Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81771.t1 | XP_013467945.1 | 97.4 | 195 | 5 | 0 | 1 | 195 | 1 | 195 | 1.20E-91 | 345.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81771.t1 | P0DI39 | 84.0 | 194 | 30 | 1 | 1 | 194 | 1 | 193 | 1.9e-80 | 300.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81771.t1 | A0A072VJL1 | 97.4 | 195 | 5 | 0 | 1 | 195 | 1 | 195 | 8.8e-92 | 345.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049549 | MS.gene81771 | 0.808384 | 3.18E-50 | -1.69E-46 |
| MS.gene051996 | MS.gene81771 | 0.818945 | 1.50E-52 | -1.69E-46 |
| MS.gene054138 | MS.gene81771 | 0.819497 | 1.13E-52 | -1.69E-46 |
| MS.gene054277 | MS.gene81771 | 0.808685 | 2.74E-50 | -1.69E-46 |
| MS.gene054742 | MS.gene81771 | 0.838031 | 3.66E-57 | -1.69E-46 |
| MS.gene056330 | MS.gene81771 | 0.854878 | 9.18E-62 | -1.69E-46 |
| MS.gene056920 | MS.gene81771 | 0.840194 | 1.01E-57 | -1.69E-46 |
| MS.gene056922 | MS.gene81771 | 0.890103 | 1.33E-73 | -1.69E-46 |
| MS.gene056923 | MS.gene81771 | 0.847971 | 8.25E-60 | -1.69E-46 |
| MS.gene056924 | MS.gene81771 | 0.85988 | 3.05E-63 | -1.69E-46 |
| MS.gene056925 | MS.gene81771 | 0.822558 | 2.22E-53 | -1.69E-46 |
| MS.gene057261 | MS.gene81771 | 0.816968 | 4.21E-52 | -1.69E-46 |
| MS.gene060087 | MS.gene81771 | 0.819088 | 1.40E-52 | -1.69E-46 |
| MS.gene060205 | MS.gene81771 | 0.804922 | 1.71E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008354 | MS.gene81771 | PPI |
| MS.gene81771 | MS.gene049677 | PPI |
| MS.gene061583 | MS.gene81771 | PPI |
| MS.gene81771 | MS.gene81804 | PPI |
| MS.gene017305 | MS.gene81771 | PPI |
| MS.gene05032 | MS.gene81771 | PPI |
| MS.gene81771 | MS.gene05033 | PPI |
| MS.gene26200 | MS.gene81771 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81771.t1 | MTR_1g058560 | 98.462 | 195 | 3 | 0 | 1 | 195 | 1 | 195 | 6.17e-138 | 383 |
| MS.gene81771.t1 | MTR_1g058540 | 81.633 | 196 | 35 | 1 | 1 | 195 | 1 | 196 | 6.87e-100 | 287 |
| MS.gene81771.t1 | MTR_1g058570 | 88.205 | 195 | 22 | 1 | 1 | 195 | 1 | 194 | 1.32e-99 | 286 |
| MS.gene81771.t1 | MTR_2g086740 | 60.694 | 173 | 68 | 0 | 22 | 194 | 47 | 219 | 7.52e-59 | 184 |
| MS.gene81771.t1 | MTR_7g011090 | 52.941 | 170 | 80 | 0 | 26 | 195 | 17 | 186 | 4.19e-56 | 176 |
| MS.gene81771.t1 | MTR_4g081880 | 42.932 | 191 | 103 | 2 | 4 | 194 | 2 | 186 | 6.88e-51 | 162 |
| MS.gene81771.t1 | MTR_5g041900 | 48.503 | 167 | 86 | 0 | 29 | 195 | 20 | 186 | 5.07e-45 | 147 |
| MS.gene81771.t1 | MTR_2g086740 | 63.462 | 104 | 38 | 0 | 22 | 125 | 47 | 150 | 2.23e-34 | 119 |
| MS.gene81771.t1 | MTR_0004s0210 | 37.419 | 155 | 84 | 4 | 36 | 188 | 7 | 150 | 5.21e-21 | 85.5 |
| MS.gene81771.t1 | MTR_0097s0070 | 33.898 | 118 | 76 | 2 | 72 | 188 | 69 | 185 | 6.44e-14 | 67.4 |
| MS.gene81771.t1 | MTR_4g118800 | 30.833 | 120 | 82 | 1 | 74 | 192 | 62 | 181 | 1.86e-12 | 63.2 |
| MS.gene81771.t1 | MTR_8g089300 | 29.487 | 156 | 101 | 3 | 41 | 188 | 30 | 184 | 1.90e-12 | 63.5 |
| MS.gene81771.t1 | MTR_7g108130 | 27.742 | 155 | 109 | 2 | 36 | 188 | 28 | 181 | 2.47e-12 | 63.2 |
| MS.gene81771.t1 | MTR_3g064310 | 32.203 | 118 | 77 | 2 | 75 | 192 | 77 | 191 | 3.08e-12 | 63.2 |
| MS.gene81771.t1 | MTR_5g076480 | 34.483 | 116 | 72 | 3 | 75 | 189 | 69 | 181 | 4.25e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81771.t1 | AT2G36100 | 56.863 | 204 | 76 | 3 | 2 | 195 | 5 | 206 | 1.27e-70 | 213 |
| MS.gene81771.t1 | AT3G11550 | 62.189 | 201 | 68 | 3 | 2 | 195 | 5 | 204 | 3.20e-64 | 197 |
| MS.gene81771.t1 | AT5G06200 | 61.616 | 198 | 70 | 3 | 2 | 194 | 5 | 201 | 1.02e-63 | 196 |
| MS.gene81771.t1 | AT2G27370 | 51.724 | 203 | 83 | 2 | 7 | 194 | 17 | 219 | 1.99e-62 | 193 |
| MS.gene81771.t1 | AT5G15290 | 44.828 | 174 | 86 | 1 | 2 | 175 | 3 | 166 | 1.91e-49 | 159 |
| MS.gene81771.t1 | AT1G14160 | 41.212 | 165 | 97 | 0 | 31 | 195 | 45 | 209 | 3.99e-44 | 146 |
| MS.gene81771.t1 | AT1G03700 | 32.886 | 149 | 91 | 2 | 40 | 188 | 12 | 151 | 2.50e-19 | 81.3 |
| MS.gene81771.t1 | AT1G17200 | 27.660 | 188 | 124 | 4 | 9 | 192 | 2 | 181 | 2.00e-16 | 74.3 |
| MS.gene81771.t1 | AT4G03540 | 33.058 | 121 | 72 | 2 | 56 | 176 | 28 | 139 | 2.31e-15 | 70.9 |
| MS.gene81771.t1 | AT5G44550 | 33.951 | 162 | 95 | 4 | 41 | 194 | 22 | 179 | 2.68e-15 | 71.2 |
| MS.gene81771.t1 | AT3G06390 | 30.075 | 133 | 88 | 2 | 37 | 164 | 37 | 169 | 2.78e-13 | 65.9 |
| MS.gene81771.t1 | AT4G15630 | 26.601 | 203 | 118 | 6 | 2 | 192 | 6 | 189 | 7.74e-12 | 61.6 |
| MS.gene81771.t1 | AT4G15610 | 26.144 | 153 | 107 | 3 | 28 | 175 | 20 | 171 | 8.02e-12 | 61.6 |
Find 40 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCATCCTCCTGGCCTTGC+AGG | 0.176057 | 1.3:+43254749 | None:intergenic |
| CTTGCCATTTGCAACCAATT+TGG | 0.187527 | 1.3:-43253753 | MS.gene81771:CDS |
| TGATTCTTGAATATCAATTT+TGG | 0.211847 | 1.3:+43254811 | None:intergenic |
| GTGATGTCTGCCTTGGCTAT+TGG | 0.255520 | 1.3:-43253657 | MS.gene81771:CDS |
| GGCTATAGTGGCTGGCTATT+TGG | 0.277845 | 1.3:-43254395 | MS.gene81771:CDS |
| TGATGTCTGCCTTGGCTATT+GGG | 0.286725 | 1.3:-43253656 | MS.gene81771:CDS |
| CCTTAAAATGAAATCCATTA+TGG | 0.301071 | 1.3:+43254715 | None:intergenic |
| TACTAAAGGAAAAGCTGTTT+TGG | 0.315060 | 1.3:-43254780 | MS.gene81771:CDS |
| ATGATGGCTACTATAGAAAA+AGG | 0.348696 | 1.3:+43254361 | None:intergenic |
| AAGGCCAGGAGGATGGAAAA+AGG | 0.353235 | 1.3:-43254744 | MS.gene81771:CDS |
| TCTTATTGCAATGGCTATAG+TGG | 0.369985 | 1.3:-43254407 | MS.gene81771:CDS |
| TCTTGCCGCTGCCGCCTCGA+TGG | 0.384071 | 1.3:-43254672 | MS.gene81771:CDS |
| AGCTGCTTCCATAGTTTACT+TGG | 0.385601 | 1.3:-43253805 | MS.gene81771:CDS |
| CTTGCCGCTGCCGCCTCGAT+GGG | 0.402133 | 1.3:-43254671 | MS.gene81771:CDS |
| ATCATACGTCCCCATGCAAC+TGG | 0.403133 | 1.3:-43254343 | MS.gene81771:CDS |
| ATGGAAATCAAGACACAAAC+TGG | 0.422312 | 1.3:-43253776 | MS.gene81771:CDS |
| AGCGGCAAGAGCTGCTGCTA+TGG | 0.432197 | 1.3:+43254685 | None:intergenic |
| ATCTCCAAATTGGTTGCAAA+TGG | 0.439108 | 1.3:+43253749 | None:intergenic |
| GTTGGTTGTGATGTCTGCCT+TGG | 0.449789 | 1.3:-43253664 | MS.gene81771:CDS |
| GTTGCAGCACCTGCAAGGCC+AGG | 0.457764 | 1.3:-43254758 | MS.gene81771:CDS |
| CACCTGCAAGGCCAGGAGGA+TGG | 0.475215 | 1.3:-43254751 | MS.gene81771:CDS |
| ATTGCAGGTATTTCTTACTC+TGG | 0.476475 | 1.3:-43253847 | MS.gene81771:intron |
| AGTTGCATGGGGACGTATGA+TGG | 0.492360 | 1.3:+43254345 | None:intergenic |
| ATTGTGTGCCAAGTAAACTA+TGG | 0.493367 | 1.3:+43253797 | None:intergenic |
| AATGTTACATACTGGAATGC+AGG | 0.494232 | 1.3:+43254581 | None:intergenic |
| AAGCCTTGGTCCAGTTGCAT+GGG | 0.503885 | 1.3:+43254333 | None:intergenic |
| TGTTCCCATCGAGGCGGCAG+CGG | 0.517932 | 1.3:+43254667 | None:intergenic |
| ATAGAGAGCTTACGGTGTCT+AGG | 0.520494 | 1.3:+43254299 | None:intergenic |
| AAAGCCTTGGTCCAGTTGCA+TGG | 0.525434 | 1.3:+43254332 | None:intergenic |
| ATTGCAATGGCTATAGTGGC+TGG | 0.542648 | 1.3:-43254403 | MS.gene81771:CDS |
| GAATCAAGCAAAGATACTAA+AGG | 0.552945 | 1.3:-43254794 | MS.gene81771:CDS |
| ACAGACAAGTGGAGCAGTTG+TGG | 0.555649 | 1.3:-43253718 | MS.gene81771:CDS |
| TGTGGCATCATTTATTACTG+TGG | 0.599611 | 1.3:-43253700 | MS.gene81771:CDS |
| TCAATGCTTCCCAATAGCCA+AGG | 0.611842 | 1.3:+43253647 | None:intergenic |
| ATAGTTTACTTGGCACACAA+TGG | 0.619739 | 1.3:-43253795 | MS.gene81771:CDS |
| GCAGCACCTGCAAGGCCAGG+AGG | 0.636977 | 1.3:-43254755 | MS.gene81771:CDS |
| ATCACTTGTTCCCATCGAGG+CGG | 0.653937 | 1.3:+43254661 | None:intergenic |
| AGCCTTGGTCCAGTTGCATG+GGG | 0.659858 | 1.3:+43254334 | None:intergenic |
| TTGATCACTTGTTCCCATCG+AGG | 0.661241 | 1.3:+43254658 | None:intergenic |
| GTCCCCATGCAACTGGACCA+AGG | 0.673252 | 1.3:-43254336 | MS.gene81771:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTCTTAAAAAAAAAAAATT+AGG | - | chr1.3:43254531-43254550 | MS.gene81771:intron | 10.0% |
| !! | TTAAAAAAAAAAAATTAGGT+GGG | - | chr1.3:43254535-43254554 | MS.gene81771:intron | 10.0% |
| !! | CTTAAAAAAAAAAAATTAGG+TGG | - | chr1.3:43254534-43254553 | MS.gene81771:intron | 15.0% |
| !! | CTCAAATATAAGTAAAAGTT+AGG | - | chr1.3:43254243-43254262 | MS.gene81771:intron | 20.0% |
| !!! | GATGTATTTAATTCAACTTT+TGG | + | chr1.3:43254293-43254312 | None:intergenic | 20.0% |
| !!! | TGATTCTTGAATATCAATTT+TGG | + | chr1.3:43253657-43253676 | None:intergenic | 20.0% |
| !!! | TTAGTTATGATTTTTCTTTG+TGG | - | chr1.3:43254587-43254606 | MS.gene81771:intron | 20.0% |
| ! | CCTTAAAATGAAATCCATTA+TGG | + | chr1.3:43253753-43253772 | None:intergenic | 25.0% |
| ! | TTCTAAGTCACATATAAGAT+CGG | - | chr1.3:43253929-43253948 | MS.gene81771:intron | 25.0% |
| !!! | ATGGATTTCATTTTAAGGTT+AGG | - | chr1.3:43253755-43253774 | MS.gene81771:CDS | 25.0% |
| !!! | CCATAATGGATTTCATTTTA+AGG | - | chr1.3:43253750-43253769 | MS.gene81771:CDS | 25.0% |
| !!! | CTTTTACTTATATTTGAGAC+TGG | + | chr1.3:43254241-43254260 | None:intergenic | 25.0% |
| !!! | TTATGATTTTTCAATCCACT+TGG | - | chr1.3:43254410-43254429 | MS.gene81771:CDS | 25.0% |
| AAAAAAAAAATTAGGTGGGC+TGG | - | chr1.3:43254539-43254558 | MS.gene81771:intron | 30.0% | |
| ACTTAATGCTTGAAAAATGC+AGG | - | chr1.3:43254030-43254049 | MS.gene81771:intron | 30.0% | |
| ATGATGGCTACTATAGAAAA+AGG | + | chr1.3:43254107-43254126 | None:intergenic | 30.0% | |
| GAATCAAGCAAAGATACTAA+AGG | - | chr1.3:43253671-43253690 | MS.gene81771:CDS | 30.0% | |
| GTTAGAAAATAGAGAGCTTA+CGG | + | chr1.3:43254177-43254196 | None:intergenic | 30.0% | |
| ! | TACTAAAGGAAAAGCTGTTT+TGG | - | chr1.3:43253685-43253704 | MS.gene81771:CDS | 30.0% |
| ! | TACTTATATTTGAGACTGGA+GGG | + | chr1.3:43254237-43254256 | None:intergenic | 30.0% |
| ! | TTACTTATATTTGAGACTGG+AGG | + | chr1.3:43254238-43254257 | None:intergenic | 30.0% |
| !! | ATTTTTCAATCCACTTGGAT+TGG | - | chr1.3:43254415-43254434 | MS.gene81771:CDS | 30.0% |
| !!! | CAGGTTTTTTCTTATTGCAA+TGG | - | chr1.3:43254049-43254068 | MS.gene81771:intron | 30.0% |
| !!! | GAGTTTTGAATGTTACATAC+TGG | + | chr1.3:43253895-43253914 | None:intergenic | 30.0% |
| !!! | TGTGGTTGTTTTAATCTTGT+TGG | - | chr1.3:43254783-43254802 | MS.gene81771:CDS | 30.0% |
| AATGTTACATACTGGAATGC+AGG | + | chr1.3:43253887-43253906 | None:intergenic | 35.0% | |
| ATAGTTTACTTGGCACACAA+TGG | - | chr1.3:43254670-43254689 | MS.gene81771:CDS | 35.0% | |
| ATCTCCAAATTGGTTGCAAA+TGG | + | chr1.3:43254719-43254738 | None:intergenic | 35.0% | |
| ATGGAAATCAAGACACAAAC+TGG | - | chr1.3:43254689-43254708 | MS.gene81771:CDS | 35.0% | |
| ATTGCAGGTATTTCTTACTC+TGG | - | chr1.3:43254618-43254637 | MS.gene81771:CDS | 35.0% | |
| ATTGTGTGCCAAGTAAACTA+TGG | + | chr1.3:43254671-43254690 | None:intergenic | 35.0% | |
| CTAACTCTCGATCATTTCTT+TGG | - | chr1.3:43254192-43254211 | MS.gene81771:intron | 35.0% | |
| GTGCACAAAAATCTCCAAAT+TGG | + | chr1.3:43254729-43254748 | None:intergenic | 35.0% | |
| TAGATGTTTACTACTCGCTT+CGG | + | chr1.3:43254352-43254371 | None:intergenic | 35.0% | |
| TCTTATTGCAATGGCTATAG+TGG | - | chr1.3:43254058-43254077 | MS.gene81771:intron | 35.0% | |
| TGTGGCATCATTTATTACTG+TGG | - | chr1.3:43254765-43254784 | MS.gene81771:CDS | 35.0% | |
| TTTGTGGTGCTTATAATTGC+AGG | - | chr1.3:43254603-43254622 | MS.gene81771:CDS | 35.0% | |
| ! | ACTTATATTTGAGACTGGAG+GGG | + | chr1.3:43254236-43254255 | None:intergenic | 35.0% |
| AGCTGCTTCCATAGTTTACT+TGG | - | chr1.3:43254660-43254679 | MS.gene81771:CDS | 40.0% | |
| AGGATGATGAGAAAAAGCCT+TGG | + | chr1.3:43254149-43254168 | None:intergenic | 40.0% | |
| ATTCTCTCCAGTGCCAATTT+AGG | - | chr1.3:43254495-43254514 | MS.gene81771:intron | 40.0% | |
| TTAAACCAGCCCACCTAAAT+TGG | + | chr1.3:43254511-43254530 | None:intergenic | 40.0% | |
| TTATGCTAATACTAGCGTGC+AGG | + | chr1.3:43254386-43254405 | None:intergenic | 40.0% | |
| ! | CTTATATTTGAGACTGGAGG+GGG | + | chr1.3:43254235-43254254 | None:intergenic | 40.0% |
| ! | CTTGCCATTTGCAACCAATT+TGG | - | chr1.3:43254712-43254731 | MS.gene81771:CDS | 40.0% |
| ! | GAAAAAGGGCATAGCCATAA+TGG | - | chr1.3:43253736-43253755 | MS.gene81771:CDS | 40.0% |
| ! | GATTTTTGTGCACAGACAAG+TGG | - | chr1.3:43254736-43254755 | MS.gene81771:CDS | 40.0% |
| !! | GTGGTATTGACTTGTGATCT+GGG | - | chr1.3:43254442-43254461 | MS.gene81771:intron | 40.0% |
| ATAGAGAGCTTACGGTGTCT+AGG | + | chr1.3:43254169-43254188 | None:intergenic | 45.0% | |
| ATTGCAATGGCTATAGTGGC+TGG | - | chr1.3:43254062-43254081 | MS.gene81771:intron | 45.0% | |
| GATCACAAGTCAATACCACC+AGG | + | chr1.3:43254441-43254460 | None:intergenic | 45.0% | |
| TCAATGCTTCCCAATAGCCA+AGG | + | chr1.3:43254821-43254840 | None:intergenic | 45.0% | |
| TCTCCAGTGCCAATTTAGGT+GGG | - | chr1.3:43254499-43254518 | MS.gene81771:intron | 45.0% | |
| TGATGTCTGCCTTGGCTATT+GGG | - | chr1.3:43254809-43254828 | MS.gene81771:CDS | 45.0% | |
| TTGATCACTTGTTCCCATCG+AGG | + | chr1.3:43253810-43253829 | None:intergenic | 45.0% | |
| !! | GGTGGTATTGACTTGTGATC+TGG | - | chr1.3:43254441-43254460 | MS.gene81771:intron | 45.0% |
| AAAGCCTTGGTCCAGTTGCA+TGG | + | chr1.3:43254136-43254155 | None:intergenic | 50.0% | |
| AAGCCTTGGTCCAGTTGCAT+GGG | + | chr1.3:43254135-43254154 | None:intergenic | 50.0% | |
| AAGGCCAGGAGGATGGAAAA+AGG | - | chr1.3:43253721-43253740 | MS.gene81771:CDS | 50.0% | |
| ACAGACAAGTGGAGCAGTTG+TGG | - | chr1.3:43254747-43254766 | MS.gene81771:CDS | 50.0% | |
| AGGCCAGGAGGATGGAAAAA+GGG | - | chr1.3:43253722-43253741 | MS.gene81771:CDS | 50.0% | |
| AGTTGCATGGGGACGTATGA+TGG | + | chr1.3:43254123-43254142 | None:intergenic | 50.0% | |
| ATCACTTGTTCCCATCGAGG+CGG | + | chr1.3:43253807-43253826 | None:intergenic | 50.0% | |
| ATCATACGTCCCCATGCAAC+TGG | - | chr1.3:43254122-43254141 | MS.gene81771:intron | 50.0% | |
| CTCTCCAGTGCCAATTTAGG+TGG | - | chr1.3:43254498-43254517 | MS.gene81771:intron | 50.0% | |
| GTGATGTCTGCCTTGGCTAT+TGG | - | chr1.3:43254808-43254827 | MS.gene81771:CDS | 50.0% | |
| GTTGGTTGTGATGTCTGCCT+TGG | - | chr1.3:43254801-43254820 | MS.gene81771:CDS | 50.0% | |
| ! | ATGCCCTTTTTCCATCCTCC+TGG | + | chr1.3:43253728-43253747 | None:intergenic | 50.0% |
| ! | GGCTATAGTGGCTGGCTATT+TGG | - | chr1.3:43254070-43254089 | MS.gene81771:intron | 50.0% |
| !! | TCAATCCACTTGGATTGGCC+TGG | - | chr1.3:43254420-43254439 | MS.gene81771:intron | 50.0% |
| !! | TTTTGGTTGCAGCACCTGCA+AGG | - | chr1.3:43253702-43253721 | MS.gene81771:CDS | 50.0% |
| AGCCTTGGTCCAGTTGCATG+GGG | + | chr1.3:43254134-43254153 | None:intergenic | 55.0% | |
| CAGCCCACCTAAATTGGCAC+TGG | + | chr1.3:43254505-43254524 | None:intergenic | 55.0% | |
| CAGTGCCAATTTAGGTGGGC+TGG | - | chr1.3:43254503-43254522 | MS.gene81771:intron | 55.0% | |
| GAATCGAACCTGAGACCTCG+AGG | + | chr1.3:43254479-43254498 | None:intergenic | 55.0% | |
| TACCACCAGGCCAATCCAAG+TGG | + | chr1.3:43254428-43254447 | None:intergenic | 55.0% | |
| !! | ATCCACTTGGATTGGCCTGG+TGG | - | chr1.3:43254423-43254442 | MS.gene81771:intron | 55.0% |
| AGCGGCAAGAGCTGCTGCTA+TGG | + | chr1.3:43253783-43253802 | None:intergenic | 60.0% | |
| GTCCCCATGCAACTGGACCA+AGG | - | chr1.3:43254129-43254148 | MS.gene81771:intron | 60.0% | |
| TCGAACCTGAGACCTCGAGG+AGG | + | chr1.3:43254476-43254495 | None:intergenic | 60.0% | |
| !! | TTCCATCCTCCTGGCCTTGC+AGG | + | chr1.3:43253719-43253738 | None:intergenic | 60.0% |
| CACCTGCAAGGCCAGGAGGA+TGG | - | chr1.3:43253714-43253733 | MS.gene81771:CDS | 65.0% | |
| GTGCTCCTCCTCGAGGTCTC+AGG | - | chr1.3:43254468-43254487 | MS.gene81771:intron | 65.0% | |
| GTTGCAGCACCTGCAAGGCC+AGG | - | chr1.3:43253707-43253726 | MS.gene81771:CDS | 65.0% | |
| TGTTCCCATCGAGGCGGCAG+CGG | + | chr1.3:43253801-43253820 | None:intergenic | 65.0% | |
| ! | TGGGAGTGTGCTCCTCCTCG+AGG | - | chr1.3:43254461-43254480 | MS.gene81771:intron | 65.0% |
| CTTGCCGCTGCCGCCTCGAT+GGG | - | chr1.3:43253794-43253813 | MS.gene81771:CDS | 70.0% | |
| GCAGCACCTGCAAGGCCAGG+AGG | - | chr1.3:43253710-43253729 | MS.gene81771:CDS | 70.0% | |
| TCTTGCCGCTGCCGCCTCGA+TGG | - | chr1.3:43253793-43253812 | MS.gene81771:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 43253647 | 43254840 | 43253647 | ID=MS.gene81771 |
| chr1.3 | mRNA | 43253647 | 43254840 | 43253647 | ID=MS.gene81771.t1;Parent=MS.gene81771 |
| chr1.3 | exon | 43254593 | 43254840 | 43254593 | ID=MS.gene81771.t1.exon1;Parent=MS.gene81771.t1 |
| chr1.3 | CDS | 43254593 | 43254840 | 43254593 | ID=cds.MS.gene81771.t1;Parent=MS.gene81771.t1 |
| chr1.3 | exon | 43254312 | 43254435 | 43254312 | ID=MS.gene81771.t1.exon2;Parent=MS.gene81771.t1 |
| chr1.3 | CDS | 43254312 | 43254435 | 43254312 | ID=cds.MS.gene81771.t1;Parent=MS.gene81771.t1 |
| chr1.3 | exon | 43253647 | 43253862 | 43253647 | ID=MS.gene81771.t1.exon3;Parent=MS.gene81771.t1 |
| chr1.3 | CDS | 43253647 | 43253862 | 43253647 | ID=cds.MS.gene81771.t1;Parent=MS.gene81771.t1 |
| Gene Sequence |
| Protein sequence |
