Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81770.t1 | XP_013467946.1 | 96.9 | 194 | 6 | 0 | 1 | 194 | 1 | 194 | 3.20E-92 | 347.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81770.t1 | P0DI40 | 84.0 | 194 | 29 | 1 | 1 | 194 | 1 | 192 | 2.0e-82 | 306.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81770.t1 | A0A072VKN9 | 96.9 | 194 | 6 | 0 | 1 | 194 | 1 | 194 | 2.3e-92 | 347.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene81770 | 0.820435 | 6.87E-53 | -1.69E-46 |
| MS.gene049549 | MS.gene81770 | 0.837418 | 5.26E-57 | -1.69E-46 |
| MS.gene050133 | MS.gene81770 | 0.800103 | 1.69E-48 | -1.69E-46 |
| MS.gene050329 | MS.gene81770 | 0.807619 | 4.63E-50 | -1.69E-46 |
| MS.gene050344 | MS.gene81770 | 0.813168 | 2.93E-51 | -1.69E-46 |
| MS.gene05104 | MS.gene81770 | 0.801309 | 9.57E-49 | -1.69E-46 |
| MS.gene051131 | MS.gene81770 | 0.825159 | 5.46E-54 | -1.69E-46 |
| MS.gene051158 | MS.gene81770 | 0.81678 | 4.63E-52 | -1.69E-46 |
| MS.gene051632 | MS.gene81770 | 0.811024 | 8.61E-51 | -1.69E-46 |
| MS.gene051996 | MS.gene81770 | 0.869479 | 3.00E-66 | -1.69E-46 |
| MS.gene052011 | MS.gene81770 | 0.810784 | 9.70E-51 | -1.69E-46 |
| MS.gene052211 | MS.gene81770 | 0.819633 | 1.05E-52 | -1.69E-46 |
| MS.gene052223 | MS.gene81770 | 0.864582 | 1.10E-64 | -1.69E-46 |
| MS.gene05240 | MS.gene81770 | 0.85171 | 7.43E-61 | -1.69E-46 |
| MS.gene05244 | MS.gene81770 | 0.807454 | 5.01E-50 | -1.69E-46 |
| MS.gene052706 | MS.gene81770 | 0.817322 | 3.50E-52 | -1.69E-46 |
| MS.gene053406 | MS.gene81770 | 0.825801 | 3.84E-54 | -1.69E-46 |
| MS.gene054138 | MS.gene81770 | 0.860951 | 1.44E-63 | -1.69E-46 |
| MS.gene054146 | MS.gene81770 | 0.806163 | 9.40E-50 | -1.69E-46 |
| MS.gene054147 | MS.gene81770 | 0.815552 | 8.72E-52 | -1.69E-46 |
| MS.gene054277 | MS.gene81770 | 0.872384 | 3.31E-67 | -1.69E-46 |
| MS.gene054742 | MS.gene81770 | 0.892987 | 9.56E-75 | -1.69E-46 |
| MS.gene055215 | MS.gene81770 | 0.833843 | 4.22E-56 | -1.69E-46 |
| MS.gene055240 | MS.gene81770 | 0.807772 | 4.29E-50 | -1.69E-46 |
| MS.gene055959 | MS.gene81770 | 0.800897 | 1.16E-48 | -1.69E-46 |
| MS.gene056076 | MS.gene81770 | 0.825176 | 5.41E-54 | -1.69E-46 |
| MS.gene056330 | MS.gene81770 | 0.895114 | 1.30E-75 | -1.69E-46 |
| MS.gene056514 | MS.gene81770 | -0.802842 | 4.63E-49 | -1.69E-46 |
| MS.gene056590 | MS.gene81770 | 0.808959 | 2.40E-50 | -1.69E-46 |
| MS.gene056591 | MS.gene81770 | 0.806445 | 8.20E-50 | -1.69E-46 |
| MS.gene056680 | MS.gene81770 | 0.822229 | 2.65E-53 | -1.69E-46 |
| MS.gene056690 | MS.gene81770 | 0.809513 | 1.82E-50 | -1.69E-46 |
| MS.gene056691 | MS.gene81770 | 0.829523 | 4.91E-55 | -1.69E-46 |
| MS.gene056715 | MS.gene81770 | 0.805892 | 1.07E-49 | -1.69E-46 |
| MS.gene056899 | MS.gene81770 | 0.812156 | 4.88E-51 | -1.69E-46 |
| MS.gene056920 | MS.gene81770 | 0.917245 | 6.72E-86 | -1.69E-46 |
| MS.gene056922 | MS.gene81770 | 0.887269 | 1.65E-72 | -1.69E-46 |
| MS.gene056923 | MS.gene81770 | 0.91663 | 1.41E-85 | -1.69E-46 |
| MS.gene056924 | MS.gene81770 | 0.918881 | 9.01E-87 | -1.69E-46 |
| MS.gene056925 | MS.gene81770 | 0.870651 | 1.24E-66 | -1.69E-46 |
| MS.gene057261 | MS.gene81770 | 0.856954 | 2.27E-62 | -1.69E-46 |
| MS.gene057544 | MS.gene81770 | 0.858491 | 7.94E-63 | -1.69E-46 |
| MS.gene057749 | MS.gene81770 | -0.806761 | 7.03E-50 | -1.69E-46 |
| MS.gene058067 | MS.gene81770 | 0.803398 | 3.55E-49 | -1.69E-46 |
| MS.gene058093 | MS.gene81770 | 0.808825 | 2.56E-50 | -1.69E-46 |
| MS.gene058179 | MS.gene81770 | 0.808851 | 2.53E-50 | -1.69E-46 |
| MS.gene058218 | MS.gene81770 | 0.804273 | 2.34E-49 | -1.69E-46 |
| MS.gene059037 | MS.gene81770 | 0.807327 | 5.34E-50 | -1.69E-46 |
| MS.gene059039 | MS.gene81770 | 0.813862 | 2.06E-51 | -1.69E-46 |
| MS.gene059043 | MS.gene81770 | 0.820617 | 6.24E-53 | -1.69E-46 |
| MS.gene059328 | MS.gene81770 | 0.850841 | 1.31E-60 | -1.69E-46 |
| MS.gene059420 | MS.gene81770 | -0.802248 | 6.14E-49 | -1.69E-46 |
| MS.gene059891 | MS.gene81770 | 0.806887 | 6.61E-50 | -1.69E-46 |
| MS.gene059892 | MS.gene81770 | 0.803246 | 3.82E-49 | -1.69E-46 |
| MS.gene059955 | MS.gene81770 | 0.826517 | 2.60E-54 | -1.69E-46 |
| MS.gene060087 | MS.gene81770 | 0.866996 | 1.89E-65 | -1.69E-46 |
| MS.gene060205 | MS.gene81770 | 0.844652 | 6.62E-59 | -1.69E-46 |
| MS.gene060578 | MS.gene81770 | 0.839667 | 1.38E-57 | -1.69E-46 |
| MS.gene061094 | MS.gene81770 | 0.802087 | 6.63E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05033 | MS.gene81770 | PPI |
| MS.gene26200 | MS.gene81770 | PPI |
| MS.gene008354 | MS.gene81770 | PPI |
| MS.gene061583 | MS.gene81770 | PPI |
| MS.gene81770 | MS.gene049677 | PPI |
| MS.gene81804 | MS.gene81770 | PPI |
| MS.gene017305 | MS.gene81770 | PPI |
| MS.gene05032 | MS.gene81770 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81770.t1 | MTR_1g058570 | 96.907 | 194 | 6 | 0 | 1 | 194 | 1 | 194 | 2.54e-136 | 379 |
| MS.gene81770.t1 | MTR_1g058540 | 79.082 | 196 | 39 | 1 | 1 | 194 | 1 | 196 | 1.00e-100 | 289 |
| MS.gene81770.t1 | MTR_1g058560 | 86.667 | 195 | 25 | 1 | 1 | 194 | 1 | 195 | 2.06e-98 | 283 |
| MS.gene81770.t1 | MTR_2g086740 | 56.818 | 176 | 76 | 0 | 18 | 193 | 44 | 219 | 3.14e-57 | 180 |
| MS.gene81770.t1 | MTR_7g011090 | 49.180 | 183 | 89 | 1 | 12 | 194 | 8 | 186 | 5.78e-55 | 173 |
| MS.gene81770.t1 | MTR_4g081880 | 43.243 | 185 | 100 | 2 | 9 | 193 | 7 | 186 | 3.53e-48 | 155 |
| MS.gene81770.t1 | MTR_5g041900 | 46.108 | 167 | 90 | 0 | 28 | 194 | 20 | 186 | 9.49e-43 | 142 |
| MS.gene81770.t1 | MTR_2g086740 | 57.944 | 107 | 45 | 0 | 18 | 124 | 44 | 150 | 2.28e-32 | 114 |
| MS.gene81770.t1 | MTR_0004s0210 | 35.849 | 159 | 89 | 4 | 31 | 187 | 3 | 150 | 2.30e-18 | 78.6 |
| MS.gene81770.t1 | MTR_7g108130 | 28.049 | 164 | 113 | 3 | 31 | 191 | 24 | 185 | 8.39e-14 | 67.0 |
| MS.gene81770.t1 | MTR_0097s0070 | 31.356 | 118 | 79 | 2 | 71 | 187 | 69 | 185 | 8.61e-13 | 64.3 |
| MS.gene81770.t1 | MTR_8g089300 | 31.013 | 158 | 96 | 4 | 40 | 187 | 30 | 184 | 9.54e-12 | 61.6 |
| MS.gene81770.t1 | MTR_3g064310 | 32.203 | 118 | 77 | 2 | 74 | 191 | 77 | 191 | 4.51e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81770.t1 | AT2G36100 | 58.911 | 202 | 74 | 1 | 2 | 194 | 5 | 206 | 7.78e-73 | 219 |
| MS.gene81770.t1 | AT5G06200 | 61.421 | 197 | 71 | 2 | 2 | 193 | 5 | 201 | 2.20e-63 | 195 |
| MS.gene81770.t1 | AT3G11550 | 60.500 | 200 | 72 | 2 | 2 | 194 | 5 | 204 | 4.66e-62 | 191 |
| MS.gene81770.t1 | AT2G27370 | 58.929 | 168 | 69 | 0 | 26 | 193 | 52 | 219 | 1.00e-60 | 189 |
| MS.gene81770.t1 | AT5G15290 | 48.000 | 150 | 78 | 0 | 25 | 174 | 17 | 166 | 1.22e-47 | 154 |
| MS.gene81770.t1 | AT1G14160 | 40.606 | 165 | 98 | 0 | 30 | 194 | 45 | 209 | 1.43e-41 | 139 |
| MS.gene81770.t1 | AT1G03700 | 32.215 | 149 | 92 | 2 | 39 | 187 | 12 | 151 | 6.87e-19 | 80.1 |
| MS.gene81770.t1 | AT4G03540 | 33.058 | 121 | 72 | 2 | 55 | 175 | 28 | 139 | 2.96e-15 | 70.5 |
| MS.gene81770.t1 | AT1G17200 | 27.545 | 167 | 109 | 4 | 29 | 191 | 23 | 181 | 2.95e-14 | 68.6 |
| MS.gene81770.t1 | AT4G15630 | 28.492 | 179 | 108 | 5 | 25 | 191 | 19 | 189 | 5.96e-14 | 67.4 |
| MS.gene81770.t1 | AT5G44550 | 30.864 | 162 | 100 | 4 | 40 | 193 | 22 | 179 | 2.24e-12 | 63.2 |
| MS.gene81770.t1 | AT3G06390 | 28.571 | 133 | 90 | 2 | 36 | 163 | 37 | 169 | 3.62e-12 | 62.8 |
Find 44 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTAATGTTGCTTGGTTC+TGG | 0.115217 | 1.3:+43261246 | None:intergenic |
| CTAGCCATTTGCAACCAATT+TGG | 0.242258 | 1.3:-43260557 | MS.gene81770:CDS |
| GTGATGTCTGCTTTGGCTCT+TGG | 0.283856 | 1.3:-43260461 | MS.gene81770:CDS |
| AAGGCCTGGAGGATGGAAAA+AGG | 0.302153 | 1.3:-43261196 | MS.gene81770:CDS |
| CCTTAGAATGAAATCCATTA+TGG | 0.309686 | 1.3:+43261167 | None:intergenic |
| CCATAATGGATTTCATTCTA+AGG | 0.312115 | 1.3:-43261167 | MS.gene81770:CDS |
| TTCCATCCTCCAGGCCTTGT+AGG | 0.319831 | 1.3:+43261201 | None:intergenic |
| TTACGATATCTAAGATAATA+AGG | 0.319981 | 1.3:+43260834 | None:intergenic |
| TGATGTCTGCTTTGGCTCTT+GGG | 0.345325 | 1.3:-43260460 | MS.gene81770:CDS |
| TATTGCCGCTGCCGCCTCAA+TGG | 0.357738 | 1.3:-43261124 | MS.gene81770:CDS |
| TGTTAATGTTGCTTGGTTCT+GGG | 0.362737 | 1.3:+43261247 | None:intergenic |
| ATTGCCGCTGCCGCCTCAAT+GGG | 0.364904 | 1.3:-43261123 | MS.gene81770:CDS |
| ATGGATTTCATTCTAAGGTT+AGG | 0.379588 | 1.3:-43261162 | MS.gene81770:CDS |
| AGCTGCTTCCATAGTTTACT+TGG | 0.387801 | 1.3:-43260609 | MS.gene81770:CDS |
| GTTGGTTGTGATGTCTGCTT+TGG | 0.390211 | 1.3:-43260468 | MS.gene81770:CDS |
| GTGCACAGAAATCTCCAAAT+TGG | 0.409853 | 1.3:+43260543 | None:intergenic |
| ATGGAAATCAAGACACAAAC+TGG | 0.414877 | 1.3:-43260580 | MS.gene81770:CDS |
| AGCTGCAGCAGCACTTGAAG+TGG | 0.421850 | 1.3:+43260628 | None:intergenic |
| AAGCCTTGGTCCAGGCGCAT+GGG | 0.441787 | 1.3:+43260859 | None:intergenic |
| AAAGCCTTGGTCCAGGCGCA+TGG | 0.443522 | 1.3:+43260858 | None:intergenic |
| AGCGGCAATAGCCGCTGCTA+TGG | 0.444367 | 1.3:+43261137 | None:intergenic |
| ATCTCCAAATTGGTTGCAAA+TGG | 0.445100 | 1.3:+43260553 | None:intergenic |
| GCTTGGTTCTGGGACATCAA+TGG | 0.457904 | 1.3:+43261257 | None:intergenic |
| TGGTAGGGATAGAACTAAGT+AGG | 0.473587 | 1.3:+43260907 | None:intergenic |
| TGTTCCCATTGAGGCGGCAG+CGG | 0.482406 | 1.3:+43261119 | None:intergenic |
| CTAGTTGCACCTACAAGGCC+TGG | 0.489392 | 1.3:-43261210 | MS.gene81770:CDS |
| ATTGTGTGCCAAGTAAACTA+TGG | 0.493367 | 1.3:+43260601 | None:intergenic |
| TGGCTACGACAGAGAATGGT+AGG | 0.504458 | 1.3:+43260891 | None:intergenic |
| CAATTCTAGTTGCACCTACA+AGG | 0.507515 | 1.3:-43261215 | MS.gene81770:CDS |
| CACCTACAAGGCCTGGAGGA+TGG | 0.513895 | 1.3:-43261203 | MS.gene81770:CDS |
| ATGATGGCTACGACAGAGAA+TGG | 0.518145 | 1.3:+43260887 | None:intergenic |
| CTGATCACTTGTTCCCATTG+AGG | 0.525536 | 1.3:+43261110 | None:intergenic |
| AGCCTTGGTCCAGGCGCATG+GGG | 0.531806 | 1.3:+43260860 | None:intergenic |
| ATAAGGAAAAGCCTTGGTCC+AGG | 0.552077 | 1.3:+43260851 | None:intergenic |
| AAGATAATAAGGAAAAGCCT+TGG | 0.569952 | 1.3:+43260845 | None:intergenic |
| ATCACTTGTTCCCATTGAGG+CGG | 0.575884 | 1.3:+43261113 | None:intergenic |
| AGTTGCATCATTTATTACTG+TGG | 0.594258 | 1.3:-43260504 | MS.gene81770:CDS |
| GATTTCTGTGCACAGACAAG+TGG | 0.595748 | 1.3:-43260533 | MS.gene81770:CDS |
| ATAGTTTACTTGGCACACAA+TGG | 0.619739 | 1.3:-43260599 | MS.gene81770:CDS |
| AGAACCAAGCAACATTAACA+AGG | 0.655647 | 1.3:-43261244 | MS.gene81770:CDS |
| AAGGTTAGGTGCCATAGCAG+CGG | 0.656083 | 1.3:-43261148 | MS.gene81770:CDS |
| GGCTACGACAGAGAATGGTA+GGG | 0.661247 | 1.3:+43260892 | None:intergenic |
| GCCTTGGTCCAGGCGCATGG+GGG | 0.665227 | 1.3:+43260861 | None:intergenic |
| GTTGCACCTACAAGGCCTGG+AGG | 0.707990 | 1.3:-43261207 | MS.gene81770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTAATAAAAATATGATAA+CGG | - | chr1.3:43260950-43260969 | MS.gene81770:intron | 10.0% |
| !! | ATTAAATTGTATACATCAAT+CGG | + | chr1.3:43260989-43261008 | None:intergenic | 15.0% |
| !! | GTTAATAAAAATATGATAAC+GGG | - | chr1.3:43260951-43260970 | MS.gene81770:intron | 15.0% |
| !!! | GTATTAGCTTATTATAATTA+TGG | + | chr1.3:43260745-43260764 | None:intergenic | 15.0% |
| !!! | AACTGTGTTTATGAAATTTT+AGG | - | chr1.3:43261052-43261071 | MS.gene81770:CDS | 20.0% |
| !!! | TTACGATATCTAAGATAATA+AGG | + | chr1.3:43260887-43260906 | None:intergenic | 20.0% |
| !!! | CAGGTTTTTTGTTATTTCAA+TGG | - | chr1.3:43260776-43260795 | MS.gene81770:intron | 25.0% |
| AAGATAATAAGGAAAAGCCT+TGG | + | chr1.3:43260876-43260895 | None:intergenic | 30.0% | |
| AGTTGCATCATTTATTACTG+TGG | - | chr1.3:43261214-43261233 | MS.gene81770:CDS | 30.0% | |
| CCTTAGAATGAAATCCATTA+TGG | + | chr1.3:43260554-43260573 | None:intergenic | 30.0% | |
| GAAAGAACTGAGTGAAAAAA+GGG | + | chr1.3:43260639-43260658 | None:intergenic | 30.0% | |
| TGAAAGAACTGAGTGAAAAA+AGG | + | chr1.3:43260640-43260659 | None:intergenic | 30.0% | |
| ! | TTTTCCTTGTTAATGTTGCT+TGG | + | chr1.3:43260481-43260500 | None:intergenic | 30.0% |
| !! | ATGGATTTCATTCTAAGGTT+AGG | - | chr1.3:43260556-43260575 | MS.gene81770:CDS | 30.0% |
| !! | ATTTTAGGTGTTTCTTACTC+TGG | - | chr1.3:43261067-43261086 | MS.gene81770:CDS | 30.0% |
| !! | CCATAATGGATTTCATTCTA+AGG | - | chr1.3:43260551-43260570 | MS.gene81770:CDS | 30.0% |
| !! | TAAAAATATGATAACGGGTG+CGG | - | chr1.3:43260956-43260975 | MS.gene81770:intron | 30.0% |
| !!! | AAGTTTTGAGTGTTACATAC+TGG | + | chr1.3:43260696-43260715 | None:intergenic | 30.0% |
| !!! | TGTGGTTGTTTTAATCTTGT+TGG | - | chr1.3:43261232-43261251 | MS.gene81770:CDS | 30.0% |
| AGAACCAAGCAACATTAACA+AGG | - | chr1.3:43260474-43260493 | MS.gene81770:CDS | 35.0% | |
| ATAGTTTACTTGGCACACAA+TGG | - | chr1.3:43261119-43261138 | MS.gene81770:CDS | 35.0% | |
| ATCTCCAAATTGGTTGCAAA+TGG | + | chr1.3:43261168-43261187 | None:intergenic | 35.0% | |
| ATGGAAATCAAGACACAAAC+TGG | - | chr1.3:43261138-43261157 | MS.gene81770:CDS | 35.0% | |
| ATTGTGTGCCAAGTAAACTA+TGG | + | chr1.3:43261120-43261139 | None:intergenic | 35.0% | |
| GCTAATACTTGAAACAATGC+AGG | - | chr1.3:43260757-43260776 | MS.gene81770:intron | 35.0% | |
| TTTGAGTGTTACATACTGGA+AGG | + | chr1.3:43260692-43260711 | None:intergenic | 35.0% | |
| ! | TGTTAATGTTGCTTGGTTCT+GGG | + | chr1.3:43260474-43260493 | None:intergenic | 35.0% |
| ! | TTGTTAATGTTGCTTGGTTC+TGG | + | chr1.3:43260475-43260494 | None:intergenic | 35.0% |
| AGCTGCTTCCATAGTTTACT+TGG | - | chr1.3:43261109-43261128 | MS.gene81770:CDS | 40.0% | |
| CTAGCCATTTGCAACCAATT+TGG | - | chr1.3:43261161-43261180 | MS.gene81770:CDS | 40.0% | |
| GAAAAAGGGAACAGCCATAA+TGG | - | chr1.3:43260537-43260556 | MS.gene81770:CDS | 40.0% | |
| GTGCACAGAAATCTCCAAAT+TGG | + | chr1.3:43261178-43261197 | None:intergenic | 40.0% | |
| TGGTAGGGATAGAACTAAGT+AGG | + | chr1.3:43260814-43260833 | None:intergenic | 40.0% | |
| ! | CAATTCTAGTTGCACCTACA+AGG | - | chr1.3:43260503-43260522 | MS.gene81770:CDS | 40.0% |
| ATAAGGAAAAGCCTTGGTCC+AGG | + | chr1.3:43260870-43260889 | None:intergenic | 45.0% | |
| ATCACTTGTTCCCATTGAGG+CGG | + | chr1.3:43260608-43260627 | None:intergenic | 45.0% | |
| ATGATGGCTACGACAGAGAA+TGG | + | chr1.3:43260834-43260853 | None:intergenic | 45.0% | |
| CTGATCACTTGTTCCCATTG+AGG | + | chr1.3:43260611-43260630 | None:intergenic | 45.0% | |
| GATTTCTGTGCACAGACAAG+TGG | - | chr1.3:43261185-43261204 | MS.gene81770:CDS | 45.0% | |
| GTTGGTTGTGATGTCTGCTT+TGG | - | chr1.3:43261250-43261269 | MS.gene81770:CDS | 45.0% | |
| !! | TGATGTCTGCTTTGGCTCTT+GGG | - | chr1.3:43261258-43261277 | MS.gene81770:CDS | 45.0% |
| AAGGCCTGGAGGATGGAAAA+AGG | - | chr1.3:43260522-43260541 | MS.gene81770:CDS | 50.0% | |
| AGGCCTGGAGGATGGAAAAA+GGG | - | chr1.3:43260523-43260542 | MS.gene81770:CDS | 50.0% | |
| GGCTACGACAGAGAATGGTA+GGG | + | chr1.3:43260829-43260848 | None:intergenic | 50.0% | |
| TGGCTACGACAGAGAATGGT+AGG | + | chr1.3:43260830-43260849 | None:intergenic | 50.0% | |
| ! | AAGGTTAGGTGCCATAGCAG+CGG | - | chr1.3:43260570-43260589 | MS.gene81770:CDS | 50.0% |
| ! | GTTCCCTTTTTCCATCCTCC+AGG | + | chr1.3:43260529-43260548 | None:intergenic | 50.0% |
| !! | GCTTGGTTCTGGGACATCAA+TGG | + | chr1.3:43260464-43260483 | None:intergenic | 50.0% |
| !! | GTGATGTCTGCTTTGGCTCT+TGG | - | chr1.3:43261257-43261276 | MS.gene81770:CDS | 50.0% |
| AGCTGCAGCAGCACTTGAAG+TGG | + | chr1.3:43261093-43261112 | None:intergenic | 55.0% | |
| CTAGTTGCACCTACAAGGCC+TGG | - | chr1.3:43260508-43260527 | MS.gene81770:CDS | 55.0% | |
| ! | TTCCATCCTCCAGGCCTTGT+AGG | + | chr1.3:43260520-43260539 | None:intergenic | 55.0% |
| AAAGCCTTGGTCCAGGCGCA+TGG | + | chr1.3:43260863-43260882 | None:intergenic | 60.0% | |
| AAGCCTTGGTCCAGGCGCAT+GGG | + | chr1.3:43260862-43260881 | None:intergenic | 60.0% | |
| AGCGGCAATAGCCGCTGCTA+TGG | + | chr1.3:43260584-43260603 | None:intergenic | 60.0% | |
| ATTGCCGCTGCCGCCTCAAT+GGG | - | chr1.3:43260595-43260614 | MS.gene81770:CDS | 60.0% | |
| CACCTACAAGGCCTGGAGGA+TGG | - | chr1.3:43260515-43260534 | MS.gene81770:CDS | 60.0% | |
| GTTGCACCTACAAGGCCTGG+AGG | - | chr1.3:43260511-43260530 | MS.gene81770:CDS | 60.0% | |
| TATTGCCGCTGCCGCCTCAA+TGG | - | chr1.3:43260594-43260613 | MS.gene81770:CDS | 60.0% | |
| TGTTCCCATTGAGGCGGCAG+CGG | + | chr1.3:43260602-43260621 | None:intergenic | 60.0% | |
| AGCCTTGGTCCAGGCGCATG+GGG | + | chr1.3:43260861-43260880 | None:intergenic | 65.0% | |
| AGGCGCATGGGGGCGAATGA+TGG | + | chr1.3:43260850-43260869 | None:intergenic | 65.0% | |
| ATCATTCGCCCCCATGCGCC+TGG | - | chr1.3:43260849-43260868 | MS.gene81770:CDS | 65.0% | |
| GCCTTGGTCCAGGCGCATGG+GGG | + | chr1.3:43260860-43260879 | None:intergenic | 70.0% | |
| GCCCCCATGCGCCTGGACCA+AGG | - | chr1.3:43260856-43260875 | MS.gene81770:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 43260451 | 43261289 | 43260451 | ID=MS.gene81770 |
| chr1.3 | mRNA | 43260451 | 43261289 | 43260451 | ID=MS.gene81770.t1;Parent=MS.gene81770 |
| chr1.3 | exon | 43261045 | 43261289 | 43261045 | ID=MS.gene81770.t1.exon1;Parent=MS.gene81770.t1 |
| chr1.3 | CDS | 43261045 | 43261289 | 43261045 | ID=cds.MS.gene81770.t1;Parent=MS.gene81770.t1 |
| chr1.3 | exon | 43260838 | 43260961 | 43260838 | ID=MS.gene81770.t1.exon2;Parent=MS.gene81770.t1 |
| chr1.3 | CDS | 43260838 | 43260961 | 43260838 | ID=cds.MS.gene81770.t1;Parent=MS.gene81770.t1 |
| chr1.3 | exon | 43260451 | 43260666 | 43260451 | ID=MS.gene81770.t1.exon3;Parent=MS.gene81770.t1 |
| chr1.3 | CDS | 43260451 | 43260666 | 43260451 | ID=cds.MS.gene81770.t1;Parent=MS.gene81770.t1 |
| Gene Sequence |
| Protein sequence |
