AlfalfaGEDB | MS.gene009829

M. sativa cultivar XinJiangDaYe / MS.gene009829

KEGG: K01953
GO: GO:0003674 GO:0003824 GO:0004066 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0032787 GO:0034641 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
PFAM: PF00733.24 PF13537.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009829.t1	XP_003615711.1	99.6	557	2	0	3	559	28	584	0.00E+00	1157.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009829.t1	P19252	94.8	556	28	1	3	558	28	582	0.0e+00	1103.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009829.t1	G7JZK0	99.6	557	2	0	3	559	28	584	0.0e+00	1157.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene009829	MS.gene41176	PPI
MS.gene009829	MS.gene052122	PPI
MS.gene009829	MS.gene45489	PPI
MS.gene009829	MS.gene004045	PPI
MS.gene009829	MS.gene052207	PPI
MS.gene009829	MS.gene071169	PPI
MS.gene009829	MS.gene75475	PPI
MS.gene009829	MS.gene30955	PPI
MS.gene009829	MS.gene045117	PPI
MS.gene009829	MS.gene31156	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009829.t1	MTR_5g071360	99.641	557	2	0	3	559	28	584	0.0	1160
MS.gene009829.t1	MTR_5g071360	99.586	483	2	0	3	485	28	510	0.0	1012
MS.gene009829.t1	MTR_3g464580	86.225	559	75	2	3	559	28	586	0.0	1011
MS.gene009829.t1	MTR_3g087220	78.450	529	114	0	3	531	28	556	0.0	900
MS.gene009829.t1	MTR_3g464580	87.759	482	58	1	3	483	28	509	0.0	898
MS.gene009829.t1	MTR_3g464580	87.411	421	51	2	3	422	28	447	0.0	776
MS.gene009829.t1	MTR_5g069310	93.662	142	9	0	418	559	2	143	2.86e-93	281

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene009829.t1	AT3G47340	83.060	549	86	1	2	550	27	568	974
MS.gene009829.t1	AT5G10240	79.190	543	113	0	3	545	28	570	929
MS.gene009829.t1	AT5G10240	78.637	543	115	1	3	545	28	569	918
MS.gene009829.t1	AT5G65010	80.115	523	104	0	3	525	28	550	912
MS.gene009829.t1	AT5G65010	80.153	524	103	1	3	525	28	551	910
MS.gene009829.t1	AT3G47340	85.447	481	70	0	3	483	28	508	885
MS.gene009829.t1	AT3G47340	85.166	391	58	0	2	392	27	417	720
MS.gene009829.t1	AT3G47340	86.711	301	40	0	92	392	2	302	562

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Find 141 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAGTCACCATGTTGG+TGG	0.543353	5.3:+56633602	None:intergenic
AAACTACACTCATTCTGTGT+TGG	0.506077	5.3:-56631995	MS.gene009829:CDS
AAAGAAGTTGCAGACTACCT+AGG	0.604439	5.3:-56631826	MS.gene009829:CDS
AAATGGGTAATCTCTGGTGA+AGG	0.594753	5.3:-56631393	MS.gene009829:CDS
AACTTCCCTATACATTGGTT+GGG	0.395146	5.3:-56632793	MS.gene009829:CDS
AAGATGGTGGATTTCGAAGA+TGG	0.512006	5.3:-56632581	MS.gene009829:CDS
AAGGCATGCCTCAAAGCTAG+AGG	0.643083	5.3:+56632510	None:intergenic
AAGTTGATTTATTGGCTCTC+TGG	0.421158	5.3:+56631173	None:intergenic
AATTACTTAGTACCTTTGGC+AGG	0.501660	5.3:+56630832	None:intergenic
ACCAAAGCTGCTGAGCAATG+GGG	0.728934	5.3:-56632022	MS.gene009829:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTCTCGGTACATAATT+GGG	-	chr5.3:56631527-56631546	MS.gene009829:intron	30.0%
AAATGTTTCCGCAAAGTAAA+CGG	-	chr5.3:56633036-56633055	MS.gene009829:CDS	30.0%
ACTGGAATATGAATTGTACT+TGG	-	chr5.3:56630782-56630801	MS.gene009829:intron	30.0%
AGCAAATTACTTAGTACCTT+TGG	+	chr5.3:56633171-56633190	None:intergenic	30.0%
AGTGTTTCTTGTACAAATCT+TGG	-	chr5.3:56633005-56633024	MS.gene009829:intron	30.0%
CACGAAATTGTAGAGTTAAA+AGG	+	chr5.3:56633361-56633380	None:intergenic	30.0%
CATGATTTCAAATGACACAT+TGG	-	chr5.3:56631834-56631853	MS.gene009829:CDS	30.0%
CATGTCTATGTGTATTTCAT+AGG	-	chr5.3:56630698-56630717	MS.gene009829:CDS	30.0%
CTTGATTAGTATGAGGAATA+TGG	-	chr5.3:56631084-56631103	MS.gene009829:intron	30.0%
GATTTGTCTTCATTAAAGAG+AGG	+	chr5.3:56630467-56630486	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	56629947	56634071	56629947	ID=MS.gene009829
chr5.3	mRNA	56629947	56634071	56629947	ID=MS.gene009829.t1;Parent=MS.gene009829
chr5.3	exon	56634060	56634071	56634060	ID=MS.gene009829.t1.exon1;Parent=MS.gene009829.t1
chr5.3	CDS	56634060	56634071	56634060	ID=cds.MS.gene009829.t1;Parent=MS.gene009829.t1
chr5.3	exon	56633519	56633650	56633519	ID=MS.gene009829.t1.exon2;Parent=MS.gene009829.t1
chr5.3	CDS	56633519	56633650	56633519	ID=cds.MS.gene009829.t1;Parent=MS.gene009829.t1
chr5.3	exon	56633019	56633114	56633019	ID=MS.gene009829.t1.exon3;Parent=MS.gene009829.t1
chr5.3	CDS	56633019	56633114	56633019	ID=cds.MS.gene009829.t1;Parent=MS.gene009829.t1
chr5.3	exon	56632784	56632925	56632784	ID=MS.gene009829.t1.exon4;Parent=MS.gene009829.t1
chr5.3	CDS	56632784	56632925	56632784	ID=cds.MS.gene009829.t1;Parent=MS.gene009829.t1
chr5.3	exon	56632503	56632693	56632503	ID=MS.gene009829.t1.exon5;Parent=MS.gene009829.t1
chr5.3	CDS	56632503	56632693	56632503	ID=cds.MS.gene009829.t1;Parent=MS.gene009829.t1
chr5.3	exon	56631988	56632149	56631988	ID=MS.gene009829.t1.exon6;Parent=MS.gene009829.t1
chr5.3	CDS	56631988	56632149	56631988	ID=cds.MS.gene009829.t1;Parent=MS.gene009829.t1
chr5.3	exon	56631792	56631872	56631792	ID=MS.gene009829.t1.exon7;Parent=MS.gene009829.t1
chr5.3	CDS	56631792	56631872	56631792	ID=cds.MS.gene009829.t1;Parent=MS.gene009829.t1
chr5.3	exon	56631311	56631532	56631311	ID=MS.gene009829.t1.exon8;Parent=MS.gene009829.t1
chr5.3	CDS	56631311	56631532	56631311	ID=cds.MS.gene009829.t1;Parent=MS.gene009829.t1
chr5.3	exon	56631087	56631221	56631087	ID=MS.gene009829.t1.exon9;Parent=MS.gene009829.t1
chr5.3	CDS	56631087	56631221	56631087	ID=cds.MS.gene009829.t1;Parent=MS.gene009829.t1
chr5.3	exon	56630845	56630925	56630845	ID=MS.gene009829.t1.exon10;Parent=MS.gene009829.t1
chr5.3	CDS	56630845	56630925	56630845	ID=cds.MS.gene009829.t1;Parent=MS.gene009829.t1
chr5.3	exon	56630674	56630760	56630674	ID=MS.gene009829.t1.exon11;Parent=MS.gene009829.t1
chr5.3	CDS	56630674	56630760	56630674	ID=cds.MS.gene009829.t1;Parent=MS.gene009829.t1
chr5.3	exon	56630466	56630573	56630466	ID=MS.gene009829.t1.exon12;Parent=MS.gene009829.t1
chr5.3	CDS	56630466	56630573	56630466	ID=cds.MS.gene009829.t1;Parent=MS.gene009829.t1
chr5.3	exon	56629947	56630177	56629947	ID=MS.gene009829.t1.exon13;Parent=MS.gene009829.t1
chr5.3	CDS	56629947	56630177	56629947	ID=cds.MS.gene009829.t1;Parent=MS.gene009829.t1

Gene Sequence

>MS.gene009829

ATGGAATTATCGGTAAATTTTTTAGTGGGAGCTATGAACAATTCAAAGGAGCAATGACAATTGAACAACAAAGATTAAAAGGAGTTAAATAATTGTAGAACTATATTCTTTTTTCCTTATGCTAATACTTATTCGAATAGAATATATCTATTGAAAGTTACATTTTCCATAACCTCAATATTTTGTTTTTGATAAACTAATATTGGTTCAATTATTAATTATGTGACTCATCTTATAAAGATTTTCTAATGCAAATAAAATGTAAGTCCAAACTCAGCTCATATAAAATGTAATTTATAAAAAAATAGGTGGTGACATAGTAACTTTGAAAGAGAATATGATTGTCCTTTAGTTTAATGTGTCTGAATATGGATAATTGATTGATTATTGATTATTTGTTGGTTGACGTAACAGATTGAAGCACCGTGGCCCTGACTGGAGTGGGCTCCACCAACATGGTGACTGCTTTTTGGCACACCAACGGTTAGCCATAGTTGATCCTGCTTCTGGGGATCAACCTCTCTTTAATGAAGACAAATCTGTCATTGTCACGGTAGGCCATTTATATGACATATACTAAATCAATTACAACACATGTATGTAGCATCGACATTTTATATTGAAGGCGTGAGTGTTAACAGTATTGATGCTTGACATATTGATACAACGCTGGCACATGTGATAATATACACAATCATTTTTATGTTATCACTGATGTTTACGTGTCAGTGTCCTTGTCGTATCTGATGTTCATGTCTATGTGTATTTCATAGGACATGGTAGTGTTTCATGCAATTATATTCATATGGTACTATTGCTAATTTTAATATGCAAAACTGGAATATGAATTGTACTTGGACCAGCATGATGTTTCTTTAGCTTATGCTGCTGTTCTCTGTTTTTTGTCCGTAACAATAATGATTATGTTAGTAAATTTTGTCATTATTGAAAAATCAGGTAAATGGAGAGATTTACAACCATGAAGCTCTCAGGAAGCAGCTGTCCAATCACACATTCCGAACTGGAAGTGATTGTGATGTTATTGCACACTTGGTTAGTAATCTTTGATTTAATAATTTGTTCGGTTTGAATTCATGTTGAACATGTGCATATGAACTGTTTGTTATTGATGTTAATCTTGATTAGTATGAGGAATATGGCGAAGACTTTGTGGACAAGTTGGATGGTATCTTTTCCTTTGTTCTATTGGATACTCGTGATAACAGTTACATAGTGGCTAGAGATGCTATTGGAGTAACTTCCCTATACATTGGTTGGGGATTGGATGGTAATGTTATATTATATCTTACCTTATAATTTAATTTATGGATTTTTTGAGTTTGTATTTGAACATGTTTTGGAATGTGTCTGGATTCAGGTTCTGTTTGGATTTCATCAGAAATGAAAGCACTGAATGATGATTGTGAACATTTTGAGTGTTTCCCACCTGGTCATTTGTACTCTAGCAAAGATGGTGGATTTCGAAGATGGTACAATCCTCCTTGGTACTCTGAGGCTATTCCATCAGCTCCTTATGATCCTCTAGCTTTGAGGCATGCCTTTGAGAAGGTATGATTCATAAATGTCTCGGTACATAATTGGGATTCAAAGTTCTCTAAGTGCGTGTTTAGATTTACGGTGCATTGTAACATGATTGATCTTGCGTCTTGTCAGATGTGATTTTAGCGAAAACAATAGTTTTGGTTTATGTCGGTTGATTTTGTCGTCAAATCTCATTTGACTAGAACAGATAAAATGTATTGGTTGAGAGTACTCGAGTTCAGTTTCTGAACGAAACAATTTTTGGTTAAATTTTACATACCTCTTGGCCGAACTTTGGATTTCCAAAGCAACTTATGCCCATTTTGTTTTGATTGGAAACTTCTTCATGATTTCAAATGACACATTGGTTGTGATTACAGGCAGTGATAAAGAGGTTGATGACTGATGTGCCTTTTGGTGTTCTACTATCTGGAGGTTTGGACTCATCATTGGTTGCATCTATCACTTCTCGCTACCTAGCAACCACCAAAGCTGCTGAGCAATGGGGATCAAAACTACACTCATTCTGTGTTGGACTTGAGGTACATATATTTGTTTAAATTTATGAATCACTTTGCTAACTTTCTGTATTTTCTATATTTTTGAAAAAAGACCTTTAATGTCGGTCTTAATATTTGGTATTCTAATTTTGAGTAGGGCTCGCCTGATCTTAAGGCTGGAAAAGAAGTTGCAGACTACCTAGGAACTGTTCACCATGAGTTTACCTTTACTGTTCAGGTAACTGCTTGAAATCAATGTTTCAAAAATCCGACTAGAGATCAAGCCGATGAAACCTCTAGGTCATGGTTCAAATGATTTAATCGGTTGAATTGGATGACTGATAAATAAGTATTCAGAAGAACCGATTGAACCAACCGACAGTCTGGTTCTGAAAACACTGCTTGAAATAGTACTATTTTATCTTACAATTAGGGATATTTCAATTTTTTGATATCAAGATTATGAAATCAATAATATATGGCTTTATGTTATGTAGGATGGTATAGATGCAATTGAGGATGTTATATACCATGTTGAAACTTATGATGTGACCACAATTAGAGCAAGCACACCTATGTTTCTTATGTCAAGGAAGATTAAATCACTTGGTGTCAAATGGGTAATCTCTGGTGAAGGATCTGATGAGATATTTGGTGGATATCTGTACTTTCACAAAGCACCAAACAAGGAAGAGTTTCACCAAGAAACATGCCGCAAGGTCATTAGAATTATGAAGTTCAATGTTAGAACATAATAAAAGAAGTTGAAGTATAGTGATTAATAGATGTATTTTTTTATCATATGCAGATCAAAGCACTTCACCAATATGATTGCCAGAGAGCCAATAAATCAACTTTTGCTTGGGGTCTAGAAGCCAGAGTTCCATTCTTGGACAAGGAGTTTATCAATGTTGCAATGAATATTGATCCCGAGAACAAAATGGTATGAGTAATTAGTGTTACTCTGTTGATTCAATAATTCTACAGGAAATACCGAAAACAAAATAGTTGTTTTTAGTGTTTCTTGTACAAATCTTGGAAAACAGGAAATGTTTCCGCAAAGTAAACGGGCAATAACTAAGCTGGTTTGTTTAAAACGTCCAGATAAAAAAAGATGAAGGACGAATTGAGAAGTATATTCTGAGGAAGGCCTTTGATGATGAAGAGAATCCTTACCTGCCAAAGGTACTAAGTAATTTGCTGCAATGTCTATTGATTTATGCAAAATTGGTTTGCGAAACTAACATTGAAACATTCATTTTCATGCAGCACATTTTATACAGGCAGAAGGAACAATTCAGTGATGGTGTTGGTTATAGTTGGATTGATGGCCTTAAAGCTCATGCTGCAAAACATGTATTGAATCCAACCTTTTAACTCTACAATTTCGTGATGGAGTTTTCTATTGTCACAAAGTTTATGTTACTTATAATTGGTTCTTCACATTTTCCACTAGGTGACTGATAGGATGATGCTTAATGCTGGCAATATCTACCCCCACAACACCCCAAACACCAAGGAAGCATACTACTACAGAATGATCTTTGAGAGGTTCTTCCCTCAGGCAAGTTAATCAATCGACTCTTCTTAATCGGTTCTAACCATATAAGCTTTGTAGCACTGCTACTTCAGGTTAAAGGTGTATATGGTGTTTGACACGTGACGGTGTTGGCCATTGACATATATGATTATATTCAATCACTTCTATTTTCTTAAATTATTACCGGTGTTTACGTGTCAATATCAGGTCGTATTTGGTGTTTGTGTCTGTGTCAGTGCTTCATAAACCATAAGACGACATAATTTAACAAGGGTTGATTTAAATATTGATGTTTTTTTTATTGTTTTGCAGAACTCAGCAAGGCTAACTGTTCCTGGAGGACCAACTGTTGCATGCAGCACAGCAAAAGCTGTTGAGTGGGATGCTTCTTGGTCCAAGAACCTTGATCCTTCAGGTAGAGCAGCACTTGGTGTTCATGATTCAGCTTATGAAAACCAGAAAACCTTGGTCAACAAAACTGTAGAATTTGAGAAGATTATACCATTGGAAGCTTCTCCTGTTGAGGTTGCCATTCAGAGCTAG

Protein sequence

>MS.gene009829.t1

MELSHRGPDWSGLHQHGDCFLAHQRLAIVDPASGDQPLFNEDKSVIVTVNGEIYNHEALRKQLSNHTFRTGSDCDVIAHLYEEYGEDFVDKLDGIFSFVLLDTRDNSYIVARDAIGVTSLYIGWGLDGSVWISSEMKALNDDCEHFECFPPGHLYSSKDGGFRRWYNPPWYSEAIPSAPYDPLALRHAFEKAVIKRLMTDVPFGVLLSGGLDSSLVASITSRYLATTKAAEQWGSKLHSFCVGLEGSPDLKAGKEVADYLGTVHHEFTFTVQDGIDAIEDVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKWVISGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHQYDCQRANKSTFAWGLEARVPFLDKEFINVAMNIDPENKMIKKDEGRIEKYILRKAFDDEENPYLPKHILYRQKEQFSDGVGYSWIDGLKAHAAKHVTDRMMLNAGNIYPHNTPNTKEAYYYRMIFERFFPQNSARLTVPGGPTVACSTAKAVEWDASWSKNLDPSGRAALGVHDSAYENQKTLVNKTVEFEKIIPLEASPVEVAIQS