Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037838.t1 | XP_024640354.1 | 99.3 | 444 | 3 | 0 | 1 | 444 | 1 | 444 | 2.90E-250 | 874 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037838.t1 | Q84M92 | 75.7 | 444 | 105 | 1 | 1 | 444 | 1 | 441 | 1.3e-198 | 693.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037838.t1 | A0A396HXX7 | 99.3 | 444 | 3 | 0 | 1 | 444 | 1 | 444 | 2.1e-250 | 874.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037838.t1 | MTR_5g066400 | 99.101 | 445 | 3 | 1 | 1 | 444 | 1 | 445 | 0.0 | 907 |
MS.gene037838.t1 | MTR_8g464900 | 99.301 | 429 | 3 | 0 | 1 | 429 | 1 | 429 | 0.0 | 878 |
MS.gene037838.t1 | MTR_5g066400 | 93.243 | 444 | 3 | 1 | 1 | 444 | 1 | 417 | 0.0 | 840 |
MS.gene037838.t1 | MTR_5g066400 | 98.741 | 397 | 4 | 1 | 1 | 396 | 1 | 397 | 0.0 | 800 |
MS.gene037838.t1 | MTR_8g007440 | 83.908 | 261 | 16 | 3 | 126 | 385 | 33 | 268 | 8.25e-151 | 429 |
MS.gene037838.t1 | MTR_0015s0130 | 37.892 | 446 | 204 | 11 | 1 | 443 | 1 | 376 | 7.56e-94 | 288 |
MS.gene037838.t1 | MTR_2g096840 | 37.220 | 446 | 207 | 10 | 1 | 443 | 1 | 376 | 2.00e-93 | 287 |
MS.gene037838.t1 | MTR_6g004000 | 37.444 | 446 | 206 | 11 | 1 | 443 | 1 | 376 | 1.95e-92 | 284 |
MS.gene037838.t1 | MTR_7g093260 | 36.996 | 446 | 208 | 11 | 1 | 443 | 1 | 376 | 1.06e-91 | 282 |
MS.gene037838.t1 | MTR_3g095530 | 37.220 | 446 | 207 | 11 | 1 | 443 | 1 | 376 | 3.71e-91 | 281 |
MS.gene037838.t1 | MTR_7g026230 | 37.220 | 446 | 207 | 11 | 1 | 443 | 1 | 376 | 5.41e-91 | 281 |
MS.gene037838.t1 | MTR_2g008050 | 36.323 | 446 | 211 | 11 | 1 | 443 | 1 | 376 | 3.17e-90 | 279 |
MS.gene037838.t1 | MTR_7g027185 | 28.000 | 450 | 245 | 8 | 5 | 441 | 2 | 385 | 9.81e-53 | 182 |
MS.gene037838.t1 | MTR_7g027185 | 28.404 | 426 | 227 | 7 | 5 | 418 | 2 | 361 | 3.04e-50 | 174 |
MS.gene037838.t1 | MTR_8g089630 | 29.103 | 457 | 247 | 13 | 9 | 437 | 9 | 416 | 1.18e-47 | 169 |
MS.gene037838.t1 | MTR_7g027185 | 29.101 | 378 | 198 | 6 | 5 | 378 | 2 | 313 | 5.88e-46 | 162 |
MS.gene037838.t1 | MTR_3g030550 | 26.411 | 443 | 239 | 12 | 7 | 443 | 1 | 362 | 1.67e-35 | 135 |
MS.gene037838.t1 | MTR_2g445210 | 23.779 | 471 | 278 | 11 | 9 | 441 | 7 | 434 | 9.70e-29 | 117 |
MS.gene037838.t1 | MTR_8g007445 | 66.250 | 80 | 25 | 1 | 1 | 80 | 1 | 78 | 6.79e-25 | 98.2 |
MS.gene037838.t1 | MTR_8g008540 | 74.138 | 58 | 10 | 1 | 392 | 444 | 21 | 78 | 1.10e-20 | 86.3 |
MS.gene037838.t1 | MTR_5g066390 | 76.923 | 52 | 11 | 1 | 1 | 51 | 1 | 52 | 2.76e-15 | 75.1 |
MS.gene037838.t1 | MTR_3g067945 | 26.891 | 238 | 142 | 8 | 7 | 237 | 19 | 231 | 1.49e-11 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037838.t1 | AT1G18450 | 78.300 | 447 | 88 | 3 | 1 | 444 | 1 | 441 | 0.0 | 752 |
MS.gene037838.t1 | AT3G53750 | 37.220 | 446 | 207 | 10 | 1 | 443 | 1 | 376 | 5.66e-94 | 288 |
MS.gene037838.t1 | AT3G53750 | 37.220 | 446 | 207 | 10 | 1 | 443 | 1 | 376 | 5.66e-94 | 288 |
MS.gene037838.t1 | AT2G37620 | 37.220 | 446 | 207 | 10 | 1 | 443 | 1 | 376 | 5.66e-94 | 288 |
MS.gene037838.t1 | AT2G37620 | 37.220 | 446 | 207 | 10 | 1 | 443 | 1 | 376 | 5.66e-94 | 288 |
MS.gene037838.t1 | AT2G37620 | 37.220 | 446 | 207 | 10 | 1 | 443 | 1 | 376 | 5.66e-94 | 288 |
MS.gene037838.t1 | AT2G37620 | 37.220 | 446 | 207 | 10 | 1 | 443 | 1 | 376 | 5.66e-94 | 288 |
MS.gene037838.t1 | AT3G12110 | 37.892 | 446 | 204 | 11 | 1 | 443 | 1 | 376 | 1.29e-93 | 287 |
MS.gene037838.t1 | AT5G09810 | 38.117 | 446 | 203 | 11 | 1 | 443 | 1 | 376 | 3.15e-93 | 286 |
MS.gene037838.t1 | AT1G49240 | 37.668 | 446 | 205 | 9 | 1 | 443 | 1 | 376 | 1.22e-92 | 285 |
MS.gene037838.t1 | AT3G18780 | 37.668 | 446 | 205 | 9 | 1 | 443 | 1 | 376 | 1.89e-92 | 285 |
MS.gene037838.t1 | AT3G18780 | 37.668 | 446 | 205 | 9 | 1 | 443 | 1 | 376 | 1.89e-92 | 285 |
MS.gene037838.t1 | AT3G46520 | 37.220 | 446 | 207 | 10 | 1 | 443 | 1 | 376 | 4.34e-92 | 283 |
MS.gene037838.t1 | AT3G46520 | 37.220 | 446 | 207 | 10 | 1 | 443 | 1 | 376 | 4.34e-92 | 283 |
MS.gene037838.t1 | AT5G59370 | 37.220 | 446 | 207 | 10 | 1 | 443 | 1 | 376 | 5.16e-92 | 283 |
MS.gene037838.t1 | AT5G59370 | 37.220 | 446 | 207 | 10 | 1 | 443 | 1 | 376 | 5.16e-92 | 283 |
MS.gene037838.t1 | AT2G42100 | 35.440 | 443 | 213 | 8 | 4 | 443 | 5 | 377 | 1.15e-88 | 275 |
MS.gene037838.t1 | AT3G18780 | 36.768 | 427 | 197 | 9 | 1 | 424 | 1 | 357 | 3.65e-82 | 258 |
MS.gene037838.t1 | AT2G42090 | 34.475 | 438 | 207 | 8 | 10 | 443 | 4 | 365 | 3.00e-80 | 253 |
MS.gene037838.t1 | AT2G42170 | 34.699 | 366 | 193 | 7 | 78 | 443 | 9 | 328 | 3.07e-72 | 231 |
MS.gene037838.t1 | AT2G42170 | 34.699 | 366 | 193 | 7 | 78 | 443 | 9 | 328 | 3.07e-72 | 231 |
MS.gene037838.t1 | AT1G73910 | 67.550 | 151 | 40 | 1 | 1 | 151 | 1 | 142 | 1.63e-67 | 212 |
MS.gene037838.t1 | AT1G73910 | 67.550 | 151 | 40 | 1 | 1 | 151 | 1 | 142 | 1.63e-67 | 212 |
MS.gene037838.t1 | AT2G42170 | 33.718 | 347 | 184 | 7 | 78 | 424 | 9 | 309 | 4.08e-62 | 204 |
MS.gene037838.t1 | AT2G42170 | 33.718 | 347 | 184 | 7 | 78 | 424 | 9 | 309 | 4.08e-62 | 204 |
MS.gene037838.t1 | AT3G27000 | 28.603 | 451 | 241 | 9 | 5 | 441 | 2 | 385 | 2.13e-53 | 183 |
MS.gene037838.t1 | AT1G73910 | 68.644 | 118 | 28 | 1 | 1 | 118 | 1 | 109 | 1.70e-49 | 166 |
MS.gene037838.t1 | AT2G42170 | 34.717 | 265 | 128 | 6 | 179 | 443 | 11 | 230 | 6.94e-45 | 156 |
MS.gene037838.t1 | AT1G13180 | 27.887 | 459 | 250 | 12 | 9 | 437 | 8 | 415 | 9.55e-45 | 161 |
MS.gene037838.t1 | AT3G60830 | 25.561 | 446 | 239 | 11 | 7 | 443 | 1 | 362 | 4.39e-31 | 123 |
MS.gene037838.t1 | AT3G33520 | 26.234 | 385 | 221 | 7 | 94 | 442 | 61 | 418 | 9.61e-27 | 112 |
MS.gene037838.t1 | AT3G12380 | 27.660 | 235 | 138 | 7 | 10 | 237 | 22 | 231 | 4.09e-14 | 75.1 |
MS.gene037838.t1 | AT3G12380 | 28.085 | 235 | 143 | 7 | 10 | 237 | 22 | 237 | 5.14e-13 | 71.6 |
Find 119 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCGCAATACCCTTGCTTTCC+AGG | 0.219314 | 8.3:-80431442 | None:intergenic |
AATACGCCCTGGAGAGTTTC+AGG | 0.253290 | 8.3:+80431595 | MS.gene037838:CDS |
GCATTTCACTTTCAGCTTGC+TGG | 0.254209 | 8.3:+80435825 | MS.gene037838:intron |
TATCACAGGACAATTGAAAT+TGG | 0.257174 | 8.3:+80433635 | MS.gene037838:intron |
GGGATATTGTTGACAGCATT+TGG | 0.259925 | 8.3:+80426031 | MS.gene037838:CDS |
GCAACAATTCCATCCTTTAA+TGG | 0.263838 | 8.3:-80426003 | None:intergenic |
TTGTAGCTTTCAGATGTATT+AGG | 0.285708 | 8.3:-80432917 | None:intergenic |
ATGTAAATTGCAGTCAATTC+CGG | 0.286149 | 8.3:+80434859 | MS.gene037838:intron |
TCAGGTGGTGTCTCCATTAA+AGG | 0.291568 | 8.3:+80425990 | MS.gene037838:intron |
TCAAGGTAATTACTCGGATT+TGG | 0.294188 | 8.3:-80438146 | None:intergenic |
AGGAGCATGGGATGCTCTTT+AGG | 0.302704 | 8.3:-80428551 | None:intergenic |
TGAAACCTCGGTATTCCTTT+AGG | 0.316799 | 8.3:+80431564 | MS.gene037838:CDS |
AAACCATCATATGGAGTATC+TGG | 0.319612 | 8.3:-80433066 | None:intergenic |
TTCAGCTATAGTAATTGATC+TGG | 0.360082 | 8.3:+80424675 | MS.gene037838:CDS |
CCACATCATTAGTTGTTGAT+TGG | 0.366348 | 8.3:+80428891 | MS.gene037838:CDS |
ATGCTACTGAAAGGAGGTTT+AGG | 0.372848 | 8.3:+80437260 | MS.gene037838:CDS |
GCATTTGGGATCATGCCTTC+AGG | 0.378731 | 8.3:+80426046 | MS.gene037838:CDS |
TGTAAATTGCAGTCAATTCC+GGG | 0.387922 | 8.3:+80434860 | MS.gene037838:intron |
AACAATATTAGAAATGTTGA+TGG | 0.388533 | 8.3:+80425798 | MS.gene037838:CDS |
TTCAATTATCTTACCATTTG+AGG | 0.388965 | 8.3:-80434926 | None:intergenic |
CAACTCAAGGACACTTCCTT+TGG | 0.395475 | 8.3:-80438315 | None:intergenic |
GGCAGTATATTGGCTTCCCT+TGG | 0.405681 | 8.3:+80438100 | MS.gene037838:CDS |
GGATATTGTTGACAGCATTT+GGG | 0.407969 | 8.3:+80426032 | MS.gene037838:CDS |
GATGGATTGAAAAGAACATC+TGG | 0.409238 | 8.3:-80433677 | None:intergenic |
GTAAGAAATTCTCCTCCAAT+TGG | 0.412742 | 8.3:-80431401 | None:intergenic |
GCTCTTTAGGATCAATCAAT+AGG | 0.412944 | 8.3:-80428538 | None:intergenic |
AGAATTATTTAGTAGCATAC+TGG | 0.414090 | 8.3:+80435301 | MS.gene037838:CDS |
TTTCAATCCATCCCTGGCTC+AGG | 0.414421 | 8.3:+80433688 | MS.gene037838:CDS |
TACAGAAGGAAACACAGCTT+TGG | 0.420996 | 8.3:-80424740 | None:intergenic |
TATGTAGGATCTCAGTCCTT+GGG | 0.423732 | 8.3:+80425849 | MS.gene037838:CDS |
GCGTATTTCCTTTCTCCTAA+AGG | 0.428130 | 8.3:-80431579 | None:intergenic |
TCGGTATTCCTTTAGGAGAA+AGG | 0.431364 | 8.3:+80431571 | MS.gene037838:CDS |
ATTTGGAGAACCACATTTGT+TGG | 0.435174 | 8.3:-80438129 | None:intergenic |
CTGGATTGGAGGCAGTATAT+TGG | 0.435714 | 8.3:+80438090 | MS.gene037838:CDS |
ACAGAAGGAAACACAGCTTT+GGG | 0.447748 | 8.3:-80424739 | None:intergenic |
CTTTCAGCTTGCTGGTGGTA+CGG | 0.449113 | 8.3:+80435833 | MS.gene037838:intron |
TCTGCAACTTACTGGCCATC+AGG | 0.458733 | 8.3:-80433446 | None:intergenic |
CTCATGTGAACTTAGGTTGT+TGG | 0.462020 | 8.3:+80425705 | MS.gene037838:intron |
AGTTCGTGGGCTGCCTCAAA+TGG | 0.472905 | 8.3:+80434913 | MS.gene037838:CDS |
AGATTGCTTGATGAAAAGCC+TGG | 0.475639 | 8.3:+80431424 | MS.gene037838:CDS |
TCAGCTCACAAACCTGAGCC+AGG | 0.478987 | 8.3:-80433700 | None:intergenic |
GCTGTGGCAACGTCTCCAAT+TGG | 0.487799 | 8.3:+80431386 | MS.gene037838:CDS |
ATTGGCAGTGTCTGGATTGG+AGG | 0.490582 | 8.3:+80438079 | MS.gene037838:intron |
CAGGTATACAAACCATCATA+TGG | 0.490698 | 8.3:-80433075 | None:intergenic |
ATATGTAGGATCTCAGTCCT+TGG | 0.492437 | 8.3:+80425848 | MS.gene037838:CDS |
TGTTGGAGCGATTGATCAAA+TGG | 0.503546 | 8.3:+80425722 | MS.gene037838:CDS |
ATTCCATTGCTCAGTGGTGG+AGG | 0.503728 | 8.3:+80430105 | MS.gene037838:intron |
TCTGCAAAGCTCTCCATGCC+CGG | 0.508842 | 8.3:-80434878 | None:intergenic |
GCTGAAAAGAACTCTGGCTC+TGG | 0.511526 | 8.3:+80425765 | MS.gene037838:CDS |
GGCTGCTAGAGTAAAGGTAT+TGG | 0.511652 | 8.3:+80437228 | MS.gene037838:CDS |
CCCTCAGGCTGCTAGAGTAA+AGG | 0.514929 | 8.3:+80437222 | MS.gene037838:CDS |
GTAGCTCATACGATGTCGTT+GGG | 0.515121 | 8.3:-80433424 | None:intergenic |
GGTGATTGCTAGTGATATCA+AGG | 0.517057 | 8.3:+80433026 | MS.gene037838:CDS |
GGTTCACATACTTGTAAAGC+TGG | 0.517258 | 8.3:+80424697 | MS.gene037838:CDS |
TTTATTGGCAGTGTCTGGAT+TGG | 0.519842 | 8.3:+80438076 | MS.gene037838:intron |
CATAATACCTGAAACTCTCC+AGG | 0.520117 | 8.3:-80431602 | None:intergenic |
TGTTGTTGAGCATTAGAAGA+AGG | 0.520384 | 8.3:-80428581 | None:intergenic |
AGGATGGAATTGTTGCTGAC+TGG | 0.520781 | 8.3:+80426010 | MS.gene037838:CDS |
GGATGGAATTGTTGCTGACT+GGG | 0.521437 | 8.3:+80426011 | MS.gene037838:CDS |
ACTTGTAAAGCTGGTTATGC+TGG | 0.525919 | 8.3:+80424706 | MS.gene037838:CDS |
AGGAGAAAGGAAATACGCCC+TGG | 0.526266 | 8.3:+80431584 | MS.gene037838:CDS |
ATTGCAGTCAATTCCGGGCA+TGG | 0.526476 | 8.3:+80434865 | MS.gene037838:intron |
GGAAAGAGAAAATTATATGT+AGG | 0.529853 | 8.3:+80425834 | MS.gene037838:CDS |
TTGGTTCCTTCCAACAAATG+TGG | 0.534619 | 8.3:+80438119 | MS.gene037838:CDS |
AGAAGGCTCTGCAAGGAGCA+TGG | 0.535506 | 8.3:-80428564 | None:intergenic |
TGAGGCAGCCCACGAACTGA+TGG | 0.537968 | 8.3:-80434908 | None:intergenic |
GATGAAAAGCCTGGAAAGCA+AGG | 0.538696 | 8.3:+80431433 | MS.gene037838:CDS |
GAAGGCTCTGCAAGGAGCAT+GGG | 0.539240 | 8.3:-80428563 | None:intergenic |
TTTCACTTTCAGCTTGCTGG+TGG | 0.540017 | 8.3:+80435828 | MS.gene037838:intron |
TCAGCTATAGTAATTGATCT+GGG | 0.540950 | 8.3:+80424676 | MS.gene037838:CDS |
GGAGAACCACATTTGTTGGA+AGG | 0.543183 | 8.3:-80438125 | None:intergenic |
GGCTTCAATGCAACAACTGA+AGG | 0.545651 | 8.3:+80435854 | MS.gene037838:CDS |
TCTGATGCAGGAATCCCCTC+AGG | 0.547564 | 8.3:+80437207 | MS.gene037838:intron |
GCTCCAGATACTCCATATGA+TGG | 0.547700 | 8.3:+80433063 | MS.gene037838:CDS |
GGTAGCTCATACGATGTCGT+TGG | 0.549228 | 8.3:-80433425 | None:intergenic |
CCTTTCAGTAGCATTTCCAC+TGG | 0.562878 | 8.3:-80437251 | None:intergenic |
GAAATCGCTCCATCAGTTCG+TGG | 0.564376 | 8.3:+80434899 | MS.gene037838:CDS |
GTGGCAACGTCTCCAATTGG+AGG | 0.567917 | 8.3:+80431389 | MS.gene037838:CDS |
TCTAATAGATATGAAGAGCA+TGG | 0.569376 | 8.3:+80438280 | MS.gene037838:intron |
CCAATCAACAACTAATGATG+TGG | 0.572658 | 8.3:-80428891 | None:intergenic |
AATCTGACAGACTGTAGACT+TGG | 0.573313 | 8.3:+80432889 | MS.gene037838:intron |
GACGAGGCTGAAAAGAACTC+TGG | 0.578930 | 8.3:+80425759 | MS.gene037838:CDS |
TGTTGATGGTGATAAAGCCA+AGG | 0.582436 | 8.3:+80425812 | MS.gene037838:CDS |
TGATGGCTATGTTCTTCAGA+AGG | 0.588188 | 8.3:+80430152 | MS.gene037838:CDS |
AGAACATAGCCATCATGTAC+CGG | 0.593299 | 8.3:-80430144 | None:intergenic |
CCTTTACTCTAGCAGCCTGA+GGG | 0.593502 | 8.3:-80437222 | None:intergenic |
TTACCTCCATAAAATCTCTA+CGG | 0.597405 | 8.3:-80425875 | None:intergenic |
ACATTTGTTGGAAGGAACCA+AGG | 0.602188 | 8.3:-80438117 | None:intergenic |
ACAGTTGCACCGGTACATGA+TGG | 0.606325 | 8.3:+80430135 | MS.gene037838:CDS |
AAGCTACAAGCTCTACTCCC+AGG | 0.608537 | 8.3:+80432931 | MS.gene037838:CDS |
ACCTTTACTCTAGCAGCCTG+AGG | 0.611663 | 8.3:-80437223 | None:intergenic |
CCTGGAAAGCAAGGGTATTG+CGG | 0.612507 | 8.3:+80431442 | MS.gene037838:CDS |
AAATCGCTCCATCAGTTCGT+GGG | 0.616076 | 8.3:+80434900 | MS.gene037838:CDS |
AGTGCCGTTGCAACTATGTA+CGG | 0.619334 | 8.3:+80424551 | None:intergenic |
AGGATCAACTACAGTTGCAC+CGG | 0.623628 | 8.3:+80430125 | MS.gene037838:CDS |
ATGTAGGATCTCAGTCCTTG+GGG | 0.624981 | 8.3:+80425850 | MS.gene037838:CDS |
GTTGATGGTGATAAAGCCAA+GGG | 0.625274 | 8.3:+80425813 | MS.gene037838:CDS |
ATGAAAAGCCTGGAAAGCAA+GGG | 0.625341 | 8.3:+80431434 | MS.gene037838:CDS |
CATTAGAAGAAGGCTCTGCA+AGG | 0.625798 | 8.3:-80428571 | None:intergenic |
ATGCTCAACAACAGAGAGAG+AGG | 0.628504 | 8.3:+80428591 | MS.gene037838:CDS |
TCACAAACCTGAGCCAGGGA+TGG | 0.628933 | 8.3:-80433695 | None:intergenic |
CCTCTAGCAAGTCTTTCTCA+AGG | 0.629024 | 8.3:-80435881 | None:intergenic |
GTGGTGTCTCCATTAAAGGA+TGG | 0.630945 | 8.3:+80425994 | MS.gene037838:CDS |
ATGGAGCTTCATATATCCAA+AGG | 0.631566 | 8.3:+80438299 | MS.gene037838:CDS |
CCAGTGGAAATGCTACTGAA+AGG | 0.633164 | 8.3:+80437251 | MS.gene037838:CDS |
CAGCTCACAAACCTGAGCCA+GGG | 0.634400 | 8.3:-80433699 | None:intergenic |
CATTTGTTGGAAGGAACCAA+GGG | 0.639612 | 8.3:-80438116 | None:intergenic |
GTTGCAACTATGTACGGTGG+TGG | 0.640142 | 8.3:+80424557 | None:intergenic |
CATATGGAGTATCTGGAGCA+CGG | 0.643740 | 8.3:-80433059 | None:intergenic |
ACATCGTATGAGCTACCTGA+TGG | 0.659142 | 8.3:+80433431 | MS.gene037838:CDS |
AGAGTAAAGGTATTGGCCAG+TGG | 0.666409 | 8.3:+80437235 | MS.gene037838:CDS |
CTTTACTCTAGCAGCCTGAG+GGG | 0.681009 | 8.3:-80437221 | None:intergenic |
GTGGAAATGCTACTGAAAGG+AGG | 0.681158 | 8.3:+80437254 | MS.gene037838:CDS |
TTTCTCCTAAAGGAATACCG+AGG | 0.688869 | 8.3:-80431569 | None:intergenic |
ATAATACCTGAAACTCTCCA+GGG | 0.701084 | 8.3:-80431601 | None:intergenic |
AAAATCTCTACGGTACCCCA+AGG | 0.703671 | 8.3:-80425865 | None:intergenic |
CCTTGAGAAAGACTTGCTAG+AGG | 0.710122 | 8.3:+80435881 | MS.gene037838:CDS |
GCCGTTGCAACTATGTACGG+TGG | 0.734269 | 8.3:+80424554 | None:intergenic |
GGATGTTGATGAATCAGACG+AGG | 0.764479 | 8.3:+80425743 | MS.gene037838:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 80424566 | 80438333 | 80424566 | ID=MS.gene037838 |
chr8.3 | mRNA | 80424566 | 80438333 | 80424566 | ID=MS.gene037838.t1;Parent=MS.gene037838 |
chr8.3 | exon | 80424566 | 80424578 | 80424566 | ID=MS.gene037838.t1.exon1;Parent=MS.gene037838.t1 |
chr8.3 | CDS | 80424566 | 80424578 | 80424566 | ID=cds.MS.gene037838.t1;Parent=MS.gene037838.t1 |
chr8.3 | exon | 80424668 | 80424759 | 80424668 | ID=MS.gene037838.t1.exon2;Parent=MS.gene037838.t1 |
chr8.3 | CDS | 80424668 | 80424759 | 80424668 | ID=cds.MS.gene037838.t1;Parent=MS.gene037838.t1 |
chr8.3 | exon | 80425720 | 80425893 | 80425720 | ID=MS.gene037838.t1.exon3;Parent=MS.gene037838.t1 |
chr8.3 | CDS | 80425720 | 80425893 | 80425720 | ID=cds.MS.gene037838.t1;Parent=MS.gene037838.t1 |
chr8.3 | exon | 80425994 | 80426067 | 80425994 | ID=MS.gene037838.t1.exon4;Parent=MS.gene037838.t1 |
chr8.3 | CDS | 80425994 | 80426067 | 80425994 | ID=cds.MS.gene037838.t1;Parent=MS.gene037838.t1 |
chr8.3 | exon | 80428532 | 80428612 | 80428532 | ID=MS.gene037838.t1.exon5;Parent=MS.gene037838.t1 |
chr8.3 | CDS | 80428532 | 80428612 | 80428532 | ID=cds.MS.gene037838.t1;Parent=MS.gene037838.t1 |
chr8.3 | exon | 80428701 | 80428761 | 80428701 | ID=MS.gene037838.t1.exon6;Parent=MS.gene037838.t1 |
chr8.3 | CDS | 80428701 | 80428761 | 80428701 | ID=cds.MS.gene037838.t1;Parent=MS.gene037838.t1 |
chr8.3 | exon | 80428863 | 80428912 | 80428863 | ID=MS.gene037838.t1.exon7;Parent=MS.gene037838.t1 |
chr8.3 | CDS | 80428863 | 80428912 | 80428863 | ID=cds.MS.gene037838.t1;Parent=MS.gene037838.t1 |
chr8.3 | exon | 80430119 | 80430173 | 80430119 | ID=MS.gene037838.t1.exon8;Parent=MS.gene037838.t1 |
chr8.3 | CDS | 80430119 | 80430173 | 80430119 | ID=cds.MS.gene037838.t1;Parent=MS.gene037838.t1 |
chr8.3 | exon | 80431386 | 80431463 | 80431386 | ID=MS.gene037838.t1.exon9;Parent=MS.gene037838.t1 |
chr8.3 | CDS | 80431386 | 80431463 | 80431386 | ID=cds.MS.gene037838.t1;Parent=MS.gene037838.t1 |
chr8.3 | exon | 80431563 | 80431616 | 80431563 | ID=MS.gene037838.t1.exon10;Parent=MS.gene037838.t1 |
chr8.3 | CDS | 80431563 | 80431616 | 80431563 | ID=cds.MS.gene037838.t1;Parent=MS.gene037838.t1 |
chr8.3 | exon | 80432899 | 80432952 | 80432899 | ID=MS.gene037838.t1.exon11;Parent=MS.gene037838.t1 |
chr8.3 | CDS | 80432899 | 80432952 | 80432899 | ID=cds.MS.gene037838.t1;Parent=MS.gene037838.t1 |
chr8.3 | exon | 80433024 | 80433084 | 80433024 | ID=MS.gene037838.t1.exon12;Parent=MS.gene037838.t1 |
chr8.3 | CDS | 80433024 | 80433084 | 80433024 | ID=cds.MS.gene037838.t1;Parent=MS.gene037838.t1 |
chr8.3 | exon | 80433405 | 80433456 | 80433405 | ID=MS.gene037838.t1.exon13;Parent=MS.gene037838.t1 |
chr8.3 | CDS | 80433405 | 80433456 | 80433405 | ID=cds.MS.gene037838.t1;Parent=MS.gene037838.t1 |
chr8.3 | exon | 80433643 | 80433709 | 80433643 | ID=MS.gene037838.t1.exon14;Parent=MS.gene037838.t1 |
chr8.3 | CDS | 80433643 | 80433709 | 80433643 | ID=cds.MS.gene037838.t1;Parent=MS.gene037838.t1 |
chr8.3 | exon | 80434872 | 80434934 | 80434872 | ID=MS.gene037838.t1.exon15;Parent=MS.gene037838.t1 |
chr8.3 | CDS | 80434872 | 80434934 | 80434872 | ID=cds.MS.gene037838.t1;Parent=MS.gene037838.t1 |
chr8.3 | exon | 80435260 | 80435322 | 80435260 | ID=MS.gene037838.t1.exon16;Parent=MS.gene037838.t1 |
chr8.3 | CDS | 80435260 | 80435322 | 80435260 | ID=cds.MS.gene037838.t1;Parent=MS.gene037838.t1 |
chr8.3 | exon | 80435840 | 80435902 | 80435840 | ID=MS.gene037838.t1.exon17;Parent=MS.gene037838.t1 |
chr8.3 | CDS | 80435840 | 80435902 | 80435840 | ID=cds.MS.gene037838.t1;Parent=MS.gene037838.t1 |
chr8.3 | exon | 80437217 | 80437281 | 80437217 | ID=MS.gene037838.t1.exon18;Parent=MS.gene037838.t1 |
chr8.3 | CDS | 80437217 | 80437281 | 80437217 | ID=cds.MS.gene037838.t1;Parent=MS.gene037838.t1 |
chr8.3 | exon | 80438087 | 80438155 | 80438087 | ID=MS.gene037838.t1.exon19;Parent=MS.gene037838.t1 |
chr8.3 | CDS | 80438087 | 80438155 | 80438087 | ID=cds.MS.gene037838.t1;Parent=MS.gene037838.t1 |
chr8.3 | exon | 80438288 | 80438333 | 80438288 | ID=MS.gene037838.t1.exon20;Parent=MS.gene037838.t1 |
chr8.3 | CDS | 80438288 | 80438333 | 80438288 | ID=cds.MS.gene037838.t1;Parent=MS.gene037838.t1 |
Gene Sequence |
Protein sequence |