Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81774.t1 | XP_013467943.1 | 95.9 | 196 | 8 | 0 | 1 | 196 | 1 | 196 | 1.10E-92 | 349.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81774.t1 | P0DI40 | 78.1 | 196 | 39 | 1 | 1 | 196 | 1 | 192 | 1.5e-77 | 290.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81774.t1 | A0A072VV58 | 95.9 | 196 | 8 | 0 | 1 | 196 | 1 | 196 | 8.0e-93 | 349.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04926 | MS.gene81774 | 0.806486 | 8.04E-50 | -1.69E-46 |
| MS.gene04932 | MS.gene81774 | 0.837266 | 5.75E-57 | -1.69E-46 |
| MS.gene049549 | MS.gene81774 | 0.823323 | 1.47E-53 | -1.69E-46 |
| MS.gene050133 | MS.gene81774 | 0.814764 | 1.31E-51 | -1.69E-46 |
| MS.gene050426 | MS.gene81774 | 0.80259 | 5.22E-49 | -1.69E-46 |
| MS.gene050809 | MS.gene81774 | 0.81196 | 5.39E-51 | -1.69E-46 |
| MS.gene05104 | MS.gene81774 | 0.811996 | 5.29E-51 | -1.69E-46 |
| MS.gene051131 | MS.gene81774 | 0.810167 | 1.32E-50 | -1.69E-46 |
| MS.gene051439 | MS.gene81774 | 0.811896 | 5.57E-51 | -1.69E-46 |
| MS.gene051525 | MS.gene81774 | -0.804515 | 2.08E-49 | -1.69E-46 |
| MS.gene051552 | MS.gene81774 | 0.801978 | 6.98E-49 | -1.69E-46 |
| MS.gene051996 | MS.gene81774 | 0.842383 | 2.67E-58 | -1.69E-46 |
| MS.gene052211 | MS.gene81774 | 0.812181 | 4.82E-51 | -1.69E-46 |
| MS.gene052223 | MS.gene81774 | 0.845141 | 4.89E-59 | -1.69E-46 |
| MS.gene05240 | MS.gene81774 | 0.873799 | 1.11E-67 | -1.69E-46 |
| MS.gene05244 | MS.gene81774 | 0.818022 | 2.43E-52 | -1.69E-46 |
| MS.gene052501 | MS.gene81774 | -0.803823 | 2.90E-49 | -1.69E-46 |
| MS.gene052503 | MS.gene81774 | -0.803959 | 2.72E-49 | -1.69E-46 |
| MS.gene052505 | MS.gene81774 | -0.80822 | 3.45E-50 | -1.69E-46 |
| MS.gene052702 | MS.gene81774 | 0.822016 | 2.97E-53 | -1.69E-46 |
| MS.gene052705 | MS.gene81774 | 0.813106 | 3.03E-51 | -1.69E-46 |
| MS.gene052706 | MS.gene81774 | 0.8103 | 1.23E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene81774 | -0.80743 | 5.07E-50 | -1.69E-46 |
| MS.gene053406 | MS.gene81774 | 0.804632 | 1.97E-49 | -1.69E-46 |
| MS.gene054107 | MS.gene81774 | -0.808626 | 2.82E-50 | -1.69E-46 |
| MS.gene054138 | MS.gene81774 | 0.819609 | 1.06E-52 | -1.69E-46 |
| MS.gene054147 | MS.gene81774 | 0.816744 | 4.72E-52 | -1.69E-46 |
| MS.gene054277 | MS.gene81774 | 0.881607 | 2.09E-70 | -1.69E-46 |
| MS.gene054742 | MS.gene81774 | 0.916635 | 1.40E-85 | -1.69E-46 |
| MS.gene055215 | MS.gene81774 | 0.860265 | 2.33E-63 | -1.69E-46 |
| MS.gene055911 | MS.gene81774 | -0.803014 | 4.27E-49 | -1.69E-46 |
| MS.gene056076 | MS.gene81774 | 0.818303 | 2.10E-52 | -1.69E-46 |
| MS.gene056330 | MS.gene81774 | 0.886702 | 2.72E-72 | -1.69E-46 |
| MS.gene056514 | MS.gene81774 | -0.814302 | 1.65E-51 | -1.69E-46 |
| MS.gene056590 | MS.gene81774 | 0.84635 | 2.30E-59 | -1.69E-46 |
| MS.gene056591 | MS.gene81774 | 0.846045 | 2.78E-59 | -1.69E-46 |
| MS.gene056680 | MS.gene81774 | 0.837473 | 5.09E-57 | -1.69E-46 |
| MS.gene056688 | MS.gene81774 | 0.809477 | 1.86E-50 | -1.69E-46 |
| MS.gene056690 | MS.gene81774 | 0.811553 | 6.61E-51 | -1.69E-46 |
| MS.gene056691 | MS.gene81774 | 0.812117 | 4.98E-51 | -1.69E-46 |
| MS.gene056697 | MS.gene81774 | 0.812106 | 5.01E-51 | -1.69E-46 |
| MS.gene056715 | MS.gene81774 | 0.808329 | 3.27E-50 | -1.69E-46 |
| MS.gene056748 | MS.gene81774 | 0.805012 | 1.64E-49 | -1.69E-46 |
| MS.gene056920 | MS.gene81774 | 0.964539 | 1.87E-123 | -1.69E-46 |
| MS.gene056922 | MS.gene81774 | 0.877471 | 6.12E-69 | -1.69E-46 |
| MS.gene056923 | MS.gene81774 | 0.881778 | 1.81E-70 | -1.69E-46 |
| MS.gene056924 | MS.gene81774 | 0.882812 | 7.61E-71 | -1.69E-46 |
| MS.gene056925 | MS.gene81774 | 0.844312 | 8.17E-59 | -1.69E-46 |
| MS.gene057261 | MS.gene81774 | 0.835662 | 1.47E-56 | -1.69E-46 |
| MS.gene057544 | MS.gene81774 | 0.852051 | 5.95E-61 | -1.69E-46 |
| MS.gene057856 | MS.gene81774 | -0.809781 | 1.60E-50 | -1.69E-46 |
| MS.gene058093 | MS.gene81774 | 0.804629 | 1.97E-49 | -1.69E-46 |
| MS.gene058381 | MS.gene81774 | 0.809247 | 2.08E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene81774 | 0.85182 | 6.92E-61 | -1.69E-46 |
| MS.gene059891 | MS.gene81774 | 0.810888 | 9.21E-51 | -1.69E-46 |
| MS.gene059953 | MS.gene81774 | 0.800929 | 1.14E-48 | -1.69E-46 |
| MS.gene059955 | MS.gene81774 | 0.820068 | 8.34E-53 | -1.69E-46 |
| MS.gene060087 | MS.gene81774 | 0.890357 | 1.06E-73 | -1.69E-46 |
| MS.gene060205 | MS.gene81774 | 0.803677 | 3.11E-49 | -1.69E-46 |
| MS.gene060578 | MS.gene81774 | 0.805777 | 1.13E-49 | -1.69E-46 |
| MS.gene061038 | MS.gene81774 | 0.806432 | 8.25E-50 | -1.69E-46 |
| MS.gene061092 | MS.gene81774 | 0.804424 | 2.17E-49 | -1.69E-46 |
| MS.gene061094 | MS.gene81774 | 0.813682 | 2.26E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene81774 | MS.gene26200 | PPI |
| MS.gene81774 | MS.gene017305 | PPI |
| MS.gene061583 | MS.gene81774 | PPI |
| MS.gene008354 | MS.gene81774 | PPI |
| MS.gene81774 | MS.gene81804 | PPI |
| MS.gene05032 | MS.gene81774 | PPI |
| MS.gene81774 | MS.gene049677 | PPI |
| MS.gene81774 | MS.gene05033 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81774.t1 | MTR_1g058540 | 95.918 | 196 | 8 | 0 | 1 | 196 | 1 | 196 | 2.61e-120 | 338 |
| MS.gene81774.t1 | MTR_1g058570 | 77.041 | 196 | 43 | 1 | 1 | 196 | 1 | 194 | 3.19e-93 | 270 |
| MS.gene81774.t1 | MTR_1g058560 | 80.102 | 196 | 38 | 1 | 1 | 196 | 1 | 195 | 1.15e-91 | 266 |
| MS.gene81774.t1 | MTR_2g086740 | 52.857 | 210 | 83 | 1 | 2 | 195 | 10 | 219 | 2.30e-59 | 185 |
| MS.gene81774.t1 | MTR_7g011090 | 45.263 | 190 | 100 | 1 | 7 | 196 | 1 | 186 | 3.33e-52 | 166 |
| MS.gene81774.t1 | MTR_4g081880 | 42.197 | 173 | 100 | 0 | 23 | 195 | 14 | 186 | 2.16e-47 | 154 |
| MS.gene81774.t1 | MTR_5g041900 | 40.722 | 194 | 102 | 2 | 4 | 196 | 5 | 186 | 1.46e-41 | 139 |
| MS.gene81774.t1 | MTR_2g086740 | 49.645 | 141 | 55 | 1 | 2 | 126 | 10 | 150 | 6.56e-34 | 118 |
| MS.gene81774.t1 | MTR_0004s0210 | 34.615 | 156 | 87 | 4 | 37 | 189 | 7 | 150 | 4.06e-18 | 77.8 |
| MS.gene81774.t1 | MTR_0097s0070 | 34.167 | 120 | 73 | 3 | 73 | 189 | 69 | 185 | 1.64e-12 | 63.9 |
| MS.gene81774.t1 | MTR_3g064310 | 27.564 | 156 | 96 | 3 | 42 | 193 | 49 | 191 | 4.83e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81774.t1 | AT2G36100 | 54.950 | 202 | 84 | 2 | 2 | 196 | 5 | 206 | 3.24e-68 | 207 |
| MS.gene81774.t1 | AT3G11550 | 60.500 | 200 | 74 | 1 | 2 | 196 | 5 | 204 | 2.73e-64 | 197 |
| MS.gene81774.t1 | AT2G27370 | 55.978 | 184 | 74 | 1 | 12 | 195 | 43 | 219 | 6.75e-64 | 197 |
| MS.gene81774.t1 | AT5G06200 | 58.586 | 198 | 77 | 2 | 2 | 195 | 5 | 201 | 1.03e-63 | 196 |
| MS.gene81774.t1 | AT5G15290 | 44.000 | 150 | 84 | 0 | 27 | 176 | 17 | 166 | 4.56e-44 | 145 |
| MS.gene81774.t1 | AT1G14160 | 40.000 | 165 | 99 | 0 | 32 | 196 | 45 | 209 | 8.32e-42 | 140 |
| MS.gene81774.t1 | AT1G03700 | 30.769 | 169 | 99 | 3 | 21 | 189 | 1 | 151 | 1.95e-17 | 76.3 |
| MS.gene81774.t1 | AT1G17200 | 26.984 | 189 | 125 | 5 | 9 | 193 | 2 | 181 | 2.36e-14 | 68.9 |
| MS.gene81774.t1 | AT4G03540 | 32.258 | 124 | 75 | 2 | 55 | 178 | 26 | 140 | 1.06e-13 | 66.2 |
| MS.gene81774.t1 | AT3G06390 | 27.820 | 133 | 91 | 2 | 38 | 165 | 37 | 169 | 5.71e-11 | 59.7 |
Find 43 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCCATTTGCAACCAATT+TGG | 0.187527 | 1.3:-43232665 | MS.gene81774:CDS |
| GTTGGTTGTGATGTCTTCTT+TGG | 0.281389 | 1.3:-43232576 | MS.gene81774:CDS |
| GTGATGTCTTCTTTGGCTCT+TGG | 0.299534 | 1.3:-43232569 | MS.gene81774:CDS |
| TCTTAGAACAAAATCCATTA+TGG | 0.318159 | 1.3:+43233732 | None:intergenic |
| ATGATGGTTACTATGGAAAA+TGG | 0.329026 | 1.3:+43233323 | None:intergenic |
| TGATGTCTTCTTTGGCTCTT+GGG | 0.348436 | 1.3:-43232568 | MS.gene81774:CDS |
| AGCAGCTGCCATGGTTTACT+TGG | 0.359773 | 1.3:-43232717 | MS.gene81774:CDS |
| GGCATTTGTGGGTGGCTACC+TGG | 0.401958 | 1.3:-43233357 | MS.gene81774:CDS |
| AATGTCAACCACTATTGATA+TGG | 0.415102 | 1.3:-43233839 | MS.gene81774:CDS |
| AGGGCGAATGATGGTTACTA+TGG | 0.422728 | 1.3:+43233316 | None:intergenic |
| CATAACTAGCTTCAAATTGA+AGG | 0.426220 | 1.3:+43233629 | None:intergenic |
| ATTGGAGCCACTGCAAGGCC+TGG | 0.429435 | 1.3:-43233775 | MS.gene81774:CDS |
| ATGGCAATCAAGACTCAAAC+TGG | 0.433393 | 1.3:-43232688 | MS.gene81774:CDS |
| ATCTCCAAATTGGTTGCAAA+TGG | 0.439108 | 1.3:+43232661 | None:intergenic |
| TGTTATTGCAATGGCATTTG+TGG | 0.446696 | 1.3:-43233369 | MS.gene81774:CDS |
| GTTATTGCAATGGCATTTGT+GGG | 0.458726 | 1.3:-43233368 | MS.gene81774:CDS |
| TGATTCTGCCATATCAATAG+TGG | 0.478795 | 1.3:+43233831 | None:intergenic |
| ATCATTCGCCCTCATGCACC+TGG | 0.484461 | 1.3:-43233305 | MS.gene81774:CDS |
| TGGTTACTATGGAAAATGGT+AGG | 0.486275 | 1.3:+43233327 | None:intergenic |
| TGGTGCTTCAGCAGCTGCCA+TGG | 0.489524 | 1.3:-43232726 | MS.gene81774:CDS |
| TGAAGGAACTGAGTGAAGAA+AGG | 0.493692 | 1.3:+43233646 | None:intergenic |
| CCACTGCAAGGCCTGGAGGA+TGG | 0.524990 | 1.3:-43233768 | MS.gene81774:CDS |
| TGCAGCAAGAGAAGCTGCTA+TGG | 0.527344 | 1.3:+43233702 | None:intergenic |
| CCATCCTCCAGGCCTTGCAG+TGG | 0.532661 | 1.3:+43233768 | None:intergenic |
| ATGAGGAAAAGCCTTGGTCC+AGG | 0.542585 | 1.3:+43233287 | None:intergenic |
| CTTTAATTGGAGCCACTGCA+AGG | 0.554612 | 1.3:-43233780 | MS.gene81774:CDS |
| GGTTACTATGGAAAATGGTA+GGG | 0.561081 | 1.3:+43233328 | None:intergenic |
| AGCCTTGGTCCAGGTGCATG+AGG | 0.573726 | 1.3:+43233296 | None:intergenic |
| AGGTGCATGAGGGCGAATGA+TGG | 0.573876 | 1.3:+43233307 | None:intergenic |
| GCCCTCATGCACCTGGACCA+AGG | 0.587519 | 1.3:-43233298 | MS.gene81774:CDS |
| TGCTGAAGCACCACTAGCAG+TGG | 0.592321 | 1.3:+43232736 | None:intergenic |
| AATCTGATCACTAGTTGCCA+TGG | 0.596028 | 1.3:+43233672 | None:intergenic |
| ATTGCAATGGCATTTGTGGG+TGG | 0.596308 | 1.3:-43233365 | MS.gene81774:CDS |
| ATGACATTAGCCACTGCTAG+TGG | 0.602800 | 1.3:-43232746 | MS.gene81774:CDS |
| TTACCGTGTCTGCGATGATG+AGG | 0.605858 | 1.3:+43233270 | None:intergenic |
| ATGGTTTACTTGGCACACAA+TGG | 0.608727 | 1.3:-43232707 | MS.gene81774:CDS |
| GCGATGATGAGGAAAAGCCT+TGG | 0.613791 | 1.3:+43233281 | None:intergenic |
| TTTCCTCATCATCGCAGACA+CGG | 0.615275 | 1.3:-43233273 | MS.gene81774:intron |
| GCCTTGGTCCAGGTGCATGA+GGG | 0.623258 | 1.3:+43233297 | None:intergenic |
| GGAGCCACTGCAAGGCCTGG+AGG | 0.665040 | 1.3:-43233772 | MS.gene81774:CDS |
| TCTTGCTGCAACTATCACCA+TGG | 0.694318 | 1.3:-43233689 | MS.gene81774:CDS |
| AAAATGGTAGGGATAAGACC+AGG | 0.708096 | 1.3:+43233339 | None:intergenic |
| ATTGTGTGCCAAGTAAACCA+TGG | 0.791669 | 1.3:+43232709 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATCAATAAAGCAA+TGG | + | chr1.3:43233317-43233336 | None:intergenic | 15.0% |
| !! | ACTCTAATTAAGAATTAATT+AGG | + | chr1.3:43233168-43233187 | None:intergenic | 15.0% |
| !! | TAAGAATTAATTAGGAAATT+AGG | + | chr1.3:43233160-43233179 | None:intergenic | 15.0% |
| !! | TCATGTAAAAAAAATTTGAA+GGG | + | chr1.3:43233211-43233230 | None:intergenic | 15.0% |
| !! | TTCATGTAAAAAAAATTTGA+AGG | + | chr1.3:43233212-43233231 | None:intergenic | 15.0% |
| !!! | AAATTATTTGTTTAAGTTAG+AGG | + | chr1.3:43232829-43232848 | None:intergenic | 15.0% |
| !!! | AGAAACTATTATTTTAAAAG+TGG | - | chr1.3:43233541-43233560 | MS.gene81774:intron | 15.0% |
| !! | AATGTTTATTGTAAATATGC+AGG | - | chr1.3:43233000-43233019 | MS.gene81774:intron | 20.0% |
| !! | ATGAACATATATATTCTAGT+AGG | - | chr1.3:43233227-43233246 | MS.gene81774:intron | 20.0% |
| !!! | GTTAAGTACTTTTAAAAAAC+TGG | - | chr1.3:43233512-43233531 | MS.gene81774:intron | 20.0% |
| ! | AATGAGGAAATGAACTATTA+AGG | - | chr1.3:43233427-43233446 | MS.gene81774:intron | 25.0% |
| ! | GGTCATTTGAAAATAAATAG+AGG | + | chr1.3:43233296-43233315 | None:intergenic | 25.0% |
| ! | TCTTAGAACAAAATCCATTA+TGG | + | chr1.3:43232668-43232687 | None:intergenic | 25.0% |
| !! | AATGAAAAAGCTGCTTTAAT+TGG | - | chr1.3:43232604-43232623 | MS.gene81774:CDS | 25.0% |
| !!! | ATGGATTTTGTTCTAAGATT+AGG | - | chr1.3:43232670-43232689 | MS.gene81774:CDS | 25.0% |
| ATGATGGTTACTATGGAAAA+TGG | + | chr1.3:43233077-43233096 | None:intergenic | 30.0% | |
| ATTACTCCTTGTGTTTCTTT+CGG | - | chr1.3:43233270-43233289 | MS.gene81774:intron | 30.0% | |
| GAAGATAAATTGCTACAATG+AGG | - | chr1.3:43233411-43233430 | MS.gene81774:intron | 30.0% | |
| TAATGTCATAAACACCTACA+CGG | + | chr1.3:43233640-43233659 | None:intergenic | 30.0% | |
| TGGACTAAATAAATACACCT+AGG | + | chr1.3:43232874-43232893 | None:intergenic | 30.0% | |
| ! | AATACACCTAGGTTTTACAA+TGG | + | chr1.3:43232863-43232882 | None:intergenic | 30.0% |
| ! | CATAACTAGCTTCAAATTGA+AGG | + | chr1.3:43232771-43232790 | None:intergenic | 30.0% |
| ! | GTGTAGTTCAAATTTTGTGT+TGG | + | chr1.3:43232894-43232913 | None:intergenic | 30.0% |
| !!! | CAGGTTTTTTGTTATTGCAA+TGG | - | chr1.3:43233019-43233038 | MS.gene81774:intron | 30.0% |
| !!! | TATTGCTGTGGTTGTTTTAA+TGG | - | chr1.3:43233797-43233816 | MS.gene81774:CDS | 30.0% |
| ATCTCCAAATTGGTTGCAAA+TGG | + | chr1.3:43233739-43233758 | None:intergenic | 35.0% | |
| GAGCACAAAAATCTCCAAAT+TGG | + | chr1.3:43233749-43233768 | None:intergenic | 35.0% | |
| GAGGTTTAAATGTGACATAC+TGG | + | chr1.3:43232810-43232829 | None:intergenic | 35.0% | |
| GGTTACTATGGAAAATGGTA+GGG | + | chr1.3:43233072-43233091 | None:intergenic | 35.0% | |
| GTTATTGCAATGGCATTTGT+GGG | - | chr1.3:43233029-43233048 | MS.gene81774:intron | 35.0% | |
| TGATTCTGCCATATCAATAG+TGG | + | chr1.3:43232569-43232588 | None:intergenic | 35.0% | |
| TGGTTACTATGGAAAATGGT+AGG | + | chr1.3:43233073-43233092 | None:intergenic | 35.0% | |
| TGTTATTGCAATGGCATTTG+TGG | - | chr1.3:43233028-43233047 | MS.gene81774:intron | 35.0% | |
| ! | AAACTCAAACTTTTCCGTGT+AGG | - | chr1.3:43233623-43233642 | MS.gene81774:CDS | 35.0% |
| ! | GAAAAAAGGCATAGCCATAA+TGG | - | chr1.3:43232651-43232670 | MS.gene81774:CDS | 35.0% |
| ! | GATTTTTGTGCTCAAACAAG+TGG | - | chr1.3:43233756-43233775 | MS.gene81774:CDS | 35.0% |
| !! | TGTGTCATGTTTTATTGCTG+TGG | - | chr1.3:43233785-43233804 | MS.gene81774:CDS | 35.0% |
| !!! | TGTGGTTGTTTTAATGGTGT+TGG | - | chr1.3:43233803-43233822 | MS.gene81774:CDS | 35.0% |
| AAAATGGTAGGGATAAGACC+AGG | + | chr1.3:43233061-43233080 | None:intergenic | 40.0% | |
| AATCTGATCACTAGTTGCCA+TGG | + | chr1.3:43232728-43232747 | None:intergenic | 40.0% | |
| ATGGCAATCAAGACTCAAAC+TGG | - | chr1.3:43233709-43233728 | MS.gene81774:CDS | 40.0% | |
| ATGGTTTACTTGGCACACAA+TGG | - | chr1.3:43233690-43233709 | MS.gene81774:CDS | 40.0% | |
| ATTGTGTGCCAAGTAAACCA+TGG | + | chr1.3:43233691-43233710 | None:intergenic | 40.0% | |
| GTTGGTTGTGATGTCTTCTT+TGG | - | chr1.3:43233821-43233840 | MS.gene81774:CDS | 40.0% | |
| TGAAGGAACTGAGTGAAGAA+AGG | + | chr1.3:43232754-43232773 | None:intergenic | 40.0% | |
| ! | ACACCTAGGTTTTACAATGG+AGG | + | chr1.3:43232860-43232879 | None:intergenic | 40.0% |
| ! | CACCTAGGTTTTACAATGGA+GGG | + | chr1.3:43232859-43232878 | None:intergenic | 40.0% |
| ! | CTTGCCATTTGCAACCAATT+TGG | - | chr1.3:43233732-43233751 | MS.gene81774:CDS | 40.0% |
| !! | TGATGTCTTCTTTGGCTCTT+GGG | - | chr1.3:43233829-43233848 | MS.gene81774:CDS | 40.0% |
| AGGGCGAATGATGGTTACTA+TGG | + | chr1.3:43233084-43233103 | None:intergenic | 45.0% | |
| ATGACATTAGCCACTGCTAG+TGG | - | chr1.3:43233651-43233670 | MS.gene81774:CDS | 45.0% | |
| ATTGCAATGGCATTTGTGGG+TGG | - | chr1.3:43233032-43233051 | MS.gene81774:intron | 45.0% | |
| CTCCCTCCATTGTAAAACCT+AGG | - | chr1.3:43232854-43232873 | MS.gene81774:intron | 45.0% | |
| CTTTAATTGGAGCCACTGCA+AGG | - | chr1.3:43232617-43232636 | MS.gene81774:CDS | 45.0% | |
| TAGAGGCCGAAAGAAACACA+AGG | + | chr1.3:43233279-43233298 | None:intergenic | 45.0% | |
| TCTTGCTGCAACTATCACCA+TGG | - | chr1.3:43232708-43232727 | MS.gene81774:CDS | 45.0% | |
| TTTCCTCATCATCGCAGACA+CGG | - | chr1.3:43233124-43233143 | MS.gene81774:intron | 45.0% | |
| !! | GTGATGTCTTCTTTGGCTCT+TGG | - | chr1.3:43233828-43233847 | MS.gene81774:CDS | 45.0% |
| !!! | ATGCCTTTTTTCCATCCTCC+AGG | + | chr1.3:43232643-43232662 | None:intergenic | 45.0% |
| AGCAGCTGCCATGGTTTACT+TGG | - | chr1.3:43233680-43233699 | MS.gene81774:CDS | 50.0% | |
| AGGCCTGGAGGATGGAAAAA+AGG | - | chr1.3:43232637-43232656 | MS.gene81774:CDS | 50.0% | |
| ATGAGGAAAAGCCTTGGTCC+AGG | + | chr1.3:43233113-43233132 | None:intergenic | 50.0% | |
| GCGATGATGAGGAAAAGCCT+TGG | + | chr1.3:43233119-43233138 | None:intergenic | 50.0% | |
| TGCAGCAAGAGAAGCTGCTA+TGG | + | chr1.3:43232698-43232717 | None:intergenic | 50.0% | |
| TTACCGTGTCTGCGATGATG+AGG | + | chr1.3:43233130-43233149 | None:intergenic | 50.0% | |
| AGGTGCATGAGGGCGAATGA+TGG | + | chr1.3:43233093-43233112 | None:intergenic | 55.0% | |
| ATCATTCGCCCTCATGCACC+TGG | - | chr1.3:43233092-43233111 | MS.gene81774:intron | 55.0% | |
| ! | TGCTGAAGCACCACTAGCAG+TGG | + | chr1.3:43233664-43233683 | None:intergenic | 55.0% |
| AGCCTTGGTCCAGGTGCATG+AGG | + | chr1.3:43233104-43233123 | None:intergenic | 60.0% | |
| ATTGGAGCCACTGCAAGGCC+TGG | - | chr1.3:43232622-43232641 | MS.gene81774:CDS | 60.0% | |
| GCCTTGGTCCAGGTGCATGA+GGG | + | chr1.3:43233103-43233122 | None:intergenic | 60.0% | |
| GGCATTTGTGGGTGGCTACC+TGG | - | chr1.3:43233040-43233059 | MS.gene81774:intron | 60.0% | |
| TGGTGCTTCAGCAGCTGCCA+TGG | - | chr1.3:43233671-43233690 | MS.gene81774:CDS | 60.0% | |
| CCACTGCAAGGCCTGGAGGA+TGG | - | chr1.3:43232629-43232648 | MS.gene81774:CDS | 65.0% | |
| CCATCCTCCAGGCCTTGCAG+TGG | + | chr1.3:43232632-43232651 | None:intergenic | 65.0% | |
| GCCCTCATGCACCTGGACCA+AGG | - | chr1.3:43233099-43233118 | MS.gene81774:intron | 65.0% | |
| GGAGCCACTGCAAGGCCTGG+AGG | - | chr1.3:43232625-43232644 | MS.gene81774:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 43232559 | 43233860 | 43232559 | ID=MS.gene81774 |
| chr1.3 | mRNA | 43232559 | 43233860 | 43232559 | ID=MS.gene81774.t1;Parent=MS.gene81774 |
| chr1.3 | exon | 43233610 | 43233860 | 43233610 | ID=MS.gene81774.t1.exon1;Parent=MS.gene81774.t1 |
| chr1.3 | CDS | 43233610 | 43233860 | 43233610 | ID=cds.MS.gene81774.t1;Parent=MS.gene81774.t1 |
| chr1.3 | exon | 43233274 | 43233397 | 43233274 | ID=MS.gene81774.t1.exon2;Parent=MS.gene81774.t1 |
| chr1.3 | CDS | 43233274 | 43233397 | 43233274 | ID=cds.MS.gene81774.t1;Parent=MS.gene81774.t1 |
| chr1.3 | exon | 43232559 | 43232774 | 43232559 | ID=MS.gene81774.t1.exon3;Parent=MS.gene81774.t1 |
| chr1.3 | CDS | 43232559 | 43232774 | 43232559 | ID=cds.MS.gene81774.t1;Parent=MS.gene81774.t1 |
| Gene Sequence |
| Protein sequence |
