Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08084.t1 | XP_003600480.1 | 99.8 | 465 | 1 | 0 | 1 | 465 | 1 | 465 | 1.60E-254 | 888.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08084.t1 | Q9DE27 | 76.4 | 461 | 107 | 2 | 1 | 461 | 4 | 462 | 9.5e-200 | 697.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08084.t1 | G7J268 | 99.8 | 465 | 1 | 0 | 1 | 465 | 1 | 465 | 1.1e-254 | 888.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene055437 | MS.gene08084 | PPI |
| MS.gene08109 | MS.gene08084 | PPI |
| MS.gene04079 | MS.gene08084 | PPI |
| MS.gene08084 | MS.gene050408 | PPI |
| MS.gene012829 | MS.gene08084 | PPI |
| MS.gene08084 | MS.gene072703 | PPI |
| MS.gene04418 | MS.gene08084 | PPI |
| MS.gene022650 | MS.gene08084 | PPI |
| MS.gene32832 | MS.gene08084 | PPI |
| MS.gene08084 | MS.gene28806 | PPI |
| MS.gene05640 | MS.gene08084 | PPI |
| MS.gene08084 | MS.gene037838 | PPI |
| MS.gene07047 | MS.gene08084 | PPI |
| MS.gene37440 | MS.gene08084 | PPI |
| MS.gene08084 | MS.gene015034 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08084.t1 | MTR_3g061640 | 99.785 | 465 | 1 | 0 | 1 | 465 | 1 | 465 | 0.0 | 946 |
| MS.gene08084.t1 | MTR_3g104080 | 44.206 | 466 | 233 | 7 | 1 | 448 | 1 | 457 | 1.93e-127 | 377 |
| MS.gene08084.t1 | MTR_6g023370 | 40.570 | 456 | 236 | 7 | 4 | 448 | 1 | 432 | 1.39e-103 | 316 |
| MS.gene08084.t1 | MTR_3g104080 | 43.750 | 368 | 180 | 7 | 99 | 448 | 1 | 359 | 1.73e-91 | 282 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08084.t1 | AT5G67630 | 85.867 | 467 | 62 | 1 | 1 | 463 | 1 | 467 | 0.0 | 805 |
| MS.gene08084.t1 | AT3G49830 | 79.601 | 451 | 91 | 1 | 1 | 450 | 1 | 451 | 0.0 | 748 |
| MS.gene08084.t1 | AT5G22330 | 43.791 | 459 | 245 | 5 | 1 | 448 | 1 | 457 | 3.90e-126 | 374 |
Find 126 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCTTTCCCTTTCTCTTT+TGG | 0.168943 | 3.3:+49524450 | None:intergenic |
| TTTCAGAACGCAGGGATTTC+TGG | 0.205436 | 3.3:-49524936 | MS.gene08084:intron |
| AGATGTTTCTACACCTATTT+TGG | 0.215981 | 3.3:+49524517 | None:intergenic |
| GTTGGTAGCCACAACTAAAA+TGG | 0.256258 | 3.3:+49524724 | None:intergenic |
| AAGCATTTGTTAACCAAAAT+AGG | 0.257783 | 3.3:-49524530 | MS.gene08084:CDS |
| GGATGAAATTCGCAAAATTC+TGG | 0.273264 | 3.3:-49524597 | MS.gene08084:CDS |
| ATGGAGACGGTTTATGATTT+GGG | 0.291625 | 3.3:-49528039 | MS.gene08084:CDS |
| GTGAAATTCGTGCGGAAGTC+AGG | 0.292635 | 3.3:-49524892 | MS.gene08084:CDS |
| GGCTATAGGAGTGAGAATTA+AGG | 0.320370 | 3.3:-49528169 | MS.gene08084:CDS |
| GATGGAGACGGTTTATGATT+TGG | 0.333382 | 3.3:-49528040 | MS.gene08084:CDS |
| TTGAATTGGATGATATTAAT+CGG | 0.343045 | 3.3:-49524427 | MS.gene08084:CDS |
| ATTGCAATTGATAAGGCTTC+AGG | 0.345450 | 3.3:-49527964 | MS.gene08084:CDS |
| AAAGGGAAAGACAGTTGAAT+TGG | 0.347244 | 3.3:-49524441 | MS.gene08084:CDS |
| CAATACATGTTCAGTGAAAC+AGG | 0.377429 | 3.3:-49524344 | MS.gene08084:CDS |
| CTCTATGCGCGTTAGGTCGC+GGG | 0.381377 | 3.3:+49528506 | None:intergenic |
| GGAGACGGCGCGTGGCTCTA+AGG | 0.387209 | 3.3:+49528437 | None:intergenic |
| CGGCTTTGCGAGCTGAGACT+TGG | 0.391892 | 3.3:+49528400 | None:intergenic |
| CGAATTTCATCCTCAGTGTA+AGG | 0.394218 | 3.3:+49524608 | None:intergenic |
| ACTCCTTTCGCCATGATTGC+TGG | 0.398150 | 3.3:-49528252 | MS.gene08084:CDS |
| GGCTGGAGCTGCGGCGAAGA+CGG | 0.399233 | 3.3:-49528088 | MS.gene08084:CDS |
| GGCGAGAAGAACAGCGCGTC+CGG | 0.402500 | 3.3:+49528338 | None:intergenic |
| GCTGGAGCTGCGGCGAAGAC+GGG | 0.407291 | 3.3:-49528087 | MS.gene08084:CDS |
| TTCATTCCTCAATCGGGCTC+TGG | 0.407946 | 3.3:-49524762 | MS.gene08084:CDS |
| CCACGCGCTCTATGCGCGTT+AGG | 0.424297 | 3.3:+49528499 | None:intergenic |
| CACTCACACATCCGTGGCCT+CGG | 0.425854 | 3.3:-49528471 | MS.gene08084:CDS |
| AAGATCGACACAGTACTTGA+TGG | 0.429777 | 3.3:-49524378 | MS.gene08084:CDS |
| TCTAATCACAGCATCTGCTT+TGG | 0.431645 | 3.3:-49524477 | MS.gene08084:CDS |
| GCTCTATGCGCGTTAGGTCG+CGG | 0.432519 | 3.3:+49528505 | None:intergenic |
| GCCGCAGCTCCAGCCACCGC+TGG | 0.437442 | 3.3:+49528096 | None:intergenic |
| CGAAGATGATTGAGGCGATT+GGG | 0.440792 | 3.3:-49528014 | MS.gene08084:CDS |
| CTCGCCGGTCAGCCAGGTAC+TGG | 0.441713 | 3.3:-49528321 | MS.gene08084:CDS |
| CTCTTCTGCAACTCACCATC+AGG | 0.442493 | 3.3:+49527859 | None:intergenic |
| GCGAAGATGATTGAGGCGAT+TGG | 0.445428 | 3.3:-49528015 | MS.gene08084:CDS |
| GTTCTTCTCGCCGGTCAGCC+AGG | 0.456290 | 3.3:-49528327 | MS.gene08084:CDS |
| TGAATTGGATGATATTAATC+GGG | 0.459515 | 3.3:-49524426 | MS.gene08084:CDS |
| TCAGGGAAGATTACGAAGCT+TGG | 0.461687 | 3.3:-49527946 | MS.gene08084:CDS |
| CAGGGAAGATTACGAAGCTT+GGG | 0.462304 | 3.3:-49527945 | MS.gene08084:CDS |
| ATTGATAGACCAGCGGTGGC+TGG | 0.463469 | 3.3:-49528105 | MS.gene08084:CDS |
| AGTGAGAATTAAGGAGGAAA+CGG | 0.465530 | 3.3:-49528160 | MS.gene08084:CDS |
| GCCGACCATGCCTTCGGAGA+CGG | 0.465787 | 3.3:+49528422 | None:intergenic |
| GAGGAAACGGAGGTGATTGA+AGG | 0.467645 | 3.3:-49528147 | MS.gene08084:CDS |
| GTTGAGTAGAGATGATGAGT+AGG | 0.468747 | 3.3:+49524630 | None:intergenic |
| GGCAAAACCGCTATTGCAAT+GGG | 0.477742 | 3.3:-49528300 | MS.gene08084:CDS |
| CATTCTCCAGAGCCCGATTG+AGG | 0.480580 | 3.3:+49524756 | None:intergenic |
| CTTCCGAAAAGCTTGTGTTA+AGG | 0.481406 | 3.3:+49528191 | None:intergenic |
| TTGGTAGCCACAACTAAAAT+GGG | 0.483901 | 3.3:+49524725 | None:intergenic |
| GACTTGGCCGACCATGCCTT+CGG | 0.487532 | 3.3:+49528416 | None:intergenic |
| GTGGCAGAGTGGAAAGAAGA+AGG | 0.488801 | 3.3:-49524851 | MS.gene08084:CDS |
| CGCCATTCCCATTGCAATAG+CGG | 0.489903 | 3.3:+49528293 | None:intergenic |
| TAGGCGATCAAGTAGATCAA+TGG | 0.491544 | 3.3:+49524649 | None:intergenic |
| ACGAATTTCACCCGTGTCAC+CGG | 0.492418 | 3.3:+49524904 | None:intergenic |
| AAGCTCACTACCAGCAATCA+TGG | 0.493183 | 3.3:+49528242 | None:intergenic |
| GACGTTGAAGTCGACGGAGA+TGG | 0.495632 | 3.3:-49528058 | MS.gene08084:CDS |
| GTCTCAGCTCGCAAAGCCGC+CGG | 0.498243 | 3.3:-49528396 | MS.gene08084:CDS |
| TGGCAAAACCGCTATTGCAA+TGG | 0.507380 | 3.3:-49528301 | MS.gene08084:CDS |
| AGGCGATCAAGTAGATCAAT+GGG | 0.510466 | 3.3:+49524650 | None:intergenic |
| TGATGTGATTGCAATTGATA+AGG | 0.511528 | 3.3:-49527971 | MS.gene08084:CDS |
| TCATGTCTACGTCTTCCTCT+TGG | 0.512507 | 3.3:+49524564 | None:intergenic |
| ACCAGCGGTGGCTGGAGCTG+CGG | 0.517048 | 3.3:-49528097 | MS.gene08084:CDS |
| TTTGCCAGTACCTGGCTGAC+CGG | 0.518638 | 3.3:+49528317 | None:intergenic |
| AGATTGATGTTATTAATAGC+AGG | 0.523322 | 3.3:-49527804 | MS.gene08084:intron |
| TTGCAATTGATAAGGCTTCA+GGG | 0.528887 | 3.3:-49527963 | MS.gene08084:CDS |
| TGTGTACCTCATCAATGAAA+AGG | 0.533089 | 3.3:+49524804 | None:intergenic |
| GGACGCGCTGTTCTTCTCGC+CGG | 0.535941 | 3.3:-49528336 | MS.gene08084:CDS |
| TTTGGCATGCCAAAAGAGAA+AGG | 0.542916 | 3.3:-49524459 | MS.gene08084:CDS |
| GAGCCACGCGCCGTCTCCGA+AGG | 0.543555 | 3.3:-49528432 | MS.gene08084:CDS |
| TGGAGACGGTTTATGATTTG+GGG | 0.546299 | 3.3:-49528038 | MS.gene08084:CDS |
| GGAAAGGCAGAGATTGTGCC+TGG | 0.550110 | 3.3:-49524830 | MS.gene08084:CDS |
| AACCGCTATTGCAATGGGAA+TGG | 0.556997 | 3.3:-49528295 | MS.gene08084:CDS |
| AACGGAGGTGATTGAAGGTG+AGG | 0.557415 | 3.3:-49528142 | MS.gene08084:CDS |
| AAGAGTCGAGACCGAGGCCA+CGG | 0.559879 | 3.3:+49528460 | None:intergenic |
| CTGGAGCTGCGGCGAAGACG+GGG | 0.560612 | 3.3:-49528086 | MS.gene08084:CDS |
| TATAGGAGTGAGAATTAAGG+AGG | 0.560876 | 3.3:-49528166 | MS.gene08084:CDS |
| TTGGCATGCCAAAAGAGAAA+GGG | 0.561252 | 3.3:-49524458 | MS.gene08084:CDS |
| TGAAATTCGTGCGGAAGTCA+GGG | 0.561292 | 3.3:-49524891 | MS.gene08084:CDS |
| AAGTTTGTGCAGTGTCCTGA+TGG | 0.565334 | 3.3:-49527874 | MS.gene08084:CDS |
| ATGGGAATGGCGAAATCCCT+CGG | 0.565356 | 3.3:-49528282 | MS.gene08084:CDS |
| GAAGTCGACGGAGATGGAGA+CGG | 0.565872 | 3.3:-49528052 | MS.gene08084:CDS |
| GCCGTCTCCGAAGGCATGGT+CGG | 0.566014 | 3.3:-49528423 | MS.gene08084:CDS |
| CCTAACGCGCATAGAGCGCG+TGG | 0.566275 | 3.3:-49528499 | MS.gene08084:CDS |
| AGATGCTGTGATTAGATGAA+TGG | 0.566370 | 3.3:+49524484 | None:intergenic |
| ACGCGCCGTCTCCGAAGGCA+TGG | 0.570079 | 3.3:-49528427 | MS.gene08084:CDS |
| TGGTGAGTTGCAGAAGAGGA+AGG | 0.574351 | 3.3:-49527854 | MS.gene08084:CDS |
| TTGTGTTGATTTCAGAACGC+AGG | 0.574925 | 3.3:-49524945 | MS.gene08084:intron |
| ATGCCTTCGGAGACGGCGCG+TGG | 0.577386 | 3.3:+49528429 | None:intergenic |
| AGAGGCATCACAACTATTCG+AGG | 0.577787 | 3.3:-49524701 | MS.gene08084:CDS |
| ATTTCACTGGACCATAGCAT+TGG | 0.578908 | 3.3:+49524301 | None:intergenic |
| ATCAAAGACGGTAAAATCGC+CGG | 0.580823 | 3.3:-49528357 | MS.gene08084:CDS |
| TGTGTTGATTTCAGAACGCA+GGG | 0.585684 | 3.3:-49524944 | MS.gene08084:intron |
| AATAGTTGTGATGCCTCTGT+TGG | 0.588977 | 3.3:+49524706 | None:intergenic |
| GGAACAAATTGACACGAAAG+TGG | 0.589018 | 3.3:-49524870 | MS.gene08084:CDS |
| AGAGTGGAAAGAAGAAGGAA+AGG | 0.593025 | 3.3:-49524846 | MS.gene08084:CDS |
| GAGAATTAAGGAGGAAACGG+AGG | 0.595347 | 3.3:-49528157 | MS.gene08084:CDS |
| TGAGTTGCAGAAGAGGAAGG+AGG | 0.595760 | 3.3:-49527851 | MS.gene08084:CDS |
| ACAAATTACAAATCCCCACA+TGG | 0.598468 | 3.3:-49524677 | MS.gene08084:CDS |
| GATGATTGAGGCGATTGGGA+AGG | 0.606012 | 3.3:-49528010 | MS.gene08084:CDS |
| GGAGACGGTTTATGATTTGG+GGG | 0.606487 | 3.3:-49528037 | MS.gene08084:CDS |
| TGAAGACGACACCAATGCTA+TGG | 0.611055 | 3.3:-49524312 | MS.gene08084:CDS |
| CTGATGGTGAGTTGCAGAAG+AGG | 0.612555 | 3.3:-49527858 | MS.gene08084:CDS |
| GATTGAAGGTGAGGTTGTCG+AGG | 0.613656 | 3.3:-49528133 | MS.gene08084:CDS |
| GTTGCAGAAGAGGAAGGAGG+TGG | 0.615066 | 3.3:-49527848 | MS.gene08084:CDS |
| CTACCAGCAATCATGGCGAA+AGG | 0.622667 | 3.3:+49528249 | None:intergenic |
| GATCAATGGGAATCCCATGT+GGG | 0.625545 | 3.3:+49524663 | None:intergenic |
| TTAGTTGTGGCTACCAACAG+AGG | 0.628149 | 3.3:-49524719 | MS.gene08084:CDS |
| GAAAGGAGTCTCAAGACCGA+GGG | 0.644534 | 3.3:+49528266 | None:intergenic |
| CACTGCACAAACTTCACCTG+AGG | 0.646673 | 3.3:+49527883 | None:intergenic |
| GGAGCACACTCACACATCCG+TGG | 0.647608 | 3.3:-49528477 | MS.gene08084:CDS |
| CGAAAGGAGTCTCAAGACCG+AGG | 0.650449 | 3.3:+49528265 | None:intergenic |
| GGGAAGGAGAAAGTGACGAG+TGG | 0.652009 | 3.3:-49527994 | MS.gene08084:CDS |
| TTGACACGAAAGTGGCAGAG+TGG | 0.654228 | 3.3:-49524862 | MS.gene08084:CDS |
| GAAGTTGACGTTGAAGTCGA+CGG | 0.656423 | 3.3:-49528064 | MS.gene08084:CDS |
| AGATCAATGGGAATCCCATG+TGG | 0.657627 | 3.3:+49524662 | None:intergenic |
| TCATCAATGAAAAGGACACC+AGG | 0.662622 | 3.3:+49524812 | None:intergenic |
| GAAGACGTAGACATGAGTGA+AGG | 0.670929 | 3.3:-49524557 | MS.gene08084:CDS |
| TCAGATTGATAGACCAGCGG+TGG | 0.673585 | 3.3:-49528109 | MS.gene08084:CDS |
| ATCAATGGGAATCCCATGTG+GGG | 0.673789 | 3.3:+49524664 | None:intergenic |
| ATACTTCAGATGATCAAAGA+CGG | 0.678778 | 3.3:-49528369 | MS.gene08084:CDS |
| CAAATTACAAATCCCCACAT+GGG | 0.679587 | 3.3:-49524676 | MS.gene08084:CDS |
| CTAACGCGCATAGAGCGCGT+GGG | 0.688219 | 3.3:-49528498 | MS.gene08084:CDS |
| TCTGGATATCAGATGCCAAG+AGG | 0.689336 | 3.3:-49524579 | MS.gene08084:CDS |
| CTAAGGAAGAGTCGAGACCG+AGG | 0.699482 | 3.3:+49528454 | None:intergenic |
| GATCATCTGAAGTATGACGC+CGG | 0.702838 | 3.3:+49528377 | None:intergenic |
| GGTTCAGATTGATAGACCAG+CGG | 0.723335 | 3.3:-49528112 | MS.gene08084:CDS |
| CATCTGAAGTATGACGCCGG+CGG | 0.725040 | 3.3:+49528380 | None:intergenic |
| CTCTACTCAACCTTACACTG+AGG | 0.741639 | 3.3:-49524618 | MS.gene08084:CDS |
| TGACACGGGTGAAATTCGTG+CGG | 0.743682 | 3.3:-49524900 | MS.gene08084:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATTTCTAAATTTATTTT+AGG | - | chr3.3:49525671-49525690 | MS.gene08084:intron | 10.0% |
| !!! | TATTTTTAAAACATTTTGTA+TGG | - | chr3.3:49525644-49525663 | MS.gene08084:intron | 10.0% |
| !! | AAATGTTAAGTCATATAAAA+AGG | - | chr3.3:49526905-49526924 | MS.gene08084:intron | 15.0% |
| !! | ATATGAAATAAAAACTAAAC+AGG | + | chr3.3:49526426-49526445 | None:intergenic | 15.0% |
| !! | TAATATAAAGCTAATTAACA+AGG | + | chr3.3:49526955-49526974 | None:intergenic | 15.0% |
| !! | TGAAAATAAAATAAGACTAT+CGG | - | chr3.3:49526458-49526477 | MS.gene08084:intron | 15.0% |
| !!! | TGTTAATTAGCTTTATATTA+AGG | - | chr3.3:49526955-49526974 | MS.gene08084:intron | 15.0% |
| !!! | TTTATATGACTTAACATTTT+GGG | + | chr3.3:49526904-49526923 | None:intergenic | 15.0% |
| !!! | TTTTATATGACTTAACATTT+TGG | + | chr3.3:49526905-49526924 | None:intergenic | 15.0% |
| !! | AAAGATGAAATATAGTCAAA+CGG | - | chr3.3:49525219-49525238 | MS.gene08084:intron | 20.0% |
| !! | ATAGATCTGTGTTAAAAATT+TGG | - | chr3.3:49527404-49527423 | MS.gene08084:intron | 20.0% |
| !! | ATTAAAACAAACTCATCATA+CGG | + | chr3.3:49527362-49527381 | None:intergenic | 20.0% |
| !! | CAAAAAAAGTTATCAAATAG+CGG | - | chr3.3:49526269-49526288 | MS.gene08084:intron | 20.0% |
| !! | CAAATTATGAAAAGCAAAAA+AGG | + | chr3.3:49525075-49525094 | None:intergenic | 20.0% |
| !! | GGTAAATTAAAGATTATCAA+TGG | - | chr3.3:49526994-49527013 | MS.gene08084:intron | 20.0% |
| !! | TAAAAGCTTTCATAAGATTT+GGG | - | chr3.3:49526147-49526166 | MS.gene08084:intron | 20.0% |
| !! | TTAAAGCTTTCATAAGATTT+GGG | - | chr3.3:49526091-49526110 | MS.gene08084:intron | 20.0% |
| !! | TTGAATTGGATGATATTAAT+CGG | - | chr3.3:49528408-49528427 | MS.gene08084:CDS | 20.0% |
| !! | TTTCAACTAAAATCAAATAG+CGG | + | chr3.3:49525608-49525627 | None:intergenic | 20.0% |
| !!! | AAATTTATTTTAGGGCATTT+TGG | - | chr3.3:49525680-49525699 | MS.gene08084:intron | 20.0% |
| !!! | AATTTATTTTAGGGCATTTT+GGG | - | chr3.3:49525681-49525700 | MS.gene08084:intron | 20.0% |
| !!! | TAAGGTAATGTTTGTTTTTA+TGG | - | chr3.3:49526973-49526992 | MS.gene08084:intron | 20.0% |
| !!! | TTATATGACTTAACATTTTG+GGG | + | chr3.3:49526903-49526922 | None:intergenic | 20.0% |
| !!! | TTGATCAGTTCTAAAAAATT+TGG | - | chr3.3:49526534-49526553 | MS.gene08084:intron | 20.0% |
| !!! | TTTAAAGCTTTCATAAGATT+TGG | - | chr3.3:49526090-49526109 | MS.gene08084:intron | 20.0% |
| ! | AAATCATACCAACATAAATC+AGG | + | chr3.3:49525153-49525172 | None:intergenic | 25.0% |
| ! | AATATCTTGAAAACAGCTTA+TGG | - | chr3.3:49527120-49527139 | MS.gene08084:intron | 25.0% |
| ! | AATCATACCAACATAAATCA+GGG | + | chr3.3:49525152-49525171 | None:intergenic | 25.0% |
| ! | ACTAATCCAAAACAAATCAT+TGG | + | chr3.3:49527318-49527337 | None:intergenic | 25.0% |
| ! | ACTTCAGAAAAGAGATATTA+TGG | + | chr3.3:49527230-49527249 | None:intergenic | 25.0% |
| ! | AGATTGATGTTATTAATAGC+AGG | - | chr3.3:49525031-49525050 | MS.gene08084:intron | 25.0% |
| ! | CTTCAGAAAAGAGATATTAT+GGG | + | chr3.3:49527229-49527248 | None:intergenic | 25.0% |
| ! | GAAGTTATAGTTTGAGTAAT+TGG | - | chr3.3:49525420-49525439 | MS.gene08084:intron | 25.0% |
| ! | GTAAAAGCTTTCATAAGATT+TGG | - | chr3.3:49526146-49526165 | MS.gene08084:intron | 25.0% |
| ! | TATCGTTTGTTTATTCAAAC+AGG | + | chr3.3:49527031-49527050 | None:intergenic | 25.0% |
| ! | TCAAATAAGGCAATCTAAAT+AGG | - | chr3.3:49527203-49527222 | MS.gene08084:intron | 25.0% |
| ! | TGAATTGGATGATATTAATC+GGG | - | chr3.3:49528409-49528428 | MS.gene08084:CDS | 25.0% |
| ! | TTAATCATAGTAGTCAATTG+CGG | + | chr3.3:49526356-49526375 | None:intergenic | 25.0% |
| ! | TTGAAATTGAAAACAGCTTA+TGG | - | chr3.3:49525307-49525326 | MS.gene08084:intron | 25.0% |
| !! | AAGCATTTGTTAACCAAAAT+AGG | - | chr3.3:49528305-49528324 | MS.gene08084:CDS | 25.0% |
| !! | ACTTTTAACACAAGAAAAAG+AGG | + | chr3.3:49527842-49527861 | None:intergenic | 25.0% |
| !! | TACAAAGTTTTACATCTGTA+AGG | + | chr3.3:49527782-49527801 | None:intergenic | 25.0% |
| !! | TATTAAATTTTCCAGCTTGT+TGG | - | chr3.3:49527800-49527819 | MS.gene08084:intron | 25.0% |
| !!! | AAATTTGGTTGTTTCTTTGA+TGG | - | chr3.3:49526549-49526568 | MS.gene08084:intron | 25.0% |
| !!! | ATTTATTTTAGGGCATTTTG+GGG | - | chr3.3:49525682-49525701 | MS.gene08084:intron | 25.0% |
| AAATATTTCCATTAGCTCAC+CGG | + | chr3.3:49525288-49525307 | None:intergenic | 30.0% | |
| AACTACATAGTAGTCAATAG+CGG | - | chr3.3:49525441-49525460 | MS.gene08084:intron | 30.0% | |
| AAGTCCTTCAAGATAACTTA+TGG | + | chr3.3:49527095-49527114 | None:intergenic | 30.0% | |
| AATGCCAAAAATCAAAAGAG+AGG | + | chr3.3:49525799-49525818 | None:intergenic | 30.0% | |
| AATGTTTCCCTGATTTATGT+TGG | - | chr3.3:49525142-49525161 | MS.gene08084:intron | 30.0% | |
| ACAGAGAAATCATAAAACAG+AGG | + | chr3.3:49525760-49525779 | None:intergenic | 30.0% | |
| AGAGATAATATCGACCTAAT+CGG | + | chr3.3:49525395-49525414 | None:intergenic | 30.0% | |
| AGATTATCAATGGTGTATGT+AGG | - | chr3.3:49527004-49527023 | MS.gene08084:intron | 30.0% | |
| AGTTTATACAGACTTACCAA+TGG | - | chr3.3:49526678-49526697 | MS.gene08084:intron | 30.0% | |
| ATACTTCAGATGATCAAAGA+CGG | - | chr3.3:49524466-49524485 | MS.gene08084:CDS | 30.0% | |
| ATCGATAGTGAATAAGTCAA+TGG | - | chr3.3:49526823-49526842 | MS.gene08084:intron | 30.0% | |
| CTAAATCGTCAAACAAAACT+TGG | + | chr3.3:49526625-49526644 | None:intergenic | 30.0% | |
| CTAGTAGAAAAGCTCAAATA+AGG | - | chr3.3:49527190-49527209 | MS.gene08084:intron | 30.0% | |
| GTAAATCCTCATACAAAACT+TGG | + | chr3.3:49527494-49527513 | None:intergenic | 30.0% | |
| GTTTCCATAAGTTATCTTGA+AGG | - | chr3.3:49527088-49527107 | MS.gene08084:intron | 30.0% | |
| TAACATTGCAATACAACTCT+AGG | + | chr3.3:49526601-49526620 | None:intergenic | 30.0% | |
| TATAGTGGTATGACAAATAG+TGG | + | chr3.3:49525965-49525984 | None:intergenic | 30.0% | |
| TCAAATAAGTGAATCCGATT+AGG | - | chr3.3:49525378-49525397 | MS.gene08084:intron | 30.0% | |
| TGATGTGATTGCAATTGATA+AGG | - | chr3.3:49524864-49524883 | MS.gene08084:CDS | 30.0% | |
| TTCAACATAGTAGTCAATCT+CGG | + | chr3.3:49526036-49526055 | None:intergenic | 30.0% | |
| TTGTGTTAAAAGTTGCTTCT+TGG | - | chr3.3:49527849-49527868 | MS.gene08084:CDS | 30.0% | |
| ! | ACATCTGTAAGGAATGATTT+TGG | + | chr3.3:49527771-49527790 | None:intergenic | 30.0% |
| ! | TTTTGTGAGGTGATCATTTT+TGG | - | chr3.3:49527608-49527627 | MS.gene08084:intron | 30.0% |
| ! | TTTTTGTGGTGTGATTGTTT+TGG | - | chr3.3:49526728-49526747 | MS.gene08084:intron | 30.0% |
| !! | ACTTAACATTTTGGGGAAAA+AGG | + | chr3.3:49526896-49526915 | None:intergenic | 30.0% |
| !! | AGATGTTTCTACACCTATTT+TGG | + | chr3.3:49528321-49528340 | None:intergenic | 30.0% |
| !! | CTTAACATTTTGGGGAAAAA+GGG | + | chr3.3:49526895-49526914 | None:intergenic | 30.0% |
| !! | TAATTGCGTGACTTTGAAAT+TGG | - | chr3.3:49527378-49527397 | MS.gene08084:intron | 30.0% |
| !! | TCGGGTTTACAATTTGTTTT+TGG | - | chr3.3:49528427-49528446 | MS.gene08084:CDS | 30.0% |
| !!! | CATGATGCTTTATTTTTGTG+AGG | - | chr3.3:49527595-49527614 | MS.gene08084:intron | 30.0% |
| !!! | CATGGTGGTATATTTTTTTG+TGG | - | chr3.3:49526714-49526733 | MS.gene08084:intron | 30.0% |
| !!! | GTTGAACCAATGATTTGTTT+TGG | - | chr3.3:49527309-49527328 | MS.gene08084:intron | 30.0% |
| !!! | TGTTCCTCTCTTTTGATTTT+TGG | - | chr3.3:49525792-49525811 | MS.gene08084:intron | 30.0% |
| AAAGGGAAAGACAGTTGAAT+TGG | - | chr3.3:49528394-49528413 | MS.gene08084:CDS | 35.0% | |
| AATATTTCCATTAGCTCACC+GGG | + | chr3.3:49525287-49525306 | None:intergenic | 35.0% | |
| ACAAATTACAAATCCCCACA+TGG | - | chr3.3:49528158-49528177 | MS.gene08084:CDS | 35.0% | |
| AGATGCTGTGATTAGATGAA+TGG | + | chr3.3:49528354-49528373 | None:intergenic | 35.0% | |
| AGTGAGAATTAAGGAGGAAA+CGG | - | chr3.3:49524675-49524694 | MS.gene08084:CDS | 35.0% | |
| ATGGAGACGGTTTATGATTT+GGG | - | chr3.3:49524796-49524815 | MS.gene08084:CDS | 35.0% | |
| ATTGCAATTGATAAGGCTTC+AGG | - | chr3.3:49524871-49524890 | MS.gene08084:CDS | 35.0% | |
| ATTGGCTATAATCTAGCAAG+TGG | - | chr3.3:49527263-49527282 | MS.gene08084:intron | 35.0% | |
| CAAATTACAAATCCCCACAT+GGG | - | chr3.3:49528159-49528178 | MS.gene08084:CDS | 35.0% | |
| CAATACATGTTCAGTGAAAC+AGG | - | chr3.3:49528491-49528510 | MS.gene08084:CDS | 35.0% | |
| CTTACAATTTGTGCATGATG+TGG | - | chr3.3:49527521-49527540 | MS.gene08084:intron | 35.0% | |
| GGATGAAATTCGCAAAATTC+TGG | - | chr3.3:49528238-49528257 | MS.gene08084:CDS | 35.0% | |
| TATAGGAGTGAGAATTAAGG+AGG | - | chr3.3:49524669-49524688 | MS.gene08084:CDS | 35.0% | |
| TGTGTACCTCATCAATGAAA+AGG | + | chr3.3:49528034-49528053 | None:intergenic | 35.0% | |
| TTATACAGACTTACCAATGG+TGG | - | chr3.3:49526681-49526700 | MS.gene08084:intron | 35.0% | |
| TTGAGCTTATGAGCCTATAT+GGG | + | chr3.3:49525362-49525381 | None:intergenic | 35.0% | |
| TTGCAATTGATAAGGCTTCA+GGG | - | chr3.3:49524872-49524891 | MS.gene08084:CDS | 35.0% | |
| TTTGAGCTTATGAGCCTATA+TGG | + | chr3.3:49525363-49525382 | None:intergenic | 35.0% | |
| ! | AAGCCTTAACACAAGCTTTT+CGG | - | chr3.3:49524641-49524660 | MS.gene08084:CDS | 35.0% |
| ! | ACCAAATTGACTCTGTTCTA+CGG | - | chr3.3:49525714-49525733 | MS.gene08084:intron | 35.0% |
| ! | ACTCTAGGAGTAAATTAACC+AGG | + | chr3.3:49526586-49526605 | None:intergenic | 35.0% |
| ! | AGTGCTTTTCATTCCTCAAT+CGG | - | chr3.3:49528066-49528085 | MS.gene08084:CDS | 35.0% |
| ! | GGAATGATTTTGGACAGAAA+AGG | + | chr3.3:49527761-49527780 | None:intergenic | 35.0% |
| ! | TTGGTAGCCACAACTAAAAT+GGG | + | chr3.3:49528113-49528132 | None:intergenic | 35.0% |
| !! | TACTCTCCAAGTTTTGTATG+AGG | - | chr3.3:49527485-49527504 | MS.gene08084:intron | 35.0% |
| !!! | AATGTCTCCCATTTTAGTTG+TGG | - | chr3.3:49528103-49528122 | MS.gene08084:CDS | 35.0% |
| !!! | TGTTGTGTGACTTTTGAAAC+TGG | - | chr3.3:49526507-49526526 | MS.gene08084:intron | 35.0% |
| !!! | TTGATGGTTTTGAAGATTCC+TGG | - | chr3.3:49526565-49526584 | MS.gene08084:intron | 35.0% |
| AAATCAAATAGCGGCTGAAG+CGG | + | chr3.3:49525599-49525618 | None:intergenic | 40.0% | |
| AAGATCGACACAGTACTTGA+TGG | - | chr3.3:49528457-49528476 | MS.gene08084:CDS | 40.0% | |
| AATAGTTGTGATGCCTCTGT+TGG | + | chr3.3:49528132-49528151 | None:intergenic | 40.0% | |
| ACCGTAGAACAGAGTCAATT+TGG | + | chr3.3:49525718-49525737 | None:intergenic | 40.0% | |
| ACGCTAAGAGCAAATTAGTC+AGG | + | chr3.3:49527455-49527474 | None:intergenic | 40.0% | |
| AGAGTGGAAAGAAGAAGGAA+AGG | - | chr3.3:49527989-49528008 | MS.gene08084:CDS | 40.0% | |
| AGCTAAACAAACCAACAAGC+TGG | + | chr3.3:49527814-49527833 | None:intergenic | 40.0% | |
| AGGCGATCAAGTAGATCAAT+GGG | + | chr3.3:49528188-49528207 | None:intergenic | 40.0% | |
| ATCAAAGACGGTAAAATCGC+CGG | - | chr3.3:49524478-49524497 | MS.gene08084:CDS | 40.0% | |
| ATCATGCTGCTCAAGACTTA+GGG | + | chr3.3:49527581-49527600 | None:intergenic | 40.0% | |
| ATCCCAATCTCGACGAAAAA+GGG | + | chr3.3:49527644-49527663 | None:intergenic | 40.0% | |
| CGAATTTCATCCTCAGTGTA+AGG | + | chr3.3:49528230-49528249 | None:intergenic | 40.0% | |
| CTTATCCAGAACAAATGACG+TGG | + | chr3.3:49526398-49526417 | None:intergenic | 40.0% | |
| CTTCCGAAAAGCTTGTGTTA+AGG | + | chr3.3:49524647-49524666 | None:intergenic | 40.0% | |
| GAATAAGTCAATGGCAGCTT+TGG | - | chr3.3:49526832-49526851 | MS.gene08084:intron | 40.0% | |
| GATGGAGACGGTTTATGATT+TGG | - | chr3.3:49524795-49524814 | MS.gene08084:CDS | 40.0% | |
| GGAACAAATTGACACGAAAG+TGG | - | chr3.3:49527965-49527984 | MS.gene08084:CDS | 40.0% | |
| GGCTATAGGAGTGAGAATTA+AGG | - | chr3.3:49524666-49524685 | MS.gene08084:CDS | 40.0% | |
| GTTGAGTAGAGATGATGAGT+AGG | + | chr3.3:49528208-49528227 | None:intergenic | 40.0% | |
| TAGGCGATCAAGTAGATCAA+TGG | + | chr3.3:49528189-49528208 | None:intergenic | 40.0% | |
| TAGTAGTCAATCTCGGATAG+TGG | + | chr3.3:49526029-49526048 | None:intergenic | 40.0% | |
| TATCCCAATCTCGACGAAAA+AGG | + | chr3.3:49527645-49527664 | None:intergenic | 40.0% | |
| TCATCAATGAAAAGGACACC+AGG | + | chr3.3:49528026-49528045 | None:intergenic | 40.0% | |
| TCTAATCACAGCATCTGCTT+TGG | - | chr3.3:49528358-49528377 | MS.gene08084:CDS | 40.0% | |
| TGGAGACGGTTTATGATTTG+GGG | - | chr3.3:49524797-49524816 | MS.gene08084:CDS | 40.0% | |
| TTGCATAAGCTCTCCCATAT+AGG | - | chr3.3:49525346-49525365 | MS.gene08084:intron | 40.0% | |
| TTGGCATGCCAAAAGAGAAA+GGG | - | chr3.3:49528377-49528396 | MS.gene08084:CDS | 40.0% | |
| TTTGGCATGCCAAAAGAGAA+AGG | - | chr3.3:49528376-49528395 | MS.gene08084:CDS | 40.0% | |
| ! | CTATCCCGCTATAGCATTTT+CGG | - | chr3.3:49526307-49526326 | MS.gene08084:intron | 40.0% |
| ! | CTGTCTTTCCCTTTCTCTTT+TGG | + | chr3.3:49528388-49528407 | None:intergenic | 40.0% |
| ! | CTTAACACAAGCTTTTCGGA+AGG | - | chr3.3:49524645-49524664 | MS.gene08084:CDS | 40.0% |
| ! | GTGCTTTTCATTCCTCAATC+GGG | - | chr3.3:49528067-49528086 | MS.gene08084:CDS | 40.0% |
| ! | TAGTAGTCAATTGCGGATTG+CGG | + | chr3.3:49526349-49526368 | None:intergenic | 40.0% |
| ! | TATCCCGCTATAGCATTTTC+GGG | - | chr3.3:49526308-49526327 | MS.gene08084:intron | 40.0% |
| ! | TGGTGTCCTTTTCATTGATG+AGG | - | chr3.3:49528025-49528044 | MS.gene08084:CDS | 40.0% |
| !! | AGGTGATCATTTTTGGACCT+CGG | - | chr3.3:49527615-49527634 | MS.gene08084:intron | 40.0% |
| !! | GACTAATTTGCTCTTAGCGT+TGG | - | chr3.3:49527455-49527474 | MS.gene08084:intron | 40.0% |
| !! | GCTGTTTTCATAAGCTTTCC+CGG | - | chr3.3:49525266-49525285 | MS.gene08084:intron | 40.0% |
| !! | GTTGGTAGCCACAACTAAAA+TGG | + | chr3.3:49528114-49528133 | None:intergenic | 40.0% |
| !! | TCGAGGGATTTTGATGCTAT+GGG | - | chr3.3:49524928-49524947 | MS.gene08084:CDS | 40.0% |
| !! | TGTGTTGATTTCAGAACGCA+GGG | - | chr3.3:49527891-49527910 | MS.gene08084:CDS | 40.0% |
| !! | TTGTGTTGATTTCAGAACGC+AGG | - | chr3.3:49527890-49527909 | MS.gene08084:CDS | 40.0% |
| !!! | TGTGTGACTTTTGAAACTGG+TGG | - | chr3.3:49526510-49526529 | MS.gene08084:intron | 40.0% |
| AACCGCTATTGCAATGGGAA+TGG | - | chr3.3:49524540-49524559 | MS.gene08084:CDS | 45.0% | |
| AAGCACCAGTGAGACTGTTT+GGG | + | chr3.3:49527167-49527186 | None:intergenic | 45.0% | |
| AAGCTCACTACCAGCAATCA+TGG | + | chr3.3:49524596-49524615 | None:intergenic | 45.0% | |
| AAGTTTGTGCAGTGTCCTGA+TGG | - | chr3.3:49524961-49524980 | MS.gene08084:intron | 45.0% | |
| AGAAGCCACGTCATTTGTTC+TGG | - | chr3.3:49526390-49526409 | MS.gene08084:intron | 45.0% | |
| AGATCAATGGGAATCCCATG+TGG | + | chr3.3:49528176-49528195 | None:intergenic | 45.0% | |
| ATATACCACCATGCTGCTCA+AGG | + | chr3.3:49526707-49526726 | None:intergenic | 45.0% | |
| ATCAATGGGAATCCCATGTG+GGG | + | chr3.3:49528174-49528193 | None:intergenic | 45.0% | |
| CAGGGAAGATTACGAAGCTT+GGG | - | chr3.3:49524890-49524909 | MS.gene08084:CDS | 45.0% | |
| CATCATGCTGCTCAAGACTT+AGG | + | chr3.3:49527582-49527601 | None:intergenic | 45.0% | |
| CGAAGATGATTGAGGCGATT+GGG | - | chr3.3:49524821-49524840 | MS.gene08084:CDS | 45.0% | |
| CGCTACGCTAATTGTCATAG+CGG | - | chr3.3:49525511-49525530 | MS.gene08084:intron | 45.0% | |
| CGCTATGACAATTAGCGTAG+CGG | + | chr3.3:49525513-49525532 | None:intergenic | 45.0% | |
| CTCTACTCAACCTTACACTG+AGG | - | chr3.3:49528217-49528236 | MS.gene08084:CDS | 45.0% | |
| GAAGACGTAGACATGAGTGA+AGG | - | chr3.3:49528278-49528297 | MS.gene08084:CDS | 45.0% | |
| GAAGTTGACGTTGAAGTCGA+CGG | - | chr3.3:49524771-49524790 | MS.gene08084:CDS | 45.0% | |
| GAGAATTAAGGAGGAAACGG+AGG | - | chr3.3:49524678-49524697 | MS.gene08084:CDS | 45.0% | |
| GATCAATGGGAATCCCATGT+GGG | + | chr3.3:49528175-49528194 | None:intergenic | 45.0% | |
| GGCAAAACCGCTATTGCAAT+GGG | - | chr3.3:49524535-49524554 | MS.gene08084:CDS | 45.0% | |
| GGTTCAGATTGATAGACCAG+CGG | - | chr3.3:49524723-49524742 | MS.gene08084:CDS | 45.0% | |
| TAAGCACCAGTGAGACTGTT+TGG | + | chr3.3:49527168-49527187 | None:intergenic | 45.0% | |
| TCAGGGAAGATTACGAAGCT+TGG | - | chr3.3:49524889-49524908 | MS.gene08084:CDS | 45.0% | |
| TCATGTCTACGTCTTCCTCT+TGG | + | chr3.3:49528274-49528293 | None:intergenic | 45.0% | |
| TCTGGATATCAGATGCCAAG+AGG | - | chr3.3:49528256-49528275 | MS.gene08084:CDS | 45.0% | |
| TGAAATTCGTGCGGAAGTCA+GGG | - | chr3.3:49527944-49527963 | MS.gene08084:CDS | 45.0% | |
| TGAAGACGACACCAATGCTA+TGG | - | chr3.3:49528523-49528542 | MS.gene08084:CDS | 45.0% | |
| TGATGCTTCCATTGTGTGCA+TGG | - | chr3.3:49526647-49526666 | MS.gene08084:intron | 45.0% | |
| TGGCAAAACCGCTATTGCAA+TGG | - | chr3.3:49524534-49524553 | MS.gene08084:CDS | 45.0% | |
| TTAGTTGTGGCTACCAACAG+AGG | - | chr3.3:49528116-49528135 | MS.gene08084:CDS | 45.0% | |
| TTTCAGAACGCAGGGATTTC+TGG | - | chr3.3:49527899-49527918 | MS.gene08084:CDS | 45.0% | |
| ! | ATCCCGCTATAGCATTTTCG+GGG | - | chr3.3:49526309-49526328 | MS.gene08084:intron | 45.0% |
| ! | CAAGCTTTTCGGAAGGCTAT+AGG | - | chr3.3:49524652-49524671 | MS.gene08084:CDS | 45.0% |
| ! | GATCATCTGAAGTATGACGC+CGG | + | chr3.3:49524461-49524480 | None:intergenic | 45.0% |
| ! | GGAGACGGTTTATGATTTGG+GGG | - | chr3.3:49524798-49524817 | MS.gene08084:CDS | 45.0% |
| !! | AGAGGCATCACAACTATTCG+AGG | - | chr3.3:49528134-49528153 | MS.gene08084:CDS | 45.0% |
| !! | CGAGGGATTTTGATGCTATG+GGG | - | chr3.3:49524929-49524948 | MS.gene08084:CDS | 45.0% |
| !! | GACCCTTTTTCGTCGAGATT+GGG | - | chr3.3:49527639-49527658 | MS.gene08084:intron | 45.0% |
| !! | GTCGAGGGATTTTGATGCTA+TGG | - | chr3.3:49524927-49524946 | MS.gene08084:CDS | 45.0% |
| !! | TGACCCTTTTTCGTCGAGAT+TGG | - | chr3.3:49527638-49527657 | MS.gene08084:intron | 45.0% |
| !!! | GGATTTCTGGCTCTTTTCAC+CGG | - | chr3.3:49527912-49527931 | MS.gene08084:CDS | 45.0% |
| !! | TTAAAAAAATAATCAAATAT+CGG | - | chr3.3:49525936-49525955 | MS.gene08084:intron | 5.0% |
| !!! | AAATTTCTAAATTTATTTTA+GGG | - | chr3.3:49525672-49525691 | MS.gene08084:intron | 5.0% |
| AACCTCAAAAGGGGGATAGC+GGG | + | chr3.3:49525994-49526013 | None:intergenic | 50.0% | |
| AACGGAGGTGATTGAAGGTG+AGG | - | chr3.3:49524693-49524712 | MS.gene08084:CDS | 50.0% | |
| AAGCTTTCCCGGTGAGCTAA+TGG | - | chr3.3:49525277-49525296 | MS.gene08084:intron | 50.0% | |
| ACGAATTTCACCCGTGTCAC+CGG | + | chr3.3:49527934-49527953 | None:intergenic | 50.0% | |
| ACTCCTTTCGCCATGATTGC+TGG | - | chr3.3:49524583-49524602 | MS.gene08084:CDS | 50.0% | |
| ATGGGAATGGCGAAATCCCT+CGG | - | chr3.3:49524553-49524572 | MS.gene08084:CDS | 50.0% | |
| CAACCTCAAAAGGGGGATAG+CGG | + | chr3.3:49525995-49526014 | None:intergenic | 50.0% | |
| CACTGCACAAACTTCACCTG+AGG | + | chr3.3:49524955-49524974 | None:intergenic | 50.0% | |
| CGACCCCGAAAATGCTATAG+CGG | + | chr3.3:49526315-49526334 | None:intergenic | 50.0% | |
| CGCCATTCCCATTGCAATAG+CGG | + | chr3.3:49524545-49524564 | None:intergenic | 50.0% | |
| CGCTAATTGTCATAGCGGTG+CGG | - | chr3.3:49525516-49525535 | MS.gene08084:intron | 50.0% | |
| CGTAGAGGCCAACCTCAAAA+GGG | + | chr3.3:49526004-49526023 | None:intergenic | 50.0% | |
| CTACCAGCAATCATGGCGAA+AGG | + | chr3.3:49524589-49524608 | None:intergenic | 50.0% | |
| CTACCTCACCATGCACACAA+TGG | + | chr3.3:49526658-49526677 | None:intergenic | 50.0% | |
| CTCAAGACTTAGGGCACACT+TGG | + | chr3.3:49527572-49527591 | None:intergenic | 50.0% | |
| CTCTTCTGCAACTCACCATC+AGG | + | chr3.3:49524979-49524998 | None:intergenic | 50.0% | |
| CTTCCATTGTGTGCATGGTG+AGG | - | chr3.3:49526652-49526671 | MS.gene08084:intron | 50.0% | |
| GAAAGGAGTCTCAAGACCGA+GGG | + | chr3.3:49524572-49524591 | None:intergenic | 50.0% | |
| GACCCCGAAAATGCTATAGC+GGG | + | chr3.3:49526314-49526333 | None:intergenic | 50.0% | |
| GAGGAAACGGAGGTGATTGA+AGG | - | chr3.3:49524688-49524707 | MS.gene08084:CDS | 50.0% | |
| GATGATTGAGGCGATTGGGA+AGG | - | chr3.3:49524825-49524844 | MS.gene08084:CDS | 50.0% | |
| GATTGAAGGTGAGGTTGTCG+AGG | - | chr3.3:49524702-49524721 | MS.gene08084:CDS | 50.0% | |
| GCGAAGATGATTGAGGCGAT+TGG | - | chr3.3:49524820-49524839 | MS.gene08084:CDS | 50.0% | |
| GTAGAGGCCAACCTCAAAAG+GGG | + | chr3.3:49526003-49526022 | None:intergenic | 50.0% | |
| GTGAAATTCGTGCGGAAGTC+AGG | - | chr3.3:49527943-49527962 | MS.gene08084:CDS | 50.0% | |
| GTGCTCTGCAGTTAGTGAAG+TGG | - | chr3.3:49526869-49526888 | MS.gene08084:intron | 50.0% | |
| GTGGCAGAGTGGAAAGAAGA+AGG | - | chr3.3:49527984-49528003 | MS.gene08084:CDS | 50.0% | |
| GTTCTCCCAAACAGTCTCAC+TGG | - | chr3.3:49527159-49527178 | MS.gene08084:intron | 50.0% | |
| TAGAGGCCAACCTCAAAAGG+GGG | + | chr3.3:49526002-49526021 | None:intergenic | 50.0% | |
| TAGTCAATAGCGGCCGATAG+CGG | - | chr3.3:49525451-49525470 | MS.gene08084:intron | 50.0% | |
| TCAGATTGATAGACCAGCGG+TGG | - | chr3.3:49524726-49524745 | MS.gene08084:CDS | 50.0% | |
| TGACACGGGTGAAATTCGTG+CGG | - | chr3.3:49527935-49527954 | MS.gene08084:CDS | 50.0% | |
| TGACCCTTCGTTACCGAGAT+CGG | - | chr3.3:49526758-49526777 | MS.gene08084:intron | 50.0% | |
| TGAGTTGCAGAAGAGGAAGG+AGG | - | chr3.3:49524984-49525003 | MS.gene08084:intron | 50.0% | |
| TGGTGAGTTGCAGAAGAGGA+AGG | - | chr3.3:49524981-49525000 | MS.gene08084:intron | 50.0% | |
| TTCATTCCTCAATCGGGCTC+TGG | - | chr3.3:49528073-49528092 | MS.gene08084:CDS | 50.0% | |
| TTGACACGAAAGTGGCAGAG+TGG | - | chr3.3:49527973-49527992 | MS.gene08084:CDS | 50.0% | |
| TTTGGGGGCGAAGATGATTG+AGG | - | chr3.3:49524813-49524832 | MS.gene08084:CDS | 50.0% | |
| ! | AGCTTGGGAGATCGTTTTCG+CGG | - | chr3.3:49524905-49524924 | MS.gene08084:CDS | 50.0% |
| ! | ATAGCGGTTTTGCCAGTACC+TGG | + | chr3.3:49524529-49524548 | None:intergenic | 50.0% |
| ! | ATGAGATAGCGGCGCTATAG+CGG | - | chr3.3:49525540-49525559 | MS.gene08084:intron | 50.0% |
| ! | CTGATGGTGAGTTGCAGAAG+AGG | - | chr3.3:49524977-49524996 | MS.gene08084:intron | 50.0% |
| ! | TGCTATAGCGGAGCAGATAG+CGG | - | chr3.3:49525573-49525592 | MS.gene08084:intron | 50.0% |
| ! | TTTTGATGCTATGGGGCCTC+AGG | - | chr3.3:49524936-49524955 | MS.gene08084:intron | 50.0% |
| !! | CGCTATAGCATTTTCGGGGT+CGG | - | chr3.3:49526313-49526332 | MS.gene08084:intron | 50.0% |
| !! | GATAGCGGGTTAGCGTATAG+TGG | + | chr3.3:49525980-49525999 | None:intergenic | 50.0% |
| !! | TGGTAGTGAGCTTTTCTCGC+TGG | - | chr3.3:49524603-49524622 | MS.gene08084:CDS | 50.0% |
| AAGTGGCCACATCATGCTGC+TGG | - | chr3.3:49527280-49527299 | MS.gene08084:intron | 55.0% | |
| AGCGGTGCGGTATGAGATAG+CGG | - | chr3.3:49525529-49525548 | MS.gene08084:intron | 55.0% | |
| AGTGGCCACATCATGCTGCT+GGG | - | chr3.3:49527281-49527300 | MS.gene08084:intron | 55.0% | |
| ATGCTGCTCAAGGCCACCAT+TGG | + | chr3.3:49526697-49526716 | None:intergenic | 55.0% | |
| ATTGATAGACCAGCGGTGGC+TGG | - | chr3.3:49524730-49524749 | MS.gene08084:CDS | 55.0% | |
| CATTCTCCAGAGCCCGATTG+AGG | + | chr3.3:49528082-49528101 | None:intergenic | 55.0% | |
| CGAAAGGAGTCTCAAGACCG+AGG | + | chr3.3:49524573-49524592 | None:intergenic | 55.0% | |
| CTAAGGAAGAGTCGAGACCG+AGG | + | chr3.3:49524384-49524403 | None:intergenic | 55.0% | |
| CTCCCGATCTCGGTAACGAA+GGG | + | chr3.3:49526764-49526783 | None:intergenic | 55.0% | |
| CTCCGCTATAGCAGCTGAAG+CGG | + | chr3.3:49525566-49525585 | None:intergenic | 55.0% | |
| GAAGTCGACGGAGATGGAGA+CGG | - | chr3.3:49524783-49524802 | MS.gene08084:CDS | 55.0% | |
| GACCCTTCGTTACCGAGATC+GGG | - | chr3.3:49526759-49526778 | MS.gene08084:intron | 55.0% | |
| GACGTTGAAGTCGACGGAGA+TGG | - | chr3.3:49524777-49524796 | MS.gene08084:CDS | 55.0% | |
| GCACTTGCTTCTCCCGATCT+CGG | + | chr3.3:49526774-49526793 | None:intergenic | 55.0% | |
| GCGTAGAGGCCAACCTCAAA+AGG | + | chr3.3:49526005-49526024 | None:intergenic | 55.0% | |
| GGAAAGGCAGAGATTGTGCC+TGG | - | chr3.3:49528005-49528024 | MS.gene08084:CDS | 55.0% | |
| GGGAAGGAGAAAGTGACGAG+TGG | - | chr3.3:49524841-49524860 | MS.gene08084:CDS | 55.0% | |
| GTTGCAGAAGAGGAAGGAGG+TGG | - | chr3.3:49524987-49525006 | MS.gene08084:intron | 55.0% | |
| TCGACGAAAAAGGGTCACCG+AGG | + | chr3.3:49527635-49527654 | None:intergenic | 55.0% | |
| TCGGTAACGAAGGGTCAGCA+AGG | + | chr3.3:49526755-49526774 | None:intergenic | 55.0% | |
| TCTCCCGATCTCGGTAACGA+AGG | + | chr3.3:49526765-49526784 | None:intergenic | 55.0% | |
| TTTGCCAGTACCTGGCTGAC+CGG | + | chr3.3:49524521-49524540 | None:intergenic | 55.0% | |
| ! | AACCCGCTATCCCCCTTTTG+AGG | - | chr3.3:49525989-49526008 | MS.gene08084:intron | 55.0% |
| ! | AATGGTGGCCTTGAGCAGCA+TGG | - | chr3.3:49526696-49526715 | MS.gene08084:intron | 55.0% |
| ! | CATCTGAAGTATGACGCCGG+CGG | + | chr3.3:49524458-49524477 | None:intergenic | 55.0% |
| ! | GAGATCGTTTTCGCGGTCGA+GGG | - | chr3.3:49524912-49524931 | MS.gene08084:CDS | 55.0% |
| ! | GCTCTTTTCACCGGTGACAC+GGG | - | chr3.3:49527921-49527940 | MS.gene08084:CDS | 55.0% |
| ! | GGCTCTTTTCACCGGTGACA+CGG | - | chr3.3:49527920-49527939 | MS.gene08084:CDS | 55.0% |
| ! | TCTCGGATAGTGGTGCGTAG+AGG | + | chr3.3:49526019-49526038 | None:intergenic | 55.0% |
| !!! | CGCTATCCCCCTTTTGAGGT+TGG | - | chr3.3:49525993-49526012 | MS.gene08084:intron | 55.0% |
| AAGAGTCGAGACCGAGGCCA+CGG | + | chr3.3:49524378-49524397 | None:intergenic | 60.0% | |
| CACTCACACATCCGTGGCCT+CGG | - | chr3.3:49524364-49524383 | MS.gene08084:CDS | 60.0% | |
| CGGCTTTGCGAGCTGAGACT+TGG | + | chr3.3:49524438-49524457 | None:intergenic | 60.0% | |
| CTAACGCGCATAGAGCGCGT+GGG | - | chr3.3:49524337-49524356 | MS.gene08084:CDS | 60.0% | |
| CTCTATGCGCGTTAGGTCGC+GGG | + | chr3.3:49524332-49524351 | None:intergenic | 60.0% | |
| GACTTGGCCGACCATGCCTT+CGG | + | chr3.3:49524422-49524441 | None:intergenic | 60.0% | |
| GCTCTATGCGCGTTAGGTCG+CGG | + | chr3.3:49524333-49524352 | None:intergenic | 60.0% | |
| GGAGCACACTCACACATCCG+TGG | - | chr3.3:49524358-49524377 | MS.gene08084:CDS | 60.0% | |
| GGCCGCTTCAGCTGCTATAG+CGG | - | chr3.3:49525561-49525580 | MS.gene08084:intron | 60.0% | |
| TGCGTCCCAGCAGCATGATG+TGG | + | chr3.3:49527289-49527308 | None:intergenic | 60.0% | |
| ! | GGAGATCGTTTTCGCGGTCG+AGG | - | chr3.3:49524911-49524930 | MS.gene08084:CDS | 60.0% |
| CCACGCGCTCTATGCGCGTT+AGG | + | chr3.3:49524339-49524358 | None:intergenic | 65.0% | |
| CCTAACGCGCATAGAGCGCG+TGG | - | chr3.3:49524336-49524355 | MS.gene08084:CDS | 65.0% | |
| GCCGACCATGCCTTCGGAGA+CGG | + | chr3.3:49524416-49524435 | None:intergenic | 65.0% | |
| GGACGCGCTGTTCTTCTCGC+CGG | - | chr3.3:49524499-49524518 | MS.gene08084:CDS | 65.0% | |
| GGCCGCTATAGCGCCGCTAT+CGG | + | chr3.3:49525467-49525486 | None:intergenic | 65.0% | |
| GGCGAGAAGAACAGCGCGTC+CGG | + | chr3.3:49524500-49524519 | None:intergenic | 65.0% | |
| GTCTCAGCTCGCAAAGCCGC+CGG | - | chr3.3:49524439-49524458 | MS.gene08084:CDS | 65.0% | |
| GTTCTTCTCGCCGGTCAGCC+AGG | - | chr3.3:49524508-49524527 | MS.gene08084:CDS | 65.0% | |
| ! | GCCGTCTCCGAAGGCATGGT+CGG | - | chr3.3:49524412-49524431 | MS.gene08084:CDS | 65.0% |
| ! | GGCCGATAGCGGCGCTATAG+CGG | - | chr3.3:49525462-49525481 | MS.gene08084:intron | 65.0% |
| ! | GGTGGCCTTGAGCAGCATGG+TGG | - | chr3.3:49526699-49526718 | MS.gene08084:intron | 65.0% |
| ! | TTGCGGATTGCGGCGCGTAG+CGG | + | chr3.3:49526339-49526358 | None:intergenic | 65.0% |
| ACCAGCGGTGGCTGGAGCTG+CGG | - | chr3.3:49524738-49524757 | MS.gene08084:CDS | 70.0% | |
| ACGCGCCGTCTCCGAAGGCA+TGG | - | chr3.3:49524408-49524427 | MS.gene08084:CDS | 70.0% | |
| ATGCCTTCGGAGACGGCGCG+TGG | + | chr3.3:49524409-49524428 | None:intergenic | 70.0% | |
| CTCGCCGGTCAGCCAGGTAC+TGG | - | chr3.3:49524514-49524533 | MS.gene08084:CDS | 70.0% | |
| CTGGAGCTGCGGCGAAGACG+GGG | - | chr3.3:49524749-49524768 | MS.gene08084:CDS | 70.0% | |
| GCTGGAGCTGCGGCGAAGAC+GGG | - | chr3.3:49524748-49524767 | MS.gene08084:CDS | 70.0% | |
| GGCTGGAGCTGCGGCGAAGA+CGG | - | chr3.3:49524747-49524766 | MS.gene08084:CDS | 70.0% | |
| TGTCGCCGCTACGCTACGCG+CGG | + | chr3.3:49525488-49525507 | None:intergenic | 70.0% | |
| ! | GGAGACGGCGCGTGGCTCTA+AGG | + | chr3.3:49524401-49524420 | None:intergenic | 70.0% |
| AGCGGCCGCGCGTAGCGTAG+CGG | - | chr3.3:49525480-49525499 | MS.gene08084:intron | 75.0% | |
| GAGCCACGCGCCGTCTCCGA+AGG | - | chr3.3:49524403-49524422 | MS.gene08084:CDS | 75.0% | |
| ! | GCCGCAGCTCCAGCCACCGC+TGG | + | chr3.3:49524742-49524761 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 49524304 | 49528553 | 49524304 | ID=MS.gene08084 |
| chr3.3 | mRNA | 49524304 | 49528553 | 49524304 | ID=MS.gene08084.t1;Parent=MS.gene08084 |
| chr3.3 | exon | 49527805 | 49528553 | 49527805 | ID=MS.gene08084.t1.exon1;Parent=MS.gene08084.t1 |
| chr3.3 | CDS | 49527805 | 49528553 | 49527805 | ID=cds.MS.gene08084.t1;Parent=MS.gene08084.t1 |
| chr3.3 | exon | 49524304 | 49524952 | 49524304 | ID=MS.gene08084.t1.exon2;Parent=MS.gene08084.t1 |
| chr3.3 | CDS | 49524304 | 49524952 | 49524304 | ID=cds.MS.gene08084.t1;Parent=MS.gene08084.t1 |
| Gene Sequence |
| Protein sequence |
