Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065728.t1 | XP_013467945.1 | 97.4 | 195 | 5 | 0 | 1 | 195 | 1 | 195 | 1.20E-91 | 345.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065728.t1 | P0DI39 | 84.0 | 194 | 30 | 1 | 1 | 194 | 1 | 193 | 1.9e-80 | 300.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065728.t1 | A0A072VJL1 | 97.4 | 195 | 5 | 0 | 1 | 195 | 1 | 195 | 8.8e-92 | 345.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene04932 | MS.gene065728 | 0.828471 | 8.83E-55 | -1.69E-46 |
MS.gene049549 | MS.gene065728 | 0.847287 | 1.27E-59 | -1.69E-46 |
MS.gene05104 | MS.gene065728 | 0.841465 | 4.67E-58 | -1.69E-46 |
MS.gene051996 | MS.gene065728 | 0.820345 | 7.20E-53 | -1.69E-46 |
MS.gene052211 | MS.gene065728 | 0.8238 | 1.14E-53 | -1.69E-46 |
MS.gene052223 | MS.gene065728 | 0.82609 | 3.28E-54 | -1.69E-46 |
MS.gene05240 | MS.gene065728 | 0.850935 | 1.23E-60 | -1.69E-46 |
MS.gene052702 | MS.gene065728 | 0.816482 | 5.41E-52 | -1.69E-46 |
MS.gene052706 | MS.gene065728 | 0.806016 | 1.01E-49 | -1.69E-46 |
MS.gene053406 | MS.gene065728 | 0.801807 | 7.56E-49 | -1.69E-46 |
MS.gene054277 | MS.gene065728 | 0.859621 | 3.64E-63 | -1.69E-46 |
MS.gene054742 | MS.gene065728 | 0.865452 | 5.85E-65 | -1.69E-46 |
MS.gene055215 | MS.gene065728 | 0.809122 | 2.21E-50 | -1.69E-46 |
MS.gene055240 | MS.gene065728 | 0.811662 | 6.26E-51 | -1.69E-46 |
MS.gene055959 | MS.gene065728 | 0.800259 | 1.57E-48 | -1.69E-46 |
MS.gene056076 | MS.gene065728 | 0.800542 | 1.37E-48 | -1.69E-46 |
MS.gene056330 | MS.gene065728 | 0.83943 | 1.59E-57 | -1.69E-46 |
MS.gene056590 | MS.gene065728 | 0.805646 | 1.21E-49 | -1.69E-46 |
MS.gene056591 | MS.gene065728 | 0.802437 | 5.61E-49 | -1.69E-46 |
MS.gene056680 | MS.gene065728 | 0.802895 | 4.51E-49 | -1.69E-46 |
MS.gene056688 | MS.gene065728 | 0.806707 | 7.22E-50 | -1.69E-46 |
MS.gene056697 | MS.gene065728 | 0.808877 | 2.50E-50 | -1.69E-46 |
MS.gene056856 | MS.gene065728 | 0.800971 | 1.12E-48 | -1.69E-46 |
MS.gene056920 | MS.gene065728 | 0.888172 | 7.47E-73 | -1.69E-46 |
MS.gene056922 | MS.gene065728 | 0.947356 | 7.89E-106 | -1.69E-46 |
MS.gene056923 | MS.gene065728 | 0.837715 | 4.41E-57 | -1.69E-46 |
MS.gene056924 | MS.gene065728 | 0.836868 | 7.27E-57 | -1.69E-46 |
MS.gene056925 | MS.gene065728 | 0.803347 | 3.64E-49 | -1.69E-46 |
MS.gene057261 | MS.gene065728 | 0.838315 | 3.09E-57 | -1.69E-46 |
MS.gene057544 | MS.gene065728 | 0.809436 | 1.89E-50 | -1.69E-46 |
MS.gene057550 | MS.gene065728 | 0.815448 | 9.20E-52 | -1.69E-46 |
MS.gene058067 | MS.gene065728 | 0.806517 | 7.92E-50 | -1.69E-46 |
MS.gene058450 | MS.gene065728 | 0.804076 | 2.57E-49 | -1.69E-46 |
MS.gene059039 | MS.gene065728 | 0.806239 | 9.06E-50 | -1.69E-46 |
MS.gene059892 | MS.gene065728 | 0.801775 | 7.68E-49 | -1.69E-46 |
MS.gene059955 | MS.gene065728 | 0.827563 | 1.46E-54 | -1.69E-46 |
MS.gene060087 | MS.gene065728 | 0.865187 | 7.08E-65 | -1.69E-46 |
MS.gene060205 | MS.gene065728 | 0.804037 | 2.62E-49 | -1.69E-46 |
MS.gene060405 | MS.gene065728 | 0.802938 | 4.42E-49 | -1.69E-46 |
MS.gene061092 | MS.gene065728 | 0.838508 | 2.76E-57 | -1.69E-46 |
MS.gene061094 | MS.gene065728 | 0.837801 | 4.19E-57 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene017305 | MS.gene065728 | PPI |
MS.gene05032 | MS.gene065728 | PPI |
MS.gene065728 | MS.gene05033 | PPI |
MS.gene26200 | MS.gene065728 | PPI |
MS.gene008354 | MS.gene065728 | PPI |
MS.gene061583 | MS.gene065728 | PPI |
MS.gene065728 | MS.gene049677 | PPI |
MS.gene065728 | MS.gene81804 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065728.t1 | MTR_1g058560 | 98.462 | 195 | 3 | 0 | 1 | 195 | 1 | 195 | 6.17e-138 | 383 |
MS.gene065728.t1 | MTR_1g058540 | 81.633 | 196 | 35 | 1 | 1 | 195 | 1 | 196 | 6.87e-100 | 287 |
MS.gene065728.t1 | MTR_1g058570 | 88.205 | 195 | 22 | 1 | 1 | 195 | 1 | 194 | 1.32e-99 | 286 |
MS.gene065728.t1 | MTR_2g086740 | 60.694 | 173 | 68 | 0 | 22 | 194 | 47 | 219 | 7.52e-59 | 184 |
MS.gene065728.t1 | MTR_7g011090 | 52.941 | 170 | 80 | 0 | 26 | 195 | 17 | 186 | 4.19e-56 | 176 |
MS.gene065728.t1 | MTR_4g081880 | 42.932 | 191 | 103 | 2 | 4 | 194 | 2 | 186 | 6.88e-51 | 162 |
MS.gene065728.t1 | MTR_5g041900 | 48.503 | 167 | 86 | 0 | 29 | 195 | 20 | 186 | 5.07e-45 | 147 |
MS.gene065728.t1 | MTR_2g086740 | 63.462 | 104 | 38 | 0 | 22 | 125 | 47 | 150 | 2.23e-34 | 119 |
MS.gene065728.t1 | MTR_0004s0210 | 37.419 | 155 | 84 | 4 | 36 | 188 | 7 | 150 | 5.21e-21 | 85.5 |
MS.gene065728.t1 | MTR_0097s0070 | 33.898 | 118 | 76 | 2 | 72 | 188 | 69 | 185 | 6.44e-14 | 67.4 |
MS.gene065728.t1 | MTR_4g118800 | 30.833 | 120 | 82 | 1 | 74 | 192 | 62 | 181 | 1.86e-12 | 63.2 |
MS.gene065728.t1 | MTR_8g089300 | 29.487 | 156 | 101 | 3 | 41 | 188 | 30 | 184 | 1.90e-12 | 63.5 |
MS.gene065728.t1 | MTR_7g108130 | 27.742 | 155 | 109 | 2 | 36 | 188 | 28 | 181 | 2.47e-12 | 63.2 |
MS.gene065728.t1 | MTR_3g064310 | 32.203 | 118 | 77 | 2 | 75 | 192 | 77 | 191 | 3.08e-12 | 63.2 |
MS.gene065728.t1 | MTR_5g076480 | 34.483 | 116 | 72 | 3 | 75 | 189 | 69 | 181 | 4.25e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065728.t1 | AT2G36100 | 56.863 | 204 | 76 | 3 | 2 | 195 | 5 | 206 | 1.27e-70 | 213 |
MS.gene065728.t1 | AT3G11550 | 62.189 | 201 | 68 | 3 | 2 | 195 | 5 | 204 | 3.20e-64 | 197 |
MS.gene065728.t1 | AT5G06200 | 61.616 | 198 | 70 | 3 | 2 | 194 | 5 | 201 | 1.02e-63 | 196 |
MS.gene065728.t1 | AT2G27370 | 51.724 | 203 | 83 | 2 | 7 | 194 | 17 | 219 | 1.99e-62 | 193 |
MS.gene065728.t1 | AT5G15290 | 44.828 | 174 | 86 | 1 | 2 | 175 | 3 | 166 | 1.91e-49 | 159 |
MS.gene065728.t1 | AT1G14160 | 41.212 | 165 | 97 | 0 | 31 | 195 | 45 | 209 | 3.99e-44 | 146 |
MS.gene065728.t1 | AT1G03700 | 32.886 | 149 | 91 | 2 | 40 | 188 | 12 | 151 | 2.50e-19 | 81.3 |
MS.gene065728.t1 | AT1G17200 | 27.660 | 188 | 124 | 4 | 9 | 192 | 2 | 181 | 2.00e-16 | 74.3 |
MS.gene065728.t1 | AT4G03540 | 33.058 | 121 | 72 | 2 | 56 | 176 | 28 | 139 | 2.31e-15 | 70.9 |
MS.gene065728.t1 | AT5G44550 | 33.951 | 162 | 95 | 4 | 41 | 194 | 22 | 179 | 2.68e-15 | 71.2 |
MS.gene065728.t1 | AT3G06390 | 30.075 | 133 | 88 | 2 | 37 | 164 | 37 | 169 | 2.78e-13 | 65.9 |
MS.gene065728.t1 | AT4G15630 | 26.601 | 203 | 118 | 6 | 2 | 192 | 6 | 189 | 7.74e-12 | 61.6 |
MS.gene065728.t1 | AT4G15610 | 26.144 | 153 | 107 | 3 | 28 | 175 | 20 | 171 | 8.02e-12 | 61.6 |
Find 40 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCCATCCTCCTGGCCTTGC+AGG | 0.176057 | 1.2:+45985646 | None:intergenic |
TGATTCTTGGATATCAATTT+TGG | 0.215560 | 1.2:+45985708 | None:intergenic |
CTAGCCATTTGCAACCAATT+TGG | 0.242258 | 1.2:-45984827 | MS.gene065728:CDS |
GTGATGTCTGCTTTGGCTAT+TGG | 0.247792 | 1.2:-45984731 | MS.gene065728:CDS |
TGGTATCTTTGCTTGATTCT+TGG | 0.263645 | 1.2:+45985695 | None:intergenic |
GGCAATAGTGGCTGGCTATT+TGG | 0.274909 | 1.2:-45985292 | MS.gene065728:CDS |
TGATGTCTGCTTTGGCTATT+GGG | 0.288501 | 1.2:-45984730 | MS.gene065728:CDS |
CCTTAAAATGAAATCCATTA+TGG | 0.301071 | 1.2:+45985612 | None:intergenic |
TACCAAAGGAAAAGCTGTTT+TGG | 0.315492 | 1.2:-45985677 | MS.gene065728:CDS |
ATGATGGCTACTATAGAAAA+AGG | 0.341980 | 1.2:+45985258 | None:intergenic |
AAGGCCAGGAGGATGGAAAA+AGG | 0.353235 | 1.2:-45985641 | MS.gene065728:CDS |
TCTTATTGCAATGGCAATAG+TGG | 0.367241 | 1.2:-45985304 | MS.gene065728:CDS |
TCTTGCCGCTGCCGCCTCGA+TGG | 0.384071 | 1.2:-45985569 | MS.gene065728:CDS |
AGCTGCTTCCATAGTTTACT+TGG | 0.385601 | 1.2:-45984879 | MS.gene065728:CDS |
CTTGCCGCTGCCGCCTCGAT+GGG | 0.402133 | 1.2:-45985568 | MS.gene065728:CDS |
GTTGGTTGTGATGTCTGCTT+TGG | 0.406589 | 1.2:-45984738 | MS.gene065728:CDS |
GTGCACAGAAATCTCCAAAT+TGG | 0.409853 | 1.2:+45984813 | None:intergenic |
ATGGAAATCAAGACACAAAC+TGG | 0.414877 | 1.2:-45984850 | MS.gene065728:CDS |
AGCGGCAAGAGCTGCTGCTA+TGG | 0.432197 | 1.2:+45985582 | None:intergenic |
ATCTCCAAATTGGTTGCAAA+TGG | 0.445100 | 1.2:+45984823 | None:intergenic |
GTTGCAGCACCTGCAAGGCC+AGG | 0.457764 | 1.2:-45985655 | MS.gene065728:CDS |
CACCTGCAAGGCCAGGAGGA+TGG | 0.475215 | 1.2:-45985648 | MS.gene065728:CDS |
ATTGTGTGCCAAGTAAACTA+TGG | 0.493367 | 1.2:+45984871 | None:intergenic |
AATGTTACATACTGGAATGC+AGG | 0.494232 | 1.2:+45985478 | None:intergenic |
AAGCCTTGGTCCAGTTGCAT+GGG | 0.497314 | 1.2:+45985230 | None:intergenic |
TGTTCCCATCGAGGCGGCAG+CGG | 0.517932 | 1.2:+45985564 | None:intergenic |
AAAGCCTTGGTCCAGTTGCA+TGG | 0.518863 | 1.2:+45985229 | None:intergenic |
ATTGCAGGTATTTCTTACAC+TGG | 0.547240 | 1.2:-45984921 | MS.gene065728:intron |
ATTGCAATGGCAATAGTGGC+TGG | 0.552076 | 1.2:-45985300 | MS.gene065728:CDS |
ATTGAGATCTTACAGTGTCT+AGG | 0.588191 | 1.2:+45985196 | None:intergenic |
TGTGGCATCATTTATTACTG+TGG | 0.599611 | 1.2:-45984774 | MS.gene065728:CDS |
ACAGACAAGTGGTGCAGTTG+TGG | 0.601968 | 1.2:-45984792 | MS.gene065728:CDS |
AGCCTTGGTCCAGTTGCATG+GGG | 0.616293 | 1.2:+45985231 | None:intergenic |
ATAGTTTACTTGGCACACAA+TGG | 0.619739 | 1.2:-45984869 | MS.gene065728:CDS |
GCAGCACCTGCAAGGCCAGG+AGG | 0.636977 | 1.2:-45985652 | MS.gene065728:CDS |
GAATCAAGCAAAGATACCAA+AGG | 0.648211 | 1.2:-45985691 | MS.gene065728:CDS |
ATCACTTGTTCCCATCGAGG+CGG | 0.653937 | 1.2:+45985558 | None:intergenic |
TTGATCACTTGTTCCCATCG+AGG | 0.661241 | 1.2:+45985555 | None:intergenic |
GATTTCTGTGCACAGACAAG+TGG | 0.683686 | 1.2:-45984803 | MS.gene065728:CDS |
GCCTTGGTCCAGTTGCATGG+GGG | 0.707472 | 1.2:+45985232 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GATGTATTTAATTCAACTTT+TGG | + | chr1.2:45985371-45985390 | None:intergenic | 20.0% |
!!! | TTAGTTATGATTTTTCTTTG+TGG | - | chr1.2:45985484-45985503 | MS.gene065728:intron | 20.0% |
! | CCTTAAAATGAAATCCATTA+TGG | + | chr1.2:45984827-45984846 | None:intergenic | 25.0% |
! | TTCTAAGTCACATATAAGAT+CGG | - | chr1.2:45985003-45985022 | MS.gene065728:intron | 25.0% |
!! | CTTATACTTATATTTGAGAC+TGG | + | chr1.2:45985319-45985338 | None:intergenic | 25.0% |
!! | TGATTCTTGGATATCAATTT+TGG | + | chr1.2:45984731-45984750 | None:intergenic | 25.0% |
!!! | ATGGATTTCATTTTAAGGTT+AGG | - | chr1.2:45984829-45984848 | MS.gene065728:CDS | 25.0% |
!!! | CCATAATGGATTTCATTTTA+AGG | - | chr1.2:45984824-45984843 | MS.gene065728:CDS | 25.0% |
!!! | TCAACAAAAGTTGATGTATT+TGG | - | chr1.2:45985344-45985363 | MS.gene065728:intron | 25.0% |
ACTCTTCTTGATCATTTCTT+TGG | - | chr1.2:45985270-45985289 | MS.gene065728:CDS | 30.0% | |
ACTTAATGCTTGAAAAATGC+AGG | - | chr1.2:45985104-45985123 | MS.gene065728:intron | 30.0% | |
ATGATGGCTACTATAGAAAA+AGG | + | chr1.2:45985181-45985200 | None:intergenic | 30.0% | |
TAGATGTTTACTACTCTCTT+CGG | + | chr1.2:45985430-45985449 | None:intergenic | 30.0% | |
! | ATACTTATATTTGAGACTGG+AGG | + | chr1.2:45985316-45985335 | None:intergenic | 30.0% |
! | TACTTATATTTGAGACTGGA+GGG | + | chr1.2:45985315-45985334 | None:intergenic | 30.0% |
!!! | CAGGTTTTTTCTTATTGCAA+TGG | - | chr1.2:45985123-45985142 | MS.gene065728:intron | 30.0% |
!!! | GAGTTTTGAATGTTACATAC+TGG | + | chr1.2:45984969-45984988 | None:intergenic | 30.0% |
!!! | TGTGGTTGTTTTAATCTTGT+TGG | - | chr1.2:45985680-45985699 | MS.gene065728:CDS | 30.0% |
AATGTTACATACTGGAATGC+AGG | + | chr1.2:45984961-45984980 | None:intergenic | 35.0% | |
ATAGTTTACTTGGCACACAA+TGG | - | chr1.2:45985567-45985586 | MS.gene065728:CDS | 35.0% | |
ATCTCCAAATTGGTTGCAAA+TGG | + | chr1.2:45985616-45985635 | None:intergenic | 35.0% | |
ATGGAAATCAAGACACAAAC+TGG | - | chr1.2:45985586-45985605 | MS.gene065728:CDS | 35.0% | |
ATTGAGATCTTACAGTGTCT+AGG | + | chr1.2:45985243-45985262 | None:intergenic | 35.0% | |
ATTGCAGGTATTTCTTACAC+TGG | - | chr1.2:45985515-45985534 | MS.gene065728:CDS | 35.0% | |
ATTGTGTGCCAAGTAAACTA+TGG | + | chr1.2:45985568-45985587 | None:intergenic | 35.0% | |
GAATCAAGCAAAGATACCAA+AGG | - | chr1.2:45984745-45984764 | MS.gene065728:CDS | 35.0% | |
TCTTATTGCAATGGCAATAG+TGG | - | chr1.2:45985132-45985151 | MS.gene065728:intron | 35.0% | |
TGGTATCTTTGCTTGATTCT+TGG | + | chr1.2:45984744-45984763 | None:intergenic | 35.0% | |
TGTGGCATCATTTATTACTG+TGG | - | chr1.2:45985662-45985681 | MS.gene065728:CDS | 35.0% | |
TTTGTGGTGCTTATAATTGC+AGG | - | chr1.2:45985500-45985519 | MS.gene065728:CDS | 35.0% | |
! | AACCAAAACAGCTTTTCCTT+TGG | + | chr1.2:45984764-45984783 | None:intergenic | 35.0% |
! | ACTTATATTTGAGACTGGAG+GGG | + | chr1.2:45985314-45985333 | None:intergenic | 35.0% |
! | TACCAAAGGAAAAGCTGTTT+TGG | - | chr1.2:45984759-45984778 | MS.gene065728:CDS | 35.0% |
AGCTGCTTCCATAGTTTACT+TGG | - | chr1.2:45985557-45985576 | MS.gene065728:CDS | 40.0% | |
AGGATGATGAGAAAAAGCCT+TGG | + | chr1.2:45985223-45985242 | None:intergenic | 40.0% | |
CTAGCCATTTGCAACCAATT+TGG | - | chr1.2:45985609-45985628 | MS.gene065728:CDS | 40.0% | |
GTGCACAGAAATCTCCAAAT+TGG | + | chr1.2:45985626-45985645 | None:intergenic | 40.0% | |
TGATGTCTGCTTTGGCTATT+GGG | - | chr1.2:45985706-45985725 | MS.gene065728:CDS | 40.0% | |
! | CTTATATTTGAGACTGGAGG+GGG | + | chr1.2:45985313-45985332 | None:intergenic | 40.0% |
! | GAAAAAGGGCATAGCCATAA+TGG | - | chr1.2:45984810-45984829 | MS.gene065728:CDS | 40.0% |
ATTGCAATGGCAATAGTGGC+TGG | - | chr1.2:45985136-45985155 | MS.gene065728:intron | 45.0% | |
GATTTCTGTGCACAGACAAG+TGG | - | chr1.2:45985633-45985652 | MS.gene065728:CDS | 45.0% | |
GTGATGTCTGCTTTGGCTAT+TGG | - | chr1.2:45985705-45985724 | MS.gene065728:CDS | 45.0% | |
GTTGGTTGTGATGTCTGCTT+TGG | - | chr1.2:45985698-45985717 | MS.gene065728:CDS | 45.0% | |
TTGATCACTTGTTCCCATCG+AGG | + | chr1.2:45984884-45984903 | None:intergenic | 45.0% | |
AAAGCCTTGGTCCAGTTGCA+TGG | + | chr1.2:45985210-45985229 | None:intergenic | 50.0% | |
AAGCCTTGGTCCAGTTGCAT+GGG | + | chr1.2:45985209-45985228 | None:intergenic | 50.0% | |
AAGGCCAGGAGGATGGAAAA+AGG | - | chr1.2:45984795-45984814 | MS.gene065728:CDS | 50.0% | |
ACAGACAAGTGGTGCAGTTG+TGG | - | chr1.2:45985644-45985663 | MS.gene065728:CDS | 50.0% | |
AGGCCAGGAGGATGGAAAAA+GGG | - | chr1.2:45984796-45984815 | MS.gene065728:CDS | 50.0% | |
ATCACTTGTTCCCATCGAGG+CGG | + | chr1.2:45984881-45984900 | None:intergenic | 50.0% | |
! | ATGCCCTTTTTCCATCCTCC+TGG | + | chr1.2:45984802-45984821 | None:intergenic | 50.0% |
! | GGCAATAGTGGCTGGCTATT+TGG | - | chr1.2:45985144-45985163 | MS.gene065728:intron | 50.0% |
!! | TTTTGGTTGCAGCACCTGCA+AGG | - | chr1.2:45984776-45984795 | MS.gene065728:CDS | 50.0% |
AGCCTTGGTCCAGTTGCATG+GGG | + | chr1.2:45985208-45985227 | None:intergenic | 55.0% | |
ATCATACGCCCCCATGCAAC+TGG | - | chr1.2:45985196-45985215 | MS.gene065728:intron | 55.0% | |
! | AGTTGCATGGGGGCGTATGA+TGG | + | chr1.2:45985197-45985216 | None:intergenic | 55.0% |
AGCGGCAAGAGCTGCTGCTA+TGG | + | chr1.2:45984857-45984876 | None:intergenic | 60.0% | |
GCCTTGGTCCAGTTGCATGG+GGG | + | chr1.2:45985207-45985226 | None:intergenic | 60.0% | |
!! | TTCCATCCTCCTGGCCTTGC+AGG | + | chr1.2:45984793-45984812 | None:intergenic | 60.0% |
CACCTGCAAGGCCAGGAGGA+TGG | - | chr1.2:45984788-45984807 | MS.gene065728:CDS | 65.0% | |
GCCCCCATGCAACTGGACCA+AGG | - | chr1.2:45985203-45985222 | MS.gene065728:intron | 65.0% | |
GTTGCAGCACCTGCAAGGCC+AGG | - | chr1.2:45984781-45984800 | MS.gene065728:CDS | 65.0% | |
TGTTCCCATCGAGGCGGCAG+CGG | + | chr1.2:45984875-45984894 | None:intergenic | 65.0% | |
CTTGCCGCTGCCGCCTCGAT+GGG | - | chr1.2:45984868-45984887 | MS.gene065728:CDS | 70.0% | |
GCAGCACCTGCAAGGCCAGG+AGG | - | chr1.2:45984784-45984803 | MS.gene065728:CDS | 70.0% | |
TCTTGCCGCTGCCGCCTCGA+TGG | - | chr1.2:45984867-45984886 | MS.gene065728:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 45984721 | 45985737 | 45984721 | ID=MS.gene065728 |
chr1.2 | mRNA | 45984721 | 45985737 | 45984721 | ID=MS.gene065728.t1;Parent=MS.gene065728 |
chr1.2 | exon | 45985490 | 45985737 | 45985490 | ID=MS.gene065728.t1.exon1;Parent=MS.gene065728.t1 |
chr1.2 | CDS | 45985490 | 45985737 | 45985490 | ID=cds.MS.gene065728.t1;Parent=MS.gene065728.t1 |
chr1.2 | exon | 45985209 | 45985332 | 45985209 | ID=MS.gene065728.t1.exon2;Parent=MS.gene065728.t1 |
chr1.2 | CDS | 45985209 | 45985332 | 45985209 | ID=cds.MS.gene065728.t1;Parent=MS.gene065728.t1 |
chr1.2 | exon | 45984721 | 45984936 | 45984721 | ID=MS.gene065728.t1.exon3;Parent=MS.gene065728.t1 |
chr1.2 | CDS | 45984721 | 45984936 | 45984721 | ID=cds.MS.gene065728.t1;Parent=MS.gene065728.t1 |
Gene Sequence |
Protein sequence |