AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049021

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049021.t1 MTR_8g101750 95.402 435 20 0 1 435 1 435 0.0 874
MS.gene049021.t1 MTR_8g101820 89.195 435 34 2 1 435 1 422 0.0 807
MS.gene049021.t1 MTR_6g091760 81.007 437 75 2 1 429 1 437 0.0 754
MS.gene049021.t1 MTR_5g015020 58.661 433 162 6 12 428 4 435 0.0 538
MS.gene049021.t1 MTR_4g097540 57.666 437 167 5 12 431 4 439 0.0 536
MS.gene049021.t1 MTR_3g103550 56.744 430 175 3 12 430 2 431 0.0 528
MS.gene049021.t1 MTR_8g098930 56.706 425 175 2 12 427 12 436 0.0 523
MS.gene049021.t1 MTR_8g028600 55.478 429 183 2 12 433 11 438 0.0 520
MS.gene049021.t1 MTR_7g079080 55.944 429 182 1 12 433 11 439 0.0 518
MS.gene049021.t1 MTR_6g463260 44.496 427 228 2 10 428 102 527 4.12e-144 422
MS.gene049021.t1 MTR_7g079080 55.689 334 148 0 100 433 1 334 4.68e-141 408
MS.gene049021.t1 MTR_5g011400 43.489 407 220 3 24 422 84 488 9.46e-130 384
MS.gene049021.t1 MTR_2g090730 56.757 74 28 1 77 150 31 100 2.99e-21 91.7
MS.gene049021.t1 MTR_5g033230 24.272 309 213 11 83 373 103 408 6.19e-17 83.2
MS.gene049021.t1 MTR_5g033230 24.272 309 213 11 83 373 103 408 7.67e-17 82.8
MS.gene049021.t1 MTR_8g091280 23.174 397 262 15 46 426 97 466 9.09e-17 82.8
MS.gene049021.t1 MTR_4g011820 22.671 322 205 11 115 423 92 382 1.41e-15 78.6
MS.gene049021.t1 MTR_2g090615 26.087 276 167 9 88 350 86 337 2.25e-14 75.1
MS.gene049021.t1 MTR_8g023140 22.372 371 260 14 78 425 149 514 2.68e-14 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049021.t1 AT4G26200 75.291 429 97 3 10 429 16 444 0.0 662
MS.gene049021.t1 AT4G37770 59.122 433 167 2 12 434 4 436 0.0 552
MS.gene049021.t1 AT4G08040 57.674 430 175 1 12 434 2 431 0.0 545
MS.gene049021.t1 AT5G65800 57.944 428 170 3 11 428 3 430 0.0 532
MS.gene049021.t1 AT3G49700 58.042 429 168 3 11 428 3 430 0.0 527
MS.gene049021.t1 AT2G22810 55.734 436 182 3 10 434 2 437 0.0 524
MS.gene049021.t1 AT3G61510 56.161 422 175 2 12 426 11 429 0.0 523
MS.gene049021.t1 AT4G11280 55.916 431 183 1 4 427 7 437 0.0 518
MS.gene049021.t1 AT1G01480 51.716 437 201 3 1 427 1 437 5.36e-172 491
MS.gene049021.t1 AT5G51690 43.794 427 231 3 10 428 67 492 7.21e-138 404
MS.gene049021.t1 AT1G01480 52.568 331 154 2 100 427 1 331 7.54e-134 390
MS.gene049021.t1 AT1G62960 43.457 405 226 3 22 423 143 547 4.08e-128 382
MS.gene049021.t1 AT5G51690 46.552 348 185 1 81 428 23 369 3.02e-123 363
MS.gene049021.t1 AT1G23310 25.993 277 187 9 83 344 103 376 1.89e-18 87.4
MS.gene049021.t1 AT1G23310 25.993 277 187 9 83 344 103 376 2.56e-18 87.4
MS.gene049021.t1 AT1G72330 22.955 379 264 14 73 428 160 533 1.76e-17 85.1
MS.gene049021.t1 AT4G23600 26.243 362 224 14 88 433 78 412 2.01e-17 84.3
MS.gene049021.t1 AT5G36160 24.444 360 227 13 83 425 80 411 2.94e-17 84.0
MS.gene049021.t1 AT1G70580 25.271 277 189 10 83 344 103 376 5.96e-17 83.2
MS.gene049021.t1 AT1G70580 25.271 277 189 10 83 344 103 376 5.96e-17 83.2
MS.gene049021.t1 AT1G70580 25.271 277 189 10 83 344 103 376 5.96e-17 83.2
MS.gene049021.t1 AT1G70580 25.271 277 189 10 83 344 103 376 5.96e-17 83.2
MS.gene049021.t1 AT1G72330 23.970 267 189 8 73 328 160 423 1.69e-16 81.6
MS.gene049021.t1 AT1G72330 22.194 392 264 14 73 428 160 546 9.78e-16 79.7
MS.gene049021.t1 AT1G80360 23.485 396 250 15 41 424 28 382 2.38e-15 77.8
MS.gene049021.t1 AT1G80360 23.485 396 250 15 41 424 28 382 2.38e-15 77.8
MS.gene049021.t1 AT1G80360 23.485 396 250 15 41 424 28 382 2.38e-15 77.8
MS.gene049021.t1 AT1G80360 23.485 396 250 15 41 424 28 382 2.38e-15 77.8
MS.gene049021.t1 AT1G17290 22.222 297 213 10 78 359 168 461 5.34e-15 77.4
MS.gene049021.t1 AT2G20610 24.225 355 224 14 88 425 109 435 1.10e-14 76.3
MS.gene049021.t1 AT1G77670 24.340 341 233 11 87 424 116 434 1.19e-14 75.9
MS.gene049021.t1 AT4G23600 26.126 333 205 13 117 433 1 308 2.71e-14 73.9
MS.gene049021.t1 AT4G23600 26.168 321 197 12 88 392 78 374 6.92e-14 73.2
MS.gene049021.t1 AT2G20610 25.092 271 168 9 88 345 109 357 1.37e-13 72.8
MS.gene049021.t1 AT4G28410 26.619 278 163 11 88 350 111 362 8.77e-12 67.0
MS.gene049021.t1 AT4G28410 26.642 274 168 10 88 350 111 362 1.06e-11 67.0
MS.gene049021.t1 AT5G53970 23.416 363 233 14 88 433 76 410 3.81e-11 65.1
MS.gene049021.t1 AT4G23590 23.714 350 232 13 88 425 78 404 4.49e-11 64.7

Find 88 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATATATTAAGATTAAT+AGG 0.143027 4.1:+3498679 MS.gene049021:CDS
GCGGTGATGACTATTCTTTC+TGG 0.188225 4.1:-3497729 None:intergenic
GTGATCAACCTGGTTGGTTT+AGG 0.197998 4.1:+3498907 MS.gene049021:CDS
TGATCAACCTGGTTGGTTTA+GGG 0.271865 4.1:+3498908 MS.gene049021:CDS
AACTTCATGGCTAGCCGAAC+AGG 0.317741 4.1:+3498987 MS.gene049021:CDS
ACAAACCCTTCAAACCCTTT+AGG 0.351926 4.1:+3498312 MS.gene049021:CDS
GTCAACTAAGGAAGGTGAAT+TGG 0.354677 4.1:+3498821 MS.gene049021:CDS
GATGAATTAACTAACTCTTC+AGG 0.373544 4.1:+3497395 MS.gene049021:CDS
TGTGCAGGTTTCATTTGATT+TGG 0.377676 4.1:+3497560 MS.gene049021:intron
GAAAACTCACCCTACTTTGC+TGG 0.379915 4.1:+3497344 MS.gene049021:CDS
GAGTTAGTTAATTCATCATA+AGG 0.381161 4.1:-3497389 None:intergenic
GATTCTTACCCTGGATAGTA+AGG 0.392460 4.1:-3497825 None:intergenic
TATAGTCTCTCTAAAGATCT+TGG 0.393148 4.1:+3498513 MS.gene049021:CDS
CTCATTAGCCGCAGTTGCTC+CGG 0.395906 4.1:-3497751 None:intergenic
ACATCTTCTTTGTCCCTGTT+CGG 0.397573 4.1:-3499001 None:intergenic
GAAATATATTAAGATTAATA+GGG 0.399795 4.1:+3498680 MS.gene049021:CDS
AGGAACAAGCAAGGCATCGC+CGG 0.403862 4.1:-3497799 None:intergenic
CTGAAACCATTATAATCCTC+AGG 0.404711 4.1:-3497606 None:intergenic
AAGTGCAATGGCAAGTTTCA+TGG 0.405411 4.1:+3497674 MS.gene049021:CDS
GAGCACCCTGAGGATTATAA+TGG 0.406179 4.1:+3497600 MS.gene049021:CDS
GTTCCTACCCCTTACTATCC+AGG 0.407257 4.1:+3497816 MS.gene049021:CDS
GGAAAGAATACGTAACTTCA+TGG 0.412992 4.1:+3498974 MS.gene049021:CDS
TTTGACCTGTTGCAGTGAAT+TGG 0.417511 4.1:-3498204 None:intergenic
CGTTGAACTGTTATACCTAA+AGG 0.428028 4.1:-3498327 None:intergenic
GTTGAACTGTTATACCTAAA+GGG 0.430255 4.1:-3498326 None:intergenic
GTTATACCTAAAGGGTTTGA+AGG 0.431593 4.1:-3498318 None:intergenic
AATTTATTCATACAATGATA+AGG 0.432216 4.1:+3498560 MS.gene049021:CDS
AGATATGAAATGATTATTGA+AGG 0.438836 4.1:+3498717 MS.gene049021:CDS
TAGTGCCAATTCACTGCAAC+AGG 0.441325 4.1:+3498199 MS.gene049021:CDS
CTGAAATTGAATATATCTCC+AGG 0.445529 4.1:+3498870 MS.gene049021:CDS
GTAGGTTTGATAGAGACTTA+AGG 0.446910 4.1:+3498157 MS.gene049021:intron
GGAACAAGCAAGGCATCGCC+GGG 0.449445 4.1:-3497798 None:intergenic
GCATTATTTCAAGACTATCA+TGG 0.449699 4.1:+3497636 MS.gene049021:CDS
ATTGAAGGCTTGAAAAGTGT+TGG 0.452654 4.1:+3498732 MS.gene049021:CDS
TTAGTTGACTCCTTCAAAAG+TGG 0.458012 4.1:-3498807 None:intergenic
GAGTGTTTGAAAGGGAATGC+AGG 0.465675 4.1:+3498759 MS.gene049021:CDS
AGTTAGTTAATTCATCATAA+GGG 0.468946 4.1:-3497388 None:intergenic
AGGAAGGTGAATTGGAACTT+TGG 0.476087 4.1:+3498829 MS.gene049021:CDS
ACAAACTTTGGATGTTGCAT+TGG 0.480931 4.1:+3498953 MS.gene049021:CDS
GGTCTACCAGGTTTCAGAGT+TGG 0.483669 4.1:+3498534 MS.gene049021:CDS
AAATATGAGTGAACAAACTT+TGG 0.486245 4.1:+3498941 MS.gene049021:CDS
CTCTTCAGGAGTTATACAAA+TGG 0.488431 4.1:+3497409 MS.gene049021:CDS
AGAGACTTAAGGTGGAGAAC+TGG 0.493331 4.1:+3498168 MS.gene049021:CDS
CATCTCAGACGAAATCTACT+CGG 0.501179 4.1:+3498401 MS.gene049021:CDS
GGCTTTCCATCCAGCAAAGT+AGG 0.501359 4.1:-3497354 None:intergenic
TCTAAAGATCTTGGTCTACC+AGG 0.510586 4.1:+3498522 MS.gene049021:CDS
ACAGGGACAAAGAAGATGTA+AGG 0.520984 4.1:+3499005 MS.gene049021:CDS
GCCGGGGTTTGCAAGAATGA+AGG 0.526652 4.1:-3497781 None:intergenic
ACCTTCATTCTTGCAAACCC+CGG 0.529279 4.1:+3497780 MS.gene049021:CDS
ATTGCAATTTCTGACACTCA+TGG 0.531513 4.1:+3497320 MS.gene049021:CDS
TCTTCAGGAGTTATACAAAT+GGG 0.535454 4.1:+3497410 MS.gene049021:CDS
GTCATTGTGATCAACCTGGT+TGG 0.538197 4.1:+3498901 MS.gene049021:CDS
TTCCTACCCCTTACTATCCA+GGG 0.542899 4.1:+3497817 MS.gene049021:CDS
TTATACCTAAAGGGTTTGAA+GGG 0.548536 4.1:-3498317 None:intergenic
ATTCTTACCCTGGATAGTAA+GGG 0.548613 4.1:-3497824 None:intergenic
TAAGCTGCTTCTAAAGCTTG+AGG 0.550801 4.1:-3498243 None:intergenic
AGACGAAATCTACTCGGGCT+CGG 0.552466 4.1:+3498407 MS.gene049021:CDS
TTGTGTTTGTGAAGATATCA+AGG 0.553420 4.1:-3498616 None:intergenic
GGTTTGATAGAGACTTAAGG+TGG 0.553899 4.1:+3498160 MS.gene049021:intron
TTGAAGGAGTCAACTAAGGA+AGG 0.555608 4.1:+3498813 MS.gene049021:CDS
AGATTTCGTCTGAGATGAGG+TGG 0.558059 4.1:-3498395 None:intergenic
GGCTAATATGCTATCAAACA+AGG 0.569007 4.1:+3498647 MS.gene049021:CDS
GTTGGAATTGAGTGTTTGAA+AGG 0.569169 4.1:+3498750 MS.gene049021:CDS
ACTCACCCTACTTTGCTGGA+TGG 0.572647 4.1:+3497348 MS.gene049021:CDS
TTGGAATTGAGTGTTTGAAA+GGG 0.574213 4.1:+3498751 MS.gene049021:CDS
AGTTTCATGGAACAAATAAG+AGG 0.575774 4.1:+3497687 MS.gene049021:CDS
GCTTTCCATCCAGCAAAGTA+GGG 0.580141 4.1:-3497353 None:intergenic
AGGAGTTATACAAATGGGAC+TGG 0.580638 4.1:+3497415 MS.gene049021:CDS
TAAATCATTCAGAAGTGCAA+TGG 0.583118 4.1:+3497662 MS.gene049021:CDS
TCTTGTCATTGTGATCAACC+TGG 0.587957 4.1:+3498897 MS.gene049021:CDS
ATTAGCCGCAGTTGCTCCGG+CGG 0.589538 4.1:-3497748 None:intergenic
CATCACCGCCGGAGCAACTG+CGG 0.595084 4.1:+3497743 MS.gene049021:CDS
ATCTCAGACGAAATCTACTC+GGG 0.596514 4.1:+3498402 MS.gene049021:CDS
TTCTTACCCTGGATAGTAAG+GGG 0.604583 4.1:-3497823 None:intergenic
TCAATGAACATGAAAGTGAG+TGG 0.607414 4.1:+3498279 MS.gene049021:CDS
ATTGTTCCAACTCTGAAACC+TGG 0.608322 4.1:-3498540 None:intergenic
TGAAACCATTATAATCCTCA+GGG 0.627551 4.1:-3497605 None:intergenic
ACTTCATGGCTAGCCGAACA+GGG 0.629105 4.1:+3498988 MS.gene049021:CDS
GAAAGAATAGTCATCACCGC+CGG 0.631099 4.1:+3497732 MS.gene049021:CDS
AGTAGATTTCGTCTGAGATG+AGG 0.631875 4.1:-3498398 None:intergenic
TACCCTGGATAGTAAGGGGT+AGG 0.633960 4.1:-3497819 None:intergenic
TGAAATTGAATATATCTCCA+GGG 0.640695 4.1:+3498871 MS.gene049021:CDS
TTCATGGAACAAATAAGAGG+TGG 0.647531 4.1:+3497690 MS.gene049021:CDS
GTAAGGGGTAGGAACAAGCA+AGG 0.672268 4.1:-3497808 None:intergenic
AAACAGACCCTAAACCAACC+AGG 0.685588 4.1:-3498915 None:intergenic
TCACAATGACAAGAACACCC+TGG 0.704106 4.1:-3498888 None:intergenic
GAACAAGCAAGGCATCGCCG+GGG 0.751656 4.1:-3497797 None:intergenic
GTACTTGAAAGAGCACCCTG+AGG 0.755804 4.1:+3497590 MS.gene049021:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATGAACTAATTAATT+AGG - chr4.1:3497505-3497524 None:intergenic 10.0%
!! AGAAATATATTAAGATTAAT+AGG + chr4.1:3498679-3498698 MS.gene049021:CDS 10.0%
!! GAAATATATTAAGATTAATA+GGG + chr4.1:3498680-3498699 MS.gene049021:CDS 10.0%
!! TTAATTAGTTCATTAATTAA+TGG + chr4.1:3497507-3497526 MS.gene049021:intron 10.0%
!! AATTTATTCATACAATGATA+AGG + chr4.1:3498560-3498579 MS.gene049021:CDS 15.0%
!!! ATATAATCATACTTGATTTT+CGG - chr4.1:3497441-3497460 None:intergenic 15.0%
!! AGATATGAAATGATTATTGA+AGG + chr4.1:3498717-3498736 MS.gene049021:CDS 20.0%
!! AGTTAGTTAATTCATCATAA+GGG - chr4.1:3497391-3497410 None:intergenic 20.0%
!!! AGTTCATTAATTAATGGTTT+TGG + chr4.1:3497513-3497532 MS.gene049021:intron 20.0%
!!! TTAATTTTGAATAACTCTTG+AGG - chr4.1:3497952-3497971 None:intergenic 20.0%
! AAATATGAGTGAACAAACTT+TGG + chr4.1:3498941-3498960 MS.gene049021:CDS 25.0%
! GAGTTAGTTAATTCATCATA+AGG - chr4.1:3497392-3497411 None:intergenic 25.0%
! TATATTAATGTGTATTGTGC+AGG + chr4.1:3497545-3497564 MS.gene049021:intron 25.0%
! TGAAATTGAATATATCTCCA+GGG + chr4.1:3498871-3498890 MS.gene049021:CDS 25.0%
!!! ATTTTACTTGAGAGTGTTTA+TGG - chr4.1:3498004-3498023 None:intergenic 25.0%
AGTTTCATGGAACAAATAAG+AGG + chr4.1:3497687-3497706 MS.gene049021:CDS 30.0%
CTGAAATTGAATATATCTCC+AGG + chr4.1:3498870-3498889 MS.gene049021:CDS 30.0%
GATGAATTAACTAACTCTTC+AGG + chr4.1:3497395-3497414 MS.gene049021:CDS 30.0%
GCATTATTTCAAGACTATCA+TGG + chr4.1:3497636-3497655 MS.gene049021:CDS 30.0%
GTTGAACTGTTATACCTAAA+GGG - chr4.1:3498329-3498348 None:intergenic 30.0%
TCTTCAGGAGTTATACAAAT+GGG + chr4.1:3497410-3497429 MS.gene049021:CDS 30.0%
TGAAACCATTATAATCCTCA+GGG - chr4.1:3497608-3497627 None:intergenic 30.0%
TTATACCTAAAGGGTTTGAA+GGG - chr4.1:3498320-3498339 None:intergenic 30.0%
TTGGAATTGAGTGTTTGAAA+GGG + chr4.1:3498751-3498770 MS.gene049021:CDS 30.0%
TTGTGTTTGTGAAGATATCA+AGG - chr4.1:3498619-3498638 None:intergenic 30.0%
! ATCATAAGGGTTTTCATCAT+AGG - chr4.1:3497378-3497397 None:intergenic 30.0%
! TAAATCATTCAGAAGTGCAA+TGG + chr4.1:3497662-3497681 MS.gene049021:CDS 30.0%
! TATAGTCTCTCTAAAGATCT+TGG + chr4.1:3498513-3498532 MS.gene049021:CDS 30.0%
! TCTTTTGCTTGTACTTTTGT+AGG + chr4.1:3498139-3498158 MS.gene049021:intron 30.0%
! TTCACAAACACAACAGTTTT+TGG + chr4.1:3498626-3498645 MS.gene049021:CDS 30.0%
ACAAACTTTGGATGTTGCAT+TGG + chr4.1:3498953-3498972 MS.gene049021:CDS 35.0%
ATATATAGTCTACGCAAGCA+TGG - chr4.1:3498100-3498119 None:intergenic 35.0%
ATTCTTACCCTGGATAGTAA+GGG - chr4.1:3497827-3497846 None:intergenic 35.0%
ATTGCAATTTCTGACACTCA+TGG + chr4.1:3497320-3497339 MS.gene049021:CDS 35.0%
CGTTGAACTGTTATACCTAA+AGG - chr4.1:3498330-3498349 None:intergenic 35.0%
CTCTTCAGGAGTTATACAAA+TGG + chr4.1:3497409-3497428 MS.gene049021:CDS 35.0%
CTGAAACCATTATAATCCTC+AGG - chr4.1:3497609-3497628 None:intergenic 35.0%
GGAAAGAATACGTAACTTCA+TGG + chr4.1:3498974-3498993 MS.gene049021:CDS 35.0%
GGCTAATATGCTATCAAACA+AGG + chr4.1:3498647-3498666 MS.gene049021:CDS 35.0%
GTAGGTTTGATAGAGACTTA+AGG + chr4.1:3498157-3498176 MS.gene049021:intron 35.0%
GTTATACCTAAAGGGTTTGA+AGG - chr4.1:3498321-3498340 None:intergenic 35.0%
GTTGGAATTGAGTGTTTGAA+AGG + chr4.1:3498750-3498769 MS.gene049021:CDS 35.0%
GTTGTTTATCCAAACATAGC+CGG - chr4.1:3497865-3497884 None:intergenic 35.0%
TCAATGAACATGAAAGTGAG+TGG + chr4.1:3498279-3498298 MS.gene049021:CDS 35.0%
TGTGCAGGTTTCATTTGATT+TGG + chr4.1:3497560-3497579 MS.gene049021:intron 35.0%
TTCATGGAACAAATAAGAGG+TGG + chr4.1:3497690-3497709 MS.gene049021:CDS 35.0%
! ATTGAAGGCTTGAAAAGTGT+TGG + chr4.1:3498732-3498751 MS.gene049021:CDS 35.0%
! TTAGTTGACTCCTTCAAAAG+TGG - chr4.1:3498810-3498829 None:intergenic 35.0%
!! ACTTTTGAAGGAGTCAACTA+AGG + chr4.1:3498809-3498828 MS.gene049021:CDS 35.0%
!! GAATTTGAGTCCACTTTTGA+AGG + chr4.1:3498797-3498816 MS.gene049021:CDS 35.0%
AAGTGCAATGGCAAGTTTCA+TGG + chr4.1:3497674-3497693 MS.gene049021:CDS 40.0%
ACAAACCCTTCAAACCCTTT+AGG + chr4.1:3498312-3498331 MS.gene049021:CDS 40.0%
ACATCTTCTTTGTCCCTGTT+CGG - chr4.1:3499004-3499023 None:intergenic 40.0%
AGGAAGGTGAATTGGAACTT+TGG + chr4.1:3498829-3498848 MS.gene049021:CDS 40.0%
AGGAGTTATACAAATGGGAC+TGG + chr4.1:3497415-3497434 MS.gene049021:CDS 40.0%
ATCTCAGACGAAATCTACTC+GGG + chr4.1:3498402-3498421 MS.gene049021:CDS 40.0%
CATCTCAGACGAAATCTACT+CGG + chr4.1:3498401-3498420 MS.gene049021:CDS 40.0%
GAATCAAGCACCATACAATC+CGG + chr4.1:3497843-3497862 MS.gene049021:intron 40.0%
GATTCTTACCCTGGATAGTA+AGG - chr4.1:3497828-3497847 None:intergenic 40.0%
GGTTTGATAGAGACTTAAGG+TGG + chr4.1:3498160-3498179 MS.gene049021:intron 40.0%
GTCAACTAAGGAAGGTGAAT+TGG + chr4.1:3498821-3498840 MS.gene049021:CDS 40.0%
TCTAAAGATCTTGGTCTACC+AGG + chr4.1:3498522-3498541 MS.gene049021:CDS 40.0%
TCTTGTCATTGTGATCAACC+TGG + chr4.1:3498897-3498916 MS.gene049021:CDS 40.0%
TTCTTACCCTGGATAGTAAG+GGG - chr4.1:3497826-3497845 None:intergenic 40.0%
TTGAAGGAGTCAACTAAGGA+AGG + chr4.1:3498813-3498832 MS.gene049021:CDS 40.0%
TTTGACCTGTTGCAGTGAAT+TGG - chr4.1:3498207-3498226 None:intergenic 40.0%
! AGTAGATTTCGTCTGAGATG+AGG - chr4.1:3498401-3498420 None:intergenic 40.0%
!! ATTGTTCCAACTCTGAAACC+TGG - chr4.1:3498543-3498562 None:intergenic 40.0%
!! GGAATGCAGGATTGTTTTGT+TGG + chr4.1:3498772-3498791 MS.gene049021:CDS 40.0%
!! TAAGCTGCTTCTAAAGCTTG+AGG - chr4.1:3498246-3498265 None:intergenic 40.0%
!! TGATCAACCTGGTTGGTTTA+GGG + chr4.1:3498908-3498927 MS.gene049021:CDS 40.0%
AAACAGACCCTAAACCAACC+AGG - chr4.1:3498918-3498937 None:intergenic 45.0%
AACGAAGCTAGCTAGCTAGA+AGG - chr4.1:3498042-3498061 None:intergenic 45.0%
ACCTTCATTCTTGCAAACCC+CGG + chr4.1:3497780-3497799 MS.gene049021:CDS 45.0%
AGAGACTTAAGGTGGAGAAC+TGG + chr4.1:3498168-3498187 MS.gene049021:CDS 45.0%
ATGGTGCTTGATTCTTACCC+TGG - chr4.1:3497837-3497856 None:intergenic 45.0%
CCAAACATAGCCGGATTGTA+TGG - chr4.1:3497856-3497875 None:intergenic 45.0%
CCATACAATCCGGCTATGTT+TGG + chr4.1:3497853-3497872 MS.gene049021:intron 45.0%
GAAAACTCACCCTACTTTGC+TGG + chr4.1:3497344-3497363 MS.gene049021:CDS 45.0%
GAAAGAATAGTCATCACCGC+CGG + chr4.1:3497732-3497751 MS.gene049021:CDS 45.0%
GAGCACCCTGAGGATTATAA+TGG + chr4.1:3497600-3497619 MS.gene049021:CDS 45.0%
GAGTGTTTGAAAGGGAATGC+AGG + chr4.1:3498759-3498778 MS.gene049021:CDS 45.0%
GCGGTGATGACTATTCTTTC+TGG - chr4.1:3497732-3497751 None:intergenic 45.0%
GCTTTCCATCCAGCAAAGTA+GGG - chr4.1:3497356-3497375 None:intergenic 45.0%
GTCATTGTGATCAACCTGGT+TGG + chr4.1:3498901-3498920 MS.gene049021:CDS 45.0%
TAGTGCCAATTCACTGCAAC+AGG + chr4.1:3498199-3498218 MS.gene049021:CDS 45.0%
TCACAATGACAAGAACACCC+TGG - chr4.1:3498891-3498910 None:intergenic 45.0%
TTCCTACCCCTTACTATCCA+GGG + chr4.1:3497817-3497836 MS.gene049021:CDS 45.0%
! AGATTTCGTCTGAGATGAGG+TGG - chr4.1:3498398-3498417 None:intergenic 45.0%
!! GTGATCAACCTGGTTGGTTT+AGG + chr4.1:3498907-3498926 MS.gene049021:CDS 45.0%
ACTCACCCTACTTTGCTGGA+TGG + chr4.1:3497348-3497367 MS.gene049021:CDS 50.0%
AGACGAAATCTACTCGGGCT+CGG + chr4.1:3498407-3498426 MS.gene049021:CDS 50.0%
GGCTTTCCATCCAGCAAAGT+AGG - chr4.1:3497357-3497376 None:intergenic 50.0%
GGTCTACCAGGTTTCAGAGT+TGG + chr4.1:3498534-3498553 MS.gene049021:CDS 50.0%
GTAAGGGGTAGGAACAAGCA+AGG - chr4.1:3497811-3497830 None:intergenic 50.0%
GTTCCTACCCCTTACTATCC+AGG + chr4.1:3497816-3497835 MS.gene049021:CDS 50.0%
TACCCTGGATAGTAAGGGGT+AGG - chr4.1:3497822-3497841 None:intergenic 50.0%
! AACTTCATGGCTAGCCGAAC+AGG + chr4.1:3498987-3499006 MS.gene049021:CDS 50.0%
! ACTTCATGGCTAGCCGAACA+GGG + chr4.1:3498988-3499007 MS.gene049021:CDS 50.0%
!! GTACTTGAAAGAGCACCCTG+AGG + chr4.1:3497590-3497609 MS.gene049021:CDS 50.0%
CTCATTAGCCGCAGTTGCTC+CGG - chr4.1:3497754-3497773 None:intergenic 55.0%
GCCGGGGTTTGCAAGAATGA+AGG - chr4.1:3497784-3497803 None:intergenic 55.0%
!! AGGAACAAGCAAGGCATCGC+CGG - chr4.1:3497802-3497821 None:intergenic 55.0%
ATTAGCCGCAGTTGCTCCGG+CGG - chr4.1:3497751-3497770 None:intergenic 60.0%
!! GAACAAGCAAGGCATCGCCG+GGG - chr4.1:3497800-3497819 None:intergenic 60.0%
!! GGAACAAGCAAGGCATCGCC+GGG - chr4.1:3497801-3497820 None:intergenic 60.0%
CATCACCGCCGGAGCAACTG+CGG + chr4.1:3497743-3497762 MS.gene049021:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 3497278 3499025 3497278 ID=MS.gene049021
chr4.1 mRNA 3497278 3499025 3497278 ID=MS.gene049021.t1;Parent=MS.gene049021
chr4.1 exon 3497278 3497448 3497278 ID=MS.gene049021.t1.exon1;Parent=MS.gene049021.t1
chr4.1 CDS 3497278 3497448 3497278 ID=cds.MS.gene049021.t1;Parent=MS.gene049021.t1
chr4.1 exon 3497567 3497838 3497567 ID=MS.gene049021.t1.exon2;Parent=MS.gene049021.t1
chr4.1 CDS 3497567 3497838 3497567 ID=cds.MS.gene049021.t1;Parent=MS.gene049021.t1
chr4.1 exon 3498161 3499025 3498161 ID=MS.gene049021.t1.exon3;Parent=MS.gene049021.t1
chr4.1 CDS 3498161 3499025 3498161 ID=cds.MS.gene049021.t1;Parent=MS.gene049021.t1
Gene Sequence

>MS.gene049021

ATGGGTATTGAGATAGAACAAACATGTGTGCAGCTTTCAAACATTGCAATTTCTGACACTCATGGAGAAAACTCACCCTACTTTGCTGGATGGAAAGCCTATGATGAAAACCCTTATGATGAATTAACTAACTCTTCAGGAGTTATACAAATGGGACTGGCCGAAAATCAAGTATGATTATATATATCTTGAATAAGTCTTTTTATGTCTATATATAATTAGCTCCTAATTAATTAGTTCATTAATTAATGGTTTTGGAACTAACTATATATTAATGTGTATTGTGCAGGTTTCATTTGATTTGGTAGAAAAGTACTTGAAAGAGCACCCTGAGGATTATAATGGTTTCAGAGAGAATGCATTATTTCAAGACTATCATGGACTTAAATCATTCAGAAGTGCAATGGCAAGTTTCATGGAACAAATAAGAGGTGGTAGAGCTAAATTTGATCCAGAAAGAATAGTCATCACCGCCGGAGCAACTGCGGCTAATGAGCTTTTAACCTTCATTCTTGCAAACCCCGGCGATGCCTTGCTTGTTCCTACCCCTTACTATCCAGGGTAAGAATCAAGCACCATACAATCCGGCTATGTTTGGATAAACAACTTAATTAATAAACTATTTTTAAAAATACAAGATAAAATACAATTAAACTATTTTCATCAACTATCCTCAAGAGTTATTCAAAATTAAATAGTTTAAGAACAAGTCATAAATTGTTTCCATAAACACTCTCAAGTAAAATATTTATTGATAAAAACCTTCTAGCTAGCTAGCTTCGTTTGTTTTAATTTGTCATTTGAAGCTATAGCATGTAACCATGCTTGCGTAGACTATATATGATGAAATAATCTCATGTATCTTTTGCTTGTACTTTTGTAGGTTTGATAGAGACTTAAGGTGGAGAACTGGTGTAAACATAGTGCCAATTCACTGCAACAGGTCAAACAATTTTCAAATTACACCTCAAGCTTTAGAAGCAGCTTACAAAGAAGCAGAATCAATGAACATGAAAGTGAGTGGAGTACTCATCACAAACCCTTCAAACCCTTTAGGTATAACAGTTCAACGCACAGTTCTTGAAGAGATTCTTGACTTTGTGACTAAAAAGAACATCCACCTCATCTCAGACGAAATCTACTCGGGCTCGGTCTTTAATTCATCTGAGTTTGTAAGCATAGCAGAGATTCTCGAAGCTCGTCGATACAAAGATGCAGAGAGAGTTCACATTGTTTATAGTCTCTCTAAAGATCTTGGTCTACCAGGTTTCAGAGTTGGAACAATTTATTCATACAATGATAAGGTTGTAACAACAGCGCGAAGAATGTCGAGTTTTACCTTGATATCTTCACAAACACAACAGTTTTTGGCTAATATGCTATCAAACAAGGAGTTTACAGAGAAATATATTAAGATTAATAGGGAGAGATTAAAGAAGAGATATGAAATGATTATTGAAGGCTTGAAAAGTGTTGGAATTGAGTGTTTGAAAGGGAATGCAGGATTGTTTTGTTGGATGAATTTGAGTCCACTTTTGAAGGAGTCAACTAAGGAAGGTGAATTGGAACTTTGGAATGTTGTTTTGAATGAACTGAAATTGAATATATCTCCAGGGTGTTCTTGTCATTGTGATCAACCTGGTTGGTTTAGGGTCTGTTTTGCAAATATGAGTGAACAAACTTTGGATGTTGCATTGGAAAGAATACGTAACTTCATGGCTAGCCGAACAGGGACAAAGAAGATGTAA
Protein sequence

>MS.gene049021.t1

MGIEIEQTCVQLSNIAISDTHGENSPYFAGWKAYDENPYDELTNSSGVIQMGLAENQVSFDLVEKYLKEHPEDYNGFRENALFQDYHGLKSFRSAMASFMEQIRGGRAKFDPERIVITAGATAANELLTFILANPGDALLVPTPYYPGFDRDLRWRTGVNIVPIHCNRSNNFQITPQALEAAYKEAESMNMKVSGVLITNPSNPLGITVQRTVLEEILDFVTKKNIHLISDEIYSGSVFNSSEFVSIAEILEARRYKDAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQQFLANMLSNKEFTEKYIKINRERLKKRYEMIIEGLKSVGIECLKGNAGLFCWMNLSPLLKESTKEGELELWNVVLNELKLNISPGCSCHCDQPGWFRVCFANMSEQTLDVALERIRNFMASRTGTKKM