AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55883

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55883.t1 MTR_8g101750 94.713 435 23 0 1 435 1 435 0.0 866
MS.gene55883.t1 MTR_8g101820 88.506 435 37 2 1 435 1 422 0.0 798
MS.gene55883.t1 MTR_6g091760 81.797 434 71 2 1 426 1 434 0.0 755
MS.gene55883.t1 MTR_5g015020 58.391 435 164 6 12 430 4 437 0.0 538
MS.gene55883.t1 MTR_4g097540 57.639 432 165 5 12 426 4 434 0.0 533
MS.gene55883.t1 MTR_3g103550 57.412 425 170 3 12 425 2 426 0.0 529
MS.gene55883.t1 MTR_8g098930 57.277 426 173 2 12 428 12 437 0.0 526
MS.gene55883.t1 MTR_8g028600 54.779 429 186 2 12 433 11 438 0.0 517
MS.gene55883.t1 MTR_7g079080 55.452 431 185 1 12 435 11 441 0.0 516
MS.gene55883.t1 MTR_6g463260 45.047 424 224 2 8 423 100 522 5.17e-144 421
MS.gene55883.t1 MTR_7g079080 55.357 336 150 0 100 435 1 336 5.63e-141 408
MS.gene55883.t1 MTR_5g011400 43.735 407 219 3 24 422 84 488 4.57e-130 384
MS.gene55883.t1 MTR_2g090730 55.405 74 29 1 77 150 31 100 1.12e-20 90.1
MS.gene55883.t1 MTR_8g091280 23.350 394 259 15 46 423 97 463 3.02e-16 80.9
MS.gene55883.t1 MTR_5g033230 24.611 321 219 13 72 372 90 407 5.23e-16 80.1
MS.gene55883.t1 MTR_5g033230 24.595 309 212 12 83 373 103 408 6.06e-16 80.1
MS.gene55883.t1 MTR_4g011820 23.101 316 211 11 115 423 92 382 1.53e-15 78.6
MS.gene55883.t1 MTR_2g090615 23.743 358 230 12 88 429 86 416 5.45e-14 73.9
MS.gene55883.t1 MTR_8g023140 22.102 371 261 14 78 425 149 514 1.42e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55883.t1 AT4G26200 75.291 429 97 3 10 429 16 444 0.0 662
MS.gene55883.t1 AT4G37770 59.765 425 161 2 12 426 4 428 0.0 548
MS.gene55883.t1 AT4G08040 58.531 422 168 1 12 426 2 423 0.0 543
MS.gene55883.t1 AT3G49700 57.763 438 169 4 11 433 3 439 0.0 532
MS.gene55883.t1 AT5G65800 57.981 426 169 3 11 426 3 428 0.0 531
MS.gene55883.t1 AT3G61510 56.161 422 175 2 12 426 11 429 0.0 522
MS.gene55883.t1 AT2G22810 56.941 425 172 3 10 423 2 426 0.0 522
MS.gene55883.t1 AT4G11280 55.787 432 184 1 4 428 7 438 0.0 518
MS.gene55883.t1 AT1G01480 51.598 438 202 3 1 428 1 438 4.91e-172 491
MS.gene55883.t1 AT5G51690 44.313 422 226 3 10 423 67 487 8.03e-138 404
MS.gene55883.t1 AT1G01480 52.711 332 154 2 100 428 1 332 3.64e-134 391
MS.gene55883.t1 AT1G62960 42.402 408 226 5 22 423 143 547 9.94e-127 378
MS.gene55883.t1 AT5G51690 47.230 343 180 1 81 423 23 364 2.71e-123 363
MS.gene55883.t1 AT1G23310 25.632 277 188 9 83 344 103 376 1.60e-17 84.7
MS.gene55883.t1 AT1G23310 25.632 277 188 9 83 344 103 376 2.43e-17 84.3
MS.gene55883.t1 AT5G36160 23.757 362 235 13 83 429 80 415 5.34e-17 83.2
MS.gene55883.t1 AT1G70580 25.271 277 189 10 83 344 103 376 1.27e-16 82.4
MS.gene55883.t1 AT1G70580 25.271 277 189 10 83 344 103 376 1.27e-16 82.4
MS.gene55883.t1 AT1G70580 25.271 277 189 10 83 344 103 376 1.27e-16 82.4
MS.gene55883.t1 AT1G70580 25.271 277 189 10 83 344 103 376 1.27e-16 82.4
MS.gene55883.t1 AT1G72330 22.606 376 263 14 73 425 160 530 2.46e-16 81.6
MS.gene55883.t1 AT1G80360 23.797 395 248 15 41 423 28 381 4.99e-16 80.1
MS.gene55883.t1 AT1G80360 23.797 395 248 15 41 423 28 381 4.99e-16 80.1
MS.gene55883.t1 AT1G80360 23.797 395 248 15 41 423 28 381 4.99e-16 80.1
MS.gene55883.t1 AT1G80360 23.797 395 248 15 41 423 28 381 4.99e-16 80.1
MS.gene55883.t1 AT1G72330 23.596 267 190 8 73 328 160 423 8.58e-16 79.3
MS.gene55883.t1 AT1G77670 24.207 347 238 11 87 430 116 440 1.06e-15 79.3
MS.gene55883.t1 AT2G20610 24.513 359 226 14 88 429 109 439 2.02e-15 78.6
MS.gene55883.t1 AT1G72330 21.851 389 263 14 73 425 160 543 1.04e-14 76.6
MS.gene55883.t1 AT4G23600 25.767 326 207 12 117 429 1 304 1.25e-14 75.1
MS.gene55883.t1 AT1G17290 22.148 298 212 11 78 359 168 461 3.98e-14 74.7
MS.gene55883.t1 AT2G20610 25.461 271 167 9 88 345 109 357 7.77e-14 73.6
MS.gene55883.t1 AT4G23590 24.148 352 236 12 88 429 78 408 5.56e-12 67.8
MS.gene55883.t1 AT5G53970 23.691 363 232 14 88 433 76 410 1.08e-11 66.6

Find 87 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATATATTAAGATTAAT+AGG 0.143027 4.3:+3519587 MS.gene55883:CDS
GTGATCAACCTGGTTGGTTT+AGG 0.197998 4.3:+3519815 MS.gene55883:CDS
TGTAAGCATAGCAGAGATTC+TGG 0.267334 4.3:+3519357 MS.gene55883:CDS
TGATCAACCTGGTTGGTTTA+GGG 0.271865 4.3:+3519816 MS.gene55883:CDS
GCGGTGATGACTATTCTTTC+CGG 0.294737 4.3:-3518511 None:intergenic
ATAATGACAAAGAAGATATA+AGG 0.344052 4.3:+3519913 MS.gene55883:CDS
ACAAACCCTTCAAACCCTTT+AGG 0.351926 4.3:+3519220 MS.gene55883:CDS
GTCAACTAAGGAAGGTGAAT+TGG 0.354677 4.3:+3519729 MS.gene55883:CDS
TTGAACCCATTATAATCCTC+TGG 0.370626 4.3:-3518388 None:intergenic
CTTATACCTAAAGGGTTTGA+AGG 0.372847 4.3:-3519226 None:intergenic
GATGAGTTAACTAACTCTTC+AGG 0.373544 4.3:+3518183 MS.gene55883:CDS
GAGCACCCAGAGGATTATAA+TGG 0.378796 4.3:+3518382 MS.gene55883:CDS
GAAAACTCACCCTACTTTGC+TGG 0.379915 4.3:+3518132 MS.gene55883:CDS
AAGTGCAATGGCAAGCTTCA+TGG 0.383493 4.3:+3518456 MS.gene55883:CDS
TATAGTCTCTCTAAAGATCT+TGG 0.393148 4.3:+3519421 MS.gene55883:CDS
CGTTGAACTCTTATACCTAA+AGG 0.396555 4.3:-3519235 None:intergenic
GAAATATATTAAGATTAATA+GGG 0.399795 4.3:+3519588 MS.gene55883:CDS
AGGAACAAGCAAGGCATCGC+CGG 0.403862 4.3:-3518581 None:intergenic
GTTGAACTCTTATACCTAAA+GGG 0.405749 4.3:-3519234 None:intergenic
GAGTTAGTTAACTCATCATA+AGG 0.406566 4.3:-3518177 None:intergenic
TTTGACCTGTTGCAGTGAAT+TGG 0.417511 4.3:-3519112 None:intergenic
GTTCCTACCCCGTACTATCC+AGG 0.422363 4.3:+3518598 MS.gene55883:CDS
GGAAAGAATACGTAGCTTCA+TGG 0.427457 4.3:+3519882 MS.gene55883:CDS
AATTTATTCATACAATGATA+AGG 0.432216 4.3:+3519468 MS.gene55883:CDS
CGACTTGGTAGAAAAGTACT+TGG 0.434235 4.3:+3518357 MS.gene55883:CDS
GATTCTTACCCTGGATAGTA+CGG 0.435827 4.3:-3518607 None:intergenic
AGATATGAAATGATTATTGA+AGG 0.438836 4.3:+3519625 MS.gene55883:CDS
TAGTGCCAATTCACTGCAAC+AGG 0.441325 4.3:+3519107 MS.gene55883:CDS
CTGAAATTGAATATATCTCC+AGG 0.445529 4.3:+3519778 MS.gene55883:CDS
GTAGGTTTGATAGAGACTTA+AGG 0.446910 4.3:+3519065 MS.gene55883:intron
GGAACAAGCAAGGCATCGCC+GGG 0.449445 4.3:-3518580 None:intergenic
GCATTATTTCAAGACTATCA+TGG 0.449699 4.3:+3518418 MS.gene55883:CDS
ATTGAAGGCTTGAAAAGTGT+TGG 0.452654 4.3:+3519640 MS.gene55883:CDS
TTAGTTGACTCCTTCAAAAG+TGG 0.458012 4.3:-3519715 None:intergenic
GAGTGTTTGAAAGGGAATGC+AGG 0.465675 4.3:+3519667 MS.gene55883:CDS
AGGAAGGTGAATTGGAACTT+TGG 0.476087 4.3:+3519737 MS.gene55883:CDS
AGTTAGTTAACTCATCATAA+GGG 0.478302 4.3:-3518176 None:intergenic
ACAAACTTTGGATGTTGCAT+TGG 0.480931 4.3:+3519861 MS.gene55883:CDS
GGTCTACCAGGTTTCAGAGT+TGG 0.483669 4.3:+3519442 MS.gene55883:CDS
AAATATGAGTGAACAAACTT+TGG 0.486245 4.3:+3519849 MS.gene55883:CDS
CTCTTCAGGAGTTATACAAA+TGG 0.489531 4.3:+3518197 MS.gene55883:CDS
AGAGACTTAAGGTGGAGAAC+TGG 0.493331 4.3:+3519076 MS.gene55883:CDS
CATCTCAGACGAAATCTACT+CGG 0.501179 4.3:+3519309 MS.gene55883:CDS
GGCTTTCCATCCAGCAAAGT+AGG 0.501359 4.3:-3518142 None:intergenic
ATTCTTACCCTGGATAGTAC+GGG 0.503055 4.3:-3518606 None:intergenic
TCTAAAGATCTTGGTCTACC+AGG 0.510586 4.3:+3519430 MS.gene55883:CDS
AGCACCCAGAGGATTATAAT+GGG 0.511530 4.3:+3518383 MS.gene55883:CDS
TCTTCAGGAGTTATACAAAT+GGG 0.513889 4.3:+3518198 MS.gene55883:CDS
TGGTAGAGCTAAATTTGATC+CGG 0.517167 4.3:+3518492 MS.gene55883:CDS
GCCGGGGTTTGCAAGAATGA+AGG 0.526652 4.3:-3518563 None:intergenic
ACCTTCATTCTTGCAAACCC+CGG 0.529279 4.3:+3518562 MS.gene55883:CDS
TTGTGTTTGTGATGATATCA+AGG 0.530436 4.3:-3519524 None:intergenic
ATTGCAATTTCTGACACTCA+TGG 0.531513 4.3:+3518108 MS.gene55883:CDS
TGAACCCATTATAATCCTCT+GGG 0.532479 4.3:-3518387 None:intergenic
GTCATTGTGATCAACCTGGT+TGG 0.538197 4.3:+3519809 MS.gene55883:CDS
TTATACCTAAAGGGTTTGAA+GGG 0.546364 4.3:-3519225 None:intergenic
TAAGCTGCTTCTAAAGCTTG+AGG 0.550801 4.3:-3519151 None:intergenic
AGACGAAATCTACTCGGGCT+CGG 0.552466 4.3:+3519315 MS.gene55883:CDS
TGTGCAGGTTTCGTTCGACT+TGG 0.553387 4.3:+3518342 MS.gene55883:intron
GGTTTGATAGAGACTTAAGG+TGG 0.553899 4.3:+3519068 MS.gene55883:intron
TTGAAGGAGTCAACTAAGGA+AGG 0.555608 4.3:+3519721 MS.gene55883:CDS
AGATTTCGTCTGAGATGAGG+TGG 0.558059 4.3:-3519303 None:intergenic
GTTGGAATTGAGTGTTTGAA+AGG 0.569169 4.3:+3519658 MS.gene55883:CDS
ATTAGCCGCAGTTGCTCCTG+CGG 0.571832 4.3:-3518530 None:intergenic
ACTCACCCTACTTTGCTGGA+TGG 0.572647 4.3:+3518136 MS.gene55883:CDS
GGCTAATATGCTATCAGACA+AGG 0.573142 4.3:+3519555 MS.gene55883:CDS
TTGGAATTGAGTGTTTGAAA+GGG 0.574213 4.3:+3519659 MS.gene55883:CDS
GCTTTCCATCCAGCAAAGTA+GGG 0.580141 4.3:-3518141 None:intergenic
AGCTTCATGGAACAAATAAG+AGG 0.582469 4.3:+3518469 MS.gene55883:CDS
TAAATCATTCAGAAGTGCAA+TGG 0.583118 4.3:+3518444 MS.gene55883:CDS
TCTTGTCATTGTGATCAACC+TGG 0.587957 4.3:+3519805 MS.gene55883:CDS
ATCTCAGACGAAATCTACTC+GGG 0.596514 4.3:+3519310 MS.gene55883:CDS
TTCCTACCCCGTACTATCCA+GGG 0.606239 4.3:+3518599 MS.gene55883:CDS
TCAATGAACATGAAAGTGAG+TGG 0.607414 4.3:+3519187 MS.gene55883:CDS
ATTGTTCCAACTCTGAAACC+TGG 0.608322 4.3:-3519448 None:intergenic
GAAAGAATAGTCATCACCGC+AGG 0.624197 4.3:+3518514 MS.gene55883:CDS
AGTAGATTTCGTCTGAGATG+AGG 0.631875 4.3:-3519306 None:intergenic
TGAAATTGAATATATCTCCA+GGG 0.640695 4.3:+3519779 MS.gene55883:CDS
TTCATGGAACAAATAAGAGG+TGG 0.647531 4.3:+3518472 MS.gene55883:CDS
CATCACCGCAGGAGCAACTG+CGG 0.654637 4.3:+3518525 MS.gene55883:CDS
TACCCTGGATAGTACGGGGT+AGG 0.665259 4.3:-3518601 None:intergenic
GTACGGGGTAGGAACAAGCA+AGG 0.685560 4.3:-3518590 None:intergenic
AAACAGACCCTAAACCAACC+AGG 0.685588 4.3:-3519823 None:intergenic
TTCTTACCCTGGATAGTACG+GGG 0.696996 4.3:-3518605 None:intergenic
TCACAATGACAAGAACACCC+TGG 0.704106 4.3:-3519796 None:intergenic
GAACAAGCAAGGCATCGCCG+GGG 0.751656 4.3:-3518579 None:intergenic
GTACTTGGAAGAGCACCCAG+AGG 0.784244 4.3:+3518372 MS.gene55883:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATATATTAAGATTAAT+AGG + chr4.3:3519587-3519606 MS.gene55883:CDS 10.0%
!! GAAATATATTAAGATTAATA+GGG + chr4.3:3519588-3519607 MS.gene55883:CDS 10.0%
!! AATTTATTCATACAATGATA+AGG + chr4.3:3519468-3519487 MS.gene55883:CDS 15.0%
!! AGATATGAAATGATTATTGA+AGG + chr4.3:3519625-3519644 MS.gene55883:CDS 20.0%
! AAATATGAGTGAACAAACTT+TGG + chr4.3:3519849-3519868 MS.gene55883:CDS 25.0%
! AGTTAGTTAACTCATCATAA+GGG - chr4.3:3518179-3518198 None:intergenic 25.0%
! CACTTCATCATAAAGAAAAA+AGG - chr4.3:3518910-3518929 None:intergenic 25.0%
! TATATTAATGTGTATTGTGC+AGG + chr4.3:3518327-3518346 MS.gene55883:intron 25.0%
! TGAAATTGAATATATCTCCA+GGG + chr4.3:3519779-3519798 MS.gene55883:CDS 25.0%
!! TCTTTTTCTTGTACTTTTGT+AGG + chr4.3:3519047-3519066 MS.gene55883:intron 25.0%
!!! ATATTACTTGAGAGTGTTTA+TGG - chr4.3:3518801-3518820 None:intergenic 25.0%
ATAGTTAGTTCCAAAACCAT+TGG - chr4.3:3518308-3518327 None:intergenic 30.0%
ATTGTTTATCCAAACATAGC+CGG - chr4.3:3518647-3518666 None:intergenic 30.0%
CTGAAATTGAATATATCTCC+AGG + chr4.3:3519778-3519797 MS.gene55883:CDS 30.0%
GAGTTAGTTAACTCATCATA+AGG - chr4.3:3518180-3518199 None:intergenic 30.0%
GCATTATTTCAAGACTATCA+TGG + chr4.3:3518418-3518437 MS.gene55883:CDS 30.0%
GTTGAACTCTTATACCTAAA+GGG - chr4.3:3519237-3519256 None:intergenic 30.0%
TCTTCAGGAGTTATACAAAT+GGG + chr4.3:3518198-3518217 MS.gene55883:CDS 30.0%
TTATACCTAAAGGGTTTGAA+GGG - chr4.3:3519228-3519247 None:intergenic 30.0%
TTGGAATTGAGTGTTTGAAA+GGG + chr4.3:3519659-3519678 MS.gene55883:CDS 30.0%
TTGTGTTTGTGATGATATCA+AGG - chr4.3:3519527-3519546 None:intergenic 30.0%
! ATCACAAACACAACAGTTTT+TGG + chr4.3:3519534-3519553 MS.gene55883:CDS 30.0%
! ATCATAAGGGTTTTCATCAT+AGG - chr4.3:3518166-3518185 None:intergenic 30.0%
! TAAATCATTCAGAAGTGCAA+TGG + chr4.3:3518444-3518463 MS.gene55883:CDS 30.0%
! TATAGTCTCTCTAAAGATCT+TGG + chr4.3:3519421-3519440 MS.gene55883:CDS 30.0%
!! ACTATTTTTCATAACTCTCG+AGG - chr4.3:3518754-3518773 None:intergenic 30.0%
AAACCATTGGTGAACGAATT+AGG - chr4.3:3518295-3518314 None:intergenic 35.0%
ACAAACTTTGGATGTTGCAT+TGG + chr4.3:3519861-3519880 MS.gene55883:CDS 35.0%
AGCTTCATGGAACAAATAAG+AGG + chr4.3:3518469-3518488 MS.gene55883:CDS 35.0%
ATTGCAATTTCTGACACTCA+TGG + chr4.3:3518108-3518127 MS.gene55883:CDS 35.0%
CGTTGAACTCTTATACCTAA+AGG - chr4.3:3519238-3519257 None:intergenic 35.0%
CTCTTCAGGAGTTATACAAA+TGG + chr4.3:3518197-3518216 MS.gene55883:CDS 35.0%
CTTATACCTAAAGGGTTTGA+AGG - chr4.3:3519229-3519248 None:intergenic 35.0%
GATGAGTTAACTAACTCTTC+AGG + chr4.3:3518183-3518202 MS.gene55883:CDS 35.0%
GTAGGTTTGATAGAGACTTA+AGG + chr4.3:3519065-3519084 MS.gene55883:intron 35.0%
GTTGGAATTGAGTGTTTGAA+AGG + chr4.3:3519658-3519677 MS.gene55883:CDS 35.0%
TCAATGAACATGAAAGTGAG+TGG + chr4.3:3519187-3519206 MS.gene55883:CDS 35.0%
TGAACCCATTATAATCCTCT+GGG - chr4.3:3518390-3518409 None:intergenic 35.0%
TGGTAGAGCTAAATTTGATC+CGG + chr4.3:3518492-3518511 MS.gene55883:CDS 35.0%
TTCATGGAACAAATAAGAGG+TGG + chr4.3:3518472-3518491 MS.gene55883:CDS 35.0%
TTGAACCCATTATAATCCTC+TGG - chr4.3:3518391-3518410 None:intergenic 35.0%
! AATTCGTTCACCAATGGTTT+TGG + chr4.3:3518295-3518314 MS.gene55883:intron 35.0%
! ATTGAAGGCTTGAAAAGTGT+TGG + chr4.3:3519640-3519659 MS.gene55883:CDS 35.0%
! TTAGTTGACTCCTTCAAAAG+TGG - chr4.3:3519718-3519737 None:intergenic 35.0%
!! ACTTTTGAAGGAGTCAACTA+AGG + chr4.3:3519717-3519736 MS.gene55883:CDS 35.0%
!! GAATTTGAGTCCACTTTTGA+AGG + chr4.3:3519705-3519724 MS.gene55883:CDS 35.0%
AAGCTAGCTAGCTAGCTAAA+AGG - chr4.3:3518946-3518965 None:intergenic 40.0%
ACAAACCCTTCAAACCCTTT+AGG + chr4.3:3519220-3519239 MS.gene55883:CDS 40.0%
ACATATAGTCTACGCAAGCA+TGG - chr4.3:3519008-3519027 None:intergenic 40.0%
AGCACCCAGAGGATTATAAT+GGG + chr4.3:3518383-3518402 MS.gene55883:CDS 40.0%
AGGAAGGTGAATTGGAACTT+TGG + chr4.3:3519737-3519756 MS.gene55883:CDS 40.0%
ATCTCAGACGAAATCTACTC+GGG + chr4.3:3519310-3519329 MS.gene55883:CDS 40.0%
ATTCTTACCCTGGATAGTAC+GGG - chr4.3:3518609-3518628 None:intergenic 40.0%
CATCTCAGACGAAATCTACT+CGG + chr4.3:3519309-3519328 MS.gene55883:CDS 40.0%
GAATCAAGCACCATACAATC+CGG + chr4.3:3518625-3518644 MS.gene55883:intron 40.0%
GATTCTTACCCTGGATAGTA+CGG - chr4.3:3518610-3518629 None:intergenic 40.0%
GGAAAGAATACGTAGCTTCA+TGG + chr4.3:3519882-3519901 MS.gene55883:CDS 40.0%
GGCTAATATGCTATCAGACA+AGG + chr4.3:3519555-3519574 MS.gene55883:CDS 40.0%
GGTTTGATAGAGACTTAAGG+TGG + chr4.3:3519068-3519087 MS.gene55883:intron 40.0%
GTCAACTAAGGAAGGTGAAT+TGG + chr4.3:3519729-3519748 MS.gene55883:CDS 40.0%
TCTAAAGATCTTGGTCTACC+AGG + chr4.3:3519430-3519449 MS.gene55883:CDS 40.0%
TCTTGTCATTGTGATCAACC+TGG + chr4.3:3519805-3519824 MS.gene55883:CDS 40.0%
TGTAAGCATAGCAGAGATTC+TGG + chr4.3:3519357-3519376 MS.gene55883:CDS 40.0%
TTGAAGGAGTCAACTAAGGA+AGG + chr4.3:3519721-3519740 MS.gene55883:CDS 40.0%
TTTGACCTGTTGCAGTGAAT+TGG - chr4.3:3519115-3519134 None:intergenic 40.0%
! AGTAGATTTCGTCTGAGATG+AGG - chr4.3:3519309-3519328 None:intergenic 40.0%
!! ATTGTTCCAACTCTGAAACC+TGG - chr4.3:3519451-3519470 None:intergenic 40.0%
!! CGACTTGGTAGAAAAGTACT+TGG + chr4.3:3518357-3518376 MS.gene55883:CDS 40.0%
!! GGAATGCAGGATTGTTTTGT+TGG + chr4.3:3519680-3519699 MS.gene55883:CDS 40.0%
!! TAAGCTGCTTCTAAAGCTTG+AGG - chr4.3:3519154-3519173 None:intergenic 40.0%
!! TGATCAACCTGGTTGGTTTA+GGG + chr4.3:3519816-3519835 MS.gene55883:CDS 40.0%
AAACAGACCCTAAACCAACC+AGG - chr4.3:3519826-3519845 None:intergenic 45.0%
AAGTGCAATGGCAAGCTTCA+TGG + chr4.3:3518456-3518475 MS.gene55883:CDS 45.0%
ACCTTCATTCTTGCAAACCC+CGG + chr4.3:3518562-3518581 MS.gene55883:CDS 45.0%
AGAGACTTAAGGTGGAGAAC+TGG + chr4.3:3519076-3519095 MS.gene55883:CDS 45.0%
ATGGTGCTTGATTCTTACCC+TGG - chr4.3:3518619-3518638 None:intergenic 45.0%
CCAAACATAGCCGGATTGTA+TGG - chr4.3:3518638-3518657 None:intergenic 45.0%
CCATACAATCCGGCTATGTT+TGG + chr4.3:3518635-3518654 MS.gene55883:intron 45.0%
GAAAACTCACCCTACTTTGC+TGG + chr4.3:3518132-3518151 MS.gene55883:CDS 45.0%
GAAAGAATAGTCATCACCGC+AGG + chr4.3:3518514-3518533 MS.gene55883:CDS 45.0%
GAGCACCCAGAGGATTATAA+TGG + chr4.3:3518382-3518401 MS.gene55883:CDS 45.0%
GAGTGTTTGAAAGGGAATGC+AGG + chr4.3:3519667-3519686 MS.gene55883:CDS 45.0%
GCGGTGATGACTATTCTTTC+CGG - chr4.3:3518514-3518533 None:intergenic 45.0%
GCTCCTAATTCGTTCACCAA+TGG + chr4.3:3518289-3518308 MS.gene55883:intron 45.0%
GCTTTCCATCCAGCAAAGTA+GGG - chr4.3:3518144-3518163 None:intergenic 45.0%
GTCATTGTGATCAACCTGGT+TGG + chr4.3:3519809-3519828 MS.gene55883:CDS 45.0%
TAGTGCCAATTCACTGCAAC+AGG + chr4.3:3519107-3519126 MS.gene55883:CDS 45.0%
TCACAATGACAAGAACACCC+TGG - chr4.3:3519799-3519818 None:intergenic 45.0%
TTCTTACCCTGGATAGTACG+GGG - chr4.3:3518608-3518627 None:intergenic 45.0%
! AGATTTCGTCTGAGATGAGG+TGG - chr4.3:3519306-3519325 None:intergenic 45.0%
!! GTGATCAACCTGGTTGGTTT+AGG + chr4.3:3519815-3519834 MS.gene55883:CDS 45.0%
ACTCACCCTACTTTGCTGGA+TGG + chr4.3:3518136-3518155 MS.gene55883:CDS 50.0%
AGACGAAATCTACTCGGGCT+CGG + chr4.3:3519315-3519334 MS.gene55883:CDS 50.0%
GGCTTTCCATCCAGCAAAGT+AGG - chr4.3:3518145-3518164 None:intergenic 50.0%
GGTCTACCAGGTTTCAGAGT+TGG + chr4.3:3519442-3519461 MS.gene55883:CDS 50.0%
TGTGCAGGTTTCGTTCGACT+TGG + chr4.3:3518342-3518361 MS.gene55883:intron 50.0%
TTCCTACCCCGTACTATCCA+GGG + chr4.3:3518599-3518618 MS.gene55883:CDS 50.0%
ATTAGCCGCAGTTGCTCCTG+CGG - chr4.3:3518533-3518552 None:intergenic 55.0%
GCCGGGGTTTGCAAGAATGA+AGG - chr4.3:3518566-3518585 None:intergenic 55.0%
GTACGGGGTAGGAACAAGCA+AGG - chr4.3:3518593-3518612 None:intergenic 55.0%
GTTCCTACCCCGTACTATCC+AGG + chr4.3:3518598-3518617 MS.gene55883:CDS 55.0%
TACCCTGGATAGTACGGGGT+AGG - chr4.3:3518604-3518623 None:intergenic 55.0%
!! AGGAACAAGCAAGGCATCGC+CGG - chr4.3:3518584-3518603 None:intergenic 55.0%
!! GTACTTGGAAGAGCACCCAG+AGG + chr4.3:3518372-3518391 MS.gene55883:CDS 55.0%
CATCACCGCAGGAGCAACTG+CGG + chr4.3:3518525-3518544 MS.gene55883:CDS 60.0%
!! GAACAAGCAAGGCATCGCCG+GGG - chr4.3:3518582-3518601 None:intergenic 60.0%
!! GGAACAAGCAAGGCATCGCC+GGG - chr4.3:3518583-3518602 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 3518066 3519933 3518066 ID=MS.gene55883
chr4.3 mRNA 3518066 3519933 3518066 ID=MS.gene55883.t1;Parent=MS.gene55883
chr4.3 exon 3518066 3518236 3518066 ID=MS.gene55883.t1.exon1;Parent=MS.gene55883.t1
chr4.3 CDS 3518066 3518236 3518066 ID=cds.MS.gene55883.t1;Parent=MS.gene55883.t1
chr4.3 exon 3518349 3518620 3518349 ID=MS.gene55883.t1.exon2;Parent=MS.gene55883.t1
chr4.3 CDS 3518349 3518620 3518349 ID=cds.MS.gene55883.t1;Parent=MS.gene55883.t1
chr4.3 exon 3519069 3519933 3519069 ID=MS.gene55883.t1.exon3;Parent=MS.gene55883.t1
chr4.3 CDS 3519069 3519933 3519069 ID=cds.MS.gene55883.t1;Parent=MS.gene55883.t1
Gene Sequence

>MS.gene55883

ATGGGTATTGAGATAGAACAATCTTGTGTACAACTTTCAAACATTGCAATTTCTGACACTCATGGAGAAAACTCACCCTACTTTGCTGGATGGAAAGCCTATGATGAAAACCCTTATGATGAGTTAACTAACTCTTCAGGAGTTATACAAATGGGATTAGCAGAAAATCAAGTATGTTTATATATCTTGAATTAATAAGTCTTATTATGTCTATATATAATTAGCTCCTAATTCGTTCACCAATGGTTTTGGAACTAACTATATATTAATGTGTATTGTGCAGGTTTCGTTCGACTTGGTAGAAAAGTACTTGGAAGAGCACCCAGAGGATTATAATGGGTTCAAAGAGAATGCATTATTTCAAGACTATCATGGACTTAAATCATTCAGAAGTGCAATGGCAAGCTTCATGGAACAAATAAGAGGTGGTAGAGCTAAATTTGATCCGGAAAGAATAGTCATCACCGCAGGAGCAACTGCGGCTAATGAGCTTTTAACCTTCATTCTTGCAAACCCCGGCGATGCCTTGCTTGTTCCTACCCCGTACTATCCAGGGTAAGAATCAAGCACCATACAATCCGGCTATGTTTGGATAAACAATTTAATTGATAAACTATGTCTATAATACATGATAAAATACAACTAAACTATTTTATATAAGTTATAAATTGTTTTCACTAGCATTCCTCGAGAGTTATGAAAAATAGTTTAAGCAGAAGTCATAAGTTGTTTCCATAAACACTCTCAAGTAATATCAGTAGATAAATTCAAATAAATCAATTCAAAAAGAGTGCATATGTCTTAATAACACGCGTAAAATTTCACACATTTATTTCATGCACCTTTTTTCTTTATGATGAAGTGCTATTATTAAAAACCTTTTAGCTAGCTAGCTAGCTTCATTTGCTTTAATTTATCATTAGAAGCTATAGTATGTAACCATGCTTGCGTAGACTATATGTGATGAAATAATCTCATGTATCTTTTTCTTGTACTTTTGTAGGTTTGATAGAGACTTAAGGTGGAGAACTGGTGTAAACATAGTGCCAATTCACTGCAACAGGTCAAACAATTTTCAAATTACACCTCAAGCTTTAGAAGCAGCTTACAAAGAAGCAGAATCAATGAACATGAAAGTGAGTGGAGTACTCATCACAAACCCTTCAAACCCTTTAGGTATAAGAGTTCAACGCACAGTTCTTGAAGAGATTCTTGACTTTGTGACTAAAAAGAACATCCACCTCATCTCAGACGAAATCTACTCGGGCTCGGTCTTTAATTCATCTGAGTTTGTAAGCATAGCAGAGATTCTGGAAGCTCGTCGATACAAAGATGCAGAGAGAGTTCACATTGTTTATAGTCTCTCTAAAGATCTTGGTCTACCAGGTTTCAGAGTTGGAACAATTTATTCATACAATGATAAGGTTGTAACAACAGCGCGAAGAATGTCGAGTTTTACCTTGATATCATCACAAACACAACAGTTTTTGGCTAATATGCTATCAGACAAGGAGTTTACAGAGAAATATATTAAGATTAATAGGGAGAGATTAAAGAAGAGATATGAAATGATTATTGAAGGCTTGAAAAGTGTTGGAATTGAGTGTTTGAAAGGGAATGCAGGATTGTTTTGTTGGATGAATTTGAGTCCACTTTTGAAGGAGTCAACTAAGGAAGGTGAATTGGAACTTTGGAATGTTGTTTTGAATGAACTGAAATTGAATATATCTCCAGGGTGTTCTTGTCATTGTGATCAACCTGGTTGGTTTAGGGTCTGTTTTGCAAATATGAGTGAACAAACTTTGGATGTTGCATTGGAAAGAATACGTAGCTTCATGGCTAGAAGAATAATGACAAAGAAGATATAA
Protein sequence

>MS.gene55883.t1

MGIEIEQSCVQLSNIAISDTHGENSPYFAGWKAYDENPYDELTNSSGVIQMGLAENQVSFDLVEKYLEEHPEDYNGFKENALFQDYHGLKSFRSAMASFMEQIRGGRAKFDPERIVITAGATAANELLTFILANPGDALLVPTPYYPGFDRDLRWRTGVNIVPIHCNRSNNFQITPQALEAAYKEAESMNMKVSGVLITNPSNPLGIRVQRTVLEEILDFVTKKNIHLISDEIYSGSVFNSSEFVSIAEILEARRYKDAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQQFLANMLSDKEFTEKYIKINRERLKKRYEMIIEGLKSVGIECLKGNAGLFCWMNLSPLLKESTKEGELELWNVVLNELKLNISPGCSCHCDQPGWFRVCFANMSEQTLDVALERIRSFMARRIMTKKI