Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84545.t1 | XP_003600480.1 | 99.8 | 465 | 1 | 0 | 1 | 465 | 1 | 465 | 1.60E-254 | 888.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84545.t1 | Q9DE27 | 76.4 | 461 | 107 | 2 | 1 | 461 | 4 | 462 | 9.5e-200 | 697.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84545.t1 | G7J268 | 99.8 | 465 | 1 | 0 | 1 | 465 | 1 | 465 | 1.1e-254 | 888.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene84545 | MS.gene022650 | PPI |
| MS.gene04079 | MS.gene84545 | PPI |
| MS.gene84545 | MS.gene037838 | PPI |
| MS.gene84545 | MS.gene28806 | PPI |
| MS.gene84545 | MS.gene012829 | PPI |
| MS.gene055437 | MS.gene84545 | PPI |
| MS.gene08109 | MS.gene84545 | PPI |
| MS.gene84545 | MS.gene050408 | PPI |
| MS.gene84545 | MS.gene37440 | PPI |
| MS.gene84545 | MS.gene072703 | PPI |
| MS.gene84545 | MS.gene015034 | PPI |
| MS.gene32832 | MS.gene84545 | PPI |
| MS.gene04418 | MS.gene84545 | PPI |
| MS.gene05640 | MS.gene84545 | PPI |
| MS.gene07047 | MS.gene84545 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84545.t1 | MTR_3g061640 | 99.785 | 465 | 1 | 0 | 1 | 465 | 1 | 465 | 0.0 | 946 |
| MS.gene84545.t1 | MTR_3g104080 | 44.206 | 466 | 233 | 7 | 1 | 448 | 1 | 457 | 1.93e-127 | 377 |
| MS.gene84545.t1 | MTR_6g023370 | 40.570 | 456 | 236 | 7 | 4 | 448 | 1 | 432 | 1.39e-103 | 316 |
| MS.gene84545.t1 | MTR_3g104080 | 43.750 | 368 | 180 | 7 | 99 | 448 | 1 | 359 | 1.73e-91 | 282 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84545.t1 | AT5G67630 | 85.867 | 467 | 62 | 1 | 1 | 463 | 1 | 467 | 0.0 | 805 |
| MS.gene84545.t1 | AT3G49830 | 79.601 | 451 | 91 | 1 | 1 | 450 | 1 | 451 | 0.0 | 748 |
| MS.gene84545.t1 | AT5G22330 | 43.791 | 459 | 245 | 5 | 1 | 448 | 1 | 457 | 3.90e-126 | 374 |
Find 133 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAGAACGCAGGGATTTC+TGG | 0.168140 | 3.1:-46276681 | MS.gene84545:intron |
| CTGTCTTTCCCTTTCTCTTT+TGG | 0.168943 | 3.1:+46276195 | None:intergenic |
| AGATGTTTCTACACCTATTT+TGG | 0.215981 | 3.1:+46276262 | None:intergenic |
| GTTGGTAGCCACAACTAAAA+TGG | 0.256258 | 3.1:+46276469 | None:intergenic |
| AAGCATTTGTTAACCAAAAT+AGG | 0.257783 | 3.1:-46276275 | MS.gene84545:CDS |
| GGATGAAATTCGCAAAATTC+TGG | 0.273264 | 3.1:-46276342 | MS.gene84545:CDS |
| ATGGAGACAGTTTATGATTT+GGG | 0.276416 | 3.1:-46279278 | MS.gene84545:CDS |
| GGCTATAGGAGTGAGAATTA+AGG | 0.320370 | 3.1:-46279408 | MS.gene84545:CDS |
| GATGGAGACAGTTTATGATT+TGG | 0.326928 | 3.1:-46279279 | MS.gene84545:CDS |
| GTGAAATTCGTGCAGAAGTC+AGG | 0.327601 | 3.1:-46276637 | MS.gene84545:CDS |
| TTGAATTGGATGATATTAAT+CGG | 0.343045 | 3.1:-46276172 | MS.gene84545:CDS |
| ATTGCAATTGATAAGGCTTC+AGG | 0.345450 | 3.1:-46279203 | MS.gene84545:CDS |
| AAAGGGAAAGACAGTTGAAT+TGG | 0.347244 | 3.1:-46276186 | MS.gene84545:CDS |
| CAATACATGTTCAGTGAAAC+AGG | 0.377429 | 3.1:-46276089 | MS.gene84545:CDS |
| CTCTATGCGCGTTAGGTCGC+GGG | 0.381377 | 3.1:+46279745 | None:intergenic |
| ATTGATCGTCCGGCGGTGGC+TGG | 0.381879 | 3.1:-46279344 | MS.gene84545:CDS |
| GGAGACGGCGCGTGGCTCTA+AGG | 0.387209 | 3.1:+46279676 | None:intergenic |
| CGAATTTCATCCTCAGTGTA+AGG | 0.394218 | 3.1:+46276353 | None:intergenic |
| ACTCCTTTCGCCATGATTGC+TGG | 0.398150 | 3.1:-46279491 | MS.gene84545:CDS |
| GGCTGGAGCTGCGGCGAAGA+CGG | 0.399233 | 3.1:-46279327 | MS.gene84545:CDS |
| GGCGAGGAGAACAGCGCGTC+CGG | 0.402500 | 3.1:+46279577 | None:intergenic |
| GCTGGAGCTGCGGCGAAGAC+GGG | 0.407291 | 3.1:-46279326 | MS.gene84545:CDS |
| TTCATTCCTCAATCGGGCTC+TGG | 0.407946 | 3.1:-46276507 | MS.gene84545:CDS |
| CCACGCGCTCTATGCGCGTT+AGG | 0.424297 | 3.1:+46279738 | None:intergenic |
| CACTCACACATCCGTGGCCT+CGG | 0.425854 | 3.1:-46279710 | MS.gene84545:CDS |
| AAGATCGACACAGTACTTGA+TGG | 0.429777 | 3.1:-46276123 | MS.gene84545:CDS |
| TCTAATCACAGCATCTGCTT+TGG | 0.431645 | 3.1:-46276222 | MS.gene84545:CDS |
| GCTCTATGCGCGTTAGGTCG+CGG | 0.432519 | 3.1:+46279744 | None:intergenic |
| CGGCTTTACGAGCGGAGACT+TGG | 0.439804 | 3.1:+46279639 | None:intergenic |
| CGAAGATGATTGAGGCGATT+GGG | 0.440792 | 3.1:-46279253 | MS.gene84545:CDS |
| CTCGCCGGTCAGCCAGGTAC+TGG | 0.441713 | 3.1:-46279560 | MS.gene84545:CDS |
| CTCTTCTGCAACTCACCATC+AGG | 0.442493 | 3.1:+46279098 | None:intergenic |
| GCGAAGATGATTGAGGCGAT+TGG | 0.445428 | 3.1:-46279254 | MS.gene84545:CDS |
| GGGAAGGAGAAGGTGACAAG+TGG | 0.446271 | 3.1:-46279233 | MS.gene84545:CDS |
| GTTCTCCTCGCCGGTCAGCC+AGG | 0.456290 | 3.1:-46279566 | MS.gene84545:CDS |
| TGAATTGGATGATATTAATC+GGG | 0.459515 | 3.1:-46276171 | MS.gene84545:CDS |
| TCAGGGAAGATTACGAAGCT+TGG | 0.461687 | 3.1:-46279185 | MS.gene84545:CDS |
| CAGGGAAGATTACGAAGCTT+GGG | 0.462304 | 3.1:-46279184 | MS.gene84545:CDS |
| AGTGAGAATTAAGGAGGAAA+CGG | 0.465530 | 3.1:-46279399 | MS.gene84545:CDS |
| GCCGACCATGCCTTCGGAGA+CGG | 0.465787 | 3.1:+46279661 | None:intergenic |
| GAGGAAACGGAGGTGATTGA+AGG | 0.467645 | 3.1:-46279386 | MS.gene84545:CDS |
| GTTGAGTAGAGATGATGAGT+AGG | 0.468747 | 3.1:+46276375 | None:intergenic |
| GACACTGCACAAACTTCACC+TGG | 0.472592 | 3.1:+46279120 | None:intergenic |
| GGCAAAACCGCTATTGCAAT+GGG | 0.477742 | 3.1:-46279539 | MS.gene84545:CDS |
| CATTCTCCAGAGCCCGATTG+AGG | 0.480580 | 3.1:+46276501 | None:intergenic |
| CTTCCGAAAAGCTTGTGTTA+AGG | 0.481406 | 3.1:+46279430 | None:intergenic |
| TTGGTAGCCACAACTAAAAT+GGG | 0.483901 | 3.1:+46276470 | None:intergenic |
| GGAAGGAGAAGGTGACAAGT+GGG | 0.485543 | 3.1:-46279232 | MS.gene84545:CDS |
| GACTTGGCCGACCATGCCTT+CGG | 0.485767 | 3.1:+46279655 | None:intergenic |
| GTGGCAGAGTGGAAAGAAGA+AGG | 0.488801 | 3.1:-46276596 | MS.gene84545:CDS |
| CGCCATTCCCATTGCAATAG+CGG | 0.489903 | 3.1:+46279532 | None:intergenic |
| TAGGCGATCAAGTAGATCAA+TGG | 0.491544 | 3.1:+46276394 | None:intergenic |
| AAGCTCACTACCAGCAATCA+TGG | 0.493183 | 3.1:+46279481 | None:intergenic |
| AGATTGATGTTATTAATAGC+AGG | 0.494305 | 3.1:-46279043 | MS.gene84545:intron |
| ACGAATTTCACCCGTGTCAC+CGG | 0.506863 | 3.1:+46276649 | None:intergenic |
| TGGCAAAACCGCTATTGCAA+TGG | 0.507380 | 3.1:-46279540 | MS.gene84545:CDS |
| AGGCGATCAAGTAGATCAAT+GGG | 0.510466 | 3.1:+46276395 | None:intergenic |
| GGATGTGATTGCAATTGATA+AGG | 0.511528 | 3.1:-46279210 | MS.gene84545:CDS |
| TCATGTCTACGTCTTCCTCT+TGG | 0.512507 | 3.1:+46276309 | None:intergenic |
| GCCGCAGCTCCAGCCACCGC+CGG | 0.514286 | 3.1:+46279335 | None:intergenic |
| TCAGATTGATCGTCCGGCGG+TGG | 0.514313 | 3.1:-46279348 | MS.gene84545:CDS |
| TGAGGTTCAGATTGATCGTC+CGG | 0.515205 | 3.1:-46279354 | MS.gene84545:CDS |
| TTTGCCAGTACCTGGCTGAC+CGG | 0.518638 | 3.1:+46279556 | None:intergenic |
| TTGCAATTGATAAGGCTTCA+GGG | 0.528887 | 3.1:-46279202 | MS.gene84545:CDS |
| TGTGTACCTCATCAATGAAA+AGG | 0.533089 | 3.1:+46276549 | None:intergenic |
| TCCGGCGGTGGCTGGAGCTG+CGG | 0.535910 | 3.1:-46279336 | MS.gene84545:CDS |
| TCGTGTTAATTTCAGAACGC+AGG | 0.541700 | 3.1:-46276690 | MS.gene84545:intron |
| TTTGGCATGCCAAAAGAGAA+AGG | 0.542916 | 3.1:-46276204 | MS.gene84545:CDS |
| GAGCCACGCGCCGTCTCCGA+AGG | 0.543555 | 3.1:-46279671 | MS.gene84545:CDS |
| GGAAAGGCAGAGATTGTGCC+TGG | 0.550110 | 3.1:-46276575 | MS.gene84545:CDS |
| AACCGCTATTGCAATGGGAA+TGG | 0.556997 | 3.1:-46279534 | MS.gene84545:CDS |
| AACGGAGGTGATTGAAGGTG+AGG | 0.557415 | 3.1:-46279381 | MS.gene84545:CDS |
| AAGAGTCGAGACCGAGGCCA+CGG | 0.559879 | 3.1:+46279699 | None:intergenic |
| GGACGCGCTGTTCTCCTCGC+CGG | 0.560307 | 3.1:-46279575 | MS.gene84545:CDS |
| CTGGAGCTGCGGCGAAGACG+GGG | 0.560612 | 3.1:-46279325 | MS.gene84545:CDS |
| TATAGGAGTGAGAATTAAGG+AGG | 0.560876 | 3.1:-46279405 | MS.gene84545:CDS |
| TTGGCATGCCAAAAGAGAAA+GGG | 0.561252 | 3.1:-46276203 | MS.gene84545:CDS |
| CGTGTTAATTTCAGAACGCA+GGG | 0.562879 | 3.1:-46276689 | MS.gene84545:intron |
| TGGAGACAGTTTATGATTTG+GGG | 0.563382 | 3.1:-46279277 | MS.gene84545:CDS |
| AAGTTTGTGCAGTGTCCTGA+TGG | 0.565334 | 3.1:-46279113 | MS.gene84545:CDS |
| ATGGGAATGGCGAAATCCCT+CGG | 0.565356 | 3.1:-46279521 | MS.gene84545:CDS |
| GCCGTCTCCGAAGGCATGGT+CGG | 0.566014 | 3.1:-46279662 | MS.gene84545:CDS |
| CCTAACGCGCATAGAGCGCG+TGG | 0.566275 | 3.1:-46279738 | MS.gene84545:CDS |
| AGATGCTGTGATTAGATGAA+TGG | 0.566370 | 3.1:+46276229 | None:intergenic |
| ACGCGCCGTCTCCGAAGGCA+TGG | 0.570079 | 3.1:-46279666 | MS.gene84545:CDS |
| GTCTCCGCTCGTAAAGCCGC+CGG | 0.573288 | 3.1:-46279635 | MS.gene84545:CDS |
| TGGTGAGTTGCAGAAGAGGA+AGG | 0.574351 | 3.1:-46279093 | MS.gene84545:CDS |
| GATTGAAGGTGAGGTTGTTG+AGG | 0.575785 | 3.1:-46279372 | MS.gene84545:CDS |
| ATGCCTTCGGAGACGGCGCG+TGG | 0.577386 | 3.1:+46279668 | None:intergenic |
| AGAGGCATCACAACTATTCG+AGG | 0.577787 | 3.1:-46276446 | MS.gene84545:CDS |
| ATTTCACTGGACCATAGCAT+TGG | 0.578908 | 3.1:+46276046 | None:intergenic |
| CGTTATCCTCCAGATGATCA+AGG | 0.584244 | 3.1:-46279612 | MS.gene84545:CDS |
| TACCGTCCTTGATCATCTGG+AGG | 0.584863 | 3.1:+46279606 | None:intergenic |
| ATCAAGGACGGTAAAATCGC+CGG | 0.587643 | 3.1:-46279596 | MS.gene84545:CDS |
| TGAAATTCGTGCAGAAGTCA+GGG | 0.588620 | 3.1:-46276636 | MS.gene84545:CDS |
| AATAGTTGTGATGCCTCTGT+TGG | 0.588977 | 3.1:+46276451 | None:intergenic |
| GGAACAAATTGACACGAAAG+TGG | 0.589018 | 3.1:-46276615 | MS.gene84545:CDS |
| AGAGTGGAAAGAAGAAGGAA+AGG | 0.593025 | 3.1:-46276591 | MS.gene84545:CDS |
| GACGTTGAAGTCGACAGAGA+TGG | 0.594302 | 3.1:-46279297 | MS.gene84545:CDS |
| GAGAATTAAGGAGGAAACGG+AGG | 0.595347 | 3.1:-46279396 | MS.gene84545:CDS |
| TGAGTTGCAGAAGAGGAAGG+AGG | 0.595760 | 3.1:-46279090 | MS.gene84545:CDS |
| TGAGGCGATTGGGAAGGAGA+AGG | 0.596968 | 3.1:-46279243 | MS.gene84545:CDS |
| ACAAATTACAAATCCCCACA+TGG | 0.598468 | 3.1:-46276422 | MS.gene84545:CDS |
| GAAGGAGAAGGTGACAAGTG+GGG | 0.598656 | 3.1:-46279231 | MS.gene84545:CDS |
| AACGCCGGCGGCTTTACGAG+CGG | 0.602307 | 3.1:+46279631 | None:intergenic |
| GATGATTGAGGCGATTGGGA+AGG | 0.606012 | 3.1:-46279249 | MS.gene84545:CDS |
| TGAAGACGACACCAATGCTA+TGG | 0.611055 | 3.1:-46276057 | MS.gene84545:CDS |
| CTGATGGTGAGTTGCAGAAG+AGG | 0.612555 | 3.1:-46279097 | MS.gene84545:CDS |
| GTTGCAGAAGAGGAAGGAGG+TGG | 0.615066 | 3.1:-46279087 | MS.gene84545:CDS |
| CACTGCACAAACTTCACCTG+GGG | 0.619359 | 3.1:+46279122 | None:intergenic |
| CTACCAGCAATCATGGCGAA+AGG | 0.622667 | 3.1:+46279488 | None:intergenic |
| GATCAATGGGAATCCCATGT+GGG | 0.625545 | 3.1:+46276408 | None:intergenic |
| TTAGTTGTGGCTACCAACAG+AGG | 0.628149 | 3.1:-46276464 | MS.gene84545:CDS |
| ACACTGCACAAACTTCACCT+GGG | 0.635750 | 3.1:+46279121 | None:intergenic |
| GAAAGGAGTCTCAAGACCGA+GGG | 0.644534 | 3.1:+46279505 | None:intergenic |
| GGAGACAGTTTATGATTTGG+GGG | 0.645063 | 3.1:-46279276 | MS.gene84545:CDS |
| CAGTACCTGGCTGACCGGCG+AGG | 0.645488 | 3.1:+46279561 | None:intergenic |
| GGAGCACACTCACACATCCG+TGG | 0.647608 | 3.1:-46279716 | MS.gene84545:CDS |
| CGAAAGGAGTCTCAAGACCG+AGG | 0.650449 | 3.1:+46279504 | None:intergenic |
| TTGACACGAAAGTGGCAGAG+TGG | 0.654228 | 3.1:-46276607 | MS.gene84545:CDS |
| ATCCTCCAGATGATCAAGGA+CGG | 0.657130 | 3.1:-46279608 | MS.gene84545:CDS |
| AGATCAATGGGAATCCCATG+TGG | 0.657627 | 3.1:+46276407 | None:intergenic |
| TCATCAATGAAAAGGACACC+AGG | 0.662622 | 3.1:+46276557 | None:intergenic |
| GATCATCTGGAGGATAACGC+CGG | 0.668449 | 3.1:+46279616 | None:intergenic |
| GAAGACGTAGACATGAGTGA+AGG | 0.670929 | 3.1:-46276302 | MS.gene84545:CDS |
| ATCAATGGGAATCCCATGTG+GGG | 0.673789 | 3.1:+46276409 | None:intergenic |
| CAAATTACAAATCCCCACAT+GGG | 0.679587 | 3.1:-46276421 | MS.gene84545:CDS |
| CTAACGCGCATAGAGCGCGT+GGG | 0.688219 | 3.1:-46279737 | MS.gene84545:CDS |
| TCTGGATATCAGATGCCAAG+AGG | 0.689336 | 3.1:-46276324 | MS.gene84545:CDS |
| CTAAGGAAGAGTCGAGACCG+AGG | 0.699482 | 3.1:+46279693 | None:intergenic |
| GGTTCAGATTGATCGTCCGG+CGG | 0.711952 | 3.1:-46279351 | MS.gene84545:CDS |
| CATCTGGAGGATAACGCCGG+CGG | 0.729769 | 3.1:+46279619 | None:intergenic |
| CTCTACTCAACCTTACACTG+AGG | 0.741639 | 3.1:-46276363 | MS.gene84545:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAGAAAAATTGTT+TGG | + | chr3.1:46278670-46278689 | None:intergenic | 10.0% |
| !! | TAAATCTAAATAAATACTAA+GGG | + | chr3.1:46278771-46278790 | None:intergenic | 10.0% |
| !! | AAATGTTAAGTCATATAAAA+AGG | - | chr3.1:46277782-46277801 | MS.gene84545:intron | 15.0% |
| !! | AAATTATGAAAAGCAAAAAA+AGG | + | chr3.1:46276820-46276839 | None:intergenic | 15.0% |
| !! | AATTATGAAAAGCAAAAAAA+GGG | + | chr3.1:46276819-46276838 | None:intergenic | 15.0% |
| !! | ATATGAAATAAAAACTATAC+AGG | + | chr3.1:46277265-46277284 | None:intergenic | 15.0% |
| !! | GTAAATCTAAATAAATACTA+AGG | + | chr3.1:46278772-46278791 | None:intergenic | 15.0% |
| !!! | AAATTTTAAAAACTGAAAAC+CGG | - | chr3.1:46278729-46278748 | MS.gene84545:intron | 15.0% |
| !!! | AATTATGTTGTTTTTACAAA+TGG | + | chr3.1:46276941-46276960 | None:intergenic | 15.0% |
| !!! | GTTCAAAAAAAAAACATTTT+GGG | + | chr3.1:46277749-46277768 | None:intergenic | 15.0% |
| !!! | TGTTAATTAGCTTTATATTA+AGG | - | chr3.1:46277833-46277852 | MS.gene84545:intron | 15.0% |
| !!! | TGTTCAAAAAAAAAACATTT+TGG | + | chr3.1:46277750-46277769 | None:intergenic | 15.0% |
| !!! | TTCAAAAAAAAAACATTTTG+GGG | + | chr3.1:46277748-46277767 | None:intergenic | 15.0% |
| !! | AATTATGCCATTAATGAAAA+AGG | + | chr3.1:46278604-46278623 | None:intergenic | 20.0% |
| !! | AATTGTAATAACTTCAATCA+TGG | - | chr3.1:46278620-46278639 | MS.gene84545:intron | 20.0% |
| !! | ATTATGAAAAGCAAAAAAAG+GGG | + | chr3.1:46276818-46276837 | None:intergenic | 20.0% |
| !! | TTGAATTGGATGATATTAAT+CGG | - | chr3.1:46279647-46279666 | MS.gene84545:CDS | 20.0% |
| !!! | AAATTATGTTGTTTCTTTGA+TGG | - | chr3.1:46277387-46277406 | MS.gene84545:intron | 20.0% |
| !!! | ACTAATCTAAAACAAATCAT+TGG | + | chr3.1:46278206-46278225 | None:intergenic | 20.0% |
| !!! | ATTTGGTTGTTTTATGTTTT+TGG | - | chr3.1:46278308-46278327 | MS.gene84545:intron | 20.0% |
| !!! | TAAGGTAATGTTTGTTTTTA+TGG | - | chr3.1:46277851-46277870 | MS.gene84545:intron | 20.0% |
| !!! | TATTAAATTTTCCAACTTGT+TGG | - | chr3.1:46279038-46279057 | MS.gene84545:intron | 20.0% |
| !!! | TCTTTTGAAAACTAAAAACA+CGG | - | chr3.1:46278571-46278590 | MS.gene84545:intron | 20.0% |
| !!! | TGAAGTTATGTTTGTTTTTA+GGG | - | chr3.1:46276882-46276901 | MS.gene84545:intron | 20.0% |
| !!! | TTAATAGAAAGTTTTACATC+TGG | + | chr3.1:46279024-46279043 | None:intergenic | 20.0% |
| !!! | TTGAAGTTATGTTTGTTTTT+AGG | - | chr3.1:46276881-46276900 | MS.gene84545:intron | 20.0% |
| ! | ACTTCAGAAAAGAGATATTA+TGG | + | chr3.1:46278118-46278137 | None:intergenic | 25.0% |
| ! | AGATTATCAATGATGTATGT+AGG | - | chr3.1:46277884-46277903 | MS.gene84545:intron | 25.0% |
| ! | AGATTGATGTTATTAATAGC+AGG | - | chr3.1:46276776-46276795 | MS.gene84545:intron | 25.0% |
| ! | ATAGATCTGTGTCAAAAATT+TGG | - | chr3.1:46278291-46278310 | MS.gene84545:intron | 25.0% |
| ! | CTATACTTCTCAATTGTATT+TGG | + | chr3.1:46277327-46277346 | None:intergenic | 25.0% |
| ! | CTTCAGAAAAGAGATATTAT+GGG | + | chr3.1:46278117-46278136 | None:intergenic | 25.0% |
| ! | GAAGTTATAGTTTGAGTAAT+TGG | - | chr3.1:46277193-46277212 | MS.gene84545:intron | 25.0% |
| ! | GTTAAAAGAAACTCATCATA+TGG | + | chr3.1:46278249-46278268 | None:intergenic | 25.0% |
| ! | TCTTATAACTTACATGCAAA+CGG | + | chr3.1:46277015-46277034 | None:intergenic | 25.0% |
| ! | TGAATTGGATGATATTAATC+GGG | - | chr3.1:46279648-46279667 | MS.gene84545:CDS | 25.0% |
| ! | TTAAAACCACATAGAAAACT+TGG | + | chr3.1:46278415-46278434 | None:intergenic | 25.0% |
| ! | TTGAAATTGAAAACAGCTTA+TGG | - | chr3.1:46277080-46277099 | MS.gene84545:intron | 25.0% |
| !! | AAGCATTTGTTAACCAAAAT+AGG | - | chr3.1:46279544-46279563 | MS.gene84545:CDS | 25.0% |
| !! | TTTTTGTGATGTGATCATTT+TGG | - | chr3.1:46277565-46277584 | MS.gene84545:intron | 25.0% |
| !!! | AAAAAACATTTTGGGGAAAA+AGG | + | chr3.1:46277741-46277760 | None:intergenic | 25.0% |
| !!! | AAAAACATTTTGGGGAAAAA+GGG | + | chr3.1:46277740-46277759 | None:intergenic | 25.0% |
| !!! | AGAACAACCTTTTTCATTAA+TGG | - | chr3.1:46278594-46278613 | MS.gene84545:intron | 25.0% |
| !!! | GAATGATTTTAGAGAGAAAA+GGG | + | chr3.1:46278998-46279017 | None:intergenic | 25.0% |
| AATTTATACAGACTTGCCAA+TGG | - | chr3.1:46277516-46277535 | MS.gene84545:intron | 30.0% | |
| ACTGTTTCCATAAGTTATCT+TGG | - | chr3.1:46277965-46277984 | MS.gene84545:intron | 30.0% | |
| ATGGAGACAGTTTATGATTT+GGG | - | chr3.1:46276541-46276560 | MS.gene84545:CDS | 30.0% | |
| CAACTTGTAACACAAGAAAA+AGG | + | chr3.1:46279083-46279102 | None:intergenic | 30.0% | |
| CTAAATCGTCAAACAAAACT+TGG | + | chr3.1:46277463-46277482 | None:intergenic | 30.0% | |
| CTAATCCAAAACAAATGATG+TGG | + | chr3.1:46277237-46277256 | None:intergenic | 30.0% | |
| CTAGTAGAAAAGCTGAAATA+AGG | - | chr3.1:46278078-46278097 | MS.gene84545:intron | 30.0% | |
| GAGAACTAAAAAACAGAAAG+TGG | - | chr3.1:46278516-46278535 | MS.gene84545:intron | 30.0% | |
| GTAAATCCTCATAGAAAACT+TGG | + | chr3.1:46278378-46278397 | None:intergenic | 30.0% | |
| TATCTTGTGTTTATCCAAAC+AGG | + | chr3.1:46277911-46277930 | None:intergenic | 30.0% | |
| TCAAATAAGTGAATCCGAAT+AGG | - | chr3.1:46277151-46277170 | MS.gene84545:intron | 30.0% | |
| TGAAATAAGGCAATCTAAAC+TGG | - | chr3.1:46278091-46278110 | MS.gene84545:intron | 30.0% | |
| TTGAACTTATGAGCCTATAT+GGG | + | chr3.1:46277135-46277154 | None:intergenic | 30.0% | |
| TTTGAACTTATGAGCCTATA+TGG | + | chr3.1:46277136-46277155 | None:intergenic | 30.0% | |
| ! | TAGAAAGTTTTACATCTGGA+AGG | + | chr3.1:46279020-46279039 | None:intergenic | 30.0% |
| ! | TGTTATCCAAGTTTTCTATG+AGG | - | chr3.1:46278369-46278388 | MS.gene84545:intron | 30.0% |
| ! | TTAACTGTGTGACTTTGAAA+TGG | - | chr3.1:46278264-46278283 | MS.gene84545:intron | 30.0% |
| ! | TTACATCCAAGTTTTCTATG+TGG | - | chr3.1:46278406-46278425 | MS.gene84545:intron | 30.0% |
| ! | TTTTTGTGAGGTGATCATTT+TGG | - | chr3.1:46278829-46278848 | MS.gene84545:intron | 30.0% |
| !! | AGATGTTTCTACACCTATTT+TGG | + | chr3.1:46279560-46279579 | None:intergenic | 30.0% |
| !! | GGAATGATTTTAGAGAGAAA+AGG | + | chr3.1:46278999-46279018 | None:intergenic | 30.0% |
| !! | TAACTGTGTGACTTTGAAAT+GGG | - | chr3.1:46278265-46278284 | MS.gene84545:intron | 30.0% |
| !! | TCGGGTTTACAATTTGTTTT+TGG | - | chr3.1:46279666-46279685 | MS.gene84545:CDS | 30.0% |
| !!! | CATGATGCTTTATTTTTGTG+AGG | - | chr3.1:46278817-46278836 | MS.gene84545:intron | 30.0% |
| AAAGGGAAAGACAGTTGAAT+TGG | - | chr3.1:46279633-46279652 | MS.gene84545:CDS | 35.0% | |
| AAGTCCTCCAAGATAACTTA+TGG | + | chr3.1:46277975-46277994 | None:intergenic | 35.0% | |
| AAGTTATCTTGGAGGACTTA+TGG | - | chr3.1:46277976-46277995 | MS.gene84545:intron | 35.0% | |
| AATGGTACCTACATAAACCA+TGG | + | chr3.1:46276923-46276942 | None:intergenic | 35.0% | |
| ACAAATTACAAATCCCCACA+TGG | - | chr3.1:46279397-46279416 | MS.gene84545:CDS | 35.0% | |
| ACATATTTCCATTAGCTCAC+CGG | + | chr3.1:46277061-46277080 | None:intergenic | 35.0% | |
| ACGCTAAGAGCAAATTAATC+AGG | + | chr3.1:46278339-46278358 | None:intergenic | 35.0% | |
| AGATGCTGTGATTAGATGAA+TGG | + | chr3.1:46279593-46279612 | None:intergenic | 35.0% | |
| AGCTAAACAAACCAACAAGT+TGG | + | chr3.1:46279052-46279071 | None:intergenic | 35.0% | |
| AGTGAGAATTAAGGAGGAAA+CGG | - | chr3.1:46276420-46276439 | MS.gene84545:CDS | 35.0% | |
| ATTGCAATTGATAAGGCTTC+AGG | - | chr3.1:46276616-46276635 | MS.gene84545:CDS | 35.0% | |
| CAAATTACAAATCCCCACAT+GGG | - | chr3.1:46279398-46279417 | MS.gene84545:CDS | 35.0% | |
| CAATACATGTTCAGTGAAAC+AGG | - | chr3.1:46279730-46279749 | MS.gene84545:CDS | 35.0% | |
| CGAGATAATATCGACCTATT+CGG | + | chr3.1:46277168-46277187 | None:intergenic | 35.0% | |
| CTTGTAACACAAGAAAAAGG+AGG | + | chr3.1:46279080-46279099 | None:intergenic | 35.0% | |
| GAACATTGCAATACAACTCT+AGG | + | chr3.1:46277439-46277458 | None:intergenic | 35.0% | |
| GATGGAGACAGTTTATGATT+TGG | - | chr3.1:46276540-46276559 | MS.gene84545:CDS | 35.0% | |
| GGATGAAATTCGCAAAATTC+TGG | - | chr3.1:46279477-46279496 | MS.gene84545:CDS | 35.0% | |
| GGATGTGATTGCAATTGATA+AGG | - | chr3.1:46276609-46276628 | MS.gene84545:CDS | 35.0% | |
| GTTTCCATAAGTTATCTTGG+AGG | - | chr3.1:46277968-46277987 | MS.gene84545:intron | 35.0% | |
| TATAGGAGTGAGAATTAAGG+AGG | - | chr3.1:46276414-46276433 | MS.gene84545:CDS | 35.0% | |
| TGGAGACAGTTTATGATTTG+GGG | - | chr3.1:46276542-46276561 | MS.gene84545:CDS | 35.0% | |
| TGTGTACCTCATCAATGAAA+AGG | + | chr3.1:46279273-46279292 | None:intergenic | 35.0% | |
| TTGCAATTGATAAGGCTTCA+GGG | - | chr3.1:46276617-46276636 | MS.gene84545:CDS | 35.0% | |
| TTGCATAAGTTCTCCCATAT+AGG | - | chr3.1:46277119-46277138 | MS.gene84545:intron | 35.0% | |
| TTGTGTTACAAGTTGCTTCT+TGG | - | chr3.1:46279088-46279107 | MS.gene84545:CDS | 35.0% | |
| ! | AAGCCTTAACACAAGCTTTT+CGG | - | chr3.1:46276386-46276405 | MS.gene84545:CDS | 35.0% |
| ! | AGAAGCCACATCATTTGTTT+TGG | - | chr3.1:46277229-46277248 | MS.gene84545:intron | 35.0% |
| ! | AGTGCTTTTCATTCCTCAAT+CGG | - | chr3.1:46279305-46279324 | MS.gene84545:CDS | 35.0% |
| ! | AGTTGTGTGACTTTAGAAAC+TGG | - | chr3.1:46277345-46277364 | MS.gene84545:intron | 35.0% |
| ! | TTGGTAGCCACAACTAAAAT+GGG | + | chr3.1:46279352-46279371 | None:intergenic | 35.0% |
| !! | GCTGTTTTCATAAGCTATAC+CGG | - | chr3.1:46277039-46277058 | MS.gene84545:intron | 35.0% |
| !!! | AATGTCTCCCATTTTAGTTG+TGG | - | chr3.1:46279342-46279361 | MS.gene84545:CDS | 35.0% |
| !!! | TTGATGGTTTTGAAGATTCC+TGG | - | chr3.1:46277403-46277422 | MS.gene84545:intron | 35.0% |
| AAGATCGACACAGTACTTGA+TGG | - | chr3.1:46279696-46279715 | MS.gene84545:CDS | 40.0% | |
| AATAGTTGTGATGCCTCTGT+TGG | + | chr3.1:46279371-46279390 | None:intergenic | 40.0% | |
| AGAGTGGAAAGAAGAAGGAA+AGG | - | chr3.1:46279228-46279247 | MS.gene84545:CDS | 40.0% | |
| AGGCGATCAAGTAGATCAAT+GGG | + | chr3.1:46279427-46279446 | None:intergenic | 40.0% | |
| AGTGCTTCCATGGTTTATGT+AGG | - | chr3.1:46276913-46276932 | MS.gene84545:intron | 40.0% | |
| ATCATGCTGCTCAAGACTTA+GGG | + | chr3.1:46278803-46278822 | None:intergenic | 40.0% | |
| ATCCCAATCTCGACGAAAAA+GGG | + | chr3.1:46278865-46278884 | None:intergenic | 40.0% | |
| ATGGGAGAACTTATGCAAAC+AGG | + | chr3.1:46277117-46277136 | None:intergenic | 40.0% | |
| ATTGGCTGTAATCTAGCAAG+TGG | - | chr3.1:46278151-46278170 | MS.gene84545:intron | 40.0% | |
| CGAATTTCATCCTCAGTGTA+AGG | + | chr3.1:46279469-46279488 | None:intergenic | 40.0% | |
| CGTGTTAATTTCAGAACGCA+GGG | - | chr3.1:46279130-46279149 | MS.gene84545:CDS | 40.0% | |
| CTTCCGAAAAGCTTGTGTTA+AGG | + | chr3.1:46276392-46276411 | None:intergenic | 40.0% | |
| GAATGAGTCAATGACAGCTT+TGG | - | chr3.1:46277668-46277687 | MS.gene84545:intron | 40.0% | |
| GGAACAAATTGACACGAAAG+TGG | - | chr3.1:46279204-46279223 | MS.gene84545:CDS | 40.0% | |
| GGCTATAGGAGTGAGAATTA+AGG | - | chr3.1:46276411-46276430 | MS.gene84545:CDS | 40.0% | |
| GTTGAGTAGAGATGATGAGT+AGG | + | chr3.1:46279447-46279466 | None:intergenic | 40.0% | |
| TAGGCGATCAAGTAGATCAA+TGG | + | chr3.1:46279428-46279447 | None:intergenic | 40.0% | |
| TATCCCAATCTCGACGAAAA+AGG | + | chr3.1:46278866-46278885 | None:intergenic | 40.0% | |
| TCATCAATGAAAAGGACACC+AGG | + | chr3.1:46279265-46279284 | None:intergenic | 40.0% | |
| TCGTGTTAATTTCAGAACGC+AGG | - | chr3.1:46279129-46279148 | MS.gene84545:CDS | 40.0% | |
| TCTAATCACAGCATCTGCTT+TGG | - | chr3.1:46279597-46279616 | MS.gene84545:CDS | 40.0% | |
| TGAAATTCGTGCAGAAGTCA+GGG | - | chr3.1:46279183-46279202 | MS.gene84545:CDS | 40.0% | |
| TGATGTATGTAGGTCCTGTT+TGG | - | chr3.1:46277894-46277913 | MS.gene84545:intron | 40.0% | |
| TTATACAGACTTGCCAATGG+TGG | - | chr3.1:46277519-46277538 | MS.gene84545:intron | 40.0% | |
| TTGGCATGCCAAAAGAGAAA+GGG | - | chr3.1:46279616-46279635 | MS.gene84545:CDS | 40.0% | |
| TTTGGCATGCCAAAAGAGAA+AGG | - | chr3.1:46279615-46279634 | MS.gene84545:CDS | 40.0% | |
| ! | ACTCTAGGAGCAAATTAACC+AGG | + | chr3.1:46277424-46277443 | None:intergenic | 40.0% |
| ! | CTGTCTTTCCCTTTCTCTTT+TGG | + | chr3.1:46279627-46279646 | None:intergenic | 40.0% |
| ! | CTTAACACAAGCTTTTCGGA+AGG | - | chr3.1:46276390-46276409 | MS.gene84545:CDS | 40.0% |
| ! | GGAGACAGTTTATGATTTGG+GGG | - | chr3.1:46276543-46276562 | MS.gene84545:CDS | 40.0% |
| ! | GGGCTTGTTTGAATCAATTC+CGG | + | chr3.1:46278751-46278770 | None:intergenic | 40.0% |
| ! | GTGCTTTTCATTCCTCAATC+GGG | - | chr3.1:46279306-46279325 | MS.gene84545:CDS | 40.0% |
| ! | TGGTGTCCTTTTCATTGATG+AGG | - | chr3.1:46279264-46279283 | MS.gene84545:CDS | 40.0% |
| ! | TTTTACCGTCCTTGATCATC+TGG | + | chr3.1:46276219-46276238 | None:intergenic | 40.0% |
| !! | GGTAAATGAAAGTGCTTCCA+TGG | - | chr3.1:46276903-46276922 | MS.gene84545:intron | 40.0% |
| !! | GTTGGTAGCCACAACTAAAA+TGG | + | chr3.1:46279353-46279372 | None:intergenic | 40.0% |
| !! | TCGAGGGATTTTGATGCTAT+GGG | - | chr3.1:46276673-46276692 | MS.gene84545:CDS | 40.0% |
| AACCGCTATTGCAATGGGAA+TGG | - | chr3.1:46276285-46276304 | MS.gene84545:CDS | 45.0% | |
| AAGCTATACCGGTGAGCTAA+TGG | - | chr3.1:46277050-46277069 | MS.gene84545:intron | 45.0% | |
| AAGCTCACTACCAGCAATCA+TGG | + | chr3.1:46276341-46276360 | None:intergenic | 45.0% | |
| AAGTTTGTGCAGTGTCCTGA+TGG | - | chr3.1:46276706-46276725 | MS.gene84545:intron | 45.0% | |
| ACACTGCACAAACTTCACCT+GGG | + | chr3.1:46276701-46276720 | None:intergenic | 45.0% | |
| AGATCAATGGGAATCCCATG+TGG | + | chr3.1:46279415-46279434 | None:intergenic | 45.0% | |
| AGTTCTCCCAAACTGTCTCA+CGG | - | chr3.1:46278046-46278065 | MS.gene84545:intron | 45.0% | |
| ATATACCACCATGCTACCCA+AGG | + | chr3.1:46277545-46277564 | None:intergenic | 45.0% | |
| ATCAAGGACGGTAAAATCGC+CGG | - | chr3.1:46276223-46276242 | MS.gene84545:CDS | 45.0% | |
| ATCAATGGGAATCCCATGTG+GGG | + | chr3.1:46279413-46279432 | None:intergenic | 45.0% | |
| ATCCTCCAGATGATCAAGGA+CGG | - | chr3.1:46276211-46276230 | MS.gene84545:CDS | 45.0% | |
| CAGGGAAGATTACGAAGCTT+GGG | - | chr3.1:46276635-46276654 | MS.gene84545:CDS | 45.0% | |
| CATCATGCTGCTCAAGACTT+AGG | + | chr3.1:46278804-46278823 | None:intergenic | 45.0% | |
| CGAAGATGATTGAGGCGATT+GGG | - | chr3.1:46276566-46276585 | MS.gene84545:CDS | 45.0% | |
| CGTTATCCTCCAGATGATCA+AGG | - | chr3.1:46276207-46276226 | MS.gene84545:CDS | 45.0% | |
| CTCTACTCAACCTTACACTG+AGG | - | chr3.1:46279456-46279475 | MS.gene84545:CDS | 45.0% | |
| GAAGACGTAGACATGAGTGA+AGG | - | chr3.1:46279517-46279536 | MS.gene84545:CDS | 45.0% | |
| GAGAATTAAGGAGGAAACGG+AGG | - | chr3.1:46276423-46276442 | MS.gene84545:CDS | 45.0% | |
| GATCAATGGGAATCCCATGT+GGG | + | chr3.1:46279414-46279433 | None:intergenic | 45.0% | |
| GATTGAAGGTGAGGTTGTTG+AGG | - | chr3.1:46276447-46276466 | MS.gene84545:CDS | 45.0% | |
| GGCAAAACCGCTATTGCAAT+GGG | - | chr3.1:46276280-46276299 | MS.gene84545:CDS | 45.0% | |
| GTGAAATTCGTGCAGAAGTC+AGG | - | chr3.1:46279182-46279201 | MS.gene84545:CDS | 45.0% | |
| TCAGGGAAGATTACGAAGCT+TGG | - | chr3.1:46276634-46276653 | MS.gene84545:CDS | 45.0% | |
| TCATGTCTACGTCTTCCTCT+TGG | + | chr3.1:46279513-46279532 | None:intergenic | 45.0% | |
| TCTGGATATCAGATGCCAAG+AGG | - | chr3.1:46279495-46279514 | MS.gene84545:CDS | 45.0% | |
| TGAAGACGACACCAATGCTA+TGG | - | chr3.1:46279762-46279781 | MS.gene84545:CDS | 45.0% | |
| TGAGGTTCAGATTGATCGTC+CGG | - | chr3.1:46276465-46276484 | MS.gene84545:CDS | 45.0% | |
| TGATGCATCCATTGTGTGCA+TGG | - | chr3.1:46277485-46277504 | MS.gene84545:intron | 45.0% | |
| TGGCAAAACCGCTATTGCAA+TGG | - | chr3.1:46276279-46276298 | MS.gene84545:CDS | 45.0% | |
| TTAGTTGTGGCTACCAACAG+AGG | - | chr3.1:46279355-46279374 | MS.gene84545:CDS | 45.0% | |
| TTTCAGAACGCAGGGATTTC+TGG | - | chr3.1:46279138-46279157 | MS.gene84545:CDS | 45.0% | |
| ! | AGCTTGGGAGATCATTTTCG+CGG | - | chr3.1:46276650-46276669 | MS.gene84545:CDS | 45.0% |
| ! | CAAGCTTTTCGGAAGGCTAT+AGG | - | chr3.1:46276397-46276416 | MS.gene84545:CDS | 45.0% |
| !! | AGAGGCATCACAACTATTCG+AGG | - | chr3.1:46279373-46279392 | MS.gene84545:CDS | 45.0% |
| !! | CGAGGGATTTTGATGCTATG+GGG | - | chr3.1:46276674-46276693 | MS.gene84545:CDS | 45.0% |
| !! | GACCCTTTTTCGTCGAGATT+GGG | - | chr3.1:46278860-46278879 | MS.gene84545:intron | 45.0% |
| !! | GTCGAGGGATTTTGATGCTA+TGG | - | chr3.1:46276672-46276691 | MS.gene84545:CDS | 45.0% |
| !! | TGACCCTTTTTCGTCGAGAT+TGG | - | chr3.1:46278859-46278878 | MS.gene84545:intron | 45.0% |
| !!! | GGATTTCTGGCTCTTTTCAC+CGG | - | chr3.1:46279151-46279170 | MS.gene84545:CDS | 45.0% |
| AACGGAGGTGATTGAAGGTG+AGG | - | chr3.1:46276438-46276457 | MS.gene84545:CDS | 50.0% | |
| AAGCACCCGTGAGACAGTTT+GGG | + | chr3.1:46278055-46278074 | None:intergenic | 50.0% | |
| ACGAATTTCACCCGTGTCAC+CGG | + | chr3.1:46279173-46279192 | None:intergenic | 50.0% | |
| ACTCCTTTCGCCATGATTGC+TGG | - | chr3.1:46276328-46276347 | MS.gene84545:CDS | 50.0% | |
| ATGGGAATGGCGAAATCCCT+CGG | - | chr3.1:46276298-46276317 | MS.gene84545:CDS | 50.0% | |
| CACTGCACAAACTTCACCTG+GGG | + | chr3.1:46276700-46276719 | None:intergenic | 50.0% | |
| CATCCATTGTGTGCATGGTG+AGG | - | chr3.1:46277490-46277509 | MS.gene84545:intron | 50.0% | |
| CGCCATTCCCATTGCAATAG+CGG | + | chr3.1:46276290-46276309 | None:intergenic | 50.0% | |
| CTACCAGCAATCATGGCGAA+AGG | + | chr3.1:46276334-46276353 | None:intergenic | 50.0% | |
| CTACCTCACCATGCACACAA+TGG | + | chr3.1:46277496-46277515 | None:intergenic | 50.0% | |
| CTCAAGACTTAGGGCTGACT+TGG | + | chr3.1:46278794-46278813 | None:intergenic | 50.0% | |
| CTCTTCTGCAACTCACCATC+AGG | + | chr3.1:46276724-46276743 | None:intergenic | 50.0% | |
| GAAAGGAGTCTCAAGACCGA+GGG | + | chr3.1:46276317-46276336 | None:intergenic | 50.0% | |
| GAAGGAGAAGGTGACAAGTG+GGG | - | chr3.1:46276588-46276607 | MS.gene84545:CDS | 50.0% | |
| GACACTGCACAAACTTCACC+TGG | + | chr3.1:46276702-46276721 | None:intergenic | 50.0% | |
| GACGTTGAAGTCGACAGAGA+TGG | - | chr3.1:46276522-46276541 | MS.gene84545:CDS | 50.0% | |
| GAGGAAACGGAGGTGATTGA+AGG | - | chr3.1:46276433-46276452 | MS.gene84545:CDS | 50.0% | |
| GATCATCTGGAGGATAACGC+CGG | + | chr3.1:46276206-46276225 | None:intergenic | 50.0% | |
| GATGATTGAGGCGATTGGGA+AGG | - | chr3.1:46276570-46276589 | MS.gene84545:CDS | 50.0% | |
| GCGAAGATGATTGAGGCGAT+TGG | - | chr3.1:46276565-46276584 | MS.gene84545:CDS | 50.0% | |
| GGAAGGAGAAGGTGACAAGT+GGG | - | chr3.1:46276587-46276606 | MS.gene84545:CDS | 50.0% | |
| GTGGCAGAGTGGAAAGAAGA+AGG | - | chr3.1:46279223-46279242 | MS.gene84545:CDS | 50.0% | |
| GTTCTCCCAAACTGTCTCAC+GGG | - | chr3.1:46278047-46278066 | MS.gene84545:intron | 50.0% | |
| TAAGCACCCGTGAGACAGTT+TGG | + | chr3.1:46278056-46278075 | None:intergenic | 50.0% | |
| TACCGTCCTTGATCATCTGG+AGG | + | chr3.1:46276216-46276235 | None:intergenic | 50.0% | |
| TGACCCATTGTTGCCGAGAT+CGG | - | chr3.1:46277595-46277614 | MS.gene84545:intron | 50.0% | |
| TGAGTTGCAGAAGAGGAAGG+AGG | - | chr3.1:46276729-46276748 | MS.gene84545:intron | 50.0% | |
| TGGTGAGTTGCAGAAGAGGA+AGG | - | chr3.1:46276726-46276745 | MS.gene84545:intron | 50.0% | |
| TTCATTCCTCAATCGGGCTC+TGG | - | chr3.1:46279312-46279331 | MS.gene84545:CDS | 50.0% | |
| TTGACACGAAAGTGGCAGAG+TGG | - | chr3.1:46279212-46279231 | MS.gene84545:CDS | 50.0% | |
| TTTGGGGGCGAAGATGATTG+AGG | - | chr3.1:46276558-46276577 | MS.gene84545:CDS | 50.0% | |
| ! | ATAGCGGTTTTGCCAGTACC+TGG | + | chr3.1:46276274-46276293 | None:intergenic | 50.0% |
| ! | CTGATGGTGAGTTGCAGAAG+AGG | - | chr3.1:46276722-46276741 | MS.gene84545:intron | 50.0% |
| ! | GAGATCATTTTCGCGGTCGA+GGG | - | chr3.1:46276657-46276676 | MS.gene84545:CDS | 50.0% |
| !! | TGGTAGTGAGCTTTTCTCGC+TGG | - | chr3.1:46276348-46276367 | MS.gene84545:CDS | 50.0% |
| AAGTGGCCACATCATGCTGC+TGG | - | chr3.1:46278168-46278187 | MS.gene84545:intron | 55.0% | |
| AGACTTGCCAATGGTGGCCT+TGG | - | chr3.1:46277525-46277544 | MS.gene84545:intron | 55.0% | |
| AGTGGCCACATCATGCTGCT+GGG | - | chr3.1:46278169-46278188 | MS.gene84545:intron | 55.0% | |
| ATGCTACCCAAGGCCACCAT+TGG | + | chr3.1:46277535-46277554 | None:intergenic | 55.0% | |
| CATTCTCCAGAGCCCGATTG+AGG | + | chr3.1:46279321-46279340 | None:intergenic | 55.0% | |
| CGAAAGGAGTCTCAAGACCG+AGG | + | chr3.1:46276318-46276337 | None:intergenic | 55.0% | |
| CTAAGGAAGAGTCGAGACCG+AGG | + | chr3.1:46276129-46276148 | None:intergenic | 55.0% | |
| CTCCCGATCTCGGCAACAAT+GGG | + | chr3.1:46277601-46277620 | None:intergenic | 55.0% | |
| GACCCATTGTTGCCGAGATC+GGG | - | chr3.1:46277596-46277615 | MS.gene84545:intron | 55.0% | |
| GACTTGCCAATGGTGGCCTT+GGG | - | chr3.1:46277526-46277545 | MS.gene84545:intron | 55.0% | |
| GGAAAGGCAGAGATTGTGCC+TGG | - | chr3.1:46279244-46279263 | MS.gene84545:CDS | 55.0% | |
| GGGAAGGAGAAGGTGACAAG+TGG | - | chr3.1:46276586-46276605 | MS.gene84545:CDS | 55.0% | |
| GGTTCAGATTGATCGTCCGG+CGG | - | chr3.1:46276468-46276487 | MS.gene84545:CDS | 55.0% | |
| GTTGCAGAAGAGGAAGGAGG+TGG | - | chr3.1:46276732-46276751 | MS.gene84545:intron | 55.0% | |
| TCGACGAAAAAGGGTCAGCG+AGG | + | chr3.1:46278856-46278875 | None:intergenic | 55.0% | |
| TCGGCAACAATGGGTCAGCA+AGG | + | chr3.1:46277592-46277611 | None:intergenic | 55.0% | |
| TCTCCCGATCTCGGCAACAA+TGG | + | chr3.1:46277602-46277621 | None:intergenic | 55.0% | |
| TGAGGCGATTGGGAAGGAGA+AGG | - | chr3.1:46276576-46276595 | MS.gene84545:CDS | 55.0% | |
| TGTGTCCCAGCAGCATGATG+TGG | + | chr3.1:46278177-46278196 | None:intergenic | 55.0% | |
| TTTGCCAGTACCTGGCTGAC+CGG | + | chr3.1:46276266-46276285 | None:intergenic | 55.0% | |
| ! | AATGGTGGCCTTGGGTAGCA+TGG | - | chr3.1:46277534-46277553 | MS.gene84545:intron | 55.0% |
| ! | GCTCTTTTCACCGGTGACAC+GGG | - | chr3.1:46279160-46279179 | MS.gene84545:CDS | 55.0% |
| ! | GGAGATCATTTTCGCGGTCG+AGG | - | chr3.1:46276656-46276675 | MS.gene84545:CDS | 55.0% |
| ! | GGCTCTTTTCACCGGTGACA+CGG | - | chr3.1:46279159-46279178 | MS.gene84545:CDS | 55.0% |
| ! | TTTTGATGCTATGGGGCCCC+AGG | - | chr3.1:46276681-46276700 | MS.gene84545:intron | 55.0% |
| AAGAGTCGAGACCGAGGCCA+CGG | + | chr3.1:46276123-46276142 | None:intergenic | 60.0% | |
| CACTCACACATCCGTGGCCT+CGG | - | chr3.1:46276109-46276128 | MS.gene84545:CDS | 60.0% | |
| CATCTGGAGGATAACGCCGG+CGG | + | chr3.1:46276203-46276222 | None:intergenic | 60.0% | |
| CGGCTTTACGAGCGGAGACT+TGG | + | chr3.1:46276183-46276202 | None:intergenic | 60.0% | |
| CTAACGCGCATAGAGCGCGT+GGG | - | chr3.1:46276082-46276101 | MS.gene84545:CDS | 60.0% | |
| CTCTATGCGCGTTAGGTCGC+GGG | + | chr3.1:46276077-46276096 | None:intergenic | 60.0% | |
| GACTTGGCCGACCATGCCTT+CGG | + | chr3.1:46276167-46276186 | None:intergenic | 60.0% | |
| GCACTCGCTTCTCCCGATCT+CGG | + | chr3.1:46277611-46277630 | None:intergenic | 60.0% | |
| GCTCTATGCGCGTTAGGTCG+CGG | + | chr3.1:46276078-46276097 | None:intergenic | 60.0% | |
| GGAGCACACTCACACATCCG+TGG | - | chr3.1:46276103-46276122 | MS.gene84545:CDS | 60.0% | |
| TCAGATTGATCGTCCGGCGG+TGG | - | chr3.1:46276471-46276490 | MS.gene84545:CDS | 60.0% | |
| AACGCCGGCGGCTTTACGAG+CGG | + | chr3.1:46276191-46276210 | None:intergenic | 65.0% | |
| ATTGATCGTCCGGCGGTGGC+TGG | - | chr3.1:46276475-46276494 | MS.gene84545:CDS | 65.0% | |
| CCACGCGCTCTATGCGCGTT+AGG | + | chr3.1:46276084-46276103 | None:intergenic | 65.0% | |
| CCTAACGCGCATAGAGCGCG+TGG | - | chr3.1:46276081-46276100 | MS.gene84545:CDS | 65.0% | |
| GCCGACCATGCCTTCGGAGA+CGG | + | chr3.1:46276161-46276180 | None:intergenic | 65.0% | |
| GTCTCCGCTCGTAAAGCCGC+CGG | - | chr3.1:46276184-46276203 | MS.gene84545:CDS | 65.0% | |
| ! | GCCGTCTCCGAAGGCATGGT+CGG | - | chr3.1:46276157-46276176 | MS.gene84545:CDS | 65.0% |
| ! | GGTGGCCTTGGGTAGCATGG+TGG | - | chr3.1:46277537-46277556 | MS.gene84545:intron | 65.0% |
| ACGCGCCGTCTCCGAAGGCA+TGG | - | chr3.1:46276153-46276172 | MS.gene84545:CDS | 70.0% | |
| ATGCCTTCGGAGACGGCGCG+TGG | + | chr3.1:46276154-46276173 | None:intergenic | 70.0% | |
| CAGTACCTGGCTGACCGGCG+AGG | + | chr3.1:46276261-46276280 | None:intergenic | 70.0% | |
| CTCGCCGGTCAGCCAGGTAC+TGG | - | chr3.1:46276259-46276278 | MS.gene84545:CDS | 70.0% | |
| CTGGAGCTGCGGCGAAGACG+GGG | - | chr3.1:46276494-46276513 | MS.gene84545:CDS | 70.0% | |
| GCTGGAGCTGCGGCGAAGAC+GGG | - | chr3.1:46276493-46276512 | MS.gene84545:CDS | 70.0% | |
| GGACGCGCTGTTCTCCTCGC+CGG | - | chr3.1:46276244-46276263 | MS.gene84545:CDS | 70.0% | |
| GGCGAGGAGAACAGCGCGTC+CGG | + | chr3.1:46276245-46276264 | None:intergenic | 70.0% | |
| GGCTGGAGCTGCGGCGAAGA+CGG | - | chr3.1:46276492-46276511 | MS.gene84545:CDS | 70.0% | |
| GTTCTCCTCGCCGGTCAGCC+AGG | - | chr3.1:46276253-46276272 | MS.gene84545:CDS | 70.0% | |
| ! | GGAGACGGCGCGTGGCTCTA+AGG | + | chr3.1:46276146-46276165 | None:intergenic | 70.0% |
| GAGCCACGCGCCGTCTCCGA+AGG | - | chr3.1:46276148-46276167 | MS.gene84545:CDS | 75.0% | |
| TCCGGCGGTGGCTGGAGCTG+CGG | - | chr3.1:46276483-46276502 | MS.gene84545:CDS | 75.0% | |
| ! | GCCGCAGCTCCAGCCACCGC+CGG | + | chr3.1:46276487-46276506 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 46276049 | 46279792 | 46276049 | ID=MS.gene84545 |
| chr3.1 | mRNA | 46276049 | 46279792 | 46276049 | ID=MS.gene84545.t1;Parent=MS.gene84545 |
| chr3.1 | exon | 46279044 | 46279792 | 46279044 | ID=MS.gene84545.t1.exon1;Parent=MS.gene84545.t1 |
| chr3.1 | CDS | 46279044 | 46279792 | 46279044 | ID=cds.MS.gene84545.t1;Parent=MS.gene84545.t1 |
| chr3.1 | exon | 46276049 | 46276697 | 46276049 | ID=MS.gene84545.t1.exon2;Parent=MS.gene84545.t1 |
| chr3.1 | CDS | 46276049 | 46276697 | 46276049 | ID=cds.MS.gene84545.t1;Parent=MS.gene84545.t1 |
| Gene Sequence |
| Protein sequence |
