AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064035

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064035.t1 MTR_6g091760 98.423 444 7 0 1 444 1 444 0.0 917
MS.gene064035.t1 MTR_8g101750 81.465 437 73 2 1 437 1 429 0.0 753
MS.gene064035.t1 MTR_8g101820 75.744 437 85 3 1 437 1 416 0.0 694
MS.gene064035.t1 MTR_5g015020 61.111 432 159 5 14 436 4 435 0.0 557
MS.gene064035.t1 MTR_4g097540 60.325 431 161 4 14 434 4 434 0.0 552
MS.gene064035.t1 MTR_3g103550 58.411 428 173 2 14 436 2 429 0.0 547
MS.gene064035.t1 MTR_8g028600 56.308 428 185 2 14 440 11 437 0.0 525
MS.gene064035.t1 MTR_8g098930 55.530 443 190 5 1 438 1 441 0.0 520
MS.gene064035.t1 MTR_7g079080 56.279 430 187 1 14 442 11 440 0.0 520
MS.gene064035.t1 MTR_6g463260 44.444 432 237 2 12 441 102 532 2.74e-146 427
MS.gene064035.t1 MTR_7g079080 55.522 335 149 0 108 442 1 335 1.36e-139 405
MS.gene064035.t1 MTR_5g011400 44.010 409 221 3 26 430 84 488 2.47e-131 388
MS.gene064035.t1 MTR_2g090730 57.692 78 29 1 81 158 27 100 4.71e-22 94.0
MS.gene064035.t1 MTR_5g033230 25.301 332 222 14 73 382 83 410 4.36e-18 86.7
MS.gene064035.t1 MTR_5g033230 25.301 332 222 14 73 382 83 410 4.87e-18 86.7
MS.gene064035.t1 MTR_8g023140 23.181 371 257 14 86 433 149 514 6.76e-18 86.3
MS.gene064035.t1 MTR_4g011820 22.917 336 222 12 105 431 75 382 1.38e-14 75.5
MS.gene064035.t1 MTR_8g061360 21.168 411 276 15 46 440 38 416 1.54e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064035.t1 AT4G26200 75.174 431 104 3 12 439 16 446 0.0 662
MS.gene064035.t1 AT4G37770 60.563 426 164 2 14 435 4 429 0.0 556
MS.gene064035.t1 AT4G08040 60.798 426 166 1 14 438 2 427 0.0 554
MS.gene064035.t1 AT5G65800 58.837 430 173 2 13 438 3 432 0.0 544
MS.gene064035.t1 AT3G49700 58.333 432 176 2 13 440 3 434 0.0 541
MS.gene064035.t1 AT2G22810 58.333 432 175 3 12 438 2 433 0.0 537
MS.gene064035.t1 AT3G61510 58.531 422 171 2 14 434 11 429 0.0 535
MS.gene064035.t1 AT4G11280 58.019 424 177 1 14 436 15 438 0.0 528
MS.gene064035.t1 AT1G01480 54.756 431 191 3 14 440 12 442 9.49e-179 509
MS.gene064035.t1 AT1G01480 53.869 336 152 2 108 440 1 336 7.84e-137 398
MS.gene064035.t1 AT5G51690 43.091 427 240 2 12 436 67 492 4.74e-136 400
MS.gene064035.t1 AT1G62960 42.787 409 229 3 24 431 143 547 2.41e-127 380
MS.gene064035.t1 AT5G51690 45.402 348 189 1 89 436 23 369 7.83e-121 357
MS.gene064035.t1 AT1G72330 24.865 370 252 14 86 433 165 530 5.04e-20 93.2
MS.gene064035.t1 AT1G23310 26.259 278 185 10 91 352 103 376 7.26e-20 92.0
MS.gene064035.t1 AT1G23310 26.259 278 185 10 91 352 103 376 9.94e-20 91.7
MS.gene064035.t1 AT1G70580 25.540 278 187 10 91 352 103 376 5.90e-19 89.4
MS.gene064035.t1 AT1G70580 25.540 278 187 10 91 352 103 376 5.90e-19 89.4
MS.gene064035.t1 AT1G70580 25.540 278 187 10 91 352 103 376 5.90e-19 89.4
MS.gene064035.t1 AT1G70580 25.540 278 187 10 91 352 103 376 5.90e-19 89.4
MS.gene064035.t1 AT1G72330 24.021 383 252 14 86 433 165 543 2.87e-18 87.8
MS.gene064035.t1 AT1G72330 25.573 262 181 8 86 336 165 423 7.51e-18 85.9
MS.gene064035.t1 AT1G17290 24.161 298 206 11 86 367 168 461 1.16e-17 85.9
MS.gene064035.t1 AT1G80360 23.678 397 252 16 43 431 28 381 1.52e-16 81.6
MS.gene064035.t1 AT1G80360 23.678 397 252 16 43 431 28 381 1.52e-16 81.6
MS.gene064035.t1 AT1G80360 23.678 397 252 16 43 431 28 381 1.52e-16 81.6
MS.gene064035.t1 AT1G80360 23.678 397 252 16 43 431 28 381 1.52e-16 81.6
MS.gene064035.t1 AT1G77670 24.458 323 214 11 121 437 141 439 1.89e-14 75.5
MS.gene064035.t1 AT4G23600 23.056 360 236 14 96 440 78 411 5.08e-14 73.9
MS.gene064035.t1 AT5G36160 21.813 353 235 13 96 433 85 411 6.47e-13 70.5
MS.gene064035.t1 AT2G20610 22.284 359 240 14 96 440 109 442 1.87e-12 69.3
MS.gene064035.t1 AT4G23600 23.263 331 215 13 125 440 1 307 8.15e-12 66.6
MS.gene064035.t1 AT2G20610 23.810 273 177 10 96 358 109 360 8.79e-12 67.0
MS.gene064035.t1 AT4G23600 23.264 288 188 10 96 370 78 345 2.87e-11 65.5

Find 78 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCCGAACCCGGTTGGTTT+AGG 0.229798 6.1:-79351020 MS.gene064035:CDS
TTCCGAACCCGGTTGGTTTA+GGG 0.281999 6.1:-79351019 MS.gene064035:CDS
TTGTGTTTGTGAAGATATTA+AGG 0.307747 6.1:+79351311 None:intergenic
TGTAACAACTTTATCGTTGT+AGG 0.335375 6.1:+79351359 None:intergenic
ATTTCTTACCCAGGATAGTA+TGG 0.344459 6.1:+79352206 None:intergenic
CGCTGAATCGATATGCCTAA+TGG 0.346514 6.1:+79351600 None:intergenic
AGGTCAATAGAGAAAGATTA+AGG 0.358277 6.1:-79351236 MS.gene064035:CDS
GCTTTCCATCCAGCAAAGTA+TGG 0.363582 6.1:+79352787 None:intergenic
CATGAAATAACTAACCCTTC+TGG 0.371377 6.1:-79352745 MS.gene064035:CDS
GAAAATTCTCCATACTTTGC+TGG 0.375504 6.1:-79352796 MS.gene064035:CDS
AAAAGCAATGGCAAGTTTCA+TGG 0.377867 6.1:-79352357 MS.gene064035:CDS
AACCCTAAACCAACCGGGTT+CGG 0.381536 6.1:+79351017 None:intergenic
GGGTTAGTTATTTCATGATA+AGG 0.383889 6.1:+79352751 None:intergenic
GATATGCCTAATGGATTTGA+TGG 0.385429 6.1:+79351609 None:intergenic
GGTTAGTTATTTCATGATAA+GGG 0.406672 6.1:+79352752 None:intergenic
GAGCAGGTGAATTGAAGCTT+TGG 0.427210 6.1:-79351098 MS.gene064035:CDS
ATTGAAGGTTTGAAAAGTGC+TGG 0.436332 6.1:-79351195 MS.gene064035:CDS
AAAACAAACCCTAAACCAAC+CGG 0.440582 6.1:+79351011 None:intergenic
ACTTTCATCCTTGCAAATCC+AGG 0.440957 6.1:-79352251 MS.gene064035:CDS
GATTTGATAGAGATTTAAGA+TGG 0.441356 6.1:-79351767 MS.gene064035:CDS
AGATATGAAATGATCATTGA+AGG 0.446464 6.1:-79351210 MS.gene064035:CDS
GCATTATTTCAAGACTATCA+TGG 0.449699 6.1:-79352395 MS.gene064035:CDS
TCTTGTCATTGTTCCGAACC+CGG 0.453246 6.1:-79351030 MS.gene064035:CDS
CCCTTCTGGAGTTATACAAA+TGG 0.454742 6.1:-79352731 MS.gene064035:CDS
AGAGATTTAAGATGGAGAAC+TGG 0.456614 6.1:-79351759 MS.gene064035:CDS
GTTCCAACACCATACTATCC+TGG 0.457037 6.1:-79352215 MS.gene064035:CDS
AACAAGGACAGAAAGGATAC+AGG 0.467234 6.1:-79350928 MS.gene064035:CDS
TGGAGTTATACAAATGGGCT+TGG 0.477948 6.1:-79352725 MS.gene064035:CDS
GATGAAAGTCAAGAGTTCAT+TGG 0.480725 6.1:+79352265 None:intergenic
CTTGTATTACTTTCCAACAT+TGG 0.485720 6.1:+79351120 None:intergenic
GAGGCATCAACATGGGGAAA+AGG 0.488094 6.1:-79352440 MS.gene064035:CDS
TATAGTCTTTCAAAAGATCT+CGG 0.492463 6.1:-79351414 MS.gene064035:CDS
CCTTCTGGAGTTATACAAAT+GGG 0.492469 6.1:-79352730 MS.gene064035:CDS
CTTGAGCTATCACAATGGAT+TGG 0.496719 6.1:+79351723 None:intergenic
ATTCTCCATACTTTGCTGGA+TGG 0.499110 6.1:-79352792 MS.gene064035:CDS
GTCATTGTTCCGAACCCGGT+TGG 0.507280 6.1:-79351026 MS.gene064035:CDS
TTGGAAAGTAATACAAGAGC+AGG 0.510180 6.1:-79351114 MS.gene064035:CDS
GAATGCTTGAAAGGTAATGC+AGG 0.512496 6.1:-79351168 MS.gene064035:CDS
GAAAGAATTGTCCTCACTGC+TGG 0.516086 6.1:-79352299 MS.gene064035:CDS
TCAAAAGATCTCGGTCTACC+AGG 0.516620 6.1:-79351405 MS.gene064035:CDS
TACCCAGGATAGTATGGTGT+TGG 0.517904 6.1:+79352212 None:intergenic
CGTGAATAACAAGGACAGAA+AGG 0.525366 6.1:-79350935 MS.gene064035:CDS
CCCATTTGTATAACTCCAGA+AGG 0.531454 6.1:+79352730 None:intergenic
TTCCAACACCATACTATCCT+GGG 0.532294 6.1:-79352214 MS.gene064035:intron
ATTGCAACTTCTGAAACTCA+TGG 0.536344 6.1:-79352820 MS.gene064035:CDS
GATGAATATGAGTCCAATGT+TGG 0.544594 6.1:-79351133 MS.gene064035:CDS
TTTCACTGATAATTACATCA+AGG 0.546541 6.1:-79351256 MS.gene064035:CDS
GCCTAATGGATTTGATGGGT+TGG 0.548657 6.1:+79351614 None:intergenic
GGAACAAGTAAAGCATCTCC+TGG 0.548786 6.1:+79352233 None:intergenic
TTGACGAGATTCAAGAATCT+CGG 0.556243 6.1:+79351467 None:intergenic
TGTCTCAGACGAAATCTACT+CGG 0.564955 6.1:-79351526 MS.gene064035:CDS
GTTAAGCTTAATATTTCACC+AGG 0.577298 6.1:-79351057 MS.gene064035:CDS
TAAATCATTCAGAAAAGCAA+TGG 0.582708 6.1:-79352369 MS.gene064035:CDS
GCTGGAATTGAATGCTTGAA+AGG 0.592728 6.1:-79351177 MS.gene064035:CDS
AACACTCAGAGGCATCAACA+TGG 0.595204 6.1:-79352448 MS.gene064035:CDS
ACCAACCCATCAAATCCATT+AGG 0.597602 6.1:-79351615 MS.gene064035:CDS
ATTGTTCCGACTCTGAAACC+TGG 0.601886 6.1:+79351387 None:intergenic
ACACTCAGAGGCATCAACAT+GGG 0.602352 6.1:-79352447 MS.gene064035:CDS
GTCTCAGACGAAATCTACTC+GGG 0.602761 6.1:-79351525 MS.gene064035:CDS
GGTCTACCAGGTTTCAGAGT+CGG 0.613246 6.1:-79351393 MS.gene064035:CDS
GCATCAACATGGGGAAAAGG+TGG 0.616595 6.1:-79352437 MS.gene064035:CDS
ACAAGGACAGAAAGGATACA+GGG 0.626149 6.1:-79350927 MS.gene064035:CDS
CACTCAGAGGCATCAACATG+GGG 0.626693 6.1:-79352446 MS.gene064035:CDS
AGTAGATTTCGTCTGAGACA+AGG 0.630503 6.1:+79351529 None:intergenic
AAGCATCTCCTGGATTTGCA+AGG 0.633214 6.1:+79352243 None:intergenic
CCATTTGTATAACTCCAGAA+GGG 0.643005 6.1:+79352731 None:intergenic
ATATGCCTAATGGATTTGAT+GGG 0.644532 6.1:+79351610 None:intergenic
ACGTGATTTCGTGAATAACA+AGG 0.646285 6.1:-79350944 MS.gene064035:CDS
GATTCAGCGTTCAGTTCTCG+AGG 0.650635 6.1:-79351586 MS.gene064035:CDS
ATATTTGAAAGTTCAACACA+AGG 0.665047 6.1:+79352841 None:intergenic
AAACAAACCCTAAACCAACC+GGG 0.670128 6.1:+79351012 None:intergenic
TATTTGAAAGTTCAACACAA+GGG 0.671806 6.1:+79352842 None:intergenic
GAACAATGACAAGAACAACC+TGG 0.683485 6.1:+79351039 None:intergenic
AATTGCTTGAGCTATCACAA+TGG 0.694090 6.1:+79351718 None:intergenic
CAGCAGTAGCACCAGCAGTG+AGG 0.696586 6.1:+79352288 None:intergenic
ATACTTGGAAGAACACTCAG+AGG 0.699650 6.1:-79352459 MS.gene064035:CDS
AATGCTTGAAAGGTAATGCA+GGG 0.724648 6.1:-79351167 MS.gene064035:CDS
ATCTCGTCAATACAAAGACG+CGG 0.725438 6.1:-79351454 MS.gene064035:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATAAAAATTTTGGTAT+AGG + chr6.1:79351674-79351693 None:intergenic 10.0%
!!! TATTTCTAAATTCGAAAATA+TGG - chr6.1:79351849-79351868 MS.gene064035:intron 15.0%
!!! TATTTTGTTTGAAATTCTTT+AGG - chr6.1:79351285-79351304 MS.gene064035:CDS 15.0%
!! GACAATATAAGTACAATAAT+TGG - chr6.1:79351963-79351982 MS.gene064035:intron 20.0%
!! TCTCTTACCATAATTAATAA+TGG - chr6.1:79351642-79351661 MS.gene064035:CDS 20.0%
!! TGATTTACTTGAAAAATACT+TGG - chr6.1:79351315-79351334 MS.gene064035:CDS 20.0%
!!! ATAAAAATTTTGGTATAGGA+AGG + chr6.1:79351670-79351689 None:intergenic 20.0%
!!! GATATATGTACTTTAAAGAA+AGG - chr6.1:79351196-79351215 MS.gene064035:CDS 20.0%
!!! TATTTGCTTAAATGCATTTT+TGG - chr6.1:79351790-79351809 MS.gene064035:intron 20.0%
! AGATATGAAATGATCATTGA+AGG - chr6.1:79352579-79352598 MS.gene064035:intron 25.0%
! AGTTTCATGGAAAAAATTAG+AGG - chr6.1:79351445-79351464 MS.gene064035:CDS 25.0%
! ATATTTGAAAGTTCAACACA+AGG + chr6.1:79350951-79350970 None:intergenic 25.0%
! GAAGGTTCCATTATTAATTA+TGG + chr6.1:79351652-79351671 None:intergenic 25.0%
! GATTTGATAGAGATTTAAGA+TGG - chr6.1:79352022-79352041 MS.gene064035:intron 25.0%
! TAAATCATTCAGAAAAGCAA+TGG - chr6.1:79351420-79351439 MS.gene064035:CDS 25.0%
! TATAGTCTTTCAAAAGATCT+CGG - chr6.1:79352375-79352394 MS.gene064035:CDS 25.0%
! TATTTGAAAGTTCAACACAA+GGG + chr6.1:79350950-79350969 None:intergenic 25.0%
! TTGTGTTTGTGAAGATATTA+AGG + chr6.1:79352481-79352500 None:intergenic 25.0%
! TTTCACTGATAATTACATCA+AGG - chr6.1:79352533-79352552 MS.gene064035:intron 25.0%
!! GGTTAGTTATTTCATGATAA+GGG + chr6.1:79351040-79351059 None:intergenic 25.0%
!!! TCAAACTTTTTTTTTTCCCT+TGG - chr6.1:79351707-79351726 MS.gene064035:CDS 25.0%
AAAGAGATAATTTCTTACCC+AGG + chr6.1:79351595-79351614 None:intergenic 30.0%
AGGTCAATAGAGAAAGATTA+AGG - chr6.1:79352553-79352572 MS.gene064035:intron 30.0%
CTTGTATTACTTTCCAACAT+TGG + chr6.1:79352672-79352691 None:intergenic 30.0%
GCATTATTTCAAGACTATCA+TGG - chr6.1:79351394-79351413 MS.gene064035:CDS 30.0%
GTTAAGCTTAATATTTCACC+AGG - chr6.1:79352732-79352751 MS.gene064035:CDS 30.0%
TGTAACAACTTTATCGTTGT+AGG + chr6.1:79352433-79352452 None:intergenic 30.0%
! ATGATAAGGGTTTTCATCAT+AGG + chr6.1:79351027-79351046 None:intergenic 30.0%
! TGCTTTTACTTTCATGTTCA+TGG + chr6.1:79352145-79352164 None:intergenic 30.0%
!! ATATGCCTAATGGATTTGAT+GGG + chr6.1:79352182-79352201 None:intergenic 30.0%
!! GGGTTAGTTATTTCATGATA+AGG + chr6.1:79351041-79351060 None:intergenic 30.0%
AAAACAAACCCTAAACCAAC+CGG + chr6.1:79352781-79352800 None:intergenic 35.0%
AAAAGCAATGGCAAGTTTCA+TGG - chr6.1:79351432-79351451 MS.gene064035:CDS 35.0%
AATGCTTGAAAGGTAATGCA+GGG - chr6.1:79352622-79352641 MS.gene064035:intron 35.0%
AATTGCTTGAGCTATCACAA+TGG + chr6.1:79352074-79352093 None:intergenic 35.0%
ACGTGATTTCGTGAATAACA+AGG - chr6.1:79352845-79352864 MS.gene064035:CDS 35.0%
ATTTCTTACCCAGGATAGTA+TGG + chr6.1:79351586-79351605 None:intergenic 35.0%
CATGAAATAACTAACCCTTC+TGG - chr6.1:79351044-79351063 MS.gene064035:CDS 35.0%
CCATTTGTATAACTCCAGAA+GGG + chr6.1:79351061-79351080 None:intergenic 35.0%
GAAAATTCTCCATACTTTGC+TGG - chr6.1:79350993-79351012 MS.gene064035:CDS 35.0%
GATGAAAGTCAAGAGTTCAT+TGG + chr6.1:79351527-79351546 None:intergenic 35.0%
GATGAATATGAGTCCAATGT+TGG - chr6.1:79352656-79352675 MS.gene064035:intron 35.0%
TAAATGCTTGCAAGTTCCAA+GGG + chr6.1:79351726-79351745 None:intergenic 35.0%
TTAAATGCTTGCAAGTTCCA+AGG + chr6.1:79351727-79351746 None:intergenic 35.0%
TTGACGAGATTCAAGAATCT+CGG + chr6.1:79352325-79352344 None:intergenic 35.0%
TTGGAAAGTAATACAAGAGC+AGG - chr6.1:79352675-79352694 MS.gene064035:intron 35.0%
TTTGCTTATATCGTTGACAC+AGG + chr6.1:79351141-79351160 None:intergenic 35.0%
! AGAGATTTAAGATGGAGAAC+TGG - chr6.1:79352030-79352049 MS.gene064035:intron 35.0%
! ATTGAAGGTTTGAAAAGTGC+TGG - chr6.1:79352594-79352613 MS.gene064035:intron 35.0%
!! ATTGCAACTTCTGAAACTCA+TGG - chr6.1:79350969-79350988 MS.gene064035:CDS 35.0%
!! CCTTCTGGAGTTATACAAAT+GGG - chr6.1:79351059-79351078 MS.gene064035:CDS 35.0%
!! GATATGCCTAATGGATTTGA+TGG + chr6.1:79352183-79352202 None:intergenic 35.0%
!! TCTTTTGAGTGCAAGTTGAA+GGG + chr6.1:79352823-79352842 None:intergenic 35.0%
!! TTCTTTTGAGTGCAAGTTGA+AGG + chr6.1:79352824-79352843 None:intergenic 35.0%
AAACAAACCCTAAACCAACC+GGG + chr6.1:79352780-79352799 None:intergenic 40.0%
AACAAGGACAGAAAGGATAC+AGG - chr6.1:79352861-79352880 MS.gene064035:CDS 40.0%
ACAAGGACAGAAAGGATACA+GGG - chr6.1:79352862-79352881 MS.gene064035:CDS 40.0%
ACCAACCCATCAAATCCATT+AGG - chr6.1:79352174-79352193 MS.gene064035:intron 40.0%
ACTTTCATCCTTGCAAATCC+AGG - chr6.1:79351538-79351557 MS.gene064035:CDS 40.0%
ATACTTGGAAGAACACTCAG+AGG - chr6.1:79351330-79351349 MS.gene064035:CDS 40.0%
ATCTCGTCAATACAAAGACG+CGG - chr6.1:79352335-79352354 MS.gene064035:CDS 40.0%
ATTCTCCATACTTTGCTGGA+TGG - chr6.1:79350997-79351016 MS.gene064035:CDS 40.0%
CCCATTTGTATAACTCCAGA+AGG + chr6.1:79351062-79351081 None:intergenic 40.0%
CGTGAATAACAAGGACAGAA+AGG - chr6.1:79352854-79352873 MS.gene064035:CDS 40.0%
CTTGAGCTATCACAATGGAT+TGG + chr6.1:79352069-79352088 None:intergenic 40.0%
GAACAATGACAAGAACAACC+TGG + chr6.1:79352753-79352772 None:intergenic 40.0%
GAATGCTTGAAAGGTAATGC+AGG - chr6.1:79352621-79352640 MS.gene064035:intron 40.0%
GCTGGAATTGAATGCTTGAA+AGG - chr6.1:79352612-79352631 MS.gene064035:intron 40.0%
TGTCTCAGACGAAATCTACT+CGG - chr6.1:79352263-79352282 MS.gene064035:CDS 40.0%
TTCCAACACCATACTATCCT+GGG - chr6.1:79351575-79351594 MS.gene064035:CDS 40.0%
! AGTAGATTTCGTCTGAGACA+AGG + chr6.1:79352263-79352282 None:intergenic 40.0%
! TGGAGTTATACAAATGGGCT+TGG - chr6.1:79351064-79351083 MS.gene064035:CDS 40.0%
!! CCCTTCTGGAGTTATACAAA+TGG - chr6.1:79351058-79351077 MS.gene064035:CDS 40.0%
!! GTAATGCAGGGTTGTTTTGT+TGG - chr6.1:79352634-79352653 MS.gene064035:intron 40.0%
AAGCATCTCCTGGATTTGCA+AGG + chr6.1:79351549-79351568 None:intergenic 45.0%
CGCTGAATCGATATGCCTAA+TGG + chr6.1:79352192-79352211 None:intergenic 45.0%
GAAAGAATTGTCCTCACTGC+TGG - chr6.1:79351490-79351509 MS.gene064035:CDS 45.0%
GAGCAGGTGAATTGAAGCTT+TGG - chr6.1:79352691-79352710 MS.gene064035:intron 45.0%
GCTTTCCATCCAGCAAAGTA+TGG + chr6.1:79351005-79351024 None:intergenic 45.0%
GTCTCAGACGAAATCTACTC+GGG - chr6.1:79352264-79352283 MS.gene064035:CDS 45.0%
GTTCCAACACCATACTATCC+TGG - chr6.1:79351574-79351593 MS.gene064035:CDS 45.0%
TACCCAGGATAGTATGGTGT+TGG + chr6.1:79351580-79351599 None:intergenic 45.0%
TCAAAAGATCTCGGTCTACC+AGG - chr6.1:79352384-79352403 MS.gene064035:CDS 45.0%
TCTTGTCATTGTTCCGAACC+CGG - chr6.1:79352759-79352778 MS.gene064035:CDS 45.0%
! GGAACAAGTAAAGCATCTCC+TGG + chr6.1:79351559-79351578 None:intergenic 45.0%
!! AACACTCAGAGGCATCAACA+TGG - chr6.1:79351341-79351360 MS.gene064035:CDS 45.0%
!! ACACTCAGAGGCATCAACAT+GGG - chr6.1:79351342-79351361 MS.gene064035:CDS 45.0%
!! ATTGTTCCGACTCTGAAACC+TGG + chr6.1:79352405-79352424 None:intergenic 45.0%
!! GCCTAATGGATTTGATGGGT+TGG + chr6.1:79352178-79352197 None:intergenic 45.0%
!!! AAACTATATTATAAAAATTT+TGG + chr6.1:79351680-79351699 None:intergenic 5.0%
AACCCTAAACCAACCGGGTT+CGG + chr6.1:79352775-79352794 None:intergenic 50.0%
GATTCAGCGTTCAGTTCTCG+AGG - chr6.1:79352203-79352222 MS.gene064035:intron 50.0%
GCATCAACATGGGGAAAAGG+TGG - chr6.1:79351352-79351371 MS.gene064035:CDS 50.0%
GGTCTACCAGGTTTCAGAGT+CGG - chr6.1:79352396-79352415 MS.gene064035:CDS 50.0%
! GAGGCATCAACATGGGGAAA+AGG - chr6.1:79351349-79351368 MS.gene064035:CDS 50.0%
!! CACTCAGAGGCATCAACATG+GGG - chr6.1:79351343-79351362 MS.gene064035:CDS 50.0%
!! TTCCGAACCCGGTTGGTTTA+GGG - chr6.1:79352770-79352789 MS.gene064035:CDS 50.0%
GTCATTGTTCCGAACCCGGT+TGG - chr6.1:79352763-79352782 MS.gene064035:CDS 55.0%
!! GTTCCGAACCCGGTTGGTTT+AGG - chr6.1:79352769-79352788 MS.gene064035:CDS 55.0%
CAGCAGTAGCACCAGCAGTG+AGG + chr6.1:79351504-79351523 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 79350921 79352890 79350921 ID=MS.gene064035
chr6.1 mRNA 79350921 79352890 79350921 ID=MS.gene064035.t1;Parent=MS.gene064035
chr6.1 exon 79352714 79352890 79352714 ID=MS.gene064035.t1.exon1;Parent=MS.gene064035.t1
chr6.1 CDS 79352714 79352890 79352714 ID=cds.MS.gene064035.t1;Parent=MS.gene064035.t1
chr6.1 exon 79352215 79352504 79352215 ID=MS.gene064035.t1.exon2;Parent=MS.gene064035.t1
chr6.1 CDS 79352215 79352504 79352215 ID=cds.MS.gene064035.t1;Parent=MS.gene064035.t1
chr6.1 exon 79350921 79351788 79350921 ID=MS.gene064035.t1.exon3;Parent=MS.gene064035.t1
chr6.1 CDS 79350921 79351788 79350921 ID=cds.MS.gene064035.t1;Parent=MS.gene064035.t1
Gene Sequence

>MS.gene064035

ATGGGTATTGAGATTGAACAAGAACACCCTTGTGTTGAACTTTCAAATATTGCAACTTCTGAAACTCATGGAGAAAATTCTCCATACTTTGCTGGATGGAAAGCCTATGATGAAAACCCTTATCATGAAATAACTAACCCTTCTGGAGTTATACAAATGGGCTTGGCAGAAAATCAAGTAAGTGTATAAATATATCGAAGACGTTTTCAGTGTCTGACCTGTGTCAACGATATAAGCAAAAAAAAAGTACATGTATCTGATATAAATTTTGATCAGATATATGTACTTTAAAGAAAGGAAAAAAAATGTGACACTTAATTATTTTCATTAATTTCTAAGCTTATATTTAACTAGTTGACTAATATATTTTGTTTGAAATTCTTTAGGTATCATTTGATTTACTTGAAAAATACTTGGAAGAACACTCAGAGGCATCAACATGGGGAAAAGGTGGTTCAAGTTTTAGAGATAATGCATTATTTCAAGACTATCATGGACTTAAATCATTCAGAAAAGCAATGGCAAGTTTCATGGAAAAAATTAGAGGAAATAAAGCAAAATTTGATTATGAAAGAATTGTCCTCACTGCTGGTGCTACTGCTGCCAATGAACTCTTGACTTTCATCCTTGCAAATCCAGGAGATGCTTTACTTGTTCCAACACCATACTATCCTGGGTAAGAAATTATCTCTTTTCACACTTCAATACATTTTTATATTTTTCTCTTACCATAATTAATAATGGAACCTTCCTATACCAAAATTTTTATAATATAGTTTCAAAATGTCAAACTTTTTTTTTTCCCTTGGAACTTGCAAGCATTTAACTATTTGCTTTATGAGTATAATAAAAATATATTCTATATAATATATTTGCTTAAATGCATTTTTGGTCGTCTATTTTTACTAATTCATGATTTTAGCTCGTGTATTTCTAAATTCGAAAATATGGTCTTCATGTTTTCAAATTTAATGAGCACTAAAATCGTGAATCTATTAAAAAAATGATCAAACGAGTAATCATCTAAGCATAAAATTCGCGCGACAATATAAGTACAATAATTGGAAAATTAAACTAATGTATATATTTTTTGATTTTGCAGATTTGATAGAGATTTAAGATGGAGAACTGGTGTAAACATAGTTCCAATCCATTGTGATAGCTCAAGCAATTTTCAAATCACACTTGAAGCATTAGAAACTGCATACAAAAATGCAGAATCCATGAACATGAAAGTAAAAGCAGTACTTATCACCAACCCATCAAATCCATTAGGCATATCGATTCAGCGTTCAGTTCTCGAGGACATTCTCAATTTCGTGACTCGCAAGAACATACACCTTGTCTCAGACGAAATCTACTCGGGCTCAGTTTTCTCTTCACATGAATTCATAAGCATAGCCGAGATTCTTGAATCTCGTCAATACAAAGACGCGGAAAGATGTCACATTGTTTATAGTCTTTCAAAAGATCTCGGTCTACCAGGTTTCAGAGTCGGAACAATTTATTCCTACAACGATAAAGTTGTTACAACAGCACGAAGAATGTCGAGTTTTACCTTAATATCTTCACAAACACAACATCTTTTAGCATCAATGTTGTCAGATGAAAGTTTCACTGATAATTACATCAAGGTCAATAGAGAAAGATTAAGGAAAAGATATGAAATGATCATTGAAGGTTTGAAAAGTGCTGGAATTGAATGCTTGAAAGGTAATGCAGGGTTGTTTTGTTGGATGAATATGAGTCCAATGTTGGAAAGTAATACAAGAGCAGGTGAATTGAAGCTTTGGAATGAGATTTTGAATGAAGTTAAGCTTAATATTTCACCAGGTTGTTCTTGTCATTGTTCCGAACCCGGTTGGTTTAGGGTTTGTTTTGCAAATATGAGTGAAGAAACCCTTCAACTTGCACTCAAAAGAATACGTGATTTCGTGAATAACAAGGACAGAAAGGATACAGGGATATAA
Protein sequence

>MS.gene064035.t1

MGIEIEQEHPCVELSNIATSETHGENSPYFAGWKAYDENPYHEITNPSGVIQMGLAENQVSFDLLEKYLEEHSEASTWGKGGSSFRDNALFQDYHGLKSFRKAMASFMEKIRGNKAKFDYERIVLTAGATAANELLTFILANPGDALLVPTPYYPGFDRDLRWRTGVNIVPIHCDSSSNFQITLEALETAYKNAESMNMKVKAVLITNPSNPLGISIQRSVLEDILNFVTRKNIHLVSDEIYSGSVFSSHEFISIAEILESRQYKDAERCHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQHLLASMLSDESFTDNYIKVNRERLRKRYEMIIEGLKSAGIECLKGNAGLFCWMNMSPMLESNTRAGELKLWNEILNEVKLNISPGCSCHCSEPGWFRVCFANMSEETLQLALKRIRDFVNNKDRKDTGI