Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065724.t1 | XP_013467943.1 | 96.4 | 196 | 7 | 0 | 1 | 196 | 1 | 196 | 8.50E-93 | 349.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065724.t1 | P0DI40 | 78.6 | 196 | 38 | 1 | 1 | 196 | 1 | 192 | 1.1e-77 | 290.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065724.t1 | A0A072VV58 | 96.4 | 196 | 7 | 0 | 1 | 196 | 1 | 196 | 6.1e-93 | 349.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene065724 | 0.831838 | 1.33E-55 | -1.69E-46 |
| MS.gene049549 | MS.gene065724 | 0.849059 | 4.12E-60 | -1.69E-46 |
| MS.gene049611 | MS.gene065724 | 0.80535 | 1.39E-49 | -1.69E-46 |
| MS.gene050133 | MS.gene065724 | 0.80085 | 1.19E-48 | -1.69E-46 |
| MS.gene05104 | MS.gene065724 | 0.818436 | 1.96E-52 | -1.69E-46 |
| MS.gene051131 | MS.gene065724 | 0.82171 | 3.49E-53 | -1.69E-46 |
| MS.gene051385 | MS.gene065724 | 0.80872 | 2.70E-50 | -1.69E-46 |
| MS.gene051439 | MS.gene065724 | 0.816382 | 5.69E-52 | -1.69E-46 |
| MS.gene051996 | MS.gene065724 | 0.825743 | 3.97E-54 | -1.69E-46 |
| MS.gene052211 | MS.gene065724 | 0.832646 | 8.40E-56 | -1.69E-46 |
| MS.gene052223 | MS.gene065724 | 0.825483 | 4.57E-54 | -1.69E-46 |
| MS.gene05240 | MS.gene065724 | 0.887055 | 2.00E-72 | -1.69E-46 |
| MS.gene05244 | MS.gene065724 | 0.815002 | 1.16E-51 | -1.69E-46 |
| MS.gene052503 | MS.gene065724 | -0.804467 | 2.13E-49 | -1.69E-46 |
| MS.gene052702 | MS.gene065724 | 0.808637 | 2.81E-50 | -1.69E-46 |
| MS.gene052705 | MS.gene065724 | 0.817011 | 4.11E-52 | -1.69E-46 |
| MS.gene052706 | MS.gene065724 | 0.822852 | 1.90E-53 | -1.69E-46 |
| MS.gene052823 | MS.gene065724 | -0.807725 | 4.39E-50 | -1.69E-46 |
| MS.gene053406 | MS.gene065724 | 0.810669 | 1.03E-50 | -1.69E-46 |
| MS.gene053479 | MS.gene065724 | -0.810606 | 1.06E-50 | -1.69E-46 |
| MS.gene054107 | MS.gene065724 | -0.806661 | 7.38E-50 | -1.69E-46 |
| MS.gene054120 | MS.gene065724 | 0.800691 | 1.28E-48 | -1.69E-46 |
| MS.gene054138 | MS.gene065724 | 0.81998 | 8.73E-53 | -1.69E-46 |
| MS.gene054146 | MS.gene065724 | 0.822639 | 2.13E-53 | -1.69E-46 |
| MS.gene054147 | MS.gene065724 | 0.811247 | 7.70E-51 | -1.69E-46 |
| MS.gene054277 | MS.gene065724 | 0.874939 | 4.56E-68 | -1.69E-46 |
| MS.gene054421 | MS.gene065724 | 0.804499 | 2.10E-49 | -1.69E-46 |
| MS.gene054742 | MS.gene065724 | 0.896921 | 2.32E-76 | -1.69E-46 |
| MS.gene055215 | MS.gene065724 | 0.828074 | 1.10E-54 | -1.69E-46 |
| MS.gene055240 | MS.gene065724 | 0.816829 | 4.52E-52 | -1.69E-46 |
| MS.gene056076 | MS.gene065724 | 0.822635 | 2.13E-53 | -1.69E-46 |
| MS.gene056330 | MS.gene065724 | 0.861342 | 1.10E-63 | -1.69E-46 |
| MS.gene056359 | MS.gene065724 | 0.808401 | 3.15E-50 | -1.69E-46 |
| MS.gene056590 | MS.gene065724 | 0.839886 | 1.21E-57 | -1.69E-46 |
| MS.gene056591 | MS.gene065724 | 0.838562 | 2.67E-57 | -1.69E-46 |
| MS.gene056680 | MS.gene065724 | 0.811131 | 8.16E-51 | -1.69E-46 |
| MS.gene056690 | MS.gene065724 | 0.802697 | 4.96E-49 | -1.69E-46 |
| MS.gene056697 | MS.gene065724 | 0.809741 | 1.63E-50 | -1.69E-46 |
| MS.gene056715 | MS.gene065724 | 0.808103 | 3.65E-50 | -1.69E-46 |
| MS.gene056748 | MS.gene065724 | 0.810771 | 9.77E-51 | -1.69E-46 |
| MS.gene056920 | MS.gene065724 | 0.929071 | 1.17E-92 | -1.69E-46 |
| MS.gene056922 | MS.gene065724 | 0.864241 | 1.40E-64 | -1.69E-46 |
| MS.gene056923 | MS.gene065724 | 0.868258 | 7.46E-66 | -1.69E-46 |
| MS.gene056924 | MS.gene065724 | 0.8487 | 5.19E-60 | -1.69E-46 |
| MS.gene056925 | MS.gene065724 | 0.826823 | 2.20E-54 | -1.69E-46 |
| MS.gene057048 | MS.gene065724 | -0.800059 | 1.72E-48 | -1.69E-46 |
| MS.gene057261 | MS.gene065724 | 0.831733 | 1.41E-55 | -1.69E-46 |
| MS.gene057544 | MS.gene065724 | 0.839618 | 1.42E-57 | -1.69E-46 |
| MS.gene057547 | MS.gene065724 | 0.821536 | 3.83E-53 | -1.69E-46 |
| MS.gene057550 | MS.gene065724 | 0.821018 | 5.05E-53 | -1.69E-46 |
| MS.gene058099 | MS.gene065724 | 0.801533 | 8.61E-49 | -1.69E-46 |
| MS.gene058381 | MS.gene065724 | 0.805641 | 1.21E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene065724 | 0.801291 | 9.65E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene065724 | 0.844256 | 8.46E-59 | -1.69E-46 |
| MS.gene059953 | MS.gene065724 | 0.822278 | 2.58E-53 | -1.69E-46 |
| MS.gene059955 | MS.gene065724 | 0.845992 | 2.87E-59 | -1.69E-46 |
| MS.gene060087 | MS.gene065724 | 0.889853 | 1.67E-73 | -1.69E-46 |
| MS.gene061092 | MS.gene065724 | 0.816254 | 6.08E-52 | -1.69E-46 |
| MS.gene061094 | MS.gene065724 | 0.823753 | 1.17E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05032 | MS.gene065724 | PPI |
| MS.gene065724 | MS.gene049677 | PPI |
| MS.gene065724 | MS.gene81804 | PPI |
| MS.gene017305 | MS.gene065724 | PPI |
| MS.gene26200 | MS.gene065724 | PPI |
| MS.gene008354 | MS.gene065724 | PPI |
| MS.gene065724 | MS.gene05033 | PPI |
| MS.gene061583 | MS.gene065724 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065724.t1 | MTR_1g058540 | 96.429 | 196 | 7 | 0 | 1 | 196 | 1 | 196 | 3.13e-136 | 379 |
| MS.gene065724.t1 | MTR_1g058570 | 77.551 | 196 | 42 | 1 | 1 | 196 | 1 | 194 | 9.87e-94 | 271 |
| MS.gene065724.t1 | MTR_1g058560 | 80.612 | 196 | 37 | 1 | 1 | 196 | 1 | 195 | 3.01e-92 | 268 |
| MS.gene065724.t1 | MTR_2g086740 | 52.381 | 210 | 84 | 1 | 2 | 195 | 10 | 219 | 7.23e-59 | 184 |
| MS.gene065724.t1 | MTR_7g011090 | 45.789 | 190 | 99 | 1 | 7 | 196 | 1 | 186 | 1.07e-52 | 167 |
| MS.gene065724.t1 | MTR_4g081880 | 42.197 | 173 | 100 | 0 | 23 | 195 | 14 | 186 | 1.79e-47 | 154 |
| MS.gene065724.t1 | MTR_5g041900 | 40.722 | 194 | 102 | 2 | 4 | 196 | 5 | 186 | 1.78e-41 | 139 |
| MS.gene065724.t1 | MTR_2g086740 | 49.645 | 141 | 55 | 1 | 2 | 126 | 10 | 150 | 6.63e-34 | 118 |
| MS.gene065724.t1 | MTR_0004s0210 | 34.615 | 156 | 87 | 4 | 37 | 189 | 7 | 150 | 4.56e-18 | 77.8 |
| MS.gene065724.t1 | MTR_0097s0070 | 34.167 | 120 | 73 | 3 | 73 | 189 | 69 | 185 | 1.73e-12 | 63.5 |
| MS.gene065724.t1 | MTR_2g026530 | 26.220 | 164 | 116 | 3 | 33 | 193 | 6 | 167 | 7.40e-11 | 58.9 |
| MS.gene065724.t1 | MTR_2g026530 | 26.220 | 164 | 116 | 3 | 33 | 193 | 26 | 187 | 8.06e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065724.t1 | AT2G36100 | 55.446 | 202 | 83 | 2 | 2 | 196 | 5 | 206 | 9.64e-69 | 209 |
| MS.gene065724.t1 | AT3G11550 | 60.500 | 200 | 74 | 1 | 2 | 196 | 5 | 204 | 1.71e-64 | 197 |
| MS.gene065724.t1 | AT2G27370 | 56.522 | 184 | 73 | 1 | 12 | 195 | 43 | 219 | 2.17e-64 | 198 |
| MS.gene065724.t1 | AT5G06200 | 58.586 | 198 | 77 | 2 | 2 | 195 | 5 | 201 | 1.00e-63 | 196 |
| MS.gene065724.t1 | AT5G15290 | 44.000 | 150 | 84 | 0 | 27 | 176 | 17 | 166 | 5.02e-44 | 145 |
| MS.gene065724.t1 | AT1G14160 | 40.606 | 165 | 98 | 0 | 32 | 196 | 45 | 209 | 2.58e-42 | 141 |
| MS.gene065724.t1 | AT1G03700 | 30.769 | 169 | 99 | 3 | 21 | 189 | 1 | 151 | 2.05e-17 | 76.3 |
| MS.gene065724.t1 | AT1G17200 | 26.455 | 189 | 126 | 5 | 9 | 193 | 2 | 181 | 5.95e-14 | 67.8 |
| MS.gene065724.t1 | AT4G03540 | 32.258 | 124 | 75 | 2 | 55 | 178 | 26 | 140 | 1.19e-13 | 66.2 |
| MS.gene065724.t1 | AT4G15630 | 26.816 | 179 | 111 | 5 | 27 | 193 | 19 | 189 | 4.02e-11 | 59.7 |
| MS.gene065724.t1 | AT3G06390 | 27.820 | 133 | 91 | 2 | 38 | 165 | 37 | 169 | 5.83e-11 | 59.7 |
Find 42 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCCATTTGCAACCAATT+TGG | 0.187527 | 1.2:-45956023 | MS.gene065724:CDS |
| GTGATGTCTGCTTTGGCTCT+TGG | 0.283856 | 1.2:-45955927 | MS.gene065724:CDS |
| TCTTAGAACAAAATCCATTA+TGG | 0.318159 | 1.2:+45957087 | None:intergenic |
| ATGATGGTTACTATGGAAAA+TGG | 0.329026 | 1.2:+45956678 | None:intergenic |
| TGATGTCTGCTTTGGCTCTT+GGG | 0.345325 | 1.2:-45955926 | MS.gene065724:CDS |
| AGCAGCTGCCATGGTTTACT+TGG | 0.359773 | 1.2:-45956075 | MS.gene065724:CDS |
| GTTGGTTGTGATGTCTGCTT+TGG | 0.399140 | 1.2:-45955934 | MS.gene065724:CDS |
| GGCATTTGTGGGTGGCTACC+TGG | 0.401958 | 1.2:-45956712 | MS.gene065724:CDS |
| AATGTCAACCACTATTGATA+TGG | 0.415102 | 1.2:-45957194 | MS.gene065724:CDS |
| AGGGCGAATGATGGTTACTA+TGG | 0.422728 | 1.2:+45956671 | None:intergenic |
| CATAACTAGCTTCAAATTGA+AGG | 0.426220 | 1.2:+45956984 | None:intergenic |
| ATTGGAGCCACTGCAAGGCC+TGG | 0.429435 | 1.2:-45957130 | MS.gene065724:CDS |
| ACGGCAATCAAGACTCAAAC+TGG | 0.435689 | 1.2:-45956046 | MS.gene065724:CDS |
| ATCTCCAAATTGGTTGCAAA+TGG | 0.439108 | 1.2:+45956019 | None:intergenic |
| TGTTATTGCAATGGCATTTG+TGG | 0.446696 | 1.2:-45956724 | MS.gene065724:CDS |
| GTTATTGCAATGGCATTTGT+GGG | 0.458726 | 1.2:-45956723 | MS.gene065724:CDS |
| ATCATTCGCCCTCATGCACC+TGG | 0.484461 | 1.2:-45956660 | MS.gene065724:CDS |
| TGGTTACTATGGAAAATGGT+AGG | 0.486275 | 1.2:+45956682 | None:intergenic |
| TGGTGCTTCAGCAGCTGCCA+TGG | 0.489524 | 1.2:-45956084 | MS.gene065724:CDS |
| TGAAGGAACTGAGTGAAGAA+AGG | 0.493692 | 1.2:+45957001 | None:intergenic |
| TGACTCTGCCATATCAATAG+TGG | 0.510355 | 1.2:+45957186 | None:intergenic |
| CCACTGCAAGGCCTGGAGGA+TGG | 0.524990 | 1.2:-45957123 | MS.gene065724:CDS |
| TGCAGCAAGAGAAGCTGCTA+TGG | 0.527344 | 1.2:+45957057 | None:intergenic |
| CCATCCTCCAGGCCTTGCAG+TGG | 0.532661 | 1.2:+45957123 | None:intergenic |
| ATGAGGAAAAGCCTTGGTCC+AGG | 0.542585 | 1.2:+45956642 | None:intergenic |
| CTTTAATTGGAGCCACTGCA+AGG | 0.554612 | 1.2:-45957135 | MS.gene065724:CDS |
| GGTTACTATGGAAAATGGTA+GGG | 0.561081 | 1.2:+45956683 | None:intergenic |
| AGCCTTGGTCCAGGTGCATG+AGG | 0.573726 | 1.2:+45956651 | None:intergenic |
| AGGTGCATGAGGGCGAATGA+TGG | 0.573876 | 1.2:+45956662 | None:intergenic |
| GCCCTCATGCACCTGGACCA+AGG | 0.587519 | 1.2:-45956653 | MS.gene065724:CDS |
| TGCTGAAGCACCACTAGCAG+TGG | 0.592321 | 1.2:+45956094 | None:intergenic |
| AATCTGATCACTAGTTGCCA+TGG | 0.596028 | 1.2:+45957027 | None:intergenic |
| ATTGCAATGGCATTTGTGGG+TGG | 0.596308 | 1.2:-45956720 | MS.gene065724:CDS |
| ATGACATTAGCCACTGCTAG+TGG | 0.602800 | 1.2:-45956104 | MS.gene065724:CDS |
| GCGATGATGAGGAAAAGCCT+TGG | 0.613791 | 1.2:+45956636 | None:intergenic |
| GCCTTGGTCCAGGTGCATGA+GGG | 0.623258 | 1.2:+45956652 | None:intergenic |
| ATGGTTTACTTGGCACACAA+CGG | 0.636706 | 1.2:-45956065 | MS.gene065724:CDS |
| GGAGCCACTGCAAGGCCTGG+AGG | 0.665040 | 1.2:-45957127 | MS.gene065724:CDS |
| TTACTGTGTCTGCGATGATG+AGG | 0.667059 | 1.2:+45956625 | None:intergenic |
| TCTTGCTGCAACTATCACCA+TGG | 0.694318 | 1.2:-45957044 | MS.gene065724:CDS |
| AAAATGGTAGGGATAAGACC+AGG | 0.708096 | 1.2:+45956694 | None:intergenic |
| GTTGTGTGCCAAGTAAACCA+TGG | 0.790091 | 1.2:+45956067 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATCAATAAAGCAA+TGG | + | chr1.2:45956675-45956694 | None:intergenic | 15.0% |
| !! | ACTCTAATTAAGAATTAATT+AGG | + | chr1.2:45956526-45956545 | None:intergenic | 15.0% |
| !! | TAAGAATTAATTAGGAAATT+AGG | + | chr1.2:45956518-45956537 | None:intergenic | 15.0% |
| !! | TCATGTAAAAAAAATTTGAA+GGG | + | chr1.2:45956569-45956588 | None:intergenic | 15.0% |
| !! | TTCATGTAAAAAAAATTTGA+AGG | + | chr1.2:45956570-45956589 | None:intergenic | 15.0% |
| !!! | AAATTATTTGTTTAAGTTAG+AGG | + | chr1.2:45956187-45956206 | None:intergenic | 15.0% |
| !! | AATGTTTATTGTAAATATGC+AGG | - | chr1.2:45956358-45956377 | MS.gene065724:intron | 20.0% |
| !! | ATGAACATATATATTCTAGT+AGG | - | chr1.2:45956585-45956604 | MS.gene065724:intron | 20.0% |
| !!! | GTTAAGTACTTTTAAAAAAC+TGG | - | chr1.2:45956867-45956886 | MS.gene065724:intron | 20.0% |
| ! | GGTCATTTGAAAATAAATAG+AGG | + | chr1.2:45956654-45956673 | None:intergenic | 25.0% |
| ! | TCTTAGAACAAAATCCATTA+TGG | + | chr1.2:45956026-45956045 | None:intergenic | 25.0% |
| !! | AATGAAAAAGCTGCTTTAAT+TGG | - | chr1.2:45955962-45955981 | MS.gene065724:CDS | 25.0% |
| !!! | ATGGATTTTGTTCTAAGATT+AGG | - | chr1.2:45956028-45956047 | MS.gene065724:CDS | 25.0% |
| AATGAGGAAATGAACTATGA+AGG | - | chr1.2:45956788-45956807 | MS.gene065724:intron | 30.0% | |
| ATGAGGAAATGAACTATGAA+GGG | - | chr1.2:45956789-45956808 | MS.gene065724:intron | 30.0% | |
| ATGATGGTTACTATGGAAAA+TGG | + | chr1.2:45956435-45956454 | None:intergenic | 30.0% | |
| ATTACTCCTTGTGTTTCTTT+CGG | - | chr1.2:45956628-45956647 | MS.gene065724:intron | 30.0% | |
| GAAGATAAATTGACACAATG+AGG | - | chr1.2:45956772-45956791 | MS.gene065724:intron | 30.0% | |
| TAATGTCATAAACACCTACA+CGG | + | chr1.2:45956995-45957014 | None:intergenic | 30.0% | |
| TGGACTAAATAAATACACCT+AGG | + | chr1.2:45956232-45956251 | None:intergenic | 30.0% | |
| ! | AATACACCTAGGTTTTACAA+TGG | + | chr1.2:45956221-45956240 | None:intergenic | 30.0% |
| ! | CATAACTAGCTTCAAATTGA+AGG | + | chr1.2:45956129-45956148 | None:intergenic | 30.0% |
| ! | GTGTAGTTCAAATTTTGTGT+TGG | + | chr1.2:45956252-45956271 | None:intergenic | 30.0% |
| !!! | CAGGTTTTTTGTTATTGCAA+TGG | - | chr1.2:45956377-45956396 | MS.gene065724:intron | 30.0% |
| !!! | TATTGCTGTGGTTGTTTTAA+TGG | - | chr1.2:45957152-45957171 | MS.gene065724:CDS | 30.0% |
| ATCTCCAAATTGGTTGCAAA+TGG | + | chr1.2:45957094-45957113 | None:intergenic | 35.0% | |
| GAGGTTTAAATGTGACATAC+TGG | + | chr1.2:45956168-45956187 | None:intergenic | 35.0% | |
| GGTTACTATGGAAAATGGTA+GGG | + | chr1.2:45956430-45956449 | None:intergenic | 35.0% | |
| GTGCACAAAAATCTCCAAAT+TGG | + | chr1.2:45957104-45957123 | None:intergenic | 35.0% | |
| GTTATTGCAATGGCATTTGT+GGG | - | chr1.2:45956387-45956406 | MS.gene065724:intron | 35.0% | |
| TGGTTACTATGGAAAATGGT+AGG | + | chr1.2:45956431-45956450 | None:intergenic | 35.0% | |
| TGTTATTGCAATGGCATTTG+TGG | - | chr1.2:45956386-45956405 | MS.gene065724:intron | 35.0% | |
| ! | AAACTCAAACTTTTCCGTGT+AGG | - | chr1.2:45956978-45956997 | MS.gene065724:CDS | 35.0% |
| ! | GAAAAAAGGCATAGCCATAA+TGG | - | chr1.2:45956009-45956028 | MS.gene065724:CDS | 35.0% |
| !! | TGTGTCATGTTTTATTGCTG+TGG | - | chr1.2:45957140-45957159 | MS.gene065724:CDS | 35.0% |
| !!! | TGTGGTTGTTTTAATGGTGT+TGG | - | chr1.2:45957158-45957177 | MS.gene065724:CDS | 35.0% |
| AAAATGGTAGGGATAAGACC+AGG | + | chr1.2:45956419-45956438 | None:intergenic | 40.0% | |
| AATCTGATCACTAGTTGCCA+TGG | + | chr1.2:45956086-45956105 | None:intergenic | 40.0% | |
| ATGGTTTACTTGGCACACAA+CGG | - | chr1.2:45957045-45957064 | MS.gene065724:CDS | 40.0% | |
| TGAAGGAACTGAGTGAAGAA+AGG | + | chr1.2:45956112-45956131 | None:intergenic | 40.0% | |
| TGACTCTGCCATATCAATAG+TGG | + | chr1.2:45955927-45955946 | None:intergenic | 40.0% | |
| ! | ACACCTAGGTTTTACAATGG+AGG | + | chr1.2:45956218-45956237 | None:intergenic | 40.0% |
| ! | CACCTAGGTTTTACAATGGA+GGG | + | chr1.2:45956217-45956236 | None:intergenic | 40.0% |
| ! | CTTGCCATTTGCAACCAATT+TGG | - | chr1.2:45957087-45957106 | MS.gene065724:CDS | 40.0% |
| ! | GATTTTTGTGCACAGACAAG+TGG | - | chr1.2:45957111-45957130 | MS.gene065724:CDS | 40.0% |
| ACGGCAATCAAGACTCAAAC+TGG | - | chr1.2:45957064-45957083 | MS.gene065724:CDS | 45.0% | |
| AGGGCGAATGATGGTTACTA+TGG | + | chr1.2:45956442-45956461 | None:intergenic | 45.0% | |
| ATGACATTAGCCACTGCTAG+TGG | - | chr1.2:45957006-45957025 | MS.gene065724:CDS | 45.0% | |
| ATTGCAATGGCATTTGTGGG+TGG | - | chr1.2:45956390-45956409 | MS.gene065724:intron | 45.0% | |
| CTCCCTCCATTGTAAAACCT+AGG | - | chr1.2:45956212-45956231 | MS.gene065724:intron | 45.0% | |
| CTTTAATTGGAGCCACTGCA+AGG | - | chr1.2:45955975-45955994 | MS.gene065724:CDS | 45.0% | |
| GTTGGTTGTGATGTCTGCTT+TGG | - | chr1.2:45957176-45957195 | MS.gene065724:CDS | 45.0% | |
| GTTGTGTGCCAAGTAAACCA+TGG | + | chr1.2:45957046-45957065 | None:intergenic | 45.0% | |
| TAGAGGCCGAAAGAAACACA+AGG | + | chr1.2:45956637-45956656 | None:intergenic | 45.0% | |
| TCTTGCTGCAACTATCACCA+TGG | - | chr1.2:45956066-45956085 | MS.gene065724:CDS | 45.0% | |
| TTACTGTGTCTGCGATGATG+AGG | + | chr1.2:45956488-45956507 | None:intergenic | 45.0% | |
| !! | TGATGTCTGCTTTGGCTCTT+GGG | - | chr1.2:45957184-45957203 | MS.gene065724:CDS | 45.0% |
| !!! | ATGCCTTTTTTCCATCCTCC+AGG | + | chr1.2:45956001-45956020 | None:intergenic | 45.0% |
| AGCAGCTGCCATGGTTTACT+TGG | - | chr1.2:45957035-45957054 | MS.gene065724:CDS | 50.0% | |
| AGGCCTGGAGGATGGAAAAA+AGG | - | chr1.2:45955995-45956014 | MS.gene065724:CDS | 50.0% | |
| ATGAGGAAAAGCCTTGGTCC+AGG | + | chr1.2:45956471-45956490 | None:intergenic | 50.0% | |
| GCGATGATGAGGAAAAGCCT+TGG | + | chr1.2:45956477-45956496 | None:intergenic | 50.0% | |
| TGCAGCAAGAGAAGCTGCTA+TGG | + | chr1.2:45956056-45956075 | None:intergenic | 50.0% | |
| !! | GTGATGTCTGCTTTGGCTCT+TGG | - | chr1.2:45957183-45957202 | MS.gene065724:CDS | 50.0% |
| AGGTGCATGAGGGCGAATGA+TGG | + | chr1.2:45956451-45956470 | None:intergenic | 55.0% | |
| ATCATTCGCCCTCATGCACC+TGG | - | chr1.2:45956450-45956469 | MS.gene065724:intron | 55.0% | |
| ! | TGCTGAAGCACCACTAGCAG+TGG | + | chr1.2:45957019-45957038 | None:intergenic | 55.0% |
| AGCCTTGGTCCAGGTGCATG+AGG | + | chr1.2:45956462-45956481 | None:intergenic | 60.0% | |
| ATTGGAGCCACTGCAAGGCC+TGG | - | chr1.2:45955980-45955999 | MS.gene065724:CDS | 60.0% | |
| GCCTTGGTCCAGGTGCATGA+GGG | + | chr1.2:45956461-45956480 | None:intergenic | 60.0% | |
| GGCATTTGTGGGTGGCTACC+TGG | - | chr1.2:45956398-45956417 | MS.gene065724:intron | 60.0% | |
| TGGTGCTTCAGCAGCTGCCA+TGG | - | chr1.2:45957026-45957045 | MS.gene065724:CDS | 60.0% | |
| CCACTGCAAGGCCTGGAGGA+TGG | - | chr1.2:45955987-45956006 | MS.gene065724:CDS | 65.0% | |
| CCATCCTCCAGGCCTTGCAG+TGG | + | chr1.2:45955990-45956009 | None:intergenic | 65.0% | |
| GCCCTCATGCACCTGGACCA+AGG | - | chr1.2:45956457-45956476 | MS.gene065724:intron | 65.0% | |
| GGAGCCACTGCAAGGCCTGG+AGG | - | chr1.2:45955983-45956002 | MS.gene065724:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 45955917 | 45957215 | 45955917 | ID=MS.gene065724 |
| chr1.2 | mRNA | 45955917 | 45957215 | 45955917 | ID=MS.gene065724.t1;Parent=MS.gene065724 |
| chr1.2 | exon | 45956965 | 45957215 | 45956965 | ID=MS.gene065724.t1.exon1;Parent=MS.gene065724.t1 |
| chr1.2 | CDS | 45956965 | 45957215 | 45956965 | ID=cds.MS.gene065724.t1;Parent=MS.gene065724.t1 |
| chr1.2 | exon | 45956629 | 45956752 | 45956629 | ID=MS.gene065724.t1.exon2;Parent=MS.gene065724.t1 |
| chr1.2 | CDS | 45956629 | 45956752 | 45956629 | ID=cds.MS.gene065724.t1;Parent=MS.gene065724.t1 |
| chr1.2 | exon | 45955917 | 45956132 | 45955917 | ID=MS.gene065724.t1.exon3;Parent=MS.gene065724.t1 |
| chr1.2 | CDS | 45955917 | 45956132 | 45955917 | ID=cds.MS.gene065724.t1;Parent=MS.gene065724.t1 |
| Gene Sequence |
| Protein sequence |
