Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011690.t1 | XP_013457509.1 | 98.1 | 473 | 9 | 0 | 1 | 473 | 1 | 473 | 2.00E-268 | 934.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011690.t1 | Q00257 | 75.5 | 481 | 104 | 4 | 1 | 473 | 1 | 475 | 2.2e-212 | 739.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011690.t1 | A0A072V097 | 98.1 | 473 | 9 | 0 | 1 | 473 | 1 | 473 | 1.4e-268 | 934.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006416 | MS.gene011690 | PPI |
| MS.gene06176 | MS.gene011690 | PPI |
| MS.gene030294 | MS.gene011690 | PPI |
| MS.gene66343 | MS.gene011690 | PPI |
| MS.gene064035 | MS.gene011690 | PPI |
| MS.gene55883 | MS.gene011690 | PPI |
| MS.gene049022 | MS.gene011690 | PPI |
| MS.gene049021 | MS.gene011690 | PPI |
| MS.gene011690 | MS.gene006415 | PPI |
| MS.gene20160 | MS.gene011690 | PPI |
| MS.gene55882 | MS.gene011690 | PPI |
| MS.gene06177 | MS.gene011690 | PPI |
| MS.gene20161 | MS.gene011690 | PPI |
| MS.gene75059 | MS.gene011690 | PPI |
| MS.gene66342 | MS.gene011690 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011690.t1 | MTR_4g097540 | 99.366 | 473 | 3 | 0 | 1 | 473 | 1 | 473 | 0.0 | 983 |
| MS.gene011690.t1 | MTR_5g015020 | 83.402 | 482 | 67 | 5 | 1 | 471 | 1 | 480 | 0.0 | 835 |
| MS.gene011690.t1 | MTR_3g103550 | 69.907 | 432 | 123 | 3 | 3 | 433 | 1 | 426 | 0.0 | 657 |
| MS.gene011690.t1 | MTR_8g098930 | 55.876 | 451 | 187 | 4 | 2 | 450 | 10 | 450 | 0.0 | 553 |
| MS.gene011690.t1 | MTR_6g091760 | 59.861 | 431 | 163 | 4 | 4 | 434 | 14 | 434 | 0.0 | 552 |
| MS.gene011690.t1 | MTR_8g101750 | 57.895 | 437 | 166 | 5 | 4 | 439 | 12 | 431 | 0.0 | 534 |
| MS.gene011690.t1 | MTR_8g028600 | 53.759 | 439 | 189 | 3 | 2 | 438 | 9 | 435 | 0.0 | 520 |
| MS.gene011690.t1 | MTR_7g079080 | 53.103 | 435 | 191 | 3 | 2 | 434 | 9 | 432 | 6.78e-178 | 507 |
| MS.gene011690.t1 | MTR_8g101820 | 53.776 | 437 | 171 | 6 | 4 | 439 | 12 | 418 | 1.83e-169 | 484 |
| MS.gene011690.t1 | MTR_6g463260 | 45.517 | 435 | 225 | 5 | 4 | 437 | 104 | 527 | 2.54e-146 | 429 |
| MS.gene011690.t1 | MTR_7g079080 | 52.959 | 338 | 146 | 3 | 99 | 434 | 1 | 327 | 1.04e-134 | 394 |
| MS.gene011690.t1 | MTR_5g011400 | 41.687 | 415 | 232 | 3 | 16 | 430 | 84 | 488 | 2.14e-125 | 374 |
| MS.gene011690.t1 | MTR_2g090730 | 81.720 | 93 | 13 | 1 | 57 | 149 | 12 | 100 | 4.29e-49 | 167 |
| MS.gene011690.t1 | MTR_5g033230 | 25.410 | 244 | 162 | 9 | 24 | 253 | 35 | 272 | 1.90e-14 | 75.9 |
| MS.gene011690.t1 | MTR_5g033230 | 26.966 | 178 | 122 | 6 | 79 | 253 | 100 | 272 | 2.60e-14 | 75.5 |
| MS.gene011690.t1 | MTR_8g023140 | 22.449 | 343 | 235 | 13 | 112 | 433 | 182 | 514 | 4.08e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011690.t1 | AT4G37770 | 71.698 | 477 | 123 | 4 | 1 | 473 | 1 | 469 | 0.0 | 715 |
| MS.gene011690.t1 | AT3G49700 | 74.153 | 472 | 109 | 4 | 1 | 466 | 1 | 465 | 0.0 | 711 |
| MS.gene011690.t1 | AT5G65800 | 73.517 | 472 | 112 | 5 | 1 | 466 | 1 | 465 | 0.0 | 703 |
| MS.gene011690.t1 | AT2G22810 | 69.023 | 481 | 134 | 3 | 1 | 473 | 1 | 474 | 0.0 | 691 |
| MS.gene011690.t1 | AT4G08040 | 66.234 | 462 | 146 | 3 | 3 | 463 | 1 | 453 | 0.0 | 650 |
| MS.gene011690.t1 | AT4G26200 | 58.333 | 432 | 171 | 3 | 4 | 434 | 18 | 441 | 0.0 | 533 |
| MS.gene011690.t1 | AT3G61510 | 54.147 | 434 | 187 | 3 | 2 | 435 | 9 | 430 | 0.0 | 519 |
| MS.gene011690.t1 | AT1G01480 | 51.592 | 471 | 212 | 5 | 3 | 464 | 11 | 474 | 9.13e-180 | 513 |
| MS.gene011690.t1 | AT4G11280 | 53.118 | 433 | 194 | 2 | 1 | 433 | 12 | 435 | 8.68e-177 | 505 |
| MS.gene011690.t1 | AT1G01480 | 51.733 | 375 | 165 | 5 | 99 | 464 | 1 | 368 | 1.35e-140 | 409 |
| MS.gene011690.t1 | AT5G51690 | 43.590 | 429 | 231 | 4 | 4 | 431 | 69 | 487 | 3.41e-139 | 409 |
| MS.gene011690.t1 | AT1G62960 | 42.227 | 431 | 231 | 8 | 4 | 431 | 132 | 547 | 6.11e-126 | 377 |
| MS.gene011690.t1 | AT5G51690 | 42.932 | 382 | 200 | 4 | 50 | 431 | 1 | 364 | 8.92e-121 | 358 |
| MS.gene011690.t1 | AT1G23310 | 23.868 | 243 | 167 | 8 | 24 | 253 | 35 | 272 | 7.03e-15 | 77.0 |
| MS.gene011690.t1 | AT1G23310 | 23.868 | 243 | 167 | 8 | 24 | 253 | 35 | 272 | 1.28e-14 | 76.3 |
| MS.gene011690.t1 | AT1G70580 | 23.457 | 243 | 168 | 8 | 24 | 253 | 35 | 272 | 3.55e-14 | 75.1 |
| MS.gene011690.t1 | AT1G70580 | 23.457 | 243 | 168 | 8 | 24 | 253 | 35 | 272 | 3.55e-14 | 75.1 |
| MS.gene011690.t1 | AT1G70580 | 23.457 | 243 | 168 | 8 | 24 | 253 | 35 | 272 | 3.55e-14 | 75.1 |
| MS.gene011690.t1 | AT1G70580 | 23.457 | 243 | 168 | 8 | 24 | 253 | 35 | 272 | 3.55e-14 | 75.1 |
| MS.gene011690.t1 | AT2G22250 | 22.222 | 270 | 182 | 7 | 105 | 369 | 106 | 352 | 5.04e-13 | 71.2 |
| MS.gene011690.t1 | AT1G77670 | 24.267 | 375 | 237 | 16 | 71 | 431 | 92 | 433 | 1.06e-12 | 70.1 |
| MS.gene011690.t1 | AT2G24850 | 23.724 | 333 | 211 | 12 | 114 | 433 | 117 | 419 | 1.13e-11 | 67.0 |
| MS.gene011690.t1 | AT2G20610 | 22.778 | 360 | 229 | 13 | 88 | 433 | 111 | 435 | 3.33e-11 | 65.9 |
| MS.gene011690.t1 | AT4G23600 | 23.118 | 372 | 244 | 13 | 87 | 444 | 78 | 421 | 4.17e-11 | 65.1 |
Find 91 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTACTCCTTTGACTTTA+AGG | 0.007055 | 8.3:-22516604 | None:intergenic |
| CGTCAGAACAAGCTTGTTTC+GGG | 0.214801 | 8.3:+22517061 | MS.gene011690:CDS |
| CAAGACTCTTCATACTTCTT+AGG | 0.254225 | 8.3:+22515865 | MS.gene011690:CDS |
| GAGAGCAAGTTCACGGAATA+TGG | 0.287004 | 8.3:-22516152 | None:intergenic |
| TCCATGACGCTGATGAAGTT+TGG | 0.292320 | 8.3:-22516761 | None:intergenic |
| GTTACTTACCCTGGATAATA+AGG | 0.296953 | 8.3:-22516358 | None:intergenic |
| ACCTGGCAAACCCAAGTCTT+TGG | 0.309354 | 8.3:-22516867 | None:intergenic |
| CAACACATTTGAAGCTGAAA+TGG | 0.312708 | 8.3:+22517165 | MS.gene011690:CDS |
| ACGTCAGAACAAGCTTGTTT+CGG | 0.332943 | 8.3:+22517060 | MS.gene011690:CDS |
| ACAAGCATTGGTAGATTTCA+TGG | 0.337094 | 8.3:+22516207 | MS.gene011690:CDS |
| GCTTTCCAAGCAGCTAATTC+CGG | 0.349870 | 8.3:-22517095 | None:intergenic |
| CCCATTTGAATAATTCCTTT+AGG | 0.350296 | 8.3:-22515931 | None:intergenic |
| TTCGGTTACTTGAAAGTTGT+TGG | 0.352316 | 8.3:-22516540 | None:intergenic |
| CTTCCTACTCCTTATTATCC+AGG | 0.362035 | 8.3:+22516349 | MS.gene011690:CDS |
| GAGTCCACTGGCAATGTTAA+TGG | 0.369447 | 8.3:+22517343 | MS.gene011690:CDS |
| ACAAATATTATCAGCGTCAT+TGG | 0.372388 | 8.3:-22516816 | None:intergenic |
| GAGGAATGCTTCTCCTTTCT+CGG | 0.379843 | 8.3:-22516326 | None:intergenic |
| TCCTAAAGGAATTATTCAAA+TGG | 0.384178 | 8.3:+22515930 | MS.gene011690:CDS |
| TCCAAAGACTTGGGTTTGCC+AGG | 0.387995 | 8.3:+22516866 | MS.gene011690:CDS |
| TTGGAGCTTGTGCAATGTAT+TGG | 0.402052 | 8.3:-22516521 | None:intergenic |
| GTGGTGCCTAGCGGGTTTGA+TGG | 0.413274 | 8.3:-22516635 | None:intergenic |
| TTGAAGCTGAAATGGAACTA+TGG | 0.421415 | 8.3:+22517173 | MS.gene011690:CDS |
| CATTTCAGCTTCAAATGTGT+TGG | 0.425676 | 8.3:-22517164 | None:intergenic |
| GATTTCATGGCTGAAATTAG+AGG | 0.438990 | 8.3:+22516220 | MS.gene011690:CDS |
| CTATAGTCTTTCCAAAGACT+TGG | 0.439881 | 8.3:+22516856 | MS.gene011690:CDS |
| AGAGATCTTAAGTGGAGAAC+TGG | 0.441917 | 8.3:+22516485 | MS.gene011690:CDS |
| TGCTTGTTGCAATGCTTGTT+CGG | 0.447826 | 8.3:-22516558 | None:intergenic |
| GCTAAGAATCCAGATGCATC+TGG | 0.449521 | 8.3:+22516109 | MS.gene011690:CDS |
| TTGACATTGTGGTGCCTAGC+GGG | 0.450378 | 8.3:-22516643 | None:intergenic |
| GATTTGATAGAGATCTTAAG+TGG | 0.457172 | 8.3:+22516477 | MS.gene011690:intron |
| AGCTGCTTGGAAAGCAATGC+AGG | 0.457790 | 8.3:+22517103 | MS.gene011690:CDS |
| TACCTTCTTTCCGCCATGCT+TGG | 0.457804 | 8.3:+22516983 | MS.gene011690:CDS |
| GGATTGTGAACATTATCGTA+TGG | 0.469336 | 8.3:-22515910 | None:intergenic |
| ACCAATGCTTGTTTGAATGC+AGG | 0.471558 | 8.3:-22516196 | None:intergenic |
| CAGGCATGCCATGGTAGTCT+TGG | 0.474331 | 8.3:-22516177 | None:intergenic |
| CAGCTTCAAATGTGTTGGAA+TGG | 0.474679 | 8.3:-22517159 | None:intergenic |
| GGTTTGCCAGGTTTCCGTGT+TGG | 0.478336 | 8.3:+22516878 | MS.gene011690:CDS |
| CTTTGAAACTAGCAATGAAA+AGG | 0.480723 | 8.3:+22517302 | MS.gene011690:CDS |
| GCCGAAGCTTGACATCTTCG+TGG | 0.488316 | 8.3:-22516939 | None:intergenic |
| GAGAAATTTACTCACTAAGT+GGG | 0.491942 | 8.3:+22517387 | MS.gene011690:CDS |
| CCTAAAGGAATTATTCAAAT+GGG | 0.495148 | 8.3:+22515931 | MS.gene011690:CDS |
| CTAAGAAGTATGAAGAGTCT+TGG | 0.495354 | 8.3:-22515864 | None:intergenic |
| GCTTTCGTTGTTGAGTCCAC+TGG | 0.495466 | 8.3:+22517331 | MS.gene011690:CDS |
| ACTCTTCATACTTCTTAGGA+TGG | 0.496264 | 8.3:+22515869 | MS.gene011690:CDS |
| AGAGAAATTTACTCACTAAG+TGG | 0.501044 | 8.3:+22517386 | MS.gene011690:CDS |
| CACCAAGCATGGCGGAAAGA+AGG | 0.506326 | 8.3:-22516985 | None:intergenic |
| CCTTAAAGTCAAAGGAGTAA+TGG | 0.507013 | 8.3:+22516604 | MS.gene011690:CDS |
| GATAATGTTCACAATCCTAA+AGG | 0.507661 | 8.3:+22515916 | MS.gene011690:CDS |
| GATTGTGAACATTATCGTAT+GGG | 0.512439 | 8.3:-22515909 | None:intergenic |
| TGGTGCCTAGCGGGTTTGAT+GGG | 0.518811 | 8.3:-22516634 | None:intergenic |
| TAATTCACTCCTTGACATTG+TGG | 0.520906 | 8.3:-22516654 | None:intergenic |
| GCATCTGGATTCAAAAGAGA+TGG | 0.523681 | 8.3:+22516124 | MS.gene011690:CDS |
| GCCTGCATTCAAACAAGCAT+TGG | 0.524558 | 8.3:+22516195 | MS.gene011690:CDS |
| TATAGTCTTTCCAAAGACTT+GGG | 0.530946 | 8.3:+22516857 | MS.gene011690:CDS |
| CTCTTCATACTTCTTAGGAT+GGG | 0.532693 | 8.3:+22515870 | MS.gene011690:CDS |
| TTCCTACTCCTTATTATCCA+GGG | 0.533548 | 8.3:+22516350 | MS.gene011690:CDS |
| TCCAAACTTCATCAGCGTCA+TGG | 0.537282 | 8.3:+22516760 | MS.gene011690:CDS |
| GCCACGAAGATGTCAAGCTT+CGG | 0.543189 | 8.3:+22516938 | MS.gene011690:CDS |
| ATGGCGCCAACACGGAAACC+TGG | 0.544960 | 8.3:-22516884 | None:intergenic |
| CGGAGTAGATGGCGCCAACA+CGG | 0.550123 | 8.3:-22516892 | None:intergenic |
| CTTGGAAGAGAGCAAGTTCA+CGG | 0.552418 | 8.3:-22516159 | None:intergenic |
| TCTTGTCATTGTACAGAACC+AGG | 0.559141 | 8.3:+22517241 | MS.gene011690:CDS |
| AAAAGCCGGAATTAGCTGCT+TGG | 0.561044 | 8.3:+22517090 | MS.gene011690:CDS |
| GCGGTGAGAACTATGTGGTT+GGG | 0.564851 | 8.3:-22516262 | None:intergenic |
| GTGAAATGTTTAAACCAACT+TGG | 0.565975 | 8.3:-22517210 | None:intergenic |
| AAGAAAATAGTGTACCAAGT+TGG | 0.566563 | 8.3:+22517196 | MS.gene011690:CDS |
| AAAGCAACTTGTAATAGTCA+TGG | 0.582182 | 8.3:+22515841 | MS.gene011690:CDS |
| AAACGCAACCTTAAAGTCAA+AGG | 0.585930 | 8.3:+22516596 | MS.gene011690:CDS |
| TGCGGTGAGAACTATGTGGT+TGG | 0.600293 | 8.3:-22516263 | None:intergenic |
| AAACACACACGAAACCAACC+TGG | 0.602737 | 8.3:-22517259 | None:intergenic |
| CATCTACTCCGAAAATGATA+CGG | 0.603585 | 8.3:+22516904 | MS.gene011690:CDS |
| GTTTGAATGCAGGCATGCCA+TGG | 0.605648 | 8.3:-22516186 | None:intergenic |
| GTCATTGTACAGAACCAGGT+TGG | 0.607425 | 8.3:+22517245 | MS.gene011690:CDS |
| AACCACATAGTTCTCACCGC+AGG | 0.611056 | 8.3:+22516265 | MS.gene011690:CDS |
| CTGGATAATAAGGAGTAGGA+AGG | 0.613137 | 8.3:-22516348 | None:intergenic |
| GATAATAAGGAGTAGGAAGG+AGG | 0.616132 | 8.3:-22516345 | None:intergenic |
| ATAAGCGACGAGATTTACTC+CGG | 0.625337 | 8.3:+22516722 | MS.gene011690:CDS |
| TGATCAACGTGATCAACAAG+AGG | 0.629251 | 8.3:+22517429 | MS.gene011690:CDS |
| GTTGGTTTAAACATTTCACC+TGG | 0.630672 | 8.3:+22517214 | MS.gene011690:CDS |
| AACGTGATCAACAAGAGGAA+CGG | 0.630998 | 8.3:+22517434 | MS.gene011690:CDS |
| TACCCTGGATAATAAGGAGT+AGG | 0.632955 | 8.3:-22516352 | None:intergenic |
| CGCTAGGCACCACAATGTCA+AGG | 0.634181 | 8.3:+22516645 | MS.gene011690:CDS |
| AACACCATTAACATTGCCAG+TGG | 0.635347 | 8.3:-22517347 | None:intergenic |
| CTTGACATTGTGGTGCCTAG+CGG | 0.638500 | 8.3:-22516644 | None:intergenic |
| GACGCTGATGAAGTTTGGAG+AGG | 0.643971 | 8.3:-22516756 | None:intergenic |
| ACAAACCCATCAAACCCGCT+AGG | 0.648673 | 8.3:+22516629 | MS.gene011690:CDS |
| GCTCTCTTCCAAGACTACCA+TGG | 0.688190 | 8.3:+22516169 | MS.gene011690:CDS |
| ATTTGCTGAAGTAGAACCTG+CGG | 0.695572 | 8.3:-22516281 | None:intergenic |
| GTACAATGACAAGATGAACC+AGG | 0.699733 | 8.3:-22517232 | None:intergenic |
| ATTGCAACAAGCATACCAAG+AGG | 0.713636 | 8.3:+22516568 | MS.gene011690:CDS |
| AACCTGCGGTGAGAACTATG+TGG | 0.788440 | 8.3:-22516267 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGTACAAATAAATTTTTA+AGG | - | chr8.3:22516030-22516049 | None:intergenic | 10.0% |
| !! | TGCAAAAGAAAAAAAAATAT+TGG | - | chr8.3:22516058-22516077 | None:intergenic | 15.0% |
| ! | CCTAAAGGAATTATTCAAAT+GGG | + | chr8.3:22515931-22515950 | MS.gene011690:CDS | 25.0% |
| ! | TCCTAAAGGAATTATTCAAA+TGG | + | chr8.3:22515930-22515949 | MS.gene011690:CDS | 25.0% |
| AAAGCAACTTGTAATAGTCA+TGG | + | chr8.3:22515841-22515860 | MS.gene011690:CDS | 30.0% | |
| AAGAAAATAGTGTACCAAGT+TGG | + | chr8.3:22517196-22517215 | MS.gene011690:CDS | 30.0% | |
| ACAAATATTATCAGCGTCAT+TGG | - | chr8.3:22516819-22516838 | None:intergenic | 30.0% | |
| AGAGAAATTTACTCACTAAG+TGG | + | chr8.3:22517386-22517405 | MS.gene011690:CDS | 30.0% | |
| CCCATTTGAATAATTCCTTT+AGG | - | chr8.3:22515934-22515953 | None:intergenic | 30.0% | |
| GAGAAATTTACTCACTAAGT+GGG | + | chr8.3:22517387-22517406 | MS.gene011690:CDS | 30.0% | |
| GATAATGTTCACAATCCTAA+AGG | + | chr8.3:22515916-22515935 | MS.gene011690:CDS | 30.0% | |
| GATTGTGAACATTATCGTAT+GGG | - | chr8.3:22515912-22515931 | None:intergenic | 30.0% | |
| GATTTGATAGAGATCTTAAG+TGG | + | chr8.3:22516477-22516496 | MS.gene011690:intron | 30.0% | |
| GTGAAATGTTTAAACCAACT+TGG | - | chr8.3:22517213-22517232 | None:intergenic | 30.0% | |
| TATAGTCTTTCCAAAGACTT+GGG | + | chr8.3:22516857-22516876 | MS.gene011690:CDS | 30.0% | |
| ! | AAAAACAATGTTACTTACCC+TGG | - | chr8.3:22516370-22516389 | None:intergenic | 30.0% |
| ! | GTTTTCAGCTAAGTAGTTTT+TGG | - | chr8.3:22517023-22517042 | None:intergenic | 30.0% |
| !! | CAATGCAGGATTATTTTGTT+GGG | + | chr8.3:22517117-22517136 | MS.gene011690:CDS | 30.0% |
| !! | CTTTGAAACTAGCAATGAAA+AGG | + | chr8.3:22517302-22517321 | MS.gene011690:CDS | 30.0% |
| !!! | TATTTTGTTGGGTTGATATG+AGG | + | chr8.3:22517128-22517147 | MS.gene011690:CDS | 30.0% |
| AAACGCAACCTTAAAGTCAA+AGG | + | chr8.3:22516596-22516615 | MS.gene011690:CDS | 35.0% | |
| ACTCTTCATACTTCTTAGGA+TGG | + | chr8.3:22515869-22515888 | MS.gene011690:CDS | 35.0% | |
| CAAGACTCTTCATACTTCTT+AGG | + | chr8.3:22515865-22515884 | MS.gene011690:CDS | 35.0% | |
| CATCTACTCCGAAAATGATA+CGG | + | chr8.3:22516904-22516923 | MS.gene011690:CDS | 35.0% | |
| CATTTCAGCTTCAAATGTGT+TGG | - | chr8.3:22517167-22517186 | None:intergenic | 35.0% | |
| CCTTAAAGTCAAAGGAGTAA+TGG | + | chr8.3:22516604-22516623 | MS.gene011690:CDS | 35.0% | |
| CTATAGTCTTTCCAAAGACT+TGG | + | chr8.3:22516856-22516875 | MS.gene011690:CDS | 35.0% | |
| CTCTTCATACTTCTTAGGAT+GGG | + | chr8.3:22515870-22515889 | MS.gene011690:CDS | 35.0% | |
| GATTTCATGGCTGAAATTAG+AGG | + | chr8.3:22516220-22516239 | MS.gene011690:CDS | 35.0% | |
| GGATTGTGAACATTATCGTA+TGG | - | chr8.3:22515913-22515932 | None:intergenic | 35.0% | |
| GTTACTTACCCTGGATAATA+AGG | - | chr8.3:22516361-22516380 | None:intergenic | 35.0% | |
| TAATTCACTCCTTGACATTG+TGG | - | chr8.3:22516657-22516676 | None:intergenic | 35.0% | |
| TTCCTACTCCTTATTATCCA+GGG | + | chr8.3:22516350-22516369 | MS.gene011690:CDS | 35.0% | |
| TTCGGTTACTTGAAAGTTGT+TGG | - | chr8.3:22516543-22516562 | None:intergenic | 35.0% | |
| TTGAAGCTGAAATGGAACTA+TGG | + | chr8.3:22517173-22517192 | MS.gene011690:CDS | 35.0% | |
| ! | AGCAACAACCGTATCATTTT+CGG | - | chr8.3:22516915-22516934 | None:intergenic | 35.0% |
| ! | CAACACATTTGAAGCTGAAA+TGG | + | chr8.3:22517165-22517184 | MS.gene011690:CDS | 35.0% |
| ! | CCATTACTCCTTTGACTTTA+AGG | - | chr8.3:22516607-22516626 | None:intergenic | 35.0% |
| ! | CTAAGAAGTATGAAGAGTCT+TGG | - | chr8.3:22515867-22515886 | None:intergenic | 35.0% |
| ! | CTTTTGATCTCTTGGAATCA+TGG | + | chr8.3:22516083-22516102 | MS.gene011690:CDS | 35.0% |
| ! | GTTGGTTTAAACATTTCACC+TGG | + | chr8.3:22517214-22517233 | MS.gene011690:CDS | 35.0% |
| !! | ACAAGCATTGGTAGATTTCA+TGG | + | chr8.3:22516207-22516226 | MS.gene011690:CDS | 35.0% |
| !! | GCAATGCAGGATTATTTTGT+TGG | + | chr8.3:22517116-22517135 | MS.gene011690:CDS | 35.0% |
| !! | TACTCACTAAGTGGGTTTTT+CGG | + | chr8.3:22517395-22517414 | MS.gene011690:CDS | 35.0% |
| !!! | GAATTTTTTGTCACCAAGCA+TGG | - | chr8.3:22516999-22517018 | None:intergenic | 35.0% |
| AACACCATTAACATTGCCAG+TGG | - | chr8.3:22517350-22517369 | None:intergenic | 40.0% | |
| AACGTGATCAACAAGAGGAA+CGG | + | chr8.3:22517434-22517453 | MS.gene011690:CDS | 40.0% | |
| ACCAATGCTTGTTTGAATGC+AGG | - | chr8.3:22516199-22516218 | None:intergenic | 40.0% | |
| AGAGATCTTAAGTGGAGAAC+TGG | + | chr8.3:22516485-22516504 | MS.gene011690:CDS | 40.0% | |
| ATAAGCGACGAGATTTACTC+CGG | + | chr8.3:22516722-22516741 | MS.gene011690:CDS | 40.0% | |
| ATTGCAACAAGCATACCAAG+AGG | + | chr8.3:22516568-22516587 | MS.gene011690:CDS | 40.0% | |
| CAGCTTCAAATGTGTTGGAA+TGG | - | chr8.3:22517162-22517181 | None:intergenic | 40.0% | |
| CTGGATAATAAGGAGTAGGA+AGG | - | chr8.3:22516351-22516370 | None:intergenic | 40.0% | |
| CTTCCTACTCCTTATTATCC+AGG | + | chr8.3:22516349-22516368 | MS.gene011690:CDS | 40.0% | |
| GATAATAAGGAGTAGGAAGG+AGG | - | chr8.3:22516348-22516367 | None:intergenic | 40.0% | |
| GCATCTGGATTCAAAAGAGA+TGG | + | chr8.3:22516124-22516143 | MS.gene011690:CDS | 40.0% | |
| GTACAATGACAAGATGAACC+AGG | - | chr8.3:22517235-22517254 | None:intergenic | 40.0% | |
| TACCCTGGATAATAAGGAGT+AGG | - | chr8.3:22516355-22516374 | None:intergenic | 40.0% | |
| TCTTGTCATTGTACAGAACC+AGG | + | chr8.3:22517241-22517260 | MS.gene011690:CDS | 40.0% | |
| TGATCAACGTGATCAACAAG+AGG | + | chr8.3:22517429-22517448 | MS.gene011690:CDS | 40.0% | |
| TTGGAGCTTGTGCAATGTAT+TGG | - | chr8.3:22516524-22516543 | None:intergenic | 40.0% | |
| ! | ACGTCAGAACAAGCTTGTTT+CGG | + | chr8.3:22517060-22517079 | MS.gene011690:CDS | 40.0% |
| ! | ATGTTTTGTCTTGCCGAGAA+AGG | + | chr8.3:22516313-22516332 | MS.gene011690:CDS | 40.0% |
| ! | ATTTGCTGAAGTAGAACCTG+CGG | - | chr8.3:22516284-22516303 | None:intergenic | 40.0% |
| ! | CGTATCATTTTCGGAGTAGA+TGG | - | chr8.3:22516906-22516925 | None:intergenic | 40.0% |
| ! | CTTTTGAATCCAGATGCATC+TGG | - | chr8.3:22516121-22516140 | None:intergenic | 40.0% |
| ! | TGCTTGTTGCAATGCTTGTT+CGG | - | chr8.3:22516561-22516580 | None:intergenic | 40.0% |
| !! | GTTTCGGGTTTACAAAAAGC+CGG | + | chr8.3:22517076-22517095 | MS.gene011690:CDS | 40.0% |
| !!! | TTTTTTGTCACCAAGCATGG+CGG | - | chr8.3:22516996-22517015 | None:intergenic | 40.0% |
| AAAAGCCGGAATTAGCTGCT+TGG | + | chr8.3:22517090-22517109 | MS.gene011690:CDS | 45.0% | |
| AAACACACACGAAACCAACC+TGG | - | chr8.3:22517262-22517281 | None:intergenic | 45.0% | |
| CTTGGAAGAGAGCAAGTTCA+CGG | - | chr8.3:22516162-22516181 | None:intergenic | 45.0% | |
| GAGAGCAAGTTCACGGAATA+TGG | - | chr8.3:22516155-22516174 | None:intergenic | 45.0% | |
| GAGGAATGCTTCTCCTTTCT+CGG | - | chr8.3:22516329-22516348 | None:intergenic | 45.0% | |
| GAGTCCACTGGCAATGTTAA+TGG | + | chr8.3:22517343-22517362 | MS.gene011690:CDS | 45.0% | |
| GCCTGCATTCAAACAAGCAT+TGG | + | chr8.3:22516195-22516214 | MS.gene011690:CDS | 45.0% | |
| GCTAAGAATCCAGATGCATC+TGG | + | chr8.3:22516109-22516128 | MS.gene011690:CDS | 45.0% | |
| GCTTTCCAAGCAGCTAATTC+CGG | - | chr8.3:22517098-22517117 | None:intergenic | 45.0% | |
| GTCATTGTACAGAACCAGGT+TGG | + | chr8.3:22517245-22517264 | MS.gene011690:CDS | 45.0% | |
| TCCAAACTTCATCAGCGTCA+TGG | + | chr8.3:22516760-22516779 | MS.gene011690:CDS | 45.0% | |
| TCCATGACGCTGATGAAGTT+TGG | - | chr8.3:22516764-22516783 | None:intergenic | 45.0% | |
| TGGAGAGGAAAAAACAGTGC+CGG | - | chr8.3:22516744-22516763 | None:intergenic | 45.0% | |
| ! | CGTCAGAACAAGCTTGTTTC+GGG | + | chr8.3:22517061-22517080 | MS.gene011690:CDS | 45.0% |
| ! | GCAGCTCTCTTTTGATCTCT+TGG | + | chr8.3:22516075-22516094 | MS.gene011690:intron | 45.0% |
| AACCACATAGTTCTCACCGC+AGG | + | chr8.3:22516265-22516284 | MS.gene011690:CDS | 50.0% | |
| AACCTGCGGTGAGAACTATG+TGG | - | chr8.3:22516270-22516289 | None:intergenic | 50.0% | |
| ACAAACCCATCAAACCCGCT+AGG | + | chr8.3:22516629-22516648 | MS.gene011690:CDS | 50.0% | |
| ACCTGGCAAACCCAAGTCTT+TGG | - | chr8.3:22516870-22516889 | None:intergenic | 50.0% | |
| AGCTGCTTGGAAAGCAATGC+AGG | + | chr8.3:22517103-22517122 | MS.gene011690:CDS | 50.0% | |
| CTTGACATTGTGGTGCCTAG+CGG | - | chr8.3:22516647-22516666 | None:intergenic | 50.0% | |
| GACGCTGATGAAGTTTGGAG+AGG | - | chr8.3:22516759-22516778 | None:intergenic | 50.0% | |
| GCCACGAAGATGTCAAGCTT+CGG | + | chr8.3:22516938-22516957 | MS.gene011690:CDS | 50.0% | |
| GCGGTGAGAACTATGTGGTT+GGG | - | chr8.3:22516265-22516284 | None:intergenic | 50.0% | |
| GCTCTCTTCCAAGACTACCA+TGG | + | chr8.3:22516169-22516188 | MS.gene011690:CDS | 50.0% | |
| GCTTTCGTTGTTGAGTCCAC+TGG | + | chr8.3:22517331-22517350 | MS.gene011690:CDS | 50.0% | |
| GTTTGAATGCAGGCATGCCA+TGG | - | chr8.3:22516189-22516208 | None:intergenic | 50.0% | |
| TACCTTCTTTCCGCCATGCT+TGG | + | chr8.3:22516983-22517002 | MS.gene011690:CDS | 50.0% | |
| TCCAAAGACTTGGGTTTGCC+AGG | + | chr8.3:22516866-22516885 | MS.gene011690:CDS | 50.0% | |
| TGCGGTGAGAACTATGTGGT+TGG | - | chr8.3:22516266-22516285 | None:intergenic | 50.0% | |
| TTGACATTGTGGTGCCTAGC+GGG | - | chr8.3:22516646-22516665 | None:intergenic | 50.0% | |
| ! | GGTTGCGTTTTTGTGCCTCT+TGG | - | chr8.3:22516586-22516605 | None:intergenic | 50.0% |
| CAGGCATGCCATGGTAGTCT+TGG | - | chr8.3:22516180-22516199 | None:intergenic | 55.0% | |
| CGCTAGGCACCACAATGTCA+AGG | + | chr8.3:22516645-22516664 | MS.gene011690:CDS | 55.0% | |
| GCCGAAGCTTGACATCTTCG+TGG | - | chr8.3:22516942-22516961 | None:intergenic | 55.0% | |
| GGTTTGCCAGGTTTCCGTGT+TGG | + | chr8.3:22516878-22516897 | MS.gene011690:CDS | 55.0% | |
| ! | CACCAAGCATGGCGGAAAGA+AGG | - | chr8.3:22516988-22517007 | None:intergenic | 55.0% |
| !! | TGGTGCCTAGCGGGTTTGAT+GGG | - | chr8.3:22516637-22516656 | None:intergenic | 55.0% |
| ATGGCGCCAACACGGAAACC+TGG | - | chr8.3:22516887-22516906 | None:intergenic | 60.0% | |
| CGGAGTAGATGGCGCCAACA+CGG | - | chr8.3:22516895-22516914 | None:intergenic | 60.0% | |
| !! | GTGGTGCCTAGCGGGTTTGA+TGG | - | chr8.3:22516638-22516657 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 22515823 | 22517459 | 22515823 | ID=MS.gene011690 |
| chr8.3 | mRNA | 22515823 | 22517459 | 22515823 | ID=MS.gene011690.t1;Parent=MS.gene011690 |
| chr8.3 | exon | 22515823 | 22515969 | 22515823 | ID=MS.gene011690.t1.exon1;Parent=MS.gene011690.t1 |
| chr8.3 | CDS | 22515823 | 22515969 | 22515823 | ID=cds.MS.gene011690.t1;Parent=MS.gene011690.t1 |
| chr8.3 | exon | 22516079 | 22516371 | 22516079 | ID=MS.gene011690.t1.exon2;Parent=MS.gene011690.t1 |
| chr8.3 | CDS | 22516079 | 22516371 | 22516079 | ID=cds.MS.gene011690.t1;Parent=MS.gene011690.t1 |
| chr8.3 | exon | 22516478 | 22517459 | 22516478 | ID=MS.gene011690.t1.exon3;Parent=MS.gene011690.t1 |
| chr8.3 | CDS | 22516478 | 22517459 | 22516478 | ID=cds.MS.gene011690.t1;Parent=MS.gene011690.t1 |
| Gene Sequence |
| Protein sequence |
