AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030294

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030294.t1 MTR_6g091760 98.649 444 6 0 1 444 1 444 0.0 918
MS.gene030294.t1 MTR_8g101750 81.693 437 72 2 1 437 1 429 0.0 756
MS.gene030294.t1 MTR_8g101820 75.973 437 84 3 1 437 1 416 0.0 696
MS.gene030294.t1 MTR_5g015020 61.111 432 159 5 14 436 4 435 0.0 558
MS.gene030294.t1 MTR_4g097540 60.325 431 161 4 14 434 4 434 0.0 552
MS.gene030294.t1 MTR_3g103550 58.645 428 172 2 14 436 2 429 0.0 549
MS.gene030294.t1 MTR_8g028600 56.308 428 185 2 14 440 11 437 0.0 525
MS.gene030294.t1 MTR_8g098930 55.530 443 190 5 1 438 1 441 0.0 521
MS.gene030294.t1 MTR_7g079080 56.279 430 187 1 14 442 11 440 0.0 520
MS.gene030294.t1 MTR_6g463260 44.213 432 238 2 12 441 102 532 4.67e-146 427
MS.gene030294.t1 MTR_7g079080 55.522 335 149 0 108 442 1 335 9.93e-140 405
MS.gene030294.t1 MTR_5g011400 44.010 409 221 3 26 430 84 488 1.44e-131 389
MS.gene030294.t1 MTR_2g090730 57.692 78 29 1 81 158 27 100 4.02e-22 94.4
MS.gene030294.t1 MTR_5g033230 25.301 332 222 14 73 382 83 410 7.94e-18 85.9
MS.gene030294.t1 MTR_5g033230 25.301 332 222 14 73 382 83 410 8.69e-18 85.9
MS.gene030294.t1 MTR_8g023140 23.181 371 257 14 86 433 149 514 9.18e-18 85.9
MS.gene030294.t1 MTR_4g011820 22.917 336 222 12 105 431 75 382 8.58e-15 76.3
MS.gene030294.t1 MTR_8g061360 21.168 411 276 15 46 440 38 416 1.28e-11 66.6
MS.gene030294.t1 MTR_7g106830 19.637 331 243 10 114 436 151 466 4.28e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030294.t1 AT4G26200 75.406 431 103 3 12 439 16 446 0.0 664
MS.gene030294.t1 AT4G37770 60.563 426 164 2 14 435 4 429 0.0 557
MS.gene030294.t1 AT4G08040 60.798 426 166 1 14 438 2 427 0.0 554
MS.gene030294.t1 AT5G65800 58.837 430 173 2 13 438 3 432 0.0 545
MS.gene030294.t1 AT3G49700 58.333 432 176 2 13 440 3 434 0.0 542
MS.gene030294.t1 AT2G22810 58.333 432 175 3 12 438 2 433 0.0 538
MS.gene030294.t1 AT3G61510 58.531 422 171 2 14 434 11 429 0.0 536
MS.gene030294.t1 AT4G11280 58.670 421 173 1 14 433 15 435 0.0 530
MS.gene030294.t1 AT1G01480 54.524 431 192 3 14 440 12 442 1.83e-178 508
MS.gene030294.t1 AT1G01480 53.571 336 153 2 108 440 1 336 1.51e-136 397
MS.gene030294.t1 AT5G51690 43.396 424 237 2 12 433 67 489 1.94e-136 401
MS.gene030294.t1 AT1G62960 42.787 409 229 3 24 431 143 547 1.43e-127 380
MS.gene030294.t1 AT5G51690 46.064 343 184 1 89 431 23 364 3.14e-121 358
MS.gene030294.t1 AT1G23310 26.259 278 185 10 91 352 103 376 6.81e-20 92.0
MS.gene030294.t1 AT1G23310 26.259 278 185 10 91 352 103 376 1.01e-19 91.7
MS.gene030294.t1 AT1G72330 24.595 370 253 14 86 433 165 530 1.75e-19 91.3
MS.gene030294.t1 AT1G70580 25.540 278 187 10 91 352 103 376 5.29e-19 89.7
MS.gene030294.t1 AT1G70580 25.540 278 187 10 91 352 103 376 5.29e-19 89.7
MS.gene030294.t1 AT1G70580 25.540 278 187 10 91 352 103 376 5.29e-19 89.7
MS.gene030294.t1 AT1G70580 25.540 278 187 10 91 352 103 376 5.29e-19 89.7
MS.gene030294.t1 AT1G72330 23.760 383 253 14 86 433 165 543 1.21e-17 85.9
MS.gene030294.t1 AT1G72330 25.191 262 182 8 86 336 165 423 3.52e-17 84.0
MS.gene030294.t1 AT1G80360 23.678 397 252 16 43 431 28 381 5.60e-17 82.8
MS.gene030294.t1 AT1G80360 23.678 397 252 16 43 431 28 381 5.60e-17 82.8
MS.gene030294.t1 AT1G80360 23.678 397 252 16 43 431 28 381 5.60e-17 82.8
MS.gene030294.t1 AT1G80360 23.678 397 252 16 43 431 28 381 5.60e-17 82.8
MS.gene030294.t1 AT1G17290 23.490 298 208 11 86 367 168 461 8.79e-17 83.2
MS.gene030294.t1 AT1G77670 24.458 323 214 11 121 437 141 439 1.59e-14 75.9
MS.gene030294.t1 AT4G23600 23.056 360 236 14 96 440 78 411 5.66e-14 73.9
MS.gene030294.t1 AT5G36160 22.096 353 234 13 96 433 85 411 1.31e-13 72.8
MS.gene030294.t1 AT2G20610 22.284 359 240 14 96 440 109 442 2.53e-12 68.9
MS.gene030294.t1 AT2G20610 23.810 273 177 10 96 358 109 360 9.27e-12 67.0
MS.gene030294.t1 AT4G23600 23.263 331 215 13 125 440 1 307 9.35e-12 66.2
MS.gene030294.t1 AT4G23600 23.264 288 188 10 96 370 78 345 2.93e-11 65.5

Find 78 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCCGAACCCGGTTGGTTT+AGG 0.229798 6.2:-88854170 MS.gene030294:CDS
TTCCGAACCCGGTTGGTTTA+GGG 0.281999 6.2:-88854169 MS.gene030294:CDS
TTGTGTTTGTGAAGATATTA+AGG 0.307747 6.2:+88854461 None:intergenic
TGTAACAACTTTATCGTTGT+AGG 0.335375 6.2:+88854509 None:intergenic
ATTTCTTACCCAGGATAGTA+TGG 0.344459 6.2:+88855356 None:intergenic
CGCTGAATCGATATGCCTAA+TGG 0.346514 6.2:+88854750 None:intergenic
AGGTCAATAGAGAAAGATTA+AGG 0.358277 6.2:-88854386 MS.gene030294:CDS
GCTTTCCATCCAGCAAAGTA+TGG 0.363582 6.2:+88855937 None:intergenic
CATGAAATAACTAACCCTTC+TGG 0.371377 6.2:-88855895 MS.gene030294:CDS
GAAAATTCTCCATACTTTGC+TGG 0.375504 6.2:-88855946 MS.gene030294:CDS
AAAAGCAATGGCAAGTTTCA+TGG 0.377867 6.2:-88855507 MS.gene030294:CDS
AACCCTAAACCAACCGGGTT+CGG 0.381536 6.2:+88854167 None:intergenic
GGGTTAGTTATTTCATGATA+AGG 0.383889 6.2:+88855901 None:intergenic
GATATGCCTAATGGATTTGA+TGG 0.385429 6.2:+88854759 None:intergenic
GGTTAGTTATTTCATGATAA+GGG 0.406672 6.2:+88855902 None:intergenic
GAGCAGGTGAATTGAAGCTT+TGG 0.427210 6.2:-88854248 MS.gene030294:CDS
ATTGAAGGTTTGAAAAGTGC+TGG 0.436332 6.2:-88854345 MS.gene030294:CDS
AAAACAAACCCTAAACCAAC+CGG 0.440582 6.2:+88854161 None:intergenic
ACTTTCATCCTTGCAAATCC+AGG 0.440957 6.2:-88855401 MS.gene030294:CDS
GATTTGATAGAGATTTAAGA+TGG 0.441356 6.2:-88854917 MS.gene030294:CDS
AGATATGAAATGATCATTGA+AGG 0.446464 6.2:-88854360 MS.gene030294:CDS
GCATTATTTCAAGACTATCA+TGG 0.449699 6.2:-88855545 MS.gene030294:CDS
TCTTGTCATTGTTCCGAACC+CGG 0.453246 6.2:-88854180 MS.gene030294:CDS
CCCTTCTGGAGTTATACAAA+TGG 0.454742 6.2:-88855881 MS.gene030294:CDS
AGAGATTTAAGATGGAGAAC+TGG 0.456614 6.2:-88854909 MS.gene030294:CDS
GTTCCAACACCATACTATCC+TGG 0.457037 6.2:-88855365 MS.gene030294:CDS
AACAAGGACAGAAAGGATAC+AGG 0.467234 6.2:-88854078 MS.gene030294:CDS
TGGAGTTATACAAATGGGCT+TGG 0.477948 6.2:-88855875 MS.gene030294:CDS
TTTGAGCTATCACAATGGAT+TGG 0.480408 6.2:+88854873 None:intergenic
GATGAAAGTCAAGAGTTCAT+TGG 0.480725 6.2:+88855415 None:intergenic
CTTGTATTACTTTCCAACAT+TGG 0.485720 6.2:+88854270 None:intergenic
GAGGCATCAACATGGGGAAA+AGG 0.488094 6.2:-88855590 MS.gene030294:CDS
TATAGTCTTTCAAAAGATCT+CGG 0.492463 6.2:-88854564 MS.gene030294:CDS
CCTTCTGGAGTTATACAAAT+GGG 0.492469 6.2:-88855880 MS.gene030294:CDS
ATTCTCCATACTTTGCTGGA+TGG 0.499110 6.2:-88855942 MS.gene030294:CDS
GTCATTGTTCCGAACCCGGT+TGG 0.507280 6.2:-88854176 MS.gene030294:CDS
CATGAATAACAAGGACAGAA+AGG 0.509122 6.2:-88854085 MS.gene030294:CDS
TTGGAAAGTAATACAAGAGC+AGG 0.510180 6.2:-88854264 MS.gene030294:CDS
GAATGCTTGAAAGGTAATGC+AGG 0.512496 6.2:-88854318 MS.gene030294:CDS
GAAAGAATTGTCCTCACTGC+TGG 0.516086 6.2:-88855449 MS.gene030294:CDS
TCAAAAGATCTCGGTCTACC+AGG 0.516620 6.2:-88854555 MS.gene030294:CDS
TACCCAGGATAGTATGGTGT+TGG 0.517904 6.2:+88855362 None:intergenic
CCCATTTGTATAACTCCAGA+AGG 0.531454 6.2:+88855880 None:intergenic
TTCCAACACCATACTATCCT+GGG 0.532294 6.2:-88855364 MS.gene030294:intron
ATTGCAACTTCTGAAACTCA+TGG 0.536344 6.2:-88855970 MS.gene030294:CDS
GATGAATATGAGTCCAATGT+TGG 0.544594 6.2:-88854283 MS.gene030294:CDS
TTTCACTGATAATTACATCA+AGG 0.546541 6.2:-88854406 MS.gene030294:CDS
GCCTAATGGATTTGATGGGT+TGG 0.548657 6.2:+88854764 None:intergenic
GGAACAAGTAAAGCATCTCC+TGG 0.548786 6.2:+88855383 None:intergenic
TTGACGAGATTCAAGAATCT+CGG 0.556243 6.2:+88854617 None:intergenic
TGTCTCAGACGAAATCTACT+CGG 0.564955 6.2:-88854676 MS.gene030294:CDS
GTTAAGCTTAATATTTCACC+AGG 0.577298 6.2:-88854207 MS.gene030294:CDS
TAAATCATTCAGAAAAGCAA+TGG 0.582708 6.2:-88855519 MS.gene030294:CDS
GCTGGAATTGAATGCTTGAA+AGG 0.592728 6.2:-88854327 MS.gene030294:CDS
AACACTCAGAGGCATCAACA+TGG 0.595204 6.2:-88855598 MS.gene030294:CDS
ACCAACCCATCAAATCCATT+AGG 0.597602 6.2:-88854765 MS.gene030294:CDS
ATTGTTCCGACTCTGAAACC+TGG 0.601886 6.2:+88854537 None:intergenic
ACACTCAGAGGCATCAACAT+GGG 0.602352 6.2:-88855597 MS.gene030294:CDS
GTCTCAGACGAAATCTACTC+GGG 0.602761 6.2:-88854675 MS.gene030294:CDS
GGTCTACCAGGTTTCAGAGT+CGG 0.613246 6.2:-88854543 MS.gene030294:CDS
GCATCAACATGGGGAAAAGG+TGG 0.616595 6.2:-88855587 MS.gene030294:CDS
ACAAGGACAGAAAGGATACA+GGG 0.626149 6.2:-88854077 MS.gene030294:CDS
CACTCAGAGGCATCAACATG+GGG 0.626693 6.2:-88855596 MS.gene030294:CDS
AGTAGATTTCGTCTGAGACA+AGG 0.630503 6.2:+88854679 None:intergenic
AAGCATCTCCTGGATTTGCA+AGG 0.633214 6.2:+88855393 None:intergenic
CCATTTGTATAACTCCAGAA+GGG 0.643005 6.2:+88855881 None:intergenic
ATATGCCTAATGGATTTGAT+GGG 0.644532 6.2:+88854760 None:intergenic
GATTCAGCGTTCAGTTCTCG+AGG 0.650635 6.2:-88854736 MS.gene030294:CDS
AATTGTTTGAGCTATCACAA+TGG 0.655921 6.2:+88854868 None:intergenic
ATATTTGAAAGTTCAACACA+AGG 0.665047 6.2:+88855991 None:intergenic
ACGTGATTTCATGAATAACA+AGG 0.666747 6.2:-88854094 MS.gene030294:CDS
AAACAAACCCTAAACCAACC+GGG 0.670128 6.2:+88854162 None:intergenic
TATTTGAAAGTTCAACACAA+GGG 0.671806 6.2:+88855992 None:intergenic
GAACAATGACAAGAACAACC+TGG 0.683485 6.2:+88854189 None:intergenic
CAGCAGTAGCACCAGCAGTG+AGG 0.696586 6.2:+88855438 None:intergenic
ATACTTGGAAGAACACTCAG+AGG 0.699650 6.2:-88855609 MS.gene030294:CDS
AATGCTTGAAAGGTAATGCA+GGG 0.724648 6.2:-88854317 MS.gene030294:CDS
ATCTCGTCAATACAAAGACG+CGG 0.725438 6.2:-88854604 MS.gene030294:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATAAAAATTTTGGTAT+AGG + chr6.2:88854824-88854843 None:intergenic 10.0%
!!! TATTTCTAAATTCGAAAATA+TGG - chr6.2:88854999-88855018 MS.gene030294:intron 15.0%
!!! TATTTTGTTTGAAATTCTTT+AGG - chr6.2:88854435-88854454 MS.gene030294:CDS 15.0%
!! GACAATATAAGTACAATAAT+TGG - chr6.2:88855113-88855132 MS.gene030294:intron 20.0%
!! TCTCTTACCATAATTAATAA+TGG - chr6.2:88854792-88854811 MS.gene030294:CDS 20.0%
!! TGATTTACTTGAAAAATACT+TGG - chr6.2:88854465-88854484 MS.gene030294:CDS 20.0%
!!! ATAAAAATTTTGGTATAGGA+AGG + chr6.2:88854820-88854839 None:intergenic 20.0%
!!! GATATATGTACTTTAAAGAA+AGG - chr6.2:88854346-88854365 MS.gene030294:CDS 20.0%
!!! TATTTGCTTAAATGCATTTT+TGG - chr6.2:88854940-88854959 MS.gene030294:intron 20.0%
! AGATATGAAATGATCATTGA+AGG - chr6.2:88855729-88855748 MS.gene030294:intron 25.0%
! AGTTTCATGGAAAAAATTAG+AGG - chr6.2:88854595-88854614 MS.gene030294:CDS 25.0%
! ATATTTGAAAGTTCAACACA+AGG + chr6.2:88854101-88854120 None:intergenic 25.0%
! GAAGGTTCCATTATTAATTA+TGG + chr6.2:88854802-88854821 None:intergenic 25.0%
! GATTTGATAGAGATTTAAGA+TGG - chr6.2:88855172-88855191 MS.gene030294:intron 25.0%
! TAAATCATTCAGAAAAGCAA+TGG - chr6.2:88854570-88854589 MS.gene030294:CDS 25.0%
! TATAGTCTTTCAAAAGATCT+CGG - chr6.2:88855525-88855544 MS.gene030294:CDS 25.0%
! TATTTGAAAGTTCAACACAA+GGG + chr6.2:88854100-88854119 None:intergenic 25.0%
! TTGTGTTTGTGAAGATATTA+AGG + chr6.2:88855631-88855650 None:intergenic 25.0%
! TTTCACTGATAATTACATCA+AGG - chr6.2:88855683-88855702 MS.gene030294:intron 25.0%
!! GGTTAGTTATTTCATGATAA+GGG + chr6.2:88854190-88854209 None:intergenic 25.0%
!!! TCAAACTTTTTTTTTTCCCT+TGG - chr6.2:88854857-88854876 MS.gene030294:CDS 25.0%
AAAGAGATAATTTCTTACCC+AGG + chr6.2:88854745-88854764 None:intergenic 30.0%
AATTGTTTGAGCTATCACAA+TGG + chr6.2:88855224-88855243 None:intergenic 30.0%
ACGTGATTTCATGAATAACA+AGG - chr6.2:88855995-88856014 MS.gene030294:CDS 30.0%
AGGTCAATAGAGAAAGATTA+AGG - chr6.2:88855703-88855722 MS.gene030294:intron 30.0%
CTTGTATTACTTTCCAACAT+TGG + chr6.2:88855822-88855841 None:intergenic 30.0%
GCATTATTTCAAGACTATCA+TGG - chr6.2:88854544-88854563 MS.gene030294:CDS 30.0%
GTTAAGCTTAATATTTCACC+AGG - chr6.2:88855882-88855901 MS.gene030294:CDS 30.0%
TGTAACAACTTTATCGTTGT+AGG + chr6.2:88855583-88855602 None:intergenic 30.0%
! ATGATAAGGGTTTTCATCAT+AGG + chr6.2:88854177-88854196 None:intergenic 30.0%
! TGCTTTTACTTTCATGTTCA+TGG + chr6.2:88855295-88855314 None:intergenic 30.0%
!! ATATGCCTAATGGATTTGAT+GGG + chr6.2:88855332-88855351 None:intergenic 30.0%
!! GGGTTAGTTATTTCATGATA+AGG + chr6.2:88854191-88854210 None:intergenic 30.0%
AAAACAAACCCTAAACCAAC+CGG + chr6.2:88855931-88855950 None:intergenic 35.0%
AAAAGCAATGGCAAGTTTCA+TGG - chr6.2:88854582-88854601 MS.gene030294:CDS 35.0%
AATGCTTGAAAGGTAATGCA+GGG - chr6.2:88855772-88855791 MS.gene030294:intron 35.0%
ATTTCTTACCCAGGATAGTA+TGG + chr6.2:88854736-88854755 None:intergenic 35.0%
CATGAAATAACTAACCCTTC+TGG - chr6.2:88854194-88854213 MS.gene030294:CDS 35.0%
CATGAATAACAAGGACAGAA+AGG - chr6.2:88856004-88856023 MS.gene030294:CDS 35.0%
CCATTTGTATAACTCCAGAA+GGG + chr6.2:88854211-88854230 None:intergenic 35.0%
GAAAATTCTCCATACTTTGC+TGG - chr6.2:88854143-88854162 MS.gene030294:CDS 35.0%
GATGAAAGTCAAGAGTTCAT+TGG + chr6.2:88854677-88854696 None:intergenic 35.0%
GATGAATATGAGTCCAATGT+TGG - chr6.2:88855806-88855825 MS.gene030294:intron 35.0%
TAAATGCTTGCAAGTTCCAA+GGG + chr6.2:88854876-88854895 None:intergenic 35.0%
TTAAATGCTTGCAAGTTCCA+AGG + chr6.2:88854877-88854896 None:intergenic 35.0%
TTGACGAGATTCAAGAATCT+CGG + chr6.2:88855475-88855494 None:intergenic 35.0%
TTGGAAAGTAATACAAGAGC+AGG - chr6.2:88855825-88855844 MS.gene030294:intron 35.0%
TTTGAGCTATCACAATGGAT+TGG + chr6.2:88855219-88855238 None:intergenic 35.0%
TTTGCTTATATCGTTGACAC+AGG + chr6.2:88854291-88854310 None:intergenic 35.0%
! AGAGATTTAAGATGGAGAAC+TGG - chr6.2:88855180-88855199 MS.gene030294:intron 35.0%
! ATTGAAGGTTTGAAAAGTGC+TGG - chr6.2:88855744-88855763 MS.gene030294:intron 35.0%
!! ATTGCAACTTCTGAAACTCA+TGG - chr6.2:88854119-88854138 MS.gene030294:CDS 35.0%
!! CCTTCTGGAGTTATACAAAT+GGG - chr6.2:88854209-88854228 MS.gene030294:CDS 35.0%
!! GATATGCCTAATGGATTTGA+TGG + chr6.2:88855333-88855352 None:intergenic 35.0%
!! TCTTTTGAGTGCAAGTTGAA+GGG + chr6.2:88855973-88855992 None:intergenic 35.0%
!! TTCTTTTGAGTGCAAGTTGA+AGG + chr6.2:88855974-88855993 None:intergenic 35.0%
AAACAAACCCTAAACCAACC+GGG + chr6.2:88855930-88855949 None:intergenic 40.0%
AACAAGGACAGAAAGGATAC+AGG - chr6.2:88856011-88856030 MS.gene030294:CDS 40.0%
ACAAGGACAGAAAGGATACA+GGG - chr6.2:88856012-88856031 MS.gene030294:CDS 40.0%
ACCAACCCATCAAATCCATT+AGG - chr6.2:88855324-88855343 MS.gene030294:intron 40.0%
ACTTTCATCCTTGCAAATCC+AGG - chr6.2:88854688-88854707 MS.gene030294:CDS 40.0%
ATACTTGGAAGAACACTCAG+AGG - chr6.2:88854480-88854499 MS.gene030294:CDS 40.0%
ATCTCGTCAATACAAAGACG+CGG - chr6.2:88855485-88855504 MS.gene030294:CDS 40.0%
ATTCTCCATACTTTGCTGGA+TGG - chr6.2:88854147-88854166 MS.gene030294:CDS 40.0%
CCCATTTGTATAACTCCAGA+AGG + chr6.2:88854212-88854231 None:intergenic 40.0%
GAACAATGACAAGAACAACC+TGG + chr6.2:88855903-88855922 None:intergenic 40.0%
GAATGCTTGAAAGGTAATGC+AGG - chr6.2:88855771-88855790 MS.gene030294:intron 40.0%
GCTGGAATTGAATGCTTGAA+AGG - chr6.2:88855762-88855781 MS.gene030294:intron 40.0%
TGTCTCAGACGAAATCTACT+CGG - chr6.2:88855413-88855432 MS.gene030294:CDS 40.0%
TTCCAACACCATACTATCCT+GGG - chr6.2:88854725-88854744 MS.gene030294:CDS 40.0%
! AGTAGATTTCGTCTGAGACA+AGG + chr6.2:88855413-88855432 None:intergenic 40.0%
! TGGAGTTATACAAATGGGCT+TGG - chr6.2:88854214-88854233 MS.gene030294:CDS 40.0%
!! CCCTTCTGGAGTTATACAAA+TGG - chr6.2:88854208-88854227 MS.gene030294:CDS 40.0%
!! GTAATGCAGGGTTGTTTTGT+TGG - chr6.2:88855784-88855803 MS.gene030294:intron 40.0%
AAGCATCTCCTGGATTTGCA+AGG + chr6.2:88854699-88854718 None:intergenic 45.0%
CGCTGAATCGATATGCCTAA+TGG + chr6.2:88855342-88855361 None:intergenic 45.0%
GAAAGAATTGTCCTCACTGC+TGG - chr6.2:88854640-88854659 MS.gene030294:CDS 45.0%
GAGCAGGTGAATTGAAGCTT+TGG - chr6.2:88855841-88855860 MS.gene030294:intron 45.0%
GCTTTCCATCCAGCAAAGTA+TGG + chr6.2:88854155-88854174 None:intergenic 45.0%
GTCTCAGACGAAATCTACTC+GGG - chr6.2:88855414-88855433 MS.gene030294:CDS 45.0%
GTTCCAACACCATACTATCC+TGG - chr6.2:88854724-88854743 MS.gene030294:CDS 45.0%
TACCCAGGATAGTATGGTGT+TGG + chr6.2:88854730-88854749 None:intergenic 45.0%
TCAAAAGATCTCGGTCTACC+AGG - chr6.2:88855534-88855553 MS.gene030294:CDS 45.0%
TCTTGTCATTGTTCCGAACC+CGG - chr6.2:88855909-88855928 MS.gene030294:CDS 45.0%
! GGAACAAGTAAAGCATCTCC+TGG + chr6.2:88854709-88854728 None:intergenic 45.0%
!! AACACTCAGAGGCATCAACA+TGG - chr6.2:88854491-88854510 MS.gene030294:CDS 45.0%
!! ACACTCAGAGGCATCAACAT+GGG - chr6.2:88854492-88854511 MS.gene030294:CDS 45.0%
!! ATTGTTCCGACTCTGAAACC+TGG + chr6.2:88855555-88855574 None:intergenic 45.0%
!! GCCTAATGGATTTGATGGGT+TGG + chr6.2:88855328-88855347 None:intergenic 45.0%
!!! AAACTATATTATAAAAATTT+TGG + chr6.2:88854830-88854849 None:intergenic 5.0%
AACCCTAAACCAACCGGGTT+CGG + chr6.2:88855925-88855944 None:intergenic 50.0%
GATTCAGCGTTCAGTTCTCG+AGG - chr6.2:88855353-88855372 MS.gene030294:intron 50.0%
GCATCAACATGGGGAAAAGG+TGG - chr6.2:88854502-88854521 MS.gene030294:CDS 50.0%
GGTCTACCAGGTTTCAGAGT+CGG - chr6.2:88855546-88855565 MS.gene030294:CDS 50.0%
! GAGGCATCAACATGGGGAAA+AGG - chr6.2:88854499-88854518 MS.gene030294:CDS 50.0%
!! CACTCAGAGGCATCAACATG+GGG - chr6.2:88854493-88854512 MS.gene030294:CDS 50.0%
!! TTCCGAACCCGGTTGGTTTA+GGG - chr6.2:88855920-88855939 MS.gene030294:CDS 50.0%
GTCATTGTTCCGAACCCGGT+TGG - chr6.2:88855913-88855932 MS.gene030294:CDS 55.0%
!! GTTCCGAACCCGGTTGGTTT+AGG - chr6.2:88855919-88855938 MS.gene030294:CDS 55.0%
CAGCAGTAGCACCAGCAGTG+AGG + chr6.2:88854654-88854673 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 88854071 88856040 88854071 ID=MS.gene030294
chr6.2 mRNA 88854071 88856040 88854071 ID=MS.gene030294.t1;Parent=MS.gene030294
chr6.2 exon 88855864 88856040 88855864 ID=MS.gene030294.t1.exon1;Parent=MS.gene030294.t1
chr6.2 CDS 88855864 88856040 88855864 ID=cds.MS.gene030294.t1;Parent=MS.gene030294.t1
chr6.2 exon 88855365 88855654 88855365 ID=MS.gene030294.t1.exon2;Parent=MS.gene030294.t1
chr6.2 CDS 88855365 88855654 88855365 ID=cds.MS.gene030294.t1;Parent=MS.gene030294.t1
chr6.2 exon 88854071 88854938 88854071 ID=MS.gene030294.t1.exon3;Parent=MS.gene030294.t1
chr6.2 CDS 88854071 88854938 88854071 ID=cds.MS.gene030294.t1;Parent=MS.gene030294.t1
Gene Sequence

>MS.gene030294

ATGGGTATTGAGATTGAACAAGAACACCCTTGTGTTGAACTTTCAAATATTGCAACTTCTGAAACTCATGGAGAAAATTCTCCATACTTTGCTGGATGGAAAGCCTATGATGAAAACCCTTATCATGAAATAACTAACCCTTCTGGAGTTATACAAATGGGCTTGGCAGAAAATCAAGTAAGTGTATAAATATATCGAAGACGTTTTCAGTGTCTGACCTGTGTCAACGATATAAGCAAAAAAAAAGTACATGTATCTGATATAAATTTTGATCAGATATATGTACTTTAAAGAAAGGAAAAAAAATGTGACACTTAATTATTTTCATTAATTTCTAAGCTTATATTTAACTAGTTGACTAATATATTTTGTTTGAAATTCTTTAGGTATCATTTGATTTACTTGAAAAATACTTGGAAGAACACTCAGAGGCATCAACATGGGGAAAAGGTGGTTCAAGTTTTAGAGATAATGCATTATTTCAAGACTATCATGGACTTAAATCATTCAGAAAAGCAATGGCAAGTTTCATGGAAAAAATTAGAGGAAATAAAACAAAATTTGATTATGAAAGAATTGTCCTCACTGCTGGTGCTACTGCTGCCAATGAACTCTTGACTTTCATCCTTGCAAATCCAGGAGATGCTTTACTTGTTCCAACACCATACTATCCTGGGTAAGAAATTATCTCTTTTCACACTTCAATACATTTTTATATTTTTCTCTTACCATAATTAATAATGGAACCTTCCTATACCAAAATTTTTATAATATAGTTTCAAAATGTCAAACTTTTTTTTTTCCCTTGGAACTTGCAAGCATTTAACTATTTGCTTTATGAGTATAATAAAAATATATTCTATATAATATATTTGCTTAAATGCATTTTTGGTCGTCTATTTTTACTAATTCATGATTTTAGCTCGTGTATTTCTAAATTCGAAAATATGGTCTTCATGTTTTCAAATTTAATGAGCACTAAAATCGTGAATCTATTAAAAAAATGATCAAACGAGTAATCATCTAAGCATAAAATTCGCGCGACAATATAAGTACAATAATTGGAAAATTAAACTAATGTATATATTTTTTGATTTTGCAGATTTGATAGAGATTTAAGATGGAGAACTGGTGTAAACATAGTTCCAATCCATTGTGATAGCTCAAACAATTTTCAAATCACACTTGAAGCATTAGAAACTGCATACAAAAATGCAGAATCCATGAACATGAAAGTAAAAGCAGTACTTATCACCAACCCATCAAATCCATTAGGCATATCGATTCAGCGTTCAGTTCTCGAGGACATTCTCAATTTCGTGACTCGCAAGAACATACACCTTGTCTCAGACGAAATCTACTCGGGCTCAGTTTTCTCTTCACATGAATTCATAAGCATAGCCGAGATTCTTGAATCTCGTCAATACAAAGACGCGGAAAGATGTCACATTGTTTATAGTCTTTCAAAAGATCTCGGTCTACCAGGTTTCAGAGTCGGAACAATTTATTCCTACAACGATAAAGTTGTTACAACAGCACGAAGAATGTCGAGTTTTACCTTAATATCTTCACAAACACAACATCTTTTAGCATCAATGTTGTCAGATGAAAGTTTCACTGATAATTACATCAAGGTCAATAGAGAAAGATTAAGGAAAAGATATGAAATGATCATTGAAGGTTTGAAAAGTGCTGGAATTGAATGCTTGAAAGGTAATGCAGGGTTGTTTTGTTGGATGAATATGAGTCCAATGTTGGAAAGTAATACAAGAGCAGGTGAATTGAAGCTTTGGAATGAGATTTTGAATGAAGTTAAGCTTAATATTTCACCAGGTTGTTCTTGTCATTGTTCCGAACCCGGTTGGTTTAGGGTTTGTTTTGCAAATATGAGTGAAGAAACCCTTCAACTTGCACTCAAAAGAATACGTGATTTCATGAATAACAAGGACAGAAAGGATACAGGGATATAA
Protein sequence

>MS.gene030294.t1

MGIEIEQEHPCVELSNIATSETHGENSPYFAGWKAYDENPYHEITNPSGVIQMGLAENQVSFDLLEKYLEEHSEASTWGKGGSSFRDNALFQDYHGLKSFRKAMASFMEKIRGNKTKFDYERIVLTAGATAANELLTFILANPGDALLVPTPYYPGFDRDLRWRTGVNIVPIHCDSSNNFQITLEALETAYKNAESMNMKVKAVLITNPSNPLGISIQRSVLEDILNFVTRKNIHLVSDEIYSGSVFSSHEFISIAEILESRQYKDAERCHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQHLLASMLSDESFTDNYIKVNRERLRKRYEMIIEGLKSAGIECLKGNAGLFCWMNMSPMLESNTRAGELKLWNEILNEVKLNISPGCSCHCSEPGWFRVCFANMSEETLQLALKRIRDFMNNKDRKDTGI