+TGG | - | chr3.1:53740197-53740216 | MS.gene008354:CDS | 45.0% | |
| TGTCATGTGCAATCTTGCAC+AGG | + | chr3.1:53742298-53742317 | None:intergenic | 45.0% | |
| TGTGTGTGAACAGAAAAGGG+AGG | + | chr3.1:53742802-53742821 | None:intergenic | 45.0% | |
| TTCCTGCGTCTTCTTCCAAT+TGG | - | chr3.1:53741193-53741212 | MS.gene008354:intron | 45.0% | |
| ! | AAAACGTAACGGAGGGAGTA+TGG | + | chr3.1:53741131-53741112 | None:intergenic | 45.0% |
| ! | AAACGTAACGGAGGGAGTAT+GGG | + | chr3.1:53740598-53740617 | None:intergenic | 45.0% |
| ! | AACTCAGCTTGTGGCTCTTT+TGG | - | chr3.1:53743768-53743787 | MS.gene008354:intron | 45.0% |
| ! | TAAAACGTAACGGAGGGAGT+AGG | - | chr3.1:53741111-53741130 | MS.gene008354:intron | 45.0% |
| !!! | CTTTCCACGCGTTTTGGTTT+TGG | - | chr3.1:53740935-53740954 | MS.gene008354:intron | 45.0% |
| AAAAGGGAGGAACCTGGTCA+AGG | + | chr3.1:53742789-53742808 | None:intergenic | 50.0% | |
| ACAACTGGAGAGGAGTTGGA+AGG | - | chr3.1:53740234-53740253 | MS.gene008354:CDS | 50.0% | |
| AGCTACAAGGTCTCCAATGC+AGG | - | chr3.1:53740188-53740207 | MS.gene008354:CDS | 50.0% | |
| AGGAGTTGGAAGGAAACCAG+CGG | - | chr3.1:53740244-53740263 | MS.gene008354:CDS | 50.0% | |
| CACTGTCTCCATTCTCAGCT+AGG | + | chr3.1:53743737-53743756 | None:intergenic | 50.0% | |
| CATGCAAATGGCATTTGCGC+AGG | - | chr3.1:53742691-53742710 | MS.gene008354:intron | 50.0% | |
| GAACAGAAAAGGGAGGAACC+TGG | + | chr3.1:53742795-53742814 | None:intergenic | 50.0% | |
| GACCAATTGGAAGAAGACGC+AGG | + | chr3.1:53741198-53741217 | None:intergenic | 50.0% | |
| GTGGTGTACCTAGCTGAGAA+TGG | - | chr3.1:53743726-53743745 | MS.gene008354:intron | 50.0% | |
| TAACTTAGCTTCGCCCCTGA+AGG | - | chr3.1:53741136-53741155 | MS.gene008354:intron | 50.0% | |
| TCCAAGCACGAAGCAGAGTT+GGG | + | chr3.1:53742756-53742775 | None:intergenic | 50.0% | |
| TGCTACAACTGGAGAGGAGT+TGG | - | chr3.1:53740230-53740249 | MS.gene008354:CDS | 50.0% | |
| ! | AACGTAACGGAGGGAGTATG+GGG | + | chr3.1:53740597-53740616 | None:intergenic | 50.0% |
| ! | CTGCAACTTTCCACGCGTTT+TGG | - | chr3.1:53740929-53740948 | MS.gene008354:intron | 50.0% |
| ! | GGTGCCATCATAACCTGCAT+TGG | + | chr3.1:53740204-53740223 | None:intergenic | 50.0% |
| AAGCACGAAGCAGAGTTGGG+CGG | + | chr3.1:53742753-53742772 | None:intergenic | 55.0% | |
| CGTGGAAAGTTGCAGCTCGT+TGG | + | chr3.1:53740924-53740943 | None:intergenic | 55.0% | |
| GGAATGTCTCAGCAGTGCGT+AGG | + | chr3.1:53741177-53741196 | None:intergenic | 55.0% | |
| GTCCAAGCACGAAGCAGAGT+TGG | + | chr3.1:53742757-53742776 | None:intergenic | 55.0% | |
| TCTCCAGTTGTAGCAGCAGC+AGG | + | chr3.1:53740225-53740244 | None:intergenic | 55.0% | |
| TGCTGCTGCTACAACTGGAG+AGG | - | chr3.1:53740224-53740243 | MS.gene008354:CDS | 55.0% | |
| TGTCTCAGCAGTGCGTAGGA+AGG | + | chr3.1:53741173-53741192 | None:intergenic | 55.0% | |
| ! | AAAGTTGCTAGCTTCGCCGC+TGG | + | chr3.1:53740263-53740282 | None:intergenic | 55.0% |
| ! | GAGGGAGTATGGGGTAGCAT+TGG | + | chr3.1:53740588-53740607 | None:intergenic | 55.0% |
| ! | GGCACGTTAGTCTCCTTGCA+TGG | - | chr3.1:53740822-53740841 | MS.gene008354:intron | 55.0% |
| AGCACGAAGCAGAGTTGGGC+GGG | + | chr3.1:53742752-53742771 | None:intergenic | 60.0% | |
| GCACCTGCTGCTGCTACAAC+TGG | - | chr3.1:53740219-53740238 | MS.gene008354:CDS | 60.0% | |
| GCCCAACTCTGCTTCGTGCT+TGG | - | chr3.1:53742752-53742771 | MS.gene008354:intron | 60.0% | |
| GCGAGGGCCAATACCATGCA+AGG | + | chr3.1:53740838-53740857 | None:intergenic | 60.0% | |
| GGGAGCTTCGTCAATGGAGG+TGG | - | chr3.1:53743707-53743726 | MS.gene008354:intron | 60.0% | |
| ACGAAGCAGAGTTGGGCGGG+GGG | + | chr3.1:53742749-53742768 | None:intergenic | 65.0% | |
| CACGAAGCAGAGTTGGGCGG+GGG | + | chr3.1:53742750-53742769 | None:intergenic | 65.0% | |
| CGCGGGAGCTTCGTCAATGG+AGG | - | chr3.1:53743704-53743723 | MS.gene008354:intron | 65.0% | |
| GAGCGCGGGAGCTTCGTCAA+TGG | - | chr3.1:53743701-53743720 | MS.gene008354:intron | 65.0% | |
| GCACGAAGCAGAGTTGGGCG+GGG | + | chr3.1:53742751-53742770 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 53740153 | 53743962 | 53740153 | ID=MS.gene008354 |
| chr3.1 | mRNA | 53740153 | 53743962 | 53740153 | ID=MS.gene008354.t1;Parent=MS.gene008354 |
| chr3.1 | exon | 53743868 | 53743962 | 53743868 | ID=MS.gene008354.t1.exon1;Parent=MS.gene008354.t1 |
| chr3.1 | CDS | 53743868 | 53743962 | 53743868 | ID=cds.MS.gene008354.t1;Parent=MS.gene008354.t1 |
| chr3.1 | exon | 53742810 | 53742971 | 53742810 | ID=MS.gene008354.t1.exon2;Parent=MS.gene008354.t1 |
| chr3.1 | CDS | 53742810 | 53742971 | 53742810 | ID=cds.MS.gene008354.t1;Parent=MS.gene008354.t1 |
| chr3.1 | exon | 53741320 | 53741434 | 53741320 | ID=MS.gene008354.t1.exon3;Parent=MS.gene008354.t1 |
| chr3.1 | CDS | 53741320 | 53741434 | 53741320 | ID=cds.MS.gene008354.t1;Parent=MS.gene008354.t1 |
| chr3.1 | exon | 53740153 | 53740434 | 53740153 | ID=MS.gene008354.t1.exon4;Parent=MS.gene008354.t1 |
| chr3.1 | CDS | 53740153 | 53740434 | 53740153 | ID=cds.MS.gene008354.t1;Parent=MS.gene008354.t1 |
| Gene Sequence |
| Protein sequence |
