AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55882

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55882.t1 MTR_8g101750 95.402 435 20 0 1 435 1 435 0.0 875
MS.gene55882.t1 MTR_8g101820 89.425 435 33 2 1 435 1 422 0.0 810
MS.gene55882.t1 MTR_6g091760 81.007 437 75 2 1 429 1 437 0.0 755
MS.gene55882.t1 MTR_5g015020 59.122 433 160 6 12 428 4 435 0.0 541
MS.gene55882.t1 MTR_4g097540 57.895 437 166 5 12 431 4 439 0.0 538
MS.gene55882.t1 MTR_3g103550 56.977 430 174 3 12 430 2 431 0.0 530
MS.gene55882.t1 MTR_8g098930 56.941 425 174 2 12 427 12 436 0.0 525
MS.gene55882.t1 MTR_8g028600 55.711 429 182 2 12 433 11 438 0.0 522
MS.gene55882.t1 MTR_7g079080 55.916 431 183 1 12 435 11 441 0.0 521
MS.gene55882.t1 MTR_6g463260 44.731 427 227 2 10 428 102 527 4.44e-145 424
MS.gene55882.t1 MTR_7g079080 55.988 334 147 0 100 433 1 334 8.64e-142 410
MS.gene55882.t1 MTR_5g011400 43.980 407 218 3 24 422 84 488 4.20e-131 387
MS.gene55882.t1 MTR_2g090730 56.757 74 28 1 77 150 31 100 3.02e-21 91.7
MS.gene55882.t1 MTR_5g033230 24.595 309 212 12 83 373 103 408 1.01e-16 82.4
MS.gene55882.t1 MTR_8g091280 23.174 397 262 15 46 426 97 466 1.32e-16 82.0
MS.gene55882.t1 MTR_5g033230 24.595 309 212 12 83 373 103 408 1.37e-16 82.0
MS.gene55882.t1 MTR_8g023140 22.642 371 259 14 78 425 149 514 1.00e-14 76.6
MS.gene55882.t1 MTR_2g090615 26.087 276 167 9 88 350 86 337 2.60e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55882.t1 AT4G26200 75.524 429 96 3 10 429 16 444 0.0 664
MS.gene55882.t1 AT4G37770 59.353 433 166 2 12 434 4 436 0.0 554
MS.gene55882.t1 AT4G08040 57.907 430 174 1 12 434 2 431 0.0 547
MS.gene55882.t1 AT5G65800 58.178 428 169 3 11 428 3 430 0.0 533
MS.gene55882.t1 AT3G49700 58.275 429 167 3 11 428 3 430 0.0 529
MS.gene55882.t1 AT2G22810 56.193 436 180 3 10 434 2 437 0.0 527
MS.gene55882.t1 AT3G61510 56.398 422 174 2 12 426 11 429 0.0 525
MS.gene55882.t1 AT4G11280 56.148 431 182 1 4 427 7 437 0.0 520
MS.gene55882.t1 AT1G01480 51.945 437 200 3 1 427 1 437 1.33e-172 493
MS.gene55882.t1 AT5G51690 44.028 427 230 3 10 428 67 492 6.32e-139 407
MS.gene55882.t1 AT1G01480 52.870 331 153 2 100 427 1 331 2.38e-134 392
MS.gene55882.t1 AT1G62960 43.457 405 226 3 22 423 143 547 5.65e-128 381
MS.gene55882.t1 AT5G51690 46.839 348 184 1 81 428 23 369 2.58e-124 365
MS.gene55882.t1 AT1G23310 25.632 277 188 9 83 344 103 376 3.56e-18 86.7
MS.gene55882.t1 AT1G23310 25.632 277 188 9 83 344 103 376 4.58e-18 86.7
MS.gene55882.t1 AT4G23600 25.627 359 230 13 88 433 78 412 8.17e-18 85.5
MS.gene55882.t1 AT1G72330 22.955 379 264 14 73 428 160 533 1.03e-17 85.9
MS.gene55882.t1 AT5G36160 24.022 358 231 13 83 425 80 411 1.67e-17 84.7
MS.gene55882.t1 AT1G70580 25.271 277 189 10 83 344 103 376 2.48e-17 84.3
MS.gene55882.t1 AT1G70580 25.271 277 189 10 83 344 103 376 2.48e-17 84.3
MS.gene55882.t1 AT1G70580 25.271 277 189 10 83 344 103 376 2.48e-17 84.3
MS.gene55882.t1 AT1G70580 25.271 277 189 10 83 344 103 376 2.48e-17 84.3
MS.gene55882.t1 AT1G72330 23.970 267 189 8 73 328 160 423 6.20e-17 82.8
MS.gene55882.t1 AT1G72330 22.194 392 264 14 73 428 160 546 6.48e-16 80.5
MS.gene55882.t1 AT1G80360 23.737 396 249 15 41 424 28 382 7.67e-16 79.3
MS.gene55882.t1 AT1G80360 23.737 396 249 15 41 424 28 382 7.67e-16 79.3
MS.gene55882.t1 AT1G80360 23.737 396 249 15 41 424 28 382 7.67e-16 79.3
MS.gene55882.t1 AT1G80360 23.737 396 249 15 41 424 28 382 7.67e-16 79.3
MS.gene55882.t1 AT2G20610 24.507 355 223 14 88 425 109 435 3.19e-15 77.8
MS.gene55882.t1 AT1G17290 22.483 298 211 11 78 359 168 461 3.74e-15 77.8
MS.gene55882.t1 AT4G23600 25.455 330 211 12 117 433 1 308 1.26e-14 75.1
MS.gene55882.t1 AT1G77670 24.340 341 233 11 87 424 116 434 1.27e-14 75.9
MS.gene55882.t1 AT4G23600 25.472 318 203 11 88 392 78 374 2.86e-14 74.3
MS.gene55882.t1 AT2G20610 25.461 271 167 9 88 345 109 357 3.28e-14 74.7
MS.gene55882.t1 AT4G28410 26.619 278 163 11 88 350 111 362 9.17e-12 67.0
MS.gene55882.t1 AT4G28410 26.642 274 168 10 88 350 111 362 1.20e-11 66.6
MS.gene55882.t1 AT4G23590 23.851 348 234 12 88 425 78 404 2.08e-11 65.9
MS.gene55882.t1 AT5G53970 23.416 363 233 14 88 433 76 410 3.74e-11 65.1

Find 89 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATATATTAAGATTAAT+AGG 0.166710 4.3:+3527205 MS.gene55882:CDS
GCGGTGATGACTATTCTTTC+TGG 0.188225 4.3:-3526255 None:intergenic
GTGATCAACCTGGTTGGTTT+AGG 0.197998 4.3:+3527433 MS.gene55882:CDS
TGTAAGCATAGCAGAGATTC+TGG 0.267334 4.3:+3526975 MS.gene55882:CDS
TGATCAACCTGGTTGGTTTA+GGG 0.271865 4.3:+3527434 MS.gene55882:CDS
AACTTCATGGCTAGCCGAAC+AGG 0.317741 4.3:+3527513 MS.gene55882:CDS
ACAAACCCTTCAAACCCTTT+AGG 0.351926 4.3:+3526838 MS.gene55882:CDS
GTCAACTAAGGAAGGTGAAT+TGG 0.354677 4.3:+3527347 MS.gene55882:CDS
GATGAATTAACTAACTCTTC+AGG 0.373544 4.3:+3525921 MS.gene55882:CDS
TGTGCAGGTTTCATTTGATT+TGG 0.377676 4.3:+3526086 MS.gene55882:intron
GAAAACTCACCCTACTTTGC+TGG 0.379915 4.3:+3525870 MS.gene55882:CDS
GAGTTAGTTAATTCATCATA+AGG 0.381161 4.3:-3525915 None:intergenic
GATTCTTACCCTGGATAGTA+AGG 0.392460 4.3:-3526351 None:intergenic
TATAGTCTCTCTAAAGATCT+TGG 0.393148 4.3:+3527039 MS.gene55882:CDS
CTCATTAGCCGCAGTTGCTC+CGG 0.395906 4.3:-3526277 None:intergenic
ACATCTTCTTTGTCCCTGTT+CGG 0.397573 4.3:-3527527 None:intergenic
AGGAACAAGCAAGGCATCGC+CGG 0.403862 4.3:-3526325 None:intergenic
CTGAAACCATTATAATCCTC+AGG 0.404711 4.3:-3526132 None:intergenic
AAGTGCAATGGCAAGTTTCA+TGG 0.405411 4.3:+3526200 MS.gene55882:CDS
GAGCACCCTGAGGATTATAA+TGG 0.406179 4.3:+3526126 MS.gene55882:CDS
GTTCCTACCCCTTACTATCC+AGG 0.407257 4.3:+3526342 MS.gene55882:CDS
GGAAAGAATACGTAACTTCA+TGG 0.412992 4.3:+3527500 MS.gene55882:CDS
TTTGACCTGTTGCAGTGAAT+TGG 0.417511 4.3:-3526730 None:intergenic
GAAATATATTAAGATTAATA+GGG 0.423478 4.3:+3527206 MS.gene55882:CDS
CGTTGAACTGTTATACCTAA+AGG 0.428028 4.3:-3526853 None:intergenic
GTTGAACTGTTATACCTAAA+GGG 0.430255 4.3:-3526852 None:intergenic
GTTATACCTAAAGGGTTTGA+AGG 0.431593 4.3:-3526844 None:intergenic
AATTTATTCATACAATGATA+AGG 0.432216 4.3:+3527086 MS.gene55882:CDS
AGATATGAAATGATTATTGA+AGG 0.438836 4.3:+3527243 MS.gene55882:CDS
TAGTGCCAATTCACTGCAAC+AGG 0.441325 4.3:+3526725 MS.gene55882:CDS
CTGAAATTGAATATATCTCC+AGG 0.445529 4.3:+3527396 MS.gene55882:CDS
GTAGGTTTGATAGAGACTTA+AGG 0.446910 4.3:+3526683 MS.gene55882:intron
GGAACAAGCAAGGCATCGCC+GGG 0.449445 4.3:-3526324 None:intergenic
GCATTATTTCAAGACTATCA+TGG 0.449699 4.3:+3526162 MS.gene55882:CDS
ATTGAAGGCTTGAAAAGTGT+TGG 0.452654 4.3:+3527258 MS.gene55882:CDS
TTAGTTGACTCCTTCAAAAG+TGG 0.458012 4.3:-3527333 None:intergenic
GAGTGTTTGAAAGGGAATGC+AGG 0.465675 4.3:+3527285 MS.gene55882:CDS
AGTTAGTTAATTCATCATAA+GGG 0.468946 4.3:-3525914 None:intergenic
AGGAAGGTGAATTGGAACTT+TGG 0.476087 4.3:+3527355 MS.gene55882:CDS
ACAAACTTTGGATGTTGCAT+TGG 0.480931 4.3:+3527479 MS.gene55882:CDS
GGTCTACCAGGTTTCAGAGT+TGG 0.483669 4.3:+3527060 MS.gene55882:CDS
AAATATGAGTGAACAAACTT+TGG 0.486245 4.3:+3527467 MS.gene55882:CDS
CTCTTCAGGAGTTATACAAA+TGG 0.488431 4.3:+3525935 MS.gene55882:CDS
AGAGACTTAAGGTGGAGAAC+TGG 0.493331 4.3:+3526694 MS.gene55882:CDS
CATCTCAGACGAAATCTACT+CGG 0.501179 4.3:+3526927 MS.gene55882:CDS
GGCTTTCCATCCAGCAAAGT+AGG 0.501359 4.3:-3525880 None:intergenic
TCTAAAGATCTTGGTCTACC+AGG 0.510586 4.3:+3527048 MS.gene55882:CDS
ACAGGGACAAAGAAGATGTA+AGG 0.520984 4.3:+3527531 MS.gene55882:CDS
GCCGGGGTTTGCAAGAATGA+AGG 0.526652 4.3:-3526307 None:intergenic
ACCTTCATTCTTGCAAACCC+CGG 0.529279 4.3:+3526306 MS.gene55882:CDS
ATTGCAATTTCTGACACTCA+TGG 0.531513 4.3:+3525846 MS.gene55882:CDS
TCTTCAGGAGTTATACAAAT+GGG 0.535454 4.3:+3525936 MS.gene55882:CDS
GTCATTGTGATCAACCTGGT+TGG 0.538197 4.3:+3527427 MS.gene55882:CDS
TTCCTACCCCTTACTATCCA+GGG 0.542899 4.3:+3526343 MS.gene55882:CDS
TTATACCTAAAGGGTTTGAA+GGG 0.548536 4.3:-3526843 None:intergenic
ATTCTTACCCTGGATAGTAA+GGG 0.548613 4.3:-3526350 None:intergenic
TAAGCTGCTTCTAAAGCTTG+AGG 0.550801 4.3:-3526769 None:intergenic
AGACGAAATCTACTCGGGCT+CGG 0.552466 4.3:+3526933 MS.gene55882:CDS
TTGTGTTTGTGAAGATATCA+AGG 0.553420 4.3:-3527142 None:intergenic
GGTTTGATAGAGACTTAAGG+TGG 0.553899 4.3:+3526686 MS.gene55882:intron
TTGAAGGAGTCAACTAAGGA+AGG 0.555608 4.3:+3527339 MS.gene55882:CDS
AGATTTCGTCTGAGATGAGG+TGG 0.558059 4.3:-3526921 None:intergenic
GTTGGAATTGAGTGTTTGAA+AGG 0.569169 4.3:+3527276 MS.gene55882:CDS
ACTCACCCTACTTTGCTGGA+TGG 0.572647 4.3:+3525874 MS.gene55882:CDS
GGCTAATATGCTATCAGACA+AGG 0.573142 4.3:+3527173 MS.gene55882:CDS
TTGGAATTGAGTGTTTGAAA+GGG 0.574213 4.3:+3527277 MS.gene55882:CDS
AGTTTCATGGAACAAATAAG+AGG 0.575774 4.3:+3526213 MS.gene55882:CDS
GCTTTCCATCCAGCAAAGTA+GGG 0.580141 4.3:-3525879 None:intergenic
AGGAGTTATACAAATGGGAC+TGG 0.580638 4.3:+3525941 MS.gene55882:CDS
TAAATCATTCAGAAGTGCAA+TGG 0.583118 4.3:+3526188 MS.gene55882:CDS
TCTTGTCATTGTGATCAACC+TGG 0.587957 4.3:+3527423 MS.gene55882:CDS
ATTAGCCGCAGTTGCTCCGG+CGG 0.589538 4.3:-3526274 None:intergenic
CATCACCGCCGGAGCAACTG+CGG 0.595084 4.3:+3526269 MS.gene55882:CDS
ATCTCAGACGAAATCTACTC+GGG 0.596514 4.3:+3526928 MS.gene55882:CDS
TTCTTACCCTGGATAGTAAG+GGG 0.604583 4.3:-3526349 None:intergenic
TCAATGAACATGAAAGTGAG+TGG 0.607414 4.3:+3526805 MS.gene55882:CDS
ATTGTTCCAACTCTGAAACC+TGG 0.608322 4.3:-3527066 None:intergenic
TGAAACCATTATAATCCTCA+GGG 0.627551 4.3:-3526131 None:intergenic
ACTTCATGGCTAGCCGAACA+GGG 0.629105 4.3:+3527514 MS.gene55882:CDS
GAAAGAATAGTCATCACCGC+CGG 0.631099 4.3:+3526258 MS.gene55882:CDS
AGTAGATTTCGTCTGAGATG+AGG 0.631875 4.3:-3526924 None:intergenic
TACCCTGGATAGTAAGGGGT+AGG 0.633960 4.3:-3526345 None:intergenic
TGAAATTGAATATATCTCCA+GGG 0.640695 4.3:+3527397 MS.gene55882:CDS
TTCATGGAACAAATAAGAGG+TGG 0.647531 4.3:+3526216 MS.gene55882:CDS
GTAAGGGGTAGGAACAAGCA+AGG 0.672268 4.3:-3526334 None:intergenic
AAACAGACCCTAAACCAACC+AGG 0.685588 4.3:-3527441 None:intergenic
TCACAATGACAAGAACACCC+TGG 0.704106 4.3:-3527414 None:intergenic
GAACAAGCAAGGCATCGCCG+GGG 0.751656 4.3:-3526323 None:intergenic
GTACTTGAAAGAGCACCCTG+AGG 0.755804 4.3:+3526116 MS.gene55882:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATGAACTAATTAATT+AGG - chr4.3:3526031-3526050 None:intergenic 10.0%
!! AGAAATATATTAAGATTAAT+AGG + chr4.3:3527205-3527224 MS.gene55882:CDS 10.0%
!! GAAATATATTAAGATTAATA+GGG + chr4.3:3527206-3527225 MS.gene55882:CDS 10.0%
!! TTAATTAGTTCATTAATTAA+TGG + chr4.3:3526033-3526052 MS.gene55882:intron 10.0%
!! AATTTATTCATACAATGATA+AGG + chr4.3:3527086-3527105 MS.gene55882:CDS 15.0%
!!! ATATAATCATACTTGATTTT+CGG - chr4.3:3525967-3525986 None:intergenic 15.0%
!! AGATATGAAATGATTATTGA+AGG + chr4.3:3527243-3527262 MS.gene55882:CDS 20.0%
!! AGTTAGTTAATTCATCATAA+GGG - chr4.3:3525917-3525936 None:intergenic 20.0%
!!! AGTTCATTAATTAATGGTTT+TGG + chr4.3:3526039-3526058 MS.gene55882:intron 20.0%
!!! TTAATTTTGAATAACTCTTG+AGG - chr4.3:3526478-3526497 None:intergenic 20.0%
! AAATATGAGTGAACAAACTT+TGG + chr4.3:3527467-3527486 MS.gene55882:CDS 25.0%
! GAGTTAGTTAATTCATCATA+AGG - chr4.3:3525918-3525937 None:intergenic 25.0%
! TATATTAATGTGTATTGTGC+AGG + chr4.3:3526071-3526090 MS.gene55882:intron 25.0%
! TGAAATTGAATATATCTCCA+GGG + chr4.3:3527397-3527416 MS.gene55882:CDS 25.0%
!!! ATTTTACTTGAGAGTGTTTA+TGG - chr4.3:3526530-3526549 None:intergenic 25.0%
AGTTTCATGGAACAAATAAG+AGG + chr4.3:3526213-3526232 MS.gene55882:CDS 30.0%
CTGAAATTGAATATATCTCC+AGG + chr4.3:3527396-3527415 MS.gene55882:CDS 30.0%
GATGAATTAACTAACTCTTC+AGG + chr4.3:3525921-3525940 MS.gene55882:CDS 30.0%
GCATTATTTCAAGACTATCA+TGG + chr4.3:3526162-3526181 MS.gene55882:CDS 30.0%
GTTGAACTGTTATACCTAAA+GGG - chr4.3:3526855-3526874 None:intergenic 30.0%
TCTTCAGGAGTTATACAAAT+GGG + chr4.3:3525936-3525955 MS.gene55882:CDS 30.0%
TGAAACCATTATAATCCTCA+GGG - chr4.3:3526134-3526153 None:intergenic 30.0%
TTATACCTAAAGGGTTTGAA+GGG - chr4.3:3526846-3526865 None:intergenic 30.0%
TTGGAATTGAGTGTTTGAAA+GGG + chr4.3:3527277-3527296 MS.gene55882:CDS 30.0%
TTGTGTTTGTGAAGATATCA+AGG - chr4.3:3527145-3527164 None:intergenic 30.0%
! ATCATAAGGGTTTTCATCAT+AGG - chr4.3:3525904-3525923 None:intergenic 30.0%
! TAAATCATTCAGAAGTGCAA+TGG + chr4.3:3526188-3526207 MS.gene55882:CDS 30.0%
! TATAGTCTCTCTAAAGATCT+TGG + chr4.3:3527039-3527058 MS.gene55882:CDS 30.0%
! TCTTTTGCTTGTACTTTTGT+AGG + chr4.3:3526665-3526684 MS.gene55882:intron 30.0%
! TTCACAAACACAACAGTTTT+TGG + chr4.3:3527152-3527171 MS.gene55882:CDS 30.0%
ACAAACTTTGGATGTTGCAT+TGG + chr4.3:3527479-3527498 MS.gene55882:CDS 35.0%
ATATATAGTCTACGCAAGCA+TGG - chr4.3:3526626-3526645 None:intergenic 35.0%
ATTCTTACCCTGGATAGTAA+GGG - chr4.3:3526353-3526372 None:intergenic 35.0%
ATTGCAATTTCTGACACTCA+TGG + chr4.3:3525846-3525865 MS.gene55882:CDS 35.0%
CGTTGAACTGTTATACCTAA+AGG - chr4.3:3526856-3526875 None:intergenic 35.0%
CTCTTCAGGAGTTATACAAA+TGG + chr4.3:3525935-3525954 MS.gene55882:CDS 35.0%
CTGAAACCATTATAATCCTC+AGG - chr4.3:3526135-3526154 None:intergenic 35.0%
GGAAAGAATACGTAACTTCA+TGG + chr4.3:3527500-3527519 MS.gene55882:CDS 35.0%
GTAGGTTTGATAGAGACTTA+AGG + chr4.3:3526683-3526702 MS.gene55882:intron 35.0%
GTTATACCTAAAGGGTTTGA+AGG - chr4.3:3526847-3526866 None:intergenic 35.0%
GTTGGAATTGAGTGTTTGAA+AGG + chr4.3:3527276-3527295 MS.gene55882:CDS 35.0%
GTTGTTTATCCAAACATAGC+CGG - chr4.3:3526391-3526410 None:intergenic 35.0%
TCAATGAACATGAAAGTGAG+TGG + chr4.3:3526805-3526824 MS.gene55882:CDS 35.0%
TGTGCAGGTTTCATTTGATT+TGG + chr4.3:3526086-3526105 MS.gene55882:intron 35.0%
TTCATGGAACAAATAAGAGG+TGG + chr4.3:3526216-3526235 MS.gene55882:CDS 35.0%
! ATTGAAGGCTTGAAAAGTGT+TGG + chr4.3:3527258-3527277 MS.gene55882:CDS 35.0%
! TTAGTTGACTCCTTCAAAAG+TGG - chr4.3:3527336-3527355 None:intergenic 35.0%
!! ACTTTTGAAGGAGTCAACTA+AGG + chr4.3:3527335-3527354 MS.gene55882:CDS 35.0%
!! GAATTTGAGTCCACTTTTGA+AGG + chr4.3:3527323-3527342 MS.gene55882:CDS 35.0%
AAGTGCAATGGCAAGTTTCA+TGG + chr4.3:3526200-3526219 MS.gene55882:CDS 40.0%
AATGAAGCTAGCTAGCTAGA+AGG - chr4.3:3526568-3526587 None:intergenic 40.0%
ACAAACCCTTCAAACCCTTT+AGG + chr4.3:3526838-3526857 MS.gene55882:CDS 40.0%
ACATCTTCTTTGTCCCTGTT+CGG - chr4.3:3527530-3527549 None:intergenic 40.0%
AGGAAGGTGAATTGGAACTT+TGG + chr4.3:3527355-3527374 MS.gene55882:CDS 40.0%
AGGAGTTATACAAATGGGAC+TGG + chr4.3:3525941-3525960 MS.gene55882:CDS 40.0%
ATCTCAGACGAAATCTACTC+GGG + chr4.3:3526928-3526947 MS.gene55882:CDS 40.0%
CATCTCAGACGAAATCTACT+CGG + chr4.3:3526927-3526946 MS.gene55882:CDS 40.0%
GAATCAAGCACCATACAATC+CGG + chr4.3:3526369-3526388 MS.gene55882:intron 40.0%
GATTCTTACCCTGGATAGTA+AGG - chr4.3:3526354-3526373 None:intergenic 40.0%
GGCTAATATGCTATCAGACA+AGG + chr4.3:3527173-3527192 MS.gene55882:CDS 40.0%
GGTTTGATAGAGACTTAAGG+TGG + chr4.3:3526686-3526705 MS.gene55882:intron 40.0%
GTCAACTAAGGAAGGTGAAT+TGG + chr4.3:3527347-3527366 MS.gene55882:CDS 40.0%
TCTAAAGATCTTGGTCTACC+AGG + chr4.3:3527048-3527067 MS.gene55882:CDS 40.0%
TCTTGTCATTGTGATCAACC+TGG + chr4.3:3527423-3527442 MS.gene55882:CDS 40.0%
TGTAAGCATAGCAGAGATTC+TGG + chr4.3:3526975-3526994 MS.gene55882:CDS 40.0%
TTCTTACCCTGGATAGTAAG+GGG - chr4.3:3526352-3526371 None:intergenic 40.0%
TTGAAGGAGTCAACTAAGGA+AGG + chr4.3:3527339-3527358 MS.gene55882:CDS 40.0%
TTTGACCTGTTGCAGTGAAT+TGG - chr4.3:3526733-3526752 None:intergenic 40.0%
! AGTAGATTTCGTCTGAGATG+AGG - chr4.3:3526927-3526946 None:intergenic 40.0%
!! ATTGTTCCAACTCTGAAACC+TGG - chr4.3:3527069-3527088 None:intergenic 40.0%
!! GGAATGCAGGATTGTTTTGT+TGG + chr4.3:3527298-3527317 MS.gene55882:CDS 40.0%
!! TAAGCTGCTTCTAAAGCTTG+AGG - chr4.3:3526772-3526791 None:intergenic 40.0%
!! TGATCAACCTGGTTGGTTTA+GGG + chr4.3:3527434-3527453 MS.gene55882:CDS 40.0%
AAACAGACCCTAAACCAACC+AGG - chr4.3:3527444-3527463 None:intergenic 45.0%
ACCTTCATTCTTGCAAACCC+CGG + chr4.3:3526306-3526325 MS.gene55882:CDS 45.0%
AGAGACTTAAGGTGGAGAAC+TGG + chr4.3:3526694-3526713 MS.gene55882:CDS 45.0%
ATGGTGCTTGATTCTTACCC+TGG - chr4.3:3526363-3526382 None:intergenic 45.0%
CCAAACATAGCCGGATTGTA+TGG - chr4.3:3526382-3526401 None:intergenic 45.0%
CCATACAATCCGGCTATGTT+TGG + chr4.3:3526379-3526398 MS.gene55882:intron 45.0%
GAAAACTCACCCTACTTTGC+TGG + chr4.3:3525870-3525889 MS.gene55882:CDS 45.0%
GAAAGAATAGTCATCACCGC+CGG + chr4.3:3526258-3526277 MS.gene55882:CDS 45.0%
GAGCACCCTGAGGATTATAA+TGG + chr4.3:3526126-3526145 MS.gene55882:CDS 45.0%
GAGTGTTTGAAAGGGAATGC+AGG + chr4.3:3527285-3527304 MS.gene55882:CDS 45.0%
GCGGTGATGACTATTCTTTC+TGG - chr4.3:3526258-3526277 None:intergenic 45.0%
GCTTTCCATCCAGCAAAGTA+GGG - chr4.3:3525882-3525901 None:intergenic 45.0%
GTCATTGTGATCAACCTGGT+TGG + chr4.3:3527427-3527446 MS.gene55882:CDS 45.0%
TAGTGCCAATTCACTGCAAC+AGG + chr4.3:3526725-3526744 MS.gene55882:CDS 45.0%
TCACAATGACAAGAACACCC+TGG - chr4.3:3527417-3527436 None:intergenic 45.0%
TTCCTACCCCTTACTATCCA+GGG + chr4.3:3526343-3526362 MS.gene55882:CDS 45.0%
! AGATTTCGTCTGAGATGAGG+TGG - chr4.3:3526924-3526943 None:intergenic 45.0%
!! GTGATCAACCTGGTTGGTTT+AGG + chr4.3:3527433-3527452 MS.gene55882:CDS 45.0%
ACTCACCCTACTTTGCTGGA+TGG + chr4.3:3525874-3525893 MS.gene55882:CDS 50.0%
AGACGAAATCTACTCGGGCT+CGG + chr4.3:3526933-3526952 MS.gene55882:CDS 50.0%
GGCTTTCCATCCAGCAAAGT+AGG - chr4.3:3525883-3525902 None:intergenic 50.0%
GGTCTACCAGGTTTCAGAGT+TGG + chr4.3:3527060-3527079 MS.gene55882:CDS 50.0%
GTAAGGGGTAGGAACAAGCA+AGG - chr4.3:3526337-3526356 None:intergenic 50.0%
GTTCCTACCCCTTACTATCC+AGG + chr4.3:3526342-3526361 MS.gene55882:CDS 50.0%
TACCCTGGATAGTAAGGGGT+AGG - chr4.3:3526348-3526367 None:intergenic 50.0%
! AACTTCATGGCTAGCCGAAC+AGG + chr4.3:3527513-3527532 MS.gene55882:CDS 50.0%
! ACTTCATGGCTAGCCGAACA+GGG + chr4.3:3527514-3527533 MS.gene55882:CDS 50.0%
!! GTACTTGAAAGAGCACCCTG+AGG + chr4.3:3526116-3526135 MS.gene55882:CDS 50.0%
CTCATTAGCCGCAGTTGCTC+CGG - chr4.3:3526280-3526299 None:intergenic 55.0%
GCCGGGGTTTGCAAGAATGA+AGG - chr4.3:3526310-3526329 None:intergenic 55.0%
!! AGGAACAAGCAAGGCATCGC+CGG - chr4.3:3526328-3526347 None:intergenic 55.0%
ATTAGCCGCAGTTGCTCCGG+CGG - chr4.3:3526277-3526296 None:intergenic 60.0%
!! GAACAAGCAAGGCATCGCCG+GGG - chr4.3:3526326-3526345 None:intergenic 60.0%
!! GGAACAAGCAAGGCATCGCC+GGG - chr4.3:3526327-3526346 None:intergenic 60.0%
CATCACCGCCGGAGCAACTG+CGG + chr4.3:3526269-3526288 MS.gene55882:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 3525804 3527551 3525804 ID=MS.gene55882
chr4.3 mRNA 3525804 3527551 3525804 ID=MS.gene55882.t1;Parent=MS.gene55882
chr4.3 exon 3525804 3525974 3525804 ID=MS.gene55882.t1.exon1;Parent=MS.gene55882.t1
chr4.3 CDS 3525804 3525974 3525804 ID=cds.MS.gene55882.t1;Parent=MS.gene55882.t1
chr4.3 exon 3526093 3526364 3526093 ID=MS.gene55882.t1.exon2;Parent=MS.gene55882.t1
chr4.3 CDS 3526093 3526364 3526093 ID=cds.MS.gene55882.t1;Parent=MS.gene55882.t1
chr4.3 exon 3526687 3527551 3526687 ID=MS.gene55882.t1.exon3;Parent=MS.gene55882.t1
chr4.3 CDS 3526687 3527551 3526687 ID=cds.MS.gene55882.t1;Parent=MS.gene55882.t1
Gene Sequence

>MS.gene55882

ATGGGTATTGAGATAGAACAAACATGTGTGCAGCTTTCAAACATTGCAATTTCTGACACTCATGGAGAAAACTCACCCTACTTTGCTGGATGGAAAGCCTATGATGAAAACCCTTATGATGAATTAACTAACTCTTCAGGAGTTATACAAATGGGACTGGCCGAAAATCAAGTATGATTATATATATCTTGAATAAGTCTTTTTATGTCTATATATAATTAGCTCCTAATTAATTAGTTCATTAATTAATGGTTTTGGAACTAACTATATATTAATGTGTATTGTGCAGGTTTCATTTGATTTGGTAGAAAAGTACTTGAAAGAGCACCCTGAGGATTATAATGGTTTCAGAGAGAATGCATTATTTCAAGACTATCATGGACTTAAATCATTCAGAAGTGCAATGGCAAGTTTCATGGAACAAATAAGAGGTGGTAGAGCTAAATTTGATCCAGAAAGAATAGTCATCACCGCCGGAGCAACTGCGGCTAATGAGCTTTTAACCTTCATTCTTGCAAACCCCGGCGATGCCTTGCTTGTTCCTACCCCTTACTATCCAGGGTAAGAATCAAGCACCATACAATCCGGCTATGTTTGGATAAACAACTTAATTAATAAACTATTTTTAAAAATACAAGATAAAATACAATTAAACTATTTTCATCAACTATCCTCAAGAGTTATTCAAAATTAAATAGTTTAAGAACAAGTCATAAATTGTTTCCATAAACACTCTCAAGTAAAATATTTATTGATAAAAACCTTCTAGCTAGCTAGCTTCATTTGTTTTAATTTGTCATTTGAAGCTATAGCATGTAACCATGCTTGCGTAGACTATATATGATGAAATAATCTCATGTATCTTTTGCTTGTACTTTTGTAGGTTTGATAGAGACTTAAGGTGGAGAACTGGTGTAAACATAGTGCCAATTCACTGCAACAGGTCAAACAATTTTCAAATTACACCTCAAGCTTTAGAAGCAGCTTACAAAGAAGCAAAATCAATGAACATGAAAGTGAGTGGAGTACTCATCACAAACCCTTCAAACCCTTTAGGTATAACAGTTCAACGCACAGTTCTTGAAGAGATTCTTGACTTTGTGACTAAAAAGAACATCCACCTCATCTCAGACGAAATCTACTCGGGCTCGGTCTTTAATTCATCTGAGTTTGTAAGCATAGCAGAGATTCTGGAAGCTCGTCGATACAAAGATGCAGAGAGAGTTCACATTGTTTATAGTCTCTCTAAAGATCTTGGTCTACCAGGTTTCAGAGTTGGAACAATTTATTCATACAATGATAAGGTTGTAACAACAGCGCGAAGAATGTCGAGTTTTACCTTGATATCTTCACAAACACAACAGTTTTTGGCTAATATGCTATCAGACAAGGAGTTTACAGAGAAATATATTAAGATTAATAGGGAAAGATTAAAGAAGAGATATGAAATGATTATTGAAGGCTTGAAAAGTGTTGGAATTGAGTGTTTGAAAGGGAATGCAGGATTGTTTTGTTGGATGAATTTGAGTCCACTTTTGAAGGAGTCAACTAAGGAAGGTGAATTGGAACTTTGGAATGTTGTTTTGAATGAACTGAAATTGAATATATCTCCAGGGTGTTCTTGTCATTGTGATCAACCTGGTTGGTTTAGGGTCTGTTTTGCAAATATGAGTGAACAAACTTTGGATGTTGCATTGGAAAGAATACGTAACTTCATGGCTAGCCGAACAGGGACAAAGAAGATGTAA
Protein sequence

>MS.gene55882.t1

MGIEIEQTCVQLSNIAISDTHGENSPYFAGWKAYDENPYDELTNSSGVIQMGLAENQVSFDLVEKYLKEHPEDYNGFRENALFQDYHGLKSFRSAMASFMEQIRGGRAKFDPERIVITAGATAANELLTFILANPGDALLVPTPYYPGFDRDLRWRTGVNIVPIHCNRSNNFQITPQALEAAYKEAKSMNMKVSGVLITNPSNPLGITVQRTVLEEILDFVTKKNIHLISDEIYSGSVFNSSEFVSIAEILEARRYKDAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQQFLANMLSDKEFTEKYIKINRERLKKRYEMIIEGLKSVGIECLKGNAGLFCWMNLSPLLKESTKEGELELWNVVLNELKLNISPGCSCHCDQPGWFRVCFANMSEQTLDVALERIRNFMASRTGTKKM