Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012829.t1 | XP_003603117.1 | 99.8 | 458 | 1 | 0 | 1 | 458 | 1 | 458 | 7.20E-252 | 879.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012829.t1 | Q9FMR9 | 90.2 | 458 | 45 | 0 | 1 | 458 | 1 | 458 | 4.2e-232 | 805.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012829.t1 | G7J7J7 | 99.8 | 458 | 1 | 0 | 1 | 458 | 1 | 458 | 5.2e-252 | 879.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene012829 | MS.gene09988 | PPI |
| MS.gene60517 | MS.gene012829 | PPI |
| MS.gene68085 | MS.gene012829 | PPI |
| MS.gene012829 | MS.gene08084 | PPI |
| MS.gene012829 | MS.gene037838 | PPI |
| MS.gene84545 | MS.gene012829 | PPI |
| MS.gene04094 | MS.gene012829 | PPI |
| MS.gene046177 | MS.gene012829 | PPI |
| MS.gene90906 | MS.gene012829 | PPI |
| MS.gene022650 | MS.gene012829 | PPI |
| MS.gene74260 | MS.gene012829 | PPI |
| MS.gene005792 | MS.gene012829 | PPI |
| MS.gene055437 | MS.gene012829 | PPI |
| MS.gene012829 | MS.gene04400 | PPI |
| MS.gene90097 | MS.gene012829 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012829.t1 | MTR_3g104080 | 99.782 | 458 | 1 | 0 | 1 | 458 | 1 | 458 | 0.0 | 929 |
| MS.gene012829.t1 | MTR_6g023370 | 91.648 | 455 | 16 | 2 | 4 | 458 | 1 | 433 | 0.0 | 827 |
| MS.gene012829.t1 | MTR_3g104080 | 100.000 | 360 | 0 | 0 | 99 | 458 | 1 | 360 | 0.0 | 731 |
| MS.gene012829.t1 | MTR_3g061640 | 44.421 | 466 | 232 | 7 | 1 | 457 | 1 | 448 | 1.64e-120 | 360 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012829.t1 | AT5G22330 | 90.175 | 458 | 45 | 0 | 1 | 458 | 1 | 458 | 0.0 | 850 |
| MS.gene012829.t1 | AT3G49830 | 42.048 | 459 | 254 | 5 | 1 | 457 | 1 | 449 | 3.51e-120 | 359 |
| MS.gene012829.t1 | AT5G67630 | 43.777 | 466 | 235 | 7 | 1 | 457 | 1 | 448 | 1.49e-119 | 358 |
Find 130 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAATTTGTTCACTTTATT+TGG | 0.114144 | 3.3:-85742993 | MS.gene012829:CDS |
| CCTTGCCAGCCATCTTCTTC+TGG | 0.261287 | 3.3:+85746966 | None:intergenic |
| GGCTATCGGTCTACGTATTA+AGG | 0.266184 | 3.3:-85746709 | MS.gene012829:CDS |
| GCTACTCACACTCACATTAA+AGG | 0.267682 | 3.3:-85747333 | MS.gene012829:CDS |
| AGTATCAGCCATGTGATAAT+TGG | 0.271135 | 3.3:-85746473 | MS.gene012829:CDS |
| AATGCAGTCTTTCCGGTTCC+AGG | 0.283045 | 3.3:+85746923 | None:intergenic |
| TGGCATACCTGTTGACCTAT+TGG | 0.318630 | 3.3:-85743501 | MS.gene012829:CDS |
| TGTTATACTCTCAGTTTCTT+CGG | 0.319337 | 3.3:+85746511 | None:intergenic |
| AAGTGCTAATGCAGTCTTTC+CGG | 0.320842 | 3.3:+85746916 | None:intergenic |
| TCTACGTATTAAGGAAAATA+AGG | 0.329275 | 3.3:-85746700 | MS.gene012829:CDS |
| AAAGAAGACCGAGGTTCTTA+TGG | 0.330990 | 3.3:-85746745 | MS.gene012829:CDS |
| GGATGTAACCCTACATGATT+TGG | 0.331586 | 3.3:-85744666 | MS.gene012829:CDS |
| TTTGTGGCAAAGATTACTAT+TGG | 0.345084 | 3.3:+85743889 | None:intergenic |
| GTTATACTCTCAGTTTCTTC+GGG | 0.346912 | 3.3:+85746512 | None:intergenic |
| TTAGCTTTCCTTGGGGAGAT+TGG | 0.351825 | 3.3:-85743278 | MS.gene012829:CDS |
| CGGTCCAGCTGAAATAATTC+AGG | 0.353377 | 3.3:-85743447 | MS.gene012829:intron |
| TCTTCCTAGGTTTCATCATC+TGG | 0.372923 | 3.3:+85744591 | None:intergenic |
| GTTGTCTCTGCCATTTATCT+TGG | 0.373972 | 3.3:+85743124 | None:intergenic |
| GTTGAGACAAGAAATTAATA+AGG | 0.382068 | 3.3:-85744552 | MS.gene012829:intron |
| GGGGTCCAACTTTAGTTGCT+TGG | 0.386390 | 3.3:+85746430 | None:intergenic |
| AGCGTTGTTGCCAAGATAAA+TGG | 0.390480 | 3.3:-85743134 | MS.gene012829:CDS |
| GAGGAAAGTTTAGCTTTCCT+TGG | 0.401642 | 3.3:-85743287 | MS.gene012829:CDS |
| TTTCTTGTGAACCTCTCCCT+TGG | 0.403331 | 3.3:+85746077 | None:intergenic |
| AGGAAAGTTTAGCTTTCCTT+GGG | 0.411802 | 3.3:-85743286 | MS.gene012829:CDS |
| TTGGGATATGTCAGGAGCTT+GGG | 0.414954 | 3.3:-85746895 | MS.gene012829:CDS |
| AGTGCATATTCCTCTATTTG+TGG | 0.417327 | 3.3:+85743873 | None:intergenic |
| GGCAAGGCACTCCTTCTCGC+CGG | 0.423804 | 3.3:-85746950 | MS.gene012829:CDS |
| GCAAGGCACTCCTTCTCGCC+GGG | 0.424279 | 3.3:-85746949 | MS.gene012829:CDS |
| TTCTTGTGAACCTCTCCCTT+GGG | 0.424676 | 3.3:+85746078 | None:intergenic |
| GAAGAAACTGAGAGTATAAC+AGG | 0.425557 | 3.3:-85746509 | MS.gene012829:CDS |
| TTTACCTGAATTATTTCAGC+TGG | 0.429224 | 3.3:+85743443 | None:intergenic |
| CAAATAGTGGGGCTGTGAAA+AGG | 0.431610 | 3.3:-85746164 | MS.gene012829:CDS |
| ACAGGTGCATATGCTAGATA+TGG | 0.434605 | 3.3:-85743956 | MS.gene012829:intron |
| CAACACCTTCATCGATATAT+CGG | 0.435831 | 3.3:+85744093 | None:intergenic |
| GGTGTTGCAGAACTTGTCCC+TGG | 0.444117 | 3.3:-85744077 | MS.gene012829:CDS |
| AATCGATCCAATAGGTCAAC+AGG | 0.450490 | 3.3:+85743494 | None:intergenic |
| TCAGTGATTTCCGTCTTCCT+AGG | 0.453246 | 3.3:+85744578 | None:intergenic |
| GAGAGTATAACAGGAGGTTA+TGG | 0.453991 | 3.3:-85746500 | MS.gene012829:CDS |
| CTCTAAAGCACGATTAAGAT+AGG | 0.457106 | 3.3:+85743924 | None:intergenic |
| GTAATCTTTGCCACAAATAG+AGG | 0.461084 | 3.3:-85743883 | MS.gene012829:CDS |
| ACACTGTGCAGGTAGCTGTC+GGG | 0.466455 | 3.3:-85746206 | MS.gene012829:intron |
| TTGCTGCTCTTGGAGAAGCT+TGG | 0.474441 | 3.3:+85742955 | None:intergenic |
| GCTGCCAACGCGCGACCTCA+AGG | 0.479841 | 3.3:-85744641 | MS.gene012829:CDS |
| GAACATACTCCTCAGCTTCA+AGG | 0.485334 | 3.3:+85746106 | None:intergenic |
| GTAGGTTCCATTCTGCCCAA+TGG | 0.486511 | 3.3:-85746796 | MS.gene012829:intron |
| TGATCACCAATCGATCCAAT+AGG | 0.490658 | 3.3:+85743486 | None:intergenic |
| TGAACCTCTCCCTTGGGAAG+TGG | 0.494094 | 3.3:+85746084 | None:intergenic |
| ATGCAGTCTTTCCGGTTCCA+GGG | 0.495649 | 3.3:+85746924 | None:intergenic |
| TTGGACAACGGACATCTCTA+AGG | 0.496930 | 3.3:-85743259 | MS.gene012829:intron |
| TGATGCCTTGATCAAGGAAA+AGG | 0.497216 | 3.3:-85746399 | MS.gene012829:intron |
| CATTAAAGGCCTAGGTCTTG+AGG | 0.497845 | 3.3:-85747319 | MS.gene012829:intron |
| AGGAACCAAGCAACTAAAGT+TGG | 0.499343 | 3.3:-85746435 | MS.gene012829:CDS |
| ATATATATTGAGGCAAATAG+TGG | 0.501344 | 3.3:-85746177 | MS.gene012829:CDS |
| AAATAGTGGGGCTGTGAAAA+GGG | 0.503086 | 3.3:-85746163 | MS.gene012829:CDS |
| GTGTTGCAGAACTTGTCCCT+GGG | 0.505714 | 3.3:-85744076 | MS.gene012829:CDS |
| TGCCAACGCGCGACCTCAAG+GGG | 0.510126 | 3.3:-85744639 | MS.gene012829:CDS |
| CTGCCAACGCGCGACCTCAA+GGG | 0.511088 | 3.3:-85744640 | MS.gene012829:CDS |
| GATATATGATGCCTTGATCA+AGG | 0.512614 | 3.3:-85746405 | MS.gene012829:CDS |
| AGTTTCTTCGGGAGAGAGCT+CGG | 0.512821 | 3.3:+85746523 | None:intergenic |
| GTTCCATTCTGCCCAATGGT+TGG | 0.513570 | 3.3:-85746792 | MS.gene012829:CDS |
| CTTGGGATATGTCAGGAGCT+TGG | 0.517088 | 3.3:-85746896 | MS.gene012829:CDS |
| AACAGGTATGCCATGAGGAC+TGG | 0.517649 | 3.3:+85743511 | None:intergenic |
| GAAAATAAGGAAGTATATGA+AGG | 0.518525 | 3.3:-85746687 | MS.gene012829:CDS |
| TATATATTGAGGCAAATAGT+GGG | 0.524529 | 3.3:-85746176 | MS.gene012829:CDS |
| ATTAGCACTTGGGATATGTC+AGG | 0.527405 | 3.3:-85746903 | MS.gene012829:CDS |
| ATAGAGGAATATGCACTGTA+AGG | 0.528143 | 3.3:-85743867 | MS.gene012829:intron |
| CCCACAAACCCAGAAGCAAA+AGG | 0.531554 | 3.3:+85747037 | None:intergenic |
| GAACCAACCATTGGGCAGAA+TGG | 0.533082 | 3.3:+85746789 | None:intergenic |
| ATACTTCTGAACCAACCATT+GGG | 0.533730 | 3.3:+85746781 | None:intergenic |
| CACACTGTGCAGGTAGCTGT+CGG | 0.538379 | 3.3:-85746207 | MS.gene012829:intron |
| TGGGTTTGTGGGACAAGCTG+AGG | 0.538586 | 3.3:-85747026 | MS.gene012829:CDS |
| ATCTTGGCAACAACGCTCGC+AGG | 0.542251 | 3.3:+85743140 | None:intergenic |
| CGGGGATGTTATATATATTG+AGG | 0.543594 | 3.3:-85746187 | MS.gene012829:CDS |
| GGAAAGACTGCATTAGCACT+TGG | 0.544549 | 3.3:-85746914 | MS.gene012829:CDS |
| GGAGAAGATGAAAATTGAAG+AGG | 0.545555 | 3.3:-85747385 | MS.gene012829:CDS |
| ATCAAGGCATCATATATCGT+GGG | 0.547921 | 3.3:+85746410 | None:intergenic |
| CCAGAAGAAGATGGCTGGCA+AGG | 0.548161 | 3.3:-85746966 | MS.gene012829:CDS |
| TGCAGTCTTTCCGGTTCCAG+GGG | 0.550380 | 3.3:+85746925 | None:intergenic |
| TATACTTCTGAACCAACCAT+TGG | 0.554977 | 3.3:+85746780 | None:intergenic |
| GTCAACCGATATATCGATGA+AGG | 0.558745 | 3.3:-85744098 | MS.gene012829:CDS |
| TGTTGACCTATTGGATCGAT+TGG | 0.564185 | 3.3:-85743492 | MS.gene012829:CDS |
| ATGTCAGGAGCTTGGGACCA+AGG | 0.564237 | 3.3:-85746888 | MS.gene012829:intron |
| CATGATACGCCAGAAGAAGA+TGG | 0.565068 | 3.3:-85746975 | MS.gene012829:CDS |
| TCGTCAATAAACAGAACCCC+AGG | 0.567100 | 3.3:+85744059 | None:intergenic |
| ATTGGATTGAAGACAGTGAA+AGG | 0.567859 | 3.3:-85746455 | MS.gene012829:CDS |
| CAAGTTCCTCCACTTGAGCT+CGG | 0.568699 | 3.3:+85743318 | None:intergenic |
| TGGCAGCATCCAAATCATGT+AGG | 0.570363 | 3.3:+85744657 | None:intergenic |
| TGGGGTTCTGTTTATTGACG+AGG | 0.574623 | 3.3:-85744057 | MS.gene012829:intron |
| ACTGATATGACCAGTCCTCA+TGG | 0.575171 | 3.3:-85743521 | MS.gene012829:CDS |
| GGCAGCATCCAAATCATGTA+GGG | 0.577366 | 3.3:+85744658 | None:intergenic |
| AATTATTTCAGCTGGACCGT+AGG | 0.577744 | 3.3:+85743451 | None:intergenic |
| TGTTCCACTTCCCAAGGGAG+AGG | 0.578685 | 3.3:-85746088 | MS.gene012829:CDS |
| GGAGGAACTTGCTGTGGATG+AGG | 0.580534 | 3.3:-85743306 | MS.gene012829:CDS |
| CACTGTGCAGGTAGCTGTCG+GGG | 0.583392 | 3.3:-85746205 | MS.gene012829:intron |
| ATACGCCAGAAGAAGATGGC+TGG | 0.584035 | 3.3:-85746971 | MS.gene012829:CDS |
| AAGAGAAGCGTGTGGCCTTG+TGG | 0.587053 | 3.3:-85747002 | MS.gene012829:CDS |
| GAAAGACTGCATTAGCACTT+GGG | 0.592181 | 3.3:-85746913 | MS.gene012829:CDS |
| TGAGTTTGACCTTGAAGCTG+AGG | 0.593567 | 3.3:-85746115 | MS.gene012829:CDS |
| AGTGGGGCTGTGAAAAGGGT+TGG | 0.593627 | 3.3:-85746159 | MS.gene012829:CDS |
| GGAGTATGTTCCACTTCCCA+AGG | 0.593628 | 3.3:-85746094 | MS.gene012829:CDS |
| CACACTCACATTAAAGGCCT+AGG | 0.594901 | 3.3:-85747327 | MS.gene012829:CDS |
| TCTAGCTATCCGAGCTCAAG+TGG | 0.596118 | 3.3:-85743327 | MS.gene012829:CDS |
| TGGGCCAGATGATGAAACCT+AGG | 0.605557 | 3.3:-85744595 | MS.gene012829:CDS |
| GATCAAGGCATCATATATCG+TGG | 0.609216 | 3.3:+85746409 | None:intergenic |
| GATGATGAAACCTAGGAAGA+CGG | 0.610580 | 3.3:-85744588 | MS.gene012829:CDS |
| ATCATTCGAACACAAACCTA+CGG | 0.612451 | 3.3:-85743467 | MS.gene012829:CDS |
| GAGAACAAACCTCAAGACCT+AGG | 0.613415 | 3.3:+85747310 | None:intergenic |
| GGCGTATCATGTCGACCACA+AGG | 0.614191 | 3.3:+85746987 | None:intergenic |
| TAAGGAAGTATATGAAGGCG+AGG | 0.615764 | 3.3:-85746682 | MS.gene012829:intron |
| TCAAGTGGAGGAACTTGCTG+TGG | 0.623698 | 3.3:-85743312 | MS.gene012829:CDS |
| CCAACGCGCGACCTCAAGGG+GGG | 0.640330 | 3.3:-85744637 | MS.gene012829:CDS |
| TCCGTTGTCCAATCTCCCCA+AGG | 0.641969 | 3.3:+85743270 | None:intergenic |
| TGTTGCAGAACTTGTCCCTG+GGG | 0.644580 | 3.3:-85744075 | MS.gene012829:CDS |
| AGCTATCCGAGCTCAAGTGG+AGG | 0.646357 | 3.3:-85743324 | MS.gene012829:CDS |
| CAGTAGCAAAAGCATCACTT+CGG | 0.650349 | 3.3:+85746136 | None:intergenic |
| GCCAACGCGCGACCTCAAGG+GGG | 0.651411 | 3.3:-85744638 | MS.gene012829:CDS |
| TCTTCAATCCAATTATCACA+TGG | 0.652745 | 3.3:+85746465 | None:intergenic |
| TGGCAGAGACAACATCTGCA+AGG | 0.661224 | 3.3:-85743114 | MS.gene012829:intron |
| TCCTTGGGGAGATTGGACAA+CGG | 0.674974 | 3.3:-85743271 | MS.gene012829:CDS |
| TGGTTCAGAAGTATACTCAA+CGG | 0.677153 | 3.3:-85746772 | MS.gene012829:CDS |
| GAGTATGTTCCACTTCCCAA+GGG | 0.680518 | 3.3:-85746093 | MS.gene012829:CDS |
| GCAGTCTTTCCGGTTCCAGG+GGG | 0.687329 | 3.3:+85746926 | None:intergenic |
| ATATATTGAGGCAAATAGTG+GGG | 0.693226 | 3.3:-85746175 | MS.gene012829:CDS |
| GGAAAGTTTAGCTTTCCTTG+GGG | 0.696347 | 3.3:-85743285 | MS.gene012829:CDS |
| TCAAGGCATCATATATCGTG+GGG | 0.702794 | 3.3:+85746411 | None:intergenic |
| CGTCAATAAACAGAACCCCA+GGG | 0.715606 | 3.3:+85744060 | None:intergenic |
| GCTGAGGCAAGAGAAGCGTG+TGG | 0.722369 | 3.3:-85747010 | MS.gene012829:CDS |
| GAAACTGAGAGTATAACAGG+AGG | 0.727490 | 3.3:-85746506 | MS.gene012829:CDS |
| AGGTCAACAGGTATGCCATG+AGG | 0.729642 | 3.3:+85743506 | None:intergenic |
| AACGGAAGTAAAGAAGACCG+AGG | 0.771401 | 3.3:-85746754 | MS.gene012829:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAAAATAAAGCTT+AGG | - | chr3.3:85744526-85744545 | MS.gene012829:intron | 10.0% |
| !! | CATGATAAAAATAATTAAAA+TGG | + | chr3.3:85746741-85746760 | None:intergenic | 10.0% |
| !! | TTCATTTATTAAAATGAAAT+TGG | - | chr3.3:85746090-85746109 | MS.gene012829:CDS | 10.0% |
| !!! | TTTGTTTTATACTTTTATTT+GGG | - | chr3.3:85744010-85744029 | MS.gene012829:intron | 10.0% |
| !!! | TTTTAAATCTATACAAATAT+TGG | - | chr3.3:85744056-85744075 | MS.gene012829:intron | 10.0% |
| !!! | TTTTGTTTTATACTTTTATT+TGG | - | chr3.3:85744009-85744028 | MS.gene012829:intron | 10.0% |
| !! | GAAAAAAACTTATTAAATTG+AGG | + | chr3.3:85743042-85743061 | None:intergenic | 15.0% |
| !!! | TCATTTTTAATTTATGTTTC+TGG | - | chr3.3:85745176-85745195 | MS.gene012829:intron | 15.0% |
| !!! | TTTATTTTTTTTGTTCTCAA+AGG | - | chr3.3:85745637-85745656 | MS.gene012829:intron | 15.0% |
| !! | AAAAGTTTCTTAACACAAAA+TGG | - | chr3.3:85746678-85746697 | MS.gene012829:intron | 20.0% |
| !! | AAACATTAAGCAAATTTCTA+TGG | - | chr3.3:85745504-85745523 | MS.gene012829:intron | 20.0% |
| !! | ACATCACATGAATATAATAA+TGG | + | chr3.3:85744304-85744323 | None:intergenic | 20.0% |
| !! | GTAAATTATATTTGAATCCT+TGG | - | chr3.3:85744345-85744364 | MS.gene012829:intron | 20.0% |
| !! | GTTTAAATAAAATTTGTCAG+AGG | - | chr3.3:85745551-85745570 | MS.gene012829:intron | 20.0% |
| !! | GTTTAATTGTTTAACTAGAA+GGG | - | chr3.3:85745819-85745838 | MS.gene012829:intron | 20.0% |
| !! | TATACATACACAAATAGTTA+TGG | + | chr3.3:85744621-85744640 | None:intergenic | 20.0% |
| !! | TGTTTAATTGTTTAACTAGA+AGG | - | chr3.3:85745818-85745837 | MS.gene012829:intron | 20.0% |
| !! | TTTAATTGTTTAACTAGAAG+GGG | - | chr3.3:85745820-85745839 | MS.gene012829:intron | 20.0% |
| !!! | AAGTTTTTTTGATGTGATTT+TGG | - | chr3.3:85743763-85743782 | MS.gene012829:intron | 20.0% |
| !!! | AATAAATTTTGATTGTCCTT+GGG | - | chr3.3:85746043-85746062 | MS.gene012829:intron | 20.0% |
| !!! | ATTCTTTTCTCTTTTTTGAA+AGG | - | chr3.3:85743963-85743982 | MS.gene012829:intron | 20.0% |
| !!! | CACTTTTTAAATTTCTGTTT+AGG | - | chr3.3:85745265-85745284 | MS.gene012829:intron | 20.0% |
| !!! | TAGAATACAAGAATGATTTT+TGG | + | chr3.3:85743469-85743488 | None:intergenic | 20.0% |
| !!! | TGAAATTTGTTCACTTTATT+TGG | - | chr3.3:85747331-85747350 | MS.gene012829:CDS | 20.0% |
| !!! | TTATGTTACCTTTTTTCATT+TGG | - | chr3.3:85745975-85745994 | MS.gene012829:intron | 20.0% |
| !!! | TTTTATACTTTTATTTGGGT+GGG | - | chr3.3:85744014-85744033 | MS.gene012829:intron | 20.0% |
| !!! | TTTTATTTTTTTCAGAGCTA+AGG | + | chr3.3:85744518-85744537 | None:intergenic | 20.0% |
| ! | AAAACCAGTGTTATAAATAG+CGG | + | chr3.3:85745429-85745448 | None:intergenic | 25.0% |
| ! | AAGAAATAAGCAAAAGGATT+TGG | + | chr3.3:85743170-85743189 | None:intergenic | 25.0% |
| ! | AATCTCATTTCTTAGATTGT+TGG | + | chr3.3:85746008-85746027 | None:intergenic | 25.0% |
| ! | AGCATTAGAACTTCATTAAA+TGG | + | chr3.3:85746343-85746362 | None:intergenic | 25.0% |
| ! | ATATATATTGAGGCAAATAG+TGG | - | chr3.3:85744147-85744166 | MS.gene012829:intron | 25.0% |
| ! | ATTAAGACCTCAAAAATGAT+GGG | + | chr3.3:85746568-85746587 | None:intergenic | 25.0% |
| ! | ATTTATTTATACCGCTTTGT+AGG | - | chr3.3:85743510-85743529 | MS.gene012829:CDS | 25.0% |
| ! | ATTTGTGTATGTATAGAGAA+TGG | - | chr3.3:85744593-85744612 | MS.gene012829:CDS | 25.0% |
| ! | CTATACCACTATTACATATA+GGG | - | chr3.3:85744877-85744896 | MS.gene012829:intron | 25.0% |
| ! | GAAATAATTCAGGTAAATGA+TGG | - | chr3.3:85746887-85746906 | MS.gene012829:intron | 25.0% |
| ! | GTTGAGACAAGAAATTAATA+AGG | - | chr3.3:85745772-85745791 | MS.gene012829:intron | 25.0% |
| ! | GTTTACAAAAATGCTTATGT+TGG | - | chr3.3:85746194-85746213 | MS.gene012829:CDS | 25.0% |
| ! | TAAATAAAATTTGTCAGAGG+AGG | - | chr3.3:85745554-85745573 | MS.gene012829:intron | 25.0% |
| ! | TAGCAACTCAATTAGTTAAA+GGG | + | chr3.3:85747282-85747301 | None:intergenic | 25.0% |
| ! | TATATATTGAGGCAAATAGT+GGG | - | chr3.3:85744148-85744167 | MS.gene012829:intron | 25.0% |
| ! | TATATGTAATAGTGGTATAG+CGG | + | chr3.3:85744877-85744896 | None:intergenic | 25.0% |
| ! | TCTACGTATTAAGGAAAATA+AGG | - | chr3.3:85743624-85743643 | MS.gene012829:intron | 25.0% |
| !! | AAAATAAAATAGTGCTGAGT+TGG | - | chr3.3:85745020-85745039 | MS.gene012829:intron | 25.0% |
| !! | AAAATTTTCCATAAGAACCT+CGG | + | chr3.3:85743590-85743609 | None:intergenic | 25.0% |
| !! | ATAAATTGCAGGCTTTAATT+AGG | + | chr3.3:85746315-85746334 | None:intergenic | 25.0% |
| !! | CAAGATATTTTGTCTCTTAT+GGG | - | chr3.3:85745710-85745729 | MS.gene012829:intron | 25.0% |
| !! | GAAAATAAGGAAGTATATGA+AGG | - | chr3.3:85743637-85743656 | MS.gene012829:intron | 25.0% |
| !! | GTTTTCTTCCAAATGAAAAA+AGG | + | chr3.3:85745986-85746005 | None:intergenic | 25.0% |
| !! | TAAATTGCAGGCTTTAATTA+GGG | + | chr3.3:85746314-85746333 | None:intergenic | 25.0% |
| !! | TATTTCTCATATCGGATTTT+TGG | - | chr3.3:85745382-85745401 | MS.gene012829:intron | 25.0% |
| !! | TTCTTATGGAAAATTTTCGA+CGG | - | chr3.3:85743593-85743612 | MS.gene012829:intron | 25.0% |
| !!! | AGCTTAGGATATAATTTGTT+TGG | - | chr3.3:85744541-85744560 | MS.gene012829:intron | 25.0% |
| !!! | ATTGACTGTTTTTTTTACAG+AGG | - | chr3.3:85746779-85746798 | MS.gene012829:CDS | 25.0% |
| !!! | CAATAAATTTTGATTGTCCT+TGG | - | chr3.3:85746042-85746061 | MS.gene012829:intron | 25.0% |
| !!! | GCTTAGGATATAATTTGTTT+GGG | - | chr3.3:85744542-85744561 | MS.gene012829:intron | 25.0% |
| !!! | GTTTTATACTTTTATTTGGG+TGG | - | chr3.3:85744013-85744032 | MS.gene012829:intron | 25.0% |
| !!! | GTTTTGTTTGAAGTTGATAA+TGG | - | chr3.3:85744439-85744458 | MS.gene012829:intron | 25.0% |
| !!! | TATGTGTTGTTTATCATATC+AGG | - | chr3.3:85747140-85747159 | MS.gene012829:intron | 25.0% |
| !!! | TTGACTGTTTTTTTTACAGA+GGG | - | chr3.3:85746780-85746799 | MS.gene012829:CDS | 25.0% |
| AAAATATGTAGCAGACAAAG+TGG | + | chr3.3:85743735-85743754 | None:intergenic | 30.0% | |
| AAATCCGATATGAGAAATAG+CGG | + | chr3.3:85745381-85745400 | None:intergenic | 30.0% | |
| AAATGGATGCAATAAATTGC+AGG | + | chr3.3:85746326-85746345 | None:intergenic | 30.0% | |
| AAGAATAACTATTATGCCCA+AGG | + | chr3.3:85746062-85746081 | None:intergenic | 30.0% | |
| ACATACACAAATAGTTGTAC+CGG | + | chr3.3:85744585-85744604 | None:intergenic | 30.0% | |
| ACATATAAGTCACATACGAA+AGG | + | chr3.3:85747125-85747144 | None:intergenic | 30.0% | |
| ACCTTACTAGAAGAAAAGTA+CGG | + | chr3.3:85745533-85745552 | None:intergenic | 30.0% | |
| ACTAAATAGCATCTTCATGA+TGG | + | chr3.3:85745954-85745973 | None:intergenic | 30.0% | |
| ACTTGTGAACAAAAAAGCAA+AGG | - | chr3.3:85746125-85746144 | MS.gene012829:CDS | 30.0% | |
| AGCAAAGGGTAAAAAAATGT+AGG | - | chr3.3:85746140-85746159 | MS.gene012829:CDS | 30.0% | |
| ATATATTGAGGCAAATAGTG+GGG | - | chr3.3:85744149-85744168 | MS.gene012829:intron | 30.0% | |
| ATGAAACCTGATTCATAGTA+CGG | + | chr3.3:85744378-85744397 | None:intergenic | 30.0% | |
| ATGCAAATAAGTGTGTATGT+TGG | + | chr3.3:85746971-85746990 | None:intergenic | 30.0% | |
| CAAATCCCTATATGTAATAG+TGG | + | chr3.3:85744885-85744904 | None:intergenic | 30.0% | |
| CAAGAAAAAAGAGATTGTTC+AGG | - | chr3.3:85744263-85744282 | MS.gene012829:intron | 30.0% | |
| CACTATTACATATAGGGATT+TGG | - | chr3.3:85744883-85744902 | MS.gene012829:intron | 30.0% | |
| CATAGCAAGAAATAAGCAAA+AGG | + | chr3.3:85743176-85743195 | None:intergenic | 30.0% | |
| CATATAGATGATAACAACGT+AGG | - | chr3.3:85744465-85744484 | MS.gene012829:intron | 30.0% | |
| CTCATTTGGATCTATTGTTA+AGG | + | chr3.3:85743103-85743122 | None:intergenic | 30.0% | |
| CTTGTGAACAAAAAAGCAAA+GGG | - | chr3.3:85746126-85746145 | MS.gene012829:CDS | 30.0% | |
| GATGGAAAACTTTCTTACAA+TGG | + | chr3.3:85744729-85744748 | None:intergenic | 30.0% | |
| GATTAAGACCTCAAAAATGA+TGG | + | chr3.3:85746569-85746588 | None:intergenic | 30.0% | |
| GCTATACCACTATTACATAT+AGG | - | chr3.3:85744876-85744895 | MS.gene012829:intron | 30.0% | |
| GCTATTTGAAAGAAGGTTAA+GGG | + | chr3.3:85746913-85746932 | None:intergenic | 30.0% | |
| GGAGTGATATAAAAACAAGA+AGG | - | chr3.3:85746161-85746180 | MS.gene012829:CDS | 30.0% | |
| GTAGCAACTCAATTAGTTAA+AGG | + | chr3.3:85747283-85747302 | None:intergenic | 30.0% | |
| TCTTACAATGGTCAAATATC+AGG | + | chr3.3:85744717-85744736 | None:intergenic | 30.0% | |
| TCTTCAATCCAATTATCACA+TGG | + | chr3.3:85743862-85743881 | None:intergenic | 30.0% | |
| TGAACTGGAAACAATCAAAA+TGG | + | chr3.3:85744654-85744673 | None:intergenic | 30.0% | |
| TGTTATACTCTCAGTTTCTT+CGG | + | chr3.3:85743816-85743835 | None:intergenic | 30.0% | |
| TTTACCTGAATTATTTCAGC+TGG | + | chr3.3:85746884-85746903 | None:intergenic | 30.0% | |
| TTTGTGGCAAAGATTACTAT+TGG | + | chr3.3:85746438-85746457 | None:intergenic | 30.0% | |
| ! | AAGTTCTAATGCTTCTTTAC+AGG | - | chr3.3:85746350-85746369 | MS.gene012829:intron | 30.0% |
| ! | ATTCTACAGCTTTGATACAT+GGG | - | chr3.3:85744087-85744106 | MS.gene012829:CDS | 30.0% |
| ! | GCAAGATATTTTGTCTCTTA+TGG | - | chr3.3:85745709-85745728 | MS.gene012829:intron | 30.0% |
| ! | TAGAGAATTTAAGCATTGCA+AGG | - | chr3.3:85744690-85744709 | MS.gene012829:intron | 30.0% |
| ! | TATGCCAAACATGCTAATTT+TGG | - | chr3.3:85746940-85746959 | MS.gene012829:CDS | 30.0% |
| ! | TCTCTGTTTTCATGATTAGT+TGG | - | chr3.3:85746650-85746669 | MS.gene012829:intron | 30.0% |
| ! | TCTTATGGAAAATTTTCGAC+GGG | - | chr3.3:85743594-85743613 | MS.gene012829:intron | 30.0% |
| ! | TGATTTTGCAGTATCTCAAT+GGG | - | chr3.3:85746622-85746641 | MS.gene012829:intron | 30.0% |
| ! | TGTATTAAGTTTTGCTGAAG+TGG | - | chr3.3:85746499-85746518 | MS.gene012829:CDS | 30.0% |
| ! | TTTGAGGTCTTAATCTTCTT+CGG | - | chr3.3:85746574-85746593 | MS.gene012829:intron | 30.0% |
| !! | AACGTAGGATATAGTTTGTT+TGG | - | chr3.3:85744480-85744499 | MS.gene012829:intron | 30.0% |
| !! | ACGTAGGATATAGTTTGTTT+GGG | - | chr3.3:85744481-85744500 | MS.gene012829:intron | 30.0% |
| !! | CAAAGGCTCTGAATTAAAAT+TGG | - | chr3.3:85744817-85744836 | MS.gene012829:intron | 30.0% |
| !! | CTCTGTTTTCATGATTAGTT+GGG | - | chr3.3:85746651-85746670 | MS.gene012829:intron | 30.0% |
| !! | GAAAATATTTTTGCAGAGTC+TGG | + | chr3.3:85745581-85745600 | None:intergenic | 30.0% |
| !! | GTTTGGTTATTGTTTTGTTC+AGG | - | chr3.3:85743247-85743266 | MS.gene012829:intron | 30.0% |
| !! | TCTGTTTTCATGATTAGTTG+GGG | - | chr3.3:85746652-85746671 | MS.gene012829:intron | 30.0% |
| !!! | ACTGTTTTGAAATTTGTAGG+CGG | - | chr3.3:85747301-85747320 | MS.gene012829:intron | 30.0% |
| !!! | ATTTTAATTCAGAGCCTTTG+CGG | + | chr3.3:85744817-85744836 | None:intergenic | 30.0% |
| !!! | CAACTACTTGTTTTTTGGTT+TGG | - | chr3.3:85743230-85743249 | MS.gene012829:intron | 30.0% |
| !!! | GCTAACAACTACTTGTTTTT+TGG | - | chr3.3:85743225-85743244 | MS.gene012829:intron | 30.0% |
| !!! | GCTACTGTTTTGAAATTTGT+AGG | - | chr3.3:85747298-85747317 | MS.gene012829:intron | 30.0% |
| !!! | GGTAACATTTTGATTGTTTC+CGG | - | chr3.3:85744563-85744582 | MS.gene012829:CDS | 30.0% |
| !!! | TATTTTTTTCAGAGCTAAGG+AGG | + | chr3.3:85744515-85744534 | None:intergenic | 30.0% |
| !!! | TGATTTTTGGTACAAAACCT+TGG | + | chr3.3:85743456-85743475 | None:intergenic | 30.0% |
| AAAAGTCACCACTATTGCAA+TGG | + | chr3.3:85744951-85744970 | None:intergenic | 35.0% | |
| ACACAAAATCTGTGCTCATT+TGG | + | chr3.3:85743117-85743136 | None:intergenic | 35.0% | |
| ACAGTTGTTGTCATGTAATC+AGG | - | chr3.3:85745861-85745880 | MS.gene012829:intron | 35.0% | |
| AGTATCAGCCATGTGATAAT+TGG | - | chr3.3:85743851-85743870 | MS.gene012829:intron | 35.0% | |
| AGTGCATATTCCTCTATTTG+TGG | + | chr3.3:85746454-85746473 | None:intergenic | 35.0% | |
| ATAAGTTCAAACACCTGGTA+AGG | - | chr3.3:85745886-85745905 | MS.gene012829:intron | 35.0% | |
| ATACTTCTGAACCAACCATT+GGG | + | chr3.3:85743546-85743565 | None:intergenic | 35.0% | |
| ATAGAGGAATATGCACTGTA+AGG | - | chr3.3:85746457-85746476 | MS.gene012829:CDS | 35.0% | |
| ATCATTCGAACACAAACCTA+CGG | - | chr3.3:85746857-85746876 | MS.gene012829:intron | 35.0% | |
| ATGAAGTGATGAGAGAAGAT+GGG | + | chr3.3:85745122-85745141 | None:intergenic | 35.0% | |
| ATTGGATTGAAGACAGTGAA+AGG | - | chr3.3:85743869-85743888 | MS.gene012829:CDS | 35.0% | |
| CAACACCTTCATCGATATAT+CGG | + | chr3.3:85746234-85746253 | None:intergenic | 35.0% | |
| CAACTGTGACTGATATGTAA+AGG | + | chr3.3:85745848-85745867 | None:intergenic | 35.0% | |
| CAATCCGCTATTTATAACAC+TGG | - | chr3.3:85745422-85745441 | MS.gene012829:intron | 35.0% | |
| CATTGAGATACTGCAAAATC+AGG | + | chr3.3:85746623-85746642 | None:intergenic | 35.0% | |
| CATTTACTTCAACCACTTTG+CGG | - | chr3.3:85745329-85745348 | MS.gene012829:intron | 35.0% | |
| CGGGGATGTTATATATATTG+AGG | - | chr3.3:85744137-85744156 | MS.gene012829:intron | 35.0% | |
| CTTGTTAAAACTGGGAATCT+GGG | - | chr3.3:85743683-85743702 | MS.gene012829:intron | 35.0% | |
| GATAAACCGTACTATGAATC+AGG | - | chr3.3:85744369-85744388 | MS.gene012829:intron | 35.0% | |
| GATATATGATGCCTTGATCA+AGG | - | chr3.3:85743919-85743938 | MS.gene012829:CDS | 35.0% | |
| GCATACACAAATAGTTGAAC+TGG | + | chr3.3:85744669-85744688 | None:intergenic | 35.0% | |
| GCATCCAAAATTAGCATGTT+TGG | + | chr3.3:85746947-85746966 | None:intergenic | 35.0% | |
| GGAGAAGATGAAAATTGAAG+AGG | - | chr3.3:85742939-85742958 | MS.gene012829:CDS | 35.0% | |
| GGCTATTTGAAAGAAGGTTA+AGG | + | chr3.3:85746914-85746933 | None:intergenic | 35.0% | |
| GTAATCTTTGCCACAAATAG+AGG | - | chr3.3:85746441-85746460 | MS.gene012829:CDS | 35.0% | |
| GTGATTCCCTTGTTAAAACT+GGG | - | chr3.3:85743675-85743694 | MS.gene012829:intron | 35.0% | |
| GTTATACTCTCAGTTTCTTC+GGG | + | chr3.3:85743815-85743834 | None:intergenic | 35.0% | |
| TATACTTCTGAACCAACCAT+TGG | + | chr3.3:85743547-85743566 | None:intergenic | 35.0% | |
| TATGAAGTGATGAGAGAAGA+TGG | + | chr3.3:85745123-85745142 | None:intergenic | 35.0% | |
| TGTGATTCCCTTGTTAAAAC+TGG | - | chr3.3:85743674-85743693 | MS.gene012829:intron | 35.0% | |
| ! | ACCGTACTTTTCTTCTAGTA+AGG | - | chr3.3:85745529-85745548 | MS.gene012829:intron | 35.0% |
| ! | ATCAAGGCATCATATATCGT+GGG | + | chr3.3:85743917-85743936 | None:intergenic | 35.0% |
| ! | CATTCTACAGCTTTGATACA+TGG | - | chr3.3:85744086-85744105 | MS.gene012829:CDS | 35.0% |
| ! | CTGATTTTGCAGTATCTCAA+TGG | - | chr3.3:85746621-85746640 | MS.gene012829:intron | 35.0% |
| ! | GAAGAAACTGAGAGTATAAC+AGG | - | chr3.3:85743815-85743834 | MS.gene012829:intron | 35.0% |
| ! | GATTTTGCAGTATCTCAATG+GGG | - | chr3.3:85746623-85746642 | MS.gene012829:intron | 35.0% |
| ! | TCTTTTCGTGAAAGATGATG+AGG | - | chr3.3:85745480-85745499 | MS.gene012829:intron | 35.0% |
| ! | TGGTTCAGAAGTATACTCAA+CGG | - | chr3.3:85743552-85743571 | MS.gene012829:intron | 35.0% |
| ! | TGTATTTTTCTTGCTGCTCT+TGG | + | chr3.3:85747382-85747401 | None:intergenic | 35.0% |
| !! | AAAATGCTTATGTTGGTGAC+AGG | - | chr3.3:85746201-85746220 | MS.gene012829:intron | 35.0% |
| !! | AGGAAAGTTTAGCTTTCCTT+GGG | - | chr3.3:85747038-85747057 | MS.gene012829:CDS | 35.0% |
| !! | CAGATTCCCAGTTTTAACAA+GGG | + | chr3.3:85743684-85743703 | None:intergenic | 35.0% |
| !! | CGTAGGATATAGTTTGTTTG+GGG | - | chr3.3:85744482-85744501 | MS.gene012829:intron | 35.0% |
| !! | CTCTAAAGCACGATTAAGAT+AGG | + | chr3.3:85746403-85746422 | None:intergenic | 35.0% |
| !! | GTGTTATAAATAGCGGATTG+CGG | + | chr3.3:85745422-85745441 | None:intergenic | 35.0% |
| !! | TATTGTTTTGTTCAGGTCAG+TGG | - | chr3.3:85743254-85743273 | MS.gene012829:intron | 35.0% |
| !! | TCTAGACACTTGCTATATAC+TGG | - | chr3.3:85745599-85745618 | MS.gene012829:intron | 35.0% |
| AAAGAAGACCGAGGTTCTTA+TGG | - | chr3.3:85743579-85743598 | MS.gene012829:intron | 40.0% | |
| AAGTGCTAATGCAGTCTTTC+CGG | + | chr3.3:85743411-85743430 | None:intergenic | 40.0% | |
| AATCGATCCAATAGGTCAAC+AGG | + | chr3.3:85746833-85746852 | None:intergenic | 40.0% | |
| AATTATTTCAGCTGGACCGT+AGG | + | chr3.3:85746876-85746895 | None:intergenic | 40.0% | |
| ACAGGTGCATATGCTAGATA+TGG | - | chr3.3:85746368-85746387 | MS.gene012829:intron | 40.0% | |
| ACATAAAGTCTGCCCATTGT+GGG | + | chr3.3:85745926-85745945 | None:intergenic | 40.0% | |
| ACTGCAAAATCAGGTCTTCT+AGG | + | chr3.3:85746614-85746633 | None:intergenic | 40.0% | |
| AGCAGACAAAGTGGTAACAA+GGG | + | chr3.3:85743726-85743745 | None:intergenic | 40.0% | |
| AGCGTTGTTGCCAAGATAAA+TGG | - | chr3.3:85747190-85747209 | MS.gene012829:intron | 40.0% | |
| AGGAACCAAGCAACTAAAGT+TGG | - | chr3.3:85743889-85743908 | MS.gene012829:CDS | 40.0% | |
| AGGTCATAAGTTCAAACACC+TGG | - | chr3.3:85745881-85745900 | MS.gene012829:intron | 40.0% | |
| ATTAGCACTTGGGATATGTC+AGG | - | chr3.3:85743421-85743440 | MS.gene012829:intron | 40.0% | |
| CCTTGTTAAAACTGGGAATC+TGG | - | chr3.3:85743682-85743701 | MS.gene012829:intron | 40.0% | |
| CTTTGCGGAGTAACATCTTA+GGG | + | chr3.3:85744802-85744821 | None:intergenic | 40.0% | |
| GAAAGACTGCATTAGCACTT+GGG | - | chr3.3:85743411-85743430 | MS.gene012829:intron | 40.0% | |
| GATGATGAAACCTAGGAAGA+CGG | - | chr3.3:85745736-85745755 | MS.gene012829:intron | 40.0% | |
| GCTACTCACACTCACATTAA+AGG | - | chr3.3:85742991-85743010 | MS.gene012829:CDS | 40.0% | |
| GGATGTAACCCTACATGATT+TGG | - | chr3.3:85745658-85745677 | MS.gene012829:intron | 40.0% | |
| GTCAACCGATATATCGATGA+AGG | - | chr3.3:85746226-85746245 | MS.gene012829:intron | 40.0% | |
| TAGCAGACAAAGTGGTAACA+AGG | + | chr3.3:85743727-85743746 | None:intergenic | 40.0% | |
| TCTTCCTAGGTTTCATCATC+TGG | + | chr3.3:85745736-85745755 | None:intergenic | 40.0% | |
| TGAAGTGATGAGAGAAGATG+GGG | + | chr3.3:85745121-85745140 | None:intergenic | 40.0% | |
| TGATCACCAATCGATCCAAT+AGG | + | chr3.3:85746841-85746860 | None:intergenic | 40.0% | |
| TGATGCCTTGATCAAGGAAA+AGG | - | chr3.3:85743925-85743944 | MS.gene012829:CDS | 40.0% | |
| TGTTGACCTATTGGATCGAT+TGG | - | chr3.3:85746832-85746851 | MS.gene012829:intron | 40.0% | |
| TTCTGCTACCATTGCAATAG+TGG | - | chr3.3:85744940-85744959 | MS.gene012829:intron | 40.0% | |
| ! | AAAGCAGTTCCTTTTGCTTC+TGG | - | chr3.3:85743278-85743297 | MS.gene012829:CDS | 40.0% |
| ! | AAATAGTGGGGCTGTGAAAA+GGG | - | chr3.3:85744161-85744180 | MS.gene012829:intron | 40.0% |
| ! | AAGCAGTTCCTTTTGCTTCT+GGG | - | chr3.3:85743279-85743298 | MS.gene012829:CDS | 40.0% |
| ! | GAAACTGAGAGTATAACAGG+AGG | - | chr3.3:85743818-85743837 | MS.gene012829:intron | 40.0% |
| ! | GAGAGTATAACAGGAGGTTA+TGG | - | chr3.3:85743824-85743843 | MS.gene012829:intron | 40.0% |
| ! | GATCAAGGCATCATATATCG+TGG | + | chr3.3:85743918-85743937 | None:intergenic | 40.0% |
| ! | GTTGTCTCTGCCATTTATCT+TGG | + | chr3.3:85747203-85747222 | None:intergenic | 40.0% |
| ! | TAAGGAAGTATATGAAGGCG+AGG | - | chr3.3:85743642-85743661 | MS.gene012829:intron | 40.0% |
| ! | TCAAGGCATCATATATCGTG+GGG | + | chr3.3:85743916-85743935 | None:intergenic | 40.0% |
| ! | TTACACATGCCTGTTTGTTG+CGG | - | chr3.3:85743138-85743157 | MS.gene012829:CDS | 40.0% |
| !! | AAACTGGGAATCTGGGATTT+TGG | - | chr3.3:85743690-85743709 | MS.gene012829:intron | 40.0% |
| !! | ACTTTTATTTGGGTGGGAAC+TGG | - | chr3.3:85744020-85744039 | MS.gene012829:intron | 40.0% |
| !! | ATTCTAAAGCAGACCCACAA+TGG | - | chr3.3:85745910-85745929 | MS.gene012829:intron | 40.0% |
| !! | CAGTAGCAAAAGCATCACTT+CGG | + | chr3.3:85744191-85744210 | None:intergenic | 40.0% |
| !! | CCAGATTCCCAGTTTTAACA+AGG | + | chr3.3:85743685-85743704 | None:intergenic | 40.0% |
| !! | CTAGTAGCCCATCATTTTTG+AGG | - | chr3.3:85746558-85746577 | MS.gene012829:intron | 40.0% |
| !! | CTGTCCGCTATTTCTCATAT+CGG | - | chr3.3:85745374-85745393 | MS.gene012829:intron | 40.0% |
| !! | CTTTTATTTGGGTGGGAACT+GGG | - | chr3.3:85744021-85744040 | MS.gene012829:intron | 40.0% |
| !! | GAGGAAAGTTTAGCTTTCCT+TGG | - | chr3.3:85747037-85747056 | MS.gene012829:CDS | 40.0% |
| !! | GGAAAGTTTAGCTTTCCTTG+GGG | - | chr3.3:85747039-85747058 | MS.gene012829:CDS | 40.0% |
| !! | TAGCGGATTGCGGAAAATAA+CGG | + | chr3.3:85745412-85745431 | None:intergenic | 40.0% |
| !! | TTCTAAAGCAGACCCACAAT+GGG | - | chr3.3:85745911-85745930 | MS.gene012829:intron | 40.0% |
| !!! | GAAAATTTTCGACGGGCTAT+CGG | - | chr3.3:85743601-85743620 | MS.gene012829:intron | 40.0% |
| AAAATATCTTGCCCCCCTTG+AGG | + | chr3.3:85745701-85745720 | None:intergenic | 45.0% | |
| AACGGAAGTAAAGAAGACCG+AGG | - | chr3.3:85743570-85743589 | MS.gene012829:intron | 45.0% | |
| ACAGCATAGCGCGATATTAG+CGG | + | chr3.3:85745358-85745377 | None:intergenic | 45.0% | |
| ACTGATATGACCAGTCCTCA+TGG | - | chr3.3:85746803-85746822 | MS.gene012829:intron | 45.0% | |
| AGTGGTAACAAGGGAATCAC+AGG | + | chr3.3:85743717-85743736 | None:intergenic | 45.0% | |
| ATGAGAGGTTACCTAGGTAG+TGG | + | chr3.3:85745079-85745098 | None:intergenic | 45.0% | |
| CACAATGGGCAGACTTTATG+TGG | - | chr3.3:85745925-85745944 | MS.gene012829:intron | 45.0% | |
| CACACTCACATTAAAGGCCT+AGG | - | chr3.3:85742997-85743016 | MS.gene012829:CDS | 45.0% | |
| CACATAAAGTCTGCCCATTG+TGG | + | chr3.3:85745927-85745946 | None:intergenic | 45.0% | |
| CATAGTACGGTTTATCGCCA+AGG | + | chr3.3:85744365-85744384 | None:intergenic | 45.0% | |
| CATGATACGCCAGAAGAAGA+TGG | - | chr3.3:85743349-85743368 | MS.gene012829:intron | 45.0% | |
| CATTAAAGGCCTAGGTCTTG+AGG | - | chr3.3:85743005-85743024 | MS.gene012829:CDS | 45.0% | |
| CCTAAGATGTTACTCCGCAA+AGG | - | chr3.3:85744800-85744819 | MS.gene012829:intron | 45.0% | |
| CCTTGATCAAGGAAAAGGTG+CGG | - | chr3.3:85743930-85743949 | MS.gene012829:CDS | 45.0% | |
| CCTTTGCGGAGTAACATCTT+AGG | + | chr3.3:85744803-85744822 | None:intergenic | 45.0% | |
| CGGTCCAGCTGAAATAATTC+AGG | - | chr3.3:85746877-85746896 | MS.gene012829:intron | 45.0% | |
| CGTCAATAAACAGAACCCCA+GGG | + | chr3.3:85746267-85746286 | None:intergenic | 45.0% | |
| GAACATACTCCTCAGCTTCA+AGG | + | chr3.3:85744221-85744240 | None:intergenic | 45.0% | |
| GAGAACAAACCTCAAGACCT+AGG | + | chr3.3:85743017-85743036 | None:intergenic | 45.0% | |
| GAGTATGTTCCACTTCCCAA+GGG | - | chr3.3:85744231-85744250 | MS.gene012829:intron | 45.0% | |
| GCAGAATCGCAATAGCGTAT+CGG | + | chr3.3:85744926-85744945 | None:intergenic | 45.0% | |
| GCAGAATGGAACCTACAAAG+CGG | + | chr3.3:85743524-85743543 | None:intergenic | 45.0% | |
| GGAAAGACTGCATTAGCACT+TGG | - | chr3.3:85743410-85743429 | MS.gene012829:intron | 45.0% | |
| GGCAGCATCCAAATCATGTA+GGG | + | chr3.3:85745669-85745688 | None:intergenic | 45.0% | |
| GGCTATCGGTCTACGTATTA+AGG | - | chr3.3:85743615-85743634 | MS.gene012829:intron | 45.0% | |
| GTCTAGCAGAGGAACTAGTT+TGG | - | chr3.3:85744758-85744777 | MS.gene012829:intron | 45.0% | |
| TCAGTGATGAGAGGTTACCT+AGG | + | chr3.3:85745085-85745104 | None:intergenic | 45.0% | |
| TCAGTGATTTCCGTCTTCCT+AGG | + | chr3.3:85745749-85745768 | None:intergenic | 45.0% | |
| TCGTCAATAAACAGAACCCC+AGG | + | chr3.3:85746268-85746287 | None:intergenic | 45.0% | |
| TGAGAGGTTACCTAGGTAGT+GGG | + | chr3.3:85745078-85745097 | None:intergenic | 45.0% | |
| TGAGTTTGACCTTGAAGCTG+AGG | - | chr3.3:85744209-85744228 | MS.gene012829:intron | 45.0% | |
| TGGCAGCATCCAAATCATGT+AGG | + | chr3.3:85745670-85745689 | None:intergenic | 45.0% | |
| TGGCATACCTGTTGACCTAT+TGG | - | chr3.3:85746823-85746842 | MS.gene012829:intron | 45.0% | |
| TGGGGTTCTGTTTATTGACG+AGG | - | chr3.3:85746267-85746286 | MS.gene012829:intron | 45.0% | |
| TTCTTGTGAACCTCTCCCTT+GGG | + | chr3.3:85744249-85744268 | None:intergenic | 45.0% | |
| TTGGACAACGGACATCTCTA+AGG | - | chr3.3:85747065-85747084 | MS.gene012829:intron | 45.0% | |
| TTGGGATATGTCAGGAGCTT+GGG | - | chr3.3:85743429-85743448 | MS.gene012829:intron | 45.0% | |
| TTTCTTGTGAACCTCTCCCT+TGG | + | chr3.3:85744250-85744269 | None:intergenic | 45.0% | |
| ! | CAAATAGTGGGGCTGTGAAA+AGG | - | chr3.3:85744160-85744179 | MS.gene012829:intron | 45.0% |
| ! | CCTTTTGCTTCTGGGTTTGT+GGG | - | chr3.3:85743287-85743306 | MS.gene012829:CDS | 45.0% |
| ! | TACACATGCCTGTTTGTTGC+GGG | - | chr3.3:85743139-85743158 | MS.gene012829:CDS | 45.0% |
| ! | TAGCAGAGGAACTAGTTTGG+TGG | - | chr3.3:85744761-85744780 | MS.gene012829:intron | 45.0% |
| ! | TCCTTTTGCTTCTGGGTTTG+TGG | - | chr3.3:85743286-85743305 | MS.gene012829:CDS | 45.0% |
| ! | TTAGCTTTCCTTGGGGAGAT+TGG | - | chr3.3:85747046-85747065 | MS.gene012829:CDS | 45.0% |
| !! | CTGCTTTAGAATGCCTTACC+AGG | + | chr3.3:85745902-85745921 | None:intergenic | 45.0% |
| !! | TACCTAGGTAGTGGGGTTTA+GGG | + | chr3.3:85745070-85745089 | None:intergenic | 45.0% |
| !! | TGTGATTTTGGTCCTGTGCA+AGG | - | chr3.3:85743775-85743794 | MS.gene012829:intron | 45.0% |
| !! | TTACCTAGGTAGTGGGGTTT+AGG | + | chr3.3:85745071-85745090 | None:intergenic | 45.0% |
| !! | ATGATAAAAATAATTAAAAT+GGG | + | chr3.3:85746740-85746759 | None:intergenic | 5.0% |
| AACAGGTATGCCATGAGGAC+TGG | + | chr3.3:85746816-85746835 | None:intergenic | 50.0% | |
| AATGCAGTCTTTCCGGTTCC+AGG | + | chr3.3:85743404-85743423 | None:intergenic | 50.0% | |
| AGAGGAGGTTCAGTGATGAG+AGG | + | chr3.3:85745094-85745113 | None:intergenic | 50.0% | |
| AGGTCAACAGGTATGCCATG+AGG | + | chr3.3:85746821-85746840 | None:intergenic | 50.0% | |
| AGTGATGAGAGAAGATGGGG+AGG | + | chr3.3:85745118-85745137 | None:intergenic | 50.0% | |
| AGTTTCTTCGGGAGAGAGCT+CGG | + | chr3.3:85743804-85743823 | None:intergenic | 50.0% | |
| ATACGCCAGAAGAAGATGGC+TGG | - | chr3.3:85743353-85743372 | MS.gene012829:intron | 50.0% | |
| ATGCAGTCTTTCCGGTTCCA+GGG | + | chr3.3:85743403-85743422 | None:intergenic | 50.0% | |
| CAAGTTCCTCCACTTGAGCT+CGG | + | chr3.3:85747009-85747028 | None:intergenic | 50.0% | |
| CCCACAAACCCAGAAGCAAA+AGG | + | chr3.3:85743290-85743309 | None:intergenic | 50.0% | |
| CTGCTAGACTGCTATGCAGA+TGG | + | chr3.3:85744747-85744766 | None:intergenic | 50.0% | |
| CTTGGGATATGTCAGGAGCT+TGG | - | chr3.3:85743428-85743447 | MS.gene012829:intron | 50.0% | |
| GAACCAACCATTGGGCAGAA+TGG | + | chr3.3:85743538-85743557 | None:intergenic | 50.0% | |
| GAGAGGTTACCTAGGTAGTG+GGG | + | chr3.3:85745077-85745096 | None:intergenic | 50.0% | |
| GGAGTATGTTCCACTTCCCA+AGG | - | chr3.3:85744230-85744249 | MS.gene012829:intron | 50.0% | |
| GGGATTTATGCACACTGTGC+AGG | - | chr3.3:85744107-85744126 | MS.gene012829:intron | 50.0% | |
| GGGGTCCAACTTTAGTTGCT+TGG | + | chr3.3:85743897-85743916 | None:intergenic | 50.0% | |
| GTAGGTTCCATTCTGCCCAA+TGG | - | chr3.3:85743528-85743547 | MS.gene012829:CDS | 50.0% | |
| GTGTTGCAGAACTTGTCCCT+GGG | - | chr3.3:85746248-85746267 | MS.gene012829:intron | 50.0% | |
| GTTCCATTCTGCCCAATGGT+TGG | - | chr3.3:85743532-85743551 | MS.gene012829:intron | 50.0% | |
| TATTAGCGGAAGCCGCAAAG+TGG | + | chr3.3:85745344-85745363 | None:intergenic | 50.0% | |
| TCCTTGGGGAGATTGGACAA+CGG | - | chr3.3:85747053-85747072 | MS.gene012829:CDS | 50.0% | |
| TCTAGCTATCCGAGCTCAAG+TGG | - | chr3.3:85746997-85747016 | MS.gene012829:CDS | 50.0% | |
| TCTGCATAGCAGTCTAGCAG+AGG | - | chr3.3:85744747-85744766 | MS.gene012829:intron | 50.0% | |
| TGGCAGAGACAACATCTGCA+AGG | - | chr3.3:85747210-85747229 | MS.gene012829:intron | 50.0% | |
| TGGGCCAGATGATGAAACCT+AGG | - | chr3.3:85745729-85745748 | MS.gene012829:intron | 50.0% | |
| TGGTTTCACCCGCAACAAAC+AGG | + | chr3.3:85743150-85743169 | None:intergenic | 50.0% | |
| TGTTGCAGAACTTGTCCCTG+GGG | - | chr3.3:85746249-85746268 | MS.gene012829:intron | 50.0% | |
| TTGCTGCTCTTGGAGAAGCT+TGG | + | chr3.3:85747372-85747391 | None:intergenic | 50.0% | |
| ! | CCGCACCTTTTCCTTGATCA+AGG | + | chr3.3:85743933-85743952 | None:intergenic | 50.0% |
| !! | ACCTAGGTAGTGGGGTTTAG+GGG | + | chr3.3:85745069-85745088 | None:intergenic | 50.0% |
| !! | GCTGAGTTGGTGATGAGATG+AGG | - | chr3.3:85745033-85745052 | MS.gene012829:intron | 50.0% |
| !! | TCAAGTGGAGGAACTTGCTG+TGG | - | chr3.3:85747012-85747031 | MS.gene012829:CDS | 50.0% |
| ACACTGTGCAGGTAGCTGTC+GGG | - | chr3.3:85744118-85744137 | MS.gene012829:intron | 55.0% | |
| ACCCCTAAACCCCACTACCT+AGG | - | chr3.3:85745065-85745084 | MS.gene012829:intron | 55.0% | |
| AGCTATCCGAGCTCAAGTGG+AGG | - | chr3.3:85747000-85747019 | MS.gene012829:CDS | 55.0% | |
| AGTGGGGCTGTGAAAAGGGT+TGG | - | chr3.3:85744165-85744184 | MS.gene012829:intron | 55.0% | |
| ATCTTGGCAACAACGCTCGC+AGG | + | chr3.3:85747187-85747206 | None:intergenic | 55.0% | |
| ATGTCAGGAGCTTGGGACCA+AGG | - | chr3.3:85743436-85743455 | MS.gene012829:intron | 55.0% | |
| CACACTGTGCAGGTAGCTGT+CGG | - | chr3.3:85744117-85744136 | MS.gene012829:intron | 55.0% | |
| CCAGAAGAAGATGGCTGGCA+AGG | - | chr3.3:85743358-85743377 | MS.gene012829:intron | 55.0% | |
| CCTTGCCAGCCATCTTCTTC+TGG | + | chr3.3:85743361-85743380 | None:intergenic | 55.0% | |
| GGCGTATCATGTCGACCACA+AGG | + | chr3.3:85743340-85743359 | None:intergenic | 55.0% | |
| TCCGTTGTCCAATCTCCCCA+AGG | + | chr3.3:85747057-85747076 | None:intergenic | 55.0% | |
| TGAACCTCTCCCTTGGGAAG+TGG | + | chr3.3:85744243-85744262 | None:intergenic | 55.0% | |
| TGCAGTCTTTCCGGTTCCAG+GGG | + | chr3.3:85743402-85743421 | None:intergenic | 55.0% | |
| TGGGTTTGTGGGACAAGCTG+AGG | - | chr3.3:85743298-85743317 | MS.gene012829:CDS | 55.0% | |
| TGTTCCACTTCCCAAGGGAG+AGG | - | chr3.3:85744236-85744255 | MS.gene012829:intron | 55.0% | |
| ! | AAGAGAAGCGTGTGGCCTTG+TGG | - | chr3.3:85743322-85743341 | MS.gene012829:CDS | 55.0% |
| ! | GGTGTTGCAGAACTTGTCCC+TGG | - | chr3.3:85746247-85746266 | MS.gene012829:intron | 55.0% |
| !! | GGAGGAACTTGCTGTGGATG+AGG | - | chr3.3:85747018-85747037 | MS.gene012829:CDS | 55.0% |
| AGAAGATGGGGAGGCAGAGG+AGG | + | chr3.3:85745109-85745128 | None:intergenic | 60.0% | |
| AGAGCTCGGTCACCTTGCAC+AGG | + | chr3.3:85743790-85743809 | None:intergenic | 60.0% | |
| CACTGTGCAGGTAGCTGTCG+GGG | - | chr3.3:85744119-85744138 | MS.gene012829:intron | 60.0% | |
| GAGAGAAGATGGGGAGGCAG+AGG | + | chr3.3:85745112-85745131 | None:intergenic | 60.0% | |
| GCAGTCTTTCCGGTTCCAGG+GGG | + | chr3.3:85743401-85743420 | None:intergenic | 60.0% | |
| ! | GCTGAGGCAAGAGAAGCGTG+TGG | - | chr3.3:85743314-85743333 | MS.gene012829:CDS | 60.0% |
| CTGCCAACGCGCGACCTCAA+GGG | - | chr3.3:85745684-85745703 | MS.gene012829:intron | 65.0% | |
| TGCCAACGCGCGACCTCAAG+GGG | - | chr3.3:85745685-85745704 | MS.gene012829:intron | 65.0% | |
| ! | GCAAGGCACTCCTTCTCGCC+GGG | - | chr3.3:85743375-85743394 | MS.gene012829:intron | 65.0% |
| ! | GGCAAGGCACTCCTTCTCGC+CGG | - | chr3.3:85743374-85743393 | MS.gene012829:intron | 65.0% |
| CCAACGCGCGACCTCAAGGG+GGG | - | chr3.3:85745687-85745706 | MS.gene012829:intron | 70.0% | |
| CTTTCCGGTTCCAGGGGGCC+CGG | + | chr3.3:85743396-85743415 | None:intergenic | 70.0% | |
| GCCAACGCGCGACCTCAAGG+GGG | - | chr3.3:85745686-85745705 | MS.gene012829:intron | 70.0% | |
| GCTGCCAACGCGCGACCTCA+AGG | - | chr3.3:85745683-85745702 | MS.gene012829:intron | 70.0% | |
| CCCCCCTTGAGGTCGCGCGT+TGG | + | chr3.3:85745690-85745709 | None:intergenic | 75.0% | |
| TTCCAGGGGGCCCGGCGAGA+AGG | + | chr3.3:85743388-85743407 | None:intergenic | 75.0% | |
| ! | CTCCTTCTCGCCGGGCCCCC+TGG | - | chr3.3:85743383-85743402 | MS.gene012829:intron | 80.0% |
| ! | CTCGCCGGGCCCCCTGGAAC+CGG | - | chr3.3:85743389-85743408 | MS.gene012829:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 85742937 | 85747409 | 85742937 | ID=MS.gene012829 |
| chr3.3 | mRNA | 85742937 | 85747409 | 85742937 | ID=MS.gene012829.t1;Parent=MS.gene012829 |
| chr3.3 | exon | 85747320 | 85747409 | 85747320 | ID=MS.gene012829.t1.exon1;Parent=MS.gene012829.t1 |
| chr3.3 | CDS | 85747320 | 85747409 | 85747320 | ID=cds.MS.gene012829.t1;Parent=MS.gene012829.t1 |
| chr3.3 | exon | 85746889 | 85747077 | 85746889 | ID=MS.gene012829.t1.exon2;Parent=MS.gene012829.t1 |
| chr3.3 | CDS | 85746889 | 85747077 | 85746889 | ID=cds.MS.gene012829.t1;Parent=MS.gene012829.t1 |
| chr3.3 | exon | 85746683 | 85746814 | 85746683 | ID=MS.gene012829.t1.exon3;Parent=MS.gene012829.t1 |
| chr3.3 | CDS | 85746683 | 85746814 | 85746683 | ID=cds.MS.gene012829.t1;Parent=MS.gene012829.t1 |
| chr3.3 | exon | 85746400 | 85746549 | 85746400 | ID=MS.gene012829.t1.exon4;Parent=MS.gene012829.t1 |
| chr3.3 | CDS | 85746400 | 85746549 | 85746400 | ID=cds.MS.gene012829.t1;Parent=MS.gene012829.t1 |
| chr3.3 | exon | 85746062 | 85746217 | 85746062 | ID=MS.gene012829.t1.exon5;Parent=MS.gene012829.t1 |
| chr3.3 | CDS | 85746062 | 85746217 | 85746062 | ID=cds.MS.gene012829.t1;Parent=MS.gene012829.t1 |
| chr3.3 | exon | 85744553 | 85744687 | 85744553 | ID=MS.gene012829.t1.exon6;Parent=MS.gene012829.t1 |
| chr3.3 | CDS | 85744553 | 85744687 | 85744553 | ID=cds.MS.gene012829.t1;Parent=MS.gene012829.t1 |
| chr3.3 | exon | 85744058 | 85744123 | 85744058 | ID=MS.gene012829.t1.exon7;Parent=MS.gene012829.t1 |
| chr3.3 | CDS | 85744058 | 85744123 | 85744058 | ID=cds.MS.gene012829.t1;Parent=MS.gene012829.t1 |
| chr3.3 | exon | 85743868 | 85743974 | 85743868 | ID=MS.gene012829.t1.exon8;Parent=MS.gene012829.t1 |
| chr3.3 | CDS | 85743868 | 85743974 | 85743868 | ID=cds.MS.gene012829.t1;Parent=MS.gene012829.t1 |
| chr3.3 | exon | 85743448 | 85743547 | 85743448 | ID=MS.gene012829.t1.exon9;Parent=MS.gene012829.t1 |
| chr3.3 | CDS | 85743448 | 85743547 | 85743448 | ID=cds.MS.gene012829.t1;Parent=MS.gene012829.t1 |
| chr3.3 | exon | 85743260 | 85743351 | 85743260 | ID=MS.gene012829.t1.exon10;Parent=MS.gene012829.t1 |
| chr3.3 | CDS | 85743260 | 85743351 | 85743260 | ID=cds.MS.gene012829.t1;Parent=MS.gene012829.t1 |
| chr3.3 | exon | 85743115 | 85743184 | 85743115 | ID=MS.gene012829.t1.exon11;Parent=MS.gene012829.t1 |
| chr3.3 | CDS | 85743115 | 85743184 | 85743115 | ID=cds.MS.gene012829.t1;Parent=MS.gene012829.t1 |
| chr3.3 | exon | 85742937 | 85743026 | 85742937 | ID=MS.gene012829.t1.exon12;Parent=MS.gene012829.t1 |
| chr3.3 | CDS | 85742937 | 85743026 | 85742937 | ID=cds.MS.gene012829.t1;Parent=MS.gene012829.t1 |
| Gene Sequence |
| Protein sequence |
