Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04400.t1 | XP_003600480.1 | 99.8 | 465 | 1 | 0 | 1 | 465 | 1 | 465 | 1.60E-254 | 888.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04400.t1 | Q9DE27 | 76.4 | 461 | 107 | 2 | 1 | 461 | 4 | 462 | 9.5e-200 | 697.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04400.t1 | G7J268 | 99.8 | 465 | 1 | 0 | 1 | 465 | 1 | 465 | 1.1e-254 | 888.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072703 | MS.gene04400 | PPI |
| MS.gene28806 | MS.gene04400 | PPI |
| MS.gene04418 | MS.gene04400 | PPI |
| MS.gene05640 | MS.gene04400 | PPI |
| MS.gene07047 | MS.gene04400 | PPI |
| MS.gene022650 | MS.gene04400 | PPI |
| MS.gene32832 | MS.gene04400 | PPI |
| MS.gene050408 | MS.gene04400 | PPI |
| MS.gene04079 | MS.gene04400 | PPI |
| MS.gene37440 | MS.gene04400 | PPI |
| MS.gene055437 | MS.gene04400 | PPI |
| MS.gene08109 | MS.gene04400 | PPI |
| MS.gene037838 | MS.gene04400 | PPI |
| MS.gene04400 | MS.gene015034 | PPI |
| MS.gene012829 | MS.gene04400 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04400.t1 | MTR_3g061640 | 99.785 | 465 | 1 | 0 | 1 | 465 | 1 | 465 | 0.0 | 946 |
| MS.gene04400.t1 | MTR_3g104080 | 44.206 | 466 | 233 | 7 | 1 | 448 | 1 | 457 | 1.93e-127 | 377 |
| MS.gene04400.t1 | MTR_6g023370 | 40.570 | 456 | 236 | 7 | 4 | 448 | 1 | 432 | 1.39e-103 | 316 |
| MS.gene04400.t1 | MTR_3g104080 | 43.750 | 368 | 180 | 7 | 99 | 448 | 1 | 359 | 1.73e-91 | 282 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04400.t1 | AT5G67630 | 85.867 | 467 | 62 | 1 | 1 | 463 | 1 | 467 | 0.0 | 805 |
| MS.gene04400.t1 | AT3G49830 | 79.601 | 451 | 91 | 1 | 1 | 450 | 1 | 451 | 0.0 | 748 |
| MS.gene04400.t1 | AT5G22330 | 43.791 | 459 | 245 | 5 | 1 | 448 | 1 | 457 | 3.90e-126 | 374 |
Find 129 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAGAACGCAGGGATTTC+TGG | 0.168140 | 3.4:-57388497 | MS.gene04400:intron |
| CTGTCTTTCCCTTTCTCTTT+TGG | 0.168943 | 3.4:+57388011 | None:intergenic |
| AGATGTTTCTACACCTATTT+TGG | 0.215981 | 3.4:+57388078 | None:intergenic |
| GTTGGTAGCCACAACTAAAA+TGG | 0.256258 | 3.4:+57388285 | None:intergenic |
| ATGGAGACGGTTTATGATTT+GGG | 0.259809 | 3.4:-57390771 | MS.gene04400:CDS |
| AAGCATTTGTTAACCAAAAT+AGG | 0.260222 | 3.4:-57388091 | MS.gene04400:CDS |
| GGATGAAATTCGCAAAATTC+TGG | 0.273264 | 3.4:-57388158 | MS.gene04400:CDS |
| GATGGAGACGGTTTATGATT+TGG | 0.291335 | 3.4:-57390772 | MS.gene04400:CDS |
| GGCTATAGGAGTGAGAATTA+AGG | 0.320370 | 3.4:-57390901 | MS.gene04400:CDS |
| GTGAAATTCGTGCAGAAGTC+AGG | 0.327601 | 3.4:-57388453 | MS.gene04400:CDS |
| TTGAATTGGATGATATTAAT+CGG | 0.343045 | 3.4:-57387988 | MS.gene04400:CDS |
| ATTGCAATTGATAAGGCTTC+AGG | 0.345450 | 3.4:-57390696 | MS.gene04400:CDS |
| AAAGGGAAAGACAGTTGAAT+TGG | 0.347244 | 3.4:-57388002 | MS.gene04400:CDS |
| ACACTCTCACATCCGTGGCC+TGG | 0.354232 | 3.4:-57391204 | MS.gene04400:CDS |
| CACTCTCACATCCGTGGCCT+GGG | 0.369551 | 3.4:-57391203 | MS.gene04400:CDS |
| CAATACATGTTCAGTGAAAC+AGG | 0.377429 | 3.4:-57387905 | MS.gene04400:CDS |
| CTCTATGCGCGTTAGGTCGC+GGG | 0.381377 | 3.4:+57391238 | None:intergenic |
| ATTGATCGTCCGGCGGTGGC+TGG | 0.381879 | 3.4:-57390837 | MS.gene04400:CDS |
| GGAGACGGCGCGTGGCTCTA+AGG | 0.387209 | 3.4:+57391169 | None:intergenic |
| CGAATTTCATCCTCAGTGTA+AGG | 0.394218 | 3.4:+57388169 | None:intergenic |
| ACTCCTTTCGCCATGATTGC+TGG | 0.398150 | 3.4:-57390984 | MS.gene04400:CDS |
| CGGCTTTGCGAGCGGAGACT+TGG | 0.398373 | 3.4:+57391132 | None:intergenic |
| GGCTGGAGCTGCGGCGAAGA+CGG | 0.399233 | 3.4:-57390820 | MS.gene04400:CDS |
| GCTGGAGCTGCGGCGAAGAC+GGG | 0.407291 | 3.4:-57390819 | MS.gene04400:CDS |
| TTCATTCCTCAATCGGGCTC+TGG | 0.407946 | 3.4:-57388323 | MS.gene04400:CDS |
| AGCTAGAAGAACAGCGCGTC+CGG | 0.423976 | 3.4:+57391070 | None:intergenic |
| CCACGCGCTCTATGCGCGTT+AGG | 0.424297 | 3.4:+57391231 | None:intergenic |
| AAGATCGACACAGTACTTGA+TGG | 0.429777 | 3.4:-57387939 | MS.gene04400:CDS |
| TCTAATCACAGCATCTGCTT+TGG | 0.431645 | 3.4:-57388038 | MS.gene04400:CDS |
| GCTCTATGCGCGTTAGGTCG+CGG | 0.432519 | 3.4:+57391237 | None:intergenic |
| CGAAGATGATTGAGGCGATT+GGG | 0.440792 | 3.4:-57390746 | MS.gene04400:CDS |
| CTCTTCTGCAACTCACCATC+AGG | 0.442493 | 3.4:+57390591 | None:intergenic |
| GCGAAGATGATTGAGGCGAT+TGG | 0.445428 | 3.4:-57390747 | MS.gene04400:CDS |
| GGGAAGGAGAAGGTGACAAG+TGG | 0.446271 | 3.4:-57390726 | MS.gene04400:CDS |
| GGACGCGCTGTTCTTCTAGC+TGG | 0.451000 | 3.4:-57391068 | MS.gene04400:CDS |
| CTAGCTGGTCAGCCAGGTAC+TGG | 0.456521 | 3.4:-57391053 | MS.gene04400:CDS |
| TGAATTGGATGATATTAATC+GGG | 0.459515 | 3.4:-57387987 | MS.gene04400:CDS |
| TCAGGGAAGATTACGAAGCT+TGG | 0.461687 | 3.4:-57390678 | MS.gene04400:CDS |
| CAGGGAAGATTACGAAGCTT+GGG | 0.462304 | 3.4:-57390677 | MS.gene04400:CDS |
| AGTGAGAATTAAGGAGGAAA+CGG | 0.465530 | 3.4:-57390892 | MS.gene04400:CDS |
| GCCGACCATGCCTTCGGAGA+CGG | 0.465787 | 3.4:+57391154 | None:intergenic |
| GAGGAAACGGAGGTGATTGA+AGG | 0.467645 | 3.4:-57390879 | MS.gene04400:CDS |
| GTTGAGTAGAGATGATGAGT+AGG | 0.468747 | 3.4:+57388191 | None:intergenic |
| GGCAAAACCGCTATTGCAAT+GGG | 0.477742 | 3.4:-57391032 | MS.gene04400:CDS |
| CATTCTCCAGAGCCCGATTG+AGG | 0.480580 | 3.4:+57388317 | None:intergenic |
| CTTCCGAAAAGCTTGTGTTA+AGG | 0.481406 | 3.4:+57390923 | None:intergenic |
| TTGGTAGCCACAACTAAAAT+GGG | 0.483901 | 3.4:+57388286 | None:intergenic |
| GGAAGGAGAAGGTGACAAGT+GGG | 0.485543 | 3.4:-57390725 | MS.gene04400:CDS |
| GACTTGGCCGACCATGCCTT+CGG | 0.485767 | 3.4:+57391148 | None:intergenic |
| GTGGCAGAGTGGAAAGAAGA+AGG | 0.488801 | 3.4:-57388412 | MS.gene04400:CDS |
| CGCCATTCCCATTGCAATAG+CGG | 0.489903 | 3.4:+57391025 | None:intergenic |
| TAGGCGATCAAGTAGATCAA+TGG | 0.491544 | 3.4:+57388210 | None:intergenic |
| AAGCTCACTACCAGCAATCA+TGG | 0.493183 | 3.4:+57390974 | None:intergenic |
| AGATTGATGTTATTAATAGC+AGG | 0.494305 | 3.4:-57390536 | MS.gene04400:intron |
| ACGAATTTCACCCGTGTCAC+CGG | 0.506863 | 3.4:+57388465 | None:intergenic |
| TGGCAAAACCGCTATTGCAA+TGG | 0.507380 | 3.4:-57391033 | MS.gene04400:CDS |
| AGGCGATCAAGTAGATCAAT+GGG | 0.510466 | 3.4:+57388211 | None:intergenic |
| GGATGTGATTGCAATTGATA+AGG | 0.511528 | 3.4:-57390703 | MS.gene04400:CDS |
| TCATGTCTACGTCTTCCTCT+TGG | 0.512507 | 3.4:+57388125 | None:intergenic |
| GTCTCCGCTCGCAAAGCCGC+CGG | 0.513148 | 3.4:-57391128 | MS.gene04400:CDS |
| GCCGCAGCTCCAGCCACCGC+CGG | 0.514286 | 3.4:+57390828 | None:intergenic |
| TCAGATTGATCGTCCGGCGG+TGG | 0.514313 | 3.4:-57390841 | MS.gene04400:CDS |
| TGAGGTTCAGATTGATCGTC+CGG | 0.515205 | 3.4:-57390847 | MS.gene04400:CDS |
| TTGCAATTGATAAGGCTTCA+GGG | 0.528887 | 3.4:-57390695 | MS.gene04400:CDS |
| TGTGTACCTCATCAATGAAA+AGG | 0.533089 | 3.4:+57388365 | None:intergenic |
| GTTCTTCTAGCTGGTCAGCC+AGG | 0.535119 | 3.4:-57391059 | MS.gene04400:CDS |
| TCCGGCGGTGGCTGGAGCTG+CGG | 0.535910 | 3.4:-57390829 | MS.gene04400:CDS |
| TCGTGTTAATTTCAGAACGC+AGG | 0.541700 | 3.4:-57388506 | MS.gene04400:intron |
| TTTGGCATGCCAAAAGAGAA+AGG | 0.542916 | 3.4:-57388020 | MS.gene04400:CDS |
| GAGCCACGCGCCGTCTCCGA+AGG | 0.543555 | 3.4:-57391164 | MS.gene04400:CDS |
| TGGAGACGGTTTATGATTTG+GGG | 0.546299 | 3.4:-57390770 | MS.gene04400:CDS |
| GGAAAGGCAGAGATTGTGCC+TGG | 0.550110 | 3.4:-57388391 | MS.gene04400:CDS |
| GACGCCGGCGGCTTTGCGAG+CGG | 0.553050 | 3.4:+57391124 | None:intergenic |
| AACCGCTATTGCAATGGGAA+TGG | 0.556997 | 3.4:-57391027 | MS.gene04400:CDS |
| AACGGAGGTGATTGAAGGTG+AGG | 0.557415 | 3.4:-57390874 | MS.gene04400:CDS |
| CTGGAGCTGCGGCGAAGACG+GGG | 0.560612 | 3.4:-57390818 | MS.gene04400:CDS |
| TATAGGAGTGAGAATTAAGG+AGG | 0.560876 | 3.4:-57390898 | MS.gene04400:CDS |
| TTGGCATGCCAAAAGAGAAA+GGG | 0.561252 | 3.4:-57388019 | MS.gene04400:CDS |
| CGTGTTAATTTCAGAACGCA+GGG | 0.562879 | 3.4:-57388505 | MS.gene04400:intron |
| AAGTTTGTGCAGTGTCCTGA+TGG | 0.565334 | 3.4:-57390606 | MS.gene04400:CDS |
| ATGGGAATGGCGAAATCCCT+CGG | 0.565356 | 3.4:-57391014 | MS.gene04400:CDS |
| GCCGTCTCCGAAGGCATGGT+CGG | 0.566014 | 3.4:-57391155 | MS.gene04400:CDS |
| CCTAACGCGCATAGAGCGCG+TGG | 0.566275 | 3.4:-57391231 | MS.gene04400:CDS |
| AGATGCTGTGATTAGATGAA+TGG | 0.566370 | 3.4:+57388045 | None:intergenic |
| ACGCGCCGTCTCCGAAGGCA+TGG | 0.570079 | 3.4:-57391159 | MS.gene04400:CDS |
| TGGTGAGTTGCAGAAGAGGA+AGG | 0.574351 | 3.4:-57390586 | MS.gene04400:CDS |
| GATTGAAGGTGAGGTTGTTG+AGG | 0.575785 | 3.4:-57390865 | MS.gene04400:CDS |
| ATGCCTTCGGAGACGGCGCG+TGG | 0.577386 | 3.4:+57391161 | None:intergenic |
| AGAGGCATCACAACTATTCG+AGG | 0.577787 | 3.4:-57388262 | MS.gene04400:CDS |
| ATTTCACTGGACCATAGCAT+TGG | 0.578908 | 3.4:+57387862 | None:intergenic |
| ATCAAAGACGGTAAAATCGC+CGG | 0.580823 | 3.4:-57391089 | MS.gene04400:CDS |
| TGAAATTCGTGCAGAAGTCA+GGG | 0.588620 | 3.4:-57388452 | MS.gene04400:CDS |
| AATAGTTGTGATGCCTCTGT+TGG | 0.588977 | 3.4:+57388267 | None:intergenic |
| GGAACAAATTGACACGAAAG+TGG | 0.589018 | 3.4:-57388431 | MS.gene04400:CDS |
| AGAGTGGAAAGAAGAAGGAA+AGG | 0.593025 | 3.4:-57388407 | MS.gene04400:CDS |
| AAGAGTCGAGACCCAGGCCA+CGG | 0.593246 | 3.4:+57391192 | None:intergenic |
| GACGTTGAAGTCGACAGAGA+TGG | 0.594302 | 3.4:-57390790 | MS.gene04400:CDS |
| GAGAATTAAGGAGGAAACGG+AGG | 0.595347 | 3.4:-57390889 | MS.gene04400:CDS |
| TGAGTTGCAGAAGAGGAAGG+AGG | 0.595760 | 3.4:-57390583 | MS.gene04400:CDS |
| TGAGGCGATTGGGAAGGAGA+AGG | 0.596968 | 3.4:-57390736 | MS.gene04400:CDS |
| ACAAATTACAAATCCCCACA+TGG | 0.598468 | 3.4:-57388238 | MS.gene04400:CDS |
| GAAGGAGAAGGTGACAAGTG+GGG | 0.598656 | 3.4:-57390724 | MS.gene04400:CDS |
| GATGATTGAGGCGATTGGGA+AGG | 0.606012 | 3.4:-57390742 | MS.gene04400:CDS |
| GGAGACGGTTTATGATTTGG+GGG | 0.606487 | 3.4:-57390769 | MS.gene04400:CDS |
| TGAAGACGACACCAATGCTA+TGG | 0.611055 | 3.4:-57387873 | MS.gene04400:CDS |
| CTGATGGTGAGTTGCAGAAG+AGG | 0.612555 | 3.4:-57390590 | MS.gene04400:CDS |
| GTTGCAGAAGAGGAAGGAGG+TGG | 0.615066 | 3.4:-57390580 | MS.gene04400:CDS |
| CTACCAGCAATCATGGCGAA+AGG | 0.622667 | 3.4:+57390981 | None:intergenic |
| GGAGCACACTCTCACATCCG+TGG | 0.623969 | 3.4:-57391209 | MS.gene04400:CDS |
| GATCAATGGGAATCCCATGT+GGG | 0.625545 | 3.4:+57388224 | None:intergenic |
| TTAGTTGTGGCTACCAACAG+AGG | 0.628149 | 3.4:-57388280 | MS.gene04400:CDS |
| CTAAGGAAGAGTCGAGACCC+AGG | 0.630221 | 3.4:+57391186 | None:intergenic |
| GAAAGGAGTCTCAAGACCGA+GGG | 0.644534 | 3.4:+57390998 | None:intergenic |
| CACTGCACAAACTTCACCTG+AGG | 0.646673 | 3.4:+57390615 | None:intergenic |
| CGAAAGGAGTCTCAAGACCG+AGG | 0.650449 | 3.4:+57390997 | None:intergenic |
| TTGACACGAAAGTGGCAGAG+TGG | 0.654228 | 3.4:-57388423 | MS.gene04400:CDS |
| GAAGACGTAGACATGAGTGA+AGG | 0.655089 | 3.4:-57388118 | MS.gene04400:CDS |
| AGATCAATGGGAATCCCATG+TGG | 0.657627 | 3.4:+57388223 | None:intergenic |
| ATTCTTCAGATGATCAAAGA+CGG | 0.661176 | 3.4:-57391101 | MS.gene04400:CDS |
| TCATCAATGAAAAGGACACC+AGG | 0.662622 | 3.4:+57388373 | None:intergenic |
| GAAGTCGACAGAGATGGAGA+CGG | 0.663443 | 3.4:-57390784 | MS.gene04400:CDS |
| ATCAATGGGAATCCCATGTG+GGG | 0.673789 | 3.4:+57388225 | None:intergenic |
| CAAATTACAAATCCCCACAT+GGG | 0.679587 | 3.4:-57388237 | MS.gene04400:CDS |
| GATCATCTGAAGAATGACGC+CGG | 0.682804 | 3.4:+57391109 | None:intergenic |
| CTAACGCGCATAGAGCGCGT+GGG | 0.688219 | 3.4:-57391230 | MS.gene04400:CDS |
| TCTGGATATCAGATGCCAAG+AGG | 0.689336 | 3.4:-57388140 | MS.gene04400:CDS |
| GGTTCAGATTGATCGTCCGG+CGG | 0.711952 | 3.4:-57390844 | MS.gene04400:CDS |
| CTCTACTCAACCTTACACTG+AGG | 0.741639 | 3.4:-57388179 | MS.gene04400:CDS |
| CATCTGAAGAATGACGCCGG+CGG | 0.742646 | 3.4:+57391112 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAAAAAACATTTTG+GGG | + | chr3.4:57389570-57389589 | None:intergenic | 10.0% |
| !! | AAATGTTAAGTCATATAAAA+AGG | - | chr3.4:57389610-57389629 | MS.gene04400:intron | 15.0% |
| !! | AAATTATGAAAAGCAAAAAA+AGG | + | chr3.4:57388636-57388655 | None:intergenic | 15.0% |
| !! | AATTATGAAAAGCAAAAAAA+GGG | + | chr3.4:57388635-57388654 | None:intergenic | 15.0% |
| !! | ATATGAAATAAAAACTATAC+AGG | + | chr3.4:57389081-57389100 | None:intergenic | 15.0% |
| !!! | AATTATGTTGTTTTTACAAA+TGG | + | chr3.4:57388757-57388776 | None:intergenic | 15.0% |
| !!! | TGTTAATTAGCTTTATATTA+AGG | - | chr3.4:57389661-57389680 | MS.gene04400:intron | 15.0% |
| !! | ATTATGAAAAGCAAAAAAAG+GGG | + | chr3.4:57388634-57388653 | None:intergenic | 20.0% |
| !! | TTGAATTGGATGATATTAAT+CGG | - | chr3.4:57391140-57391159 | MS.gene04400:CDS | 20.0% |
| !!! | ACTAATCTAAAACAAATCAT+TGG | + | chr3.4:57390034-57390053 | None:intergenic | 20.0% |
| !!! | TAAGGTAATGTTTGTTTTTA+TGG | - | chr3.4:57389679-57389698 | MS.gene04400:intron | 20.0% |
| !!! | TATTAAATTTTCCAACTTGT+TGG | - | chr3.4:57390531-57390550 | MS.gene04400:intron | 20.0% |
| !!! | TGAAGTTATGTTTGTTTTTA+GGG | - | chr3.4:57388698-57388717 | MS.gene04400:intron | 20.0% |
| !!! | TTAATAGAAAGTTTTACATC+TGG | + | chr3.4:57390517-57390536 | None:intergenic | 20.0% |
| !!! | TTGAAGTTATGTTTGTTTTT+AGG | - | chr3.4:57388697-57388716 | MS.gene04400:intron | 20.0% |
| !!! | TTGATCAGTTCTAAAAAATT+AGG | - | chr3.4:57389188-57389207 | MS.gene04400:intron | 20.0% |
| ! | ACTTCAGAAAAGAGATATTA+TGG | + | chr3.4:57389946-57389965 | None:intergenic | 25.0% |
| ! | AGATTATCAATGATGTATGT+AGG | - | chr3.4:57389712-57389731 | MS.gene04400:intron | 25.0% |
| ! | AGATTGATGTTATTAATAGC+AGG | - | chr3.4:57388592-57388611 | MS.gene04400:intron | 25.0% |
| ! | ATAGATCTGTGTCAAAAATT+TGG | - | chr3.4:57390119-57390138 | MS.gene04400:intron | 25.0% |
| ! | CTATACTTCTCAATTGTATT+TGG | + | chr3.4:57389143-57389162 | None:intergenic | 25.0% |
| ! | CTTCAGAAAAGAGATATTAT+GGG | + | chr3.4:57389945-57389964 | None:intergenic | 25.0% |
| ! | GAAGTTATAGTTTGAGTAAT+TGG | - | chr3.4:57389009-57389028 | MS.gene04400:intron | 25.0% |
| ! | GTTAAAAGAAACTCATCATA+TGG | + | chr3.4:57390077-57390096 | None:intergenic | 25.0% |
| ! | TCTTATAACTTACATGCAAA+CGG | + | chr3.4:57388831-57388850 | None:intergenic | 25.0% |
| ! | TGAATTGGATGATATTAATC+GGG | - | chr3.4:57391141-57391160 | MS.gene04400:CDS | 25.0% |
| ! | TTGAAATTGAAAACAGCTTA+TGG | - | chr3.4:57388896-57388915 | MS.gene04400:intron | 25.0% |
| !! | AAGCATTTGTTAACCAAAAT+AGG | - | chr3.4:57391037-57391056 | MS.gene04400:CDS | 25.0% |
| !! | TGGTTGTTCTTTTATGTTTT+TGG | - | chr3.4:57390139-57390158 | MS.gene04400:intron | 25.0% |
| !! | TTTTTGTGATGTGATCATTT+TGG | - | chr3.4:57389381-57389400 | MS.gene04400:intron | 25.0% |
| !!! | AAAAAACATTTTGGGGAAAA+AGG | + | chr3.4:57389563-57389582 | None:intergenic | 25.0% |
| !!! | AAAAACATTTTGGGGAAAAA+GGG | + | chr3.4:57389562-57389581 | None:intergenic | 25.0% |
| !!! | AAATTAGGTTGTTTCTTTGA+TGG | - | chr3.4:57389203-57389222 | MS.gene04400:intron | 25.0% |
| !!! | GAATGATTTTAGAGAGAAAA+GGG | + | chr3.4:57390491-57390510 | None:intergenic | 25.0% |
| AATTTATACAGACTTGCCAA+TGG | - | chr3.4:57389332-57389351 | MS.gene04400:intron | 30.0% | |
| ACTGTTTCCATAAGTTATCT+TGG | - | chr3.4:57389793-57389812 | MS.gene04400:intron | 30.0% | |
| AGAGATAATATCGACCTATT+CGG | + | chr3.4:57388984-57389003 | None:intergenic | 30.0% | |
| ATTCTTCAGATGATCAAAGA+CGG | - | chr3.4:57388027-57388046 | MS.gene04400:CDS | 30.0% | |
| CAACTTGTAACACAAGAAAA+AGG | + | chr3.4:57390576-57390595 | None:intergenic | 30.0% | |
| CTAAATCGTCAAACAAAACT+TGG | + | chr3.4:57389279-57389298 | None:intergenic | 30.0% | |
| CTAATCCAAAACAAATGATG+TGG | + | chr3.4:57389053-57389072 | None:intergenic | 30.0% | |
| CTAGTAGAAAAGCTGAAATA+AGG | - | chr3.4:57389906-57389925 | MS.gene04400:intron | 30.0% | |
| GTAAATCCTCATAGAAAACT+TGG | + | chr3.4:57390209-57390228 | None:intergenic | 30.0% | |
| TATCTTGTGTTTATCCAAAC+AGG | + | chr3.4:57389739-57389758 | None:intergenic | 30.0% | |
| TCAAATAAGTGAATCCGAAT+AGG | - | chr3.4:57388967-57388986 | MS.gene04400:intron | 30.0% | |
| TGAAATAAGGCAATCTAAAC+TGG | - | chr3.4:57389919-57389938 | MS.gene04400:intron | 30.0% | |
| TTGAACTTATGAGCCTATAT+GGG | + | chr3.4:57388951-57388970 | None:intergenic | 30.0% | |
| TTTGAACTTATGAGCCTATA+TGG | + | chr3.4:57388952-57388971 | None:intergenic | 30.0% | |
| ! | TAGAAAGTTTTACATCTGGA+AGG | + | chr3.4:57390513-57390532 | None:intergenic | 30.0% |
| ! | TGTTATCCAAGTTTTCTATG+AGG | - | chr3.4:57390200-57390219 | MS.gene04400:intron | 30.0% |
| ! | TTAACTGTGTGACTTTGAAA+TGG | - | chr3.4:57390092-57390111 | MS.gene04400:intron | 30.0% |
| ! | TTTTTGTGAGGTGATCATTT+TGG | - | chr3.4:57390322-57390341 | MS.gene04400:intron | 30.0% |
| !! | AGATGTTTCTACACCTATTT+TGG | + | chr3.4:57391053-57391072 | None:intergenic | 30.0% |
| !! | GGAATGATTTTAGAGAGAAA+AGG | + | chr3.4:57390492-57390511 | None:intergenic | 30.0% |
| !! | TAACTGTGTGACTTTGAAAT+GGG | - | chr3.4:57390093-57390112 | MS.gene04400:intron | 30.0% |
| !! | TCGGGTTTACAATTTGTTTT+TGG | - | chr3.4:57391159-57391178 | MS.gene04400:CDS | 30.0% |
| !!! | CATGATGCTTTATTTTTGTG+AGG | - | chr3.4:57390310-57390329 | MS.gene04400:intron | 30.0% |
| AAAGGGAAAGACAGTTGAAT+TGG | - | chr3.4:57391126-57391145 | MS.gene04400:CDS | 35.0% | |
| AAGTCCTCCAAGATAACTTA+TGG | + | chr3.4:57389803-57389822 | None:intergenic | 35.0% | |
| AAGTTATCTTGGAGGACTTA+TGG | - | chr3.4:57389804-57389823 | MS.gene04400:intron | 35.0% | |
| AATGGTACCTACATAAACCA+TGG | + | chr3.4:57388739-57388758 | None:intergenic | 35.0% | |
| ACAAATTACAAATCCCCACA+TGG | - | chr3.4:57390890-57390909 | MS.gene04400:CDS | 35.0% | |
| ACATATTTCCATTAGCTCAC+CGG | + | chr3.4:57388877-57388896 | None:intergenic | 35.0% | |
| ACGCTAAGAGCAAATTAATC+AGG | + | chr3.4:57390170-57390189 | None:intergenic | 35.0% | |
| AGATGCTGTGATTAGATGAA+TGG | + | chr3.4:57391086-57391105 | None:intergenic | 35.0% | |
| AGCTAAACAAACCAACAAGT+TGG | + | chr3.4:57390545-57390564 | None:intergenic | 35.0% | |
| AGTGAGAATTAAGGAGGAAA+CGG | - | chr3.4:57388236-57388255 | MS.gene04400:CDS | 35.0% | |
| ATGGAGACGGTTTATGATTT+GGG | - | chr3.4:57388357-57388376 | MS.gene04400:CDS | 35.0% | |
| ATTGCAATTGATAAGGCTTC+AGG | - | chr3.4:57388432-57388451 | MS.gene04400:CDS | 35.0% | |
| ATTGGCTGTAATCTAACAAG+TGG | - | chr3.4:57389979-57389998 | MS.gene04400:intron | 35.0% | |
| CAAATTACAAATCCCCACAT+GGG | - | chr3.4:57390891-57390910 | MS.gene04400:CDS | 35.0% | |
| CAATACATGTTCAGTGAAAC+AGG | - | chr3.4:57391223-57391242 | MS.gene04400:CDS | 35.0% | |
| CTTGTAACACAAGAAAAAGG+AGG | + | chr3.4:57390573-57390592 | None:intergenic | 35.0% | |
| GAACATTGCAATACAACTCT+AGG | + | chr3.4:57389255-57389274 | None:intergenic | 35.0% | |
| GGATGAAATTCGCAAAATTC+TGG | - | chr3.4:57390970-57390989 | MS.gene04400:CDS | 35.0% | |
| GGATGTGATTGCAATTGATA+AGG | - | chr3.4:57388425-57388444 | MS.gene04400:CDS | 35.0% | |
| GTTTCCATAAGTTATCTTGG+AGG | - | chr3.4:57389796-57389815 | MS.gene04400:intron | 35.0% | |
| TATAGGAGTGAGAATTAAGG+AGG | - | chr3.4:57388230-57388249 | MS.gene04400:CDS | 35.0% | |
| TGTGTACCTCATCAATGAAA+AGG | + | chr3.4:57390766-57390785 | None:intergenic | 35.0% | |
| TTGCAATTGATAAGGCTTCA+GGG | - | chr3.4:57388433-57388452 | MS.gene04400:CDS | 35.0% | |
| TTGCATAAGTTCTCCCATAT+AGG | - | chr3.4:57388935-57388954 | MS.gene04400:intron | 35.0% | |
| TTGTGTTACAAGTTGCTTCT+TGG | - | chr3.4:57390581-57390600 | MS.gene04400:CDS | 35.0% | |
| ! | AAGCCTTAACACAAGCTTTT+CGG | - | chr3.4:57388202-57388221 | MS.gene04400:CDS | 35.0% |
| ! | AGAAGCCACATCATTTGTTT+TGG | - | chr3.4:57389045-57389064 | MS.gene04400:intron | 35.0% |
| ! | AGTGCTTTTCATTCCTCAAT+CGG | - | chr3.4:57390798-57390817 | MS.gene04400:CDS | 35.0% |
| ! | AGTTGTGTGACTTTAGAAAC+TGG | - | chr3.4:57389161-57389180 | MS.gene04400:intron | 35.0% |
| ! | TTGGTAGCCACAACTAAAAT+GGG | + | chr3.4:57390845-57390864 | None:intergenic | 35.0% |
| !! | GCTGTTTTCATAAGCTATAC+CGG | - | chr3.4:57388855-57388874 | MS.gene04400:intron | 35.0% |
| !!! | AATGTCTCCCATTTTAGTTG+TGG | - | chr3.4:57390835-57390854 | MS.gene04400:CDS | 35.0% |
| !!! | TTGATGGTTTTGAAGATTCC+TGG | - | chr3.4:57389219-57389238 | MS.gene04400:intron | 35.0% |
| AAGATCGACACAGTACTTGA+TGG | - | chr3.4:57391189-57391208 | MS.gene04400:CDS | 40.0% | |
| AATAGTTGTGATGCCTCTGT+TGG | + | chr3.4:57390864-57390883 | None:intergenic | 40.0% | |
| AGAGTGGAAAGAAGAAGGAA+AGG | - | chr3.4:57390721-57390740 | MS.gene04400:CDS | 40.0% | |
| AGGCGATCAAGTAGATCAAT+GGG | + | chr3.4:57390920-57390939 | None:intergenic | 40.0% | |
| AGTGCTTCCATGGTTTATGT+AGG | - | chr3.4:57388729-57388748 | MS.gene04400:intron | 40.0% | |
| ATCAAAGACGGTAAAATCGC+CGG | - | chr3.4:57388039-57388058 | MS.gene04400:CDS | 40.0% | |
| ATCATGCTGCTCAAGACTTA+GGG | + | chr3.4:57390296-57390315 | None:intergenic | 40.0% | |
| ATCCCAATCTCGACGAAAAA+GGG | + | chr3.4:57390358-57390377 | None:intergenic | 40.0% | |
| ATGGGAGAACTTATGCAAAC+AGG | + | chr3.4:57388933-57388952 | None:intergenic | 40.0% | |
| CGAATTTCATCCTCAGTGTA+AGG | + | chr3.4:57390962-57390981 | None:intergenic | 40.0% | |
| CGTGTTAATTTCAGAACGCA+GGG | - | chr3.4:57390623-57390642 | MS.gene04400:CDS | 40.0% | |
| CTTCCGAAAAGCTTGTGTTA+AGG | + | chr3.4:57388208-57388227 | None:intergenic | 40.0% | |
| GAATGAGTCAATGACAGCTT+TGG | - | chr3.4:57389484-57389503 | MS.gene04400:intron | 40.0% | |
| GATGGAGACGGTTTATGATT+TGG | - | chr3.4:57388356-57388375 | MS.gene04400:CDS | 40.0% | |
| GGAACAAATTGACACGAAAG+TGG | - | chr3.4:57390697-57390716 | MS.gene04400:CDS | 40.0% | |
| GGCTATAGGAGTGAGAATTA+AGG | - | chr3.4:57388227-57388246 | MS.gene04400:CDS | 40.0% | |
| GTTGAGTAGAGATGATGAGT+AGG | + | chr3.4:57390940-57390959 | None:intergenic | 40.0% | |
| TAGGCGATCAAGTAGATCAA+TGG | + | chr3.4:57390921-57390940 | None:intergenic | 40.0% | |
| TATCCCAATCTCGACGAAAA+AGG | + | chr3.4:57390359-57390378 | None:intergenic | 40.0% | |
| TCATCAATGAAAAGGACACC+AGG | + | chr3.4:57390758-57390777 | None:intergenic | 40.0% | |
| TCGTGTTAATTTCAGAACGC+AGG | - | chr3.4:57390622-57390641 | MS.gene04400:CDS | 40.0% | |
| TCTAATCACAGCATCTGCTT+TGG | - | chr3.4:57391090-57391109 | MS.gene04400:CDS | 40.0% | |
| TGAAATTCGTGCAGAAGTCA+GGG | - | chr3.4:57390676-57390695 | MS.gene04400:CDS | 40.0% | |
| TGATGTATGTAGGTCCTGTT+TGG | - | chr3.4:57389722-57389741 | MS.gene04400:intron | 40.0% | |
| TGGAGACGGTTTATGATTTG+GGG | - | chr3.4:57388358-57388377 | MS.gene04400:CDS | 40.0% | |
| TTATACAGACTTGCCAATGG+TGG | - | chr3.4:57389335-57389354 | MS.gene04400:intron | 40.0% | |
| TTGGCATGCCAAAAGAGAAA+GGG | - | chr3.4:57391109-57391128 | MS.gene04400:CDS | 40.0% | |
| TTTGGCATGCCAAAAGAGAA+AGG | - | chr3.4:57391108-57391127 | MS.gene04400:CDS | 40.0% | |
| ! | ACTCTAGGAGCAAATTAACC+AGG | + | chr3.4:57389240-57389259 | None:intergenic | 40.0% |
| ! | CTGTCTTTCCCTTTCTCTTT+TGG | + | chr3.4:57391120-57391139 | None:intergenic | 40.0% |
| ! | CTTAACACAAGCTTTTCGGA+AGG | - | chr3.4:57388206-57388225 | MS.gene04400:CDS | 40.0% |
| ! | GTGCTTTTCATTCCTCAATC+GGG | - | chr3.4:57390799-57390818 | MS.gene04400:CDS | 40.0% |
| ! | TGGTGTCCTTTTCATTGATG+AGG | - | chr3.4:57390757-57390776 | MS.gene04400:CDS | 40.0% |
| !! | GGTAAATGAAAGTGCTTCCA+TGG | - | chr3.4:57388719-57388738 | MS.gene04400:intron | 40.0% |
| !! | GTTGGTAGCCACAACTAAAA+TGG | + | chr3.4:57390846-57390865 | None:intergenic | 40.0% |
| !! | TCGAGGGATTTTGATGCTAT+GGG | - | chr3.4:57388489-57388508 | MS.gene04400:CDS | 40.0% |
| AACCGCTATTGCAATGGGAA+TGG | - | chr3.4:57388101-57388120 | MS.gene04400:CDS | 45.0% | |
| AAGCTATACCGGTGAGCTAA+TGG | - | chr3.4:57388866-57388885 | MS.gene04400:intron | 45.0% | |
| AAGCTCACTACCAGCAATCA+TGG | + | chr3.4:57388157-57388176 | None:intergenic | 45.0% | |
| AAGTTTGTGCAGTGTCCTGA+TGG | - | chr3.4:57388522-57388541 | MS.gene04400:intron | 45.0% | |
| AGATCAATGGGAATCCCATG+TGG | + | chr3.4:57390908-57390927 | None:intergenic | 45.0% | |
| AGTTCTCCCAAACTGTCTCA+CGG | - | chr3.4:57389874-57389893 | MS.gene04400:intron | 45.0% | |
| ATATACCACCATGCTACCCA+AGG | + | chr3.4:57389361-57389380 | None:intergenic | 45.0% | |
| ATCAATGGGAATCCCATGTG+GGG | + | chr3.4:57390906-57390925 | None:intergenic | 45.0% | |
| CAGGGAAGATTACGAAGCTT+GGG | - | chr3.4:57388451-57388470 | MS.gene04400:CDS | 45.0% | |
| CATCATGCTGCTCAAGACTT+AGG | + | chr3.4:57390297-57390316 | None:intergenic | 45.0% | |
| CGAAGATGATTGAGGCGATT+GGG | - | chr3.4:57388382-57388401 | MS.gene04400:CDS | 45.0% | |
| CGTTGCTTACAATCAGTGCA+TGG | - | chr3.4:57390231-57390250 | MS.gene04400:intron | 45.0% | |
| CTCTACTCAACCTTACACTG+AGG | - | chr3.4:57390949-57390968 | MS.gene04400:CDS | 45.0% | |
| CTTACAATCAGTGCATGGTG+GGG | - | chr3.4:57390236-57390255 | MS.gene04400:intron | 45.0% | |
| GAAGACGTAGACATGAGTGA+AGG | - | chr3.4:57391010-57391029 | MS.gene04400:CDS | 45.0% | |
| GAGAATTAAGGAGGAAACGG+AGG | - | chr3.4:57388239-57388258 | MS.gene04400:CDS | 45.0% | |
| GATCAATGGGAATCCCATGT+GGG | + | chr3.4:57390907-57390926 | None:intergenic | 45.0% | |
| GATCATCTGAAGAATGACGC+CGG | + | chr3.4:57388022-57388041 | None:intergenic | 45.0% | |
| GATTGAAGGTGAGGTTGTTG+AGG | - | chr3.4:57388263-57388282 | MS.gene04400:CDS | 45.0% | |
| GCTTACAATCAGTGCATGGT+GGG | - | chr3.4:57390235-57390254 | MS.gene04400:intron | 45.0% | |
| GGCAAAACCGCTATTGCAAT+GGG | - | chr3.4:57388096-57388115 | MS.gene04400:CDS | 45.0% | |
| GTGAAATTCGTGCAGAAGTC+AGG | - | chr3.4:57390675-57390694 | MS.gene04400:CDS | 45.0% | |
| TCAGGGAAGATTACGAAGCT+TGG | - | chr3.4:57388450-57388469 | MS.gene04400:CDS | 45.0% | |
| TCATGTCTACGTCTTCCTCT+TGG | + | chr3.4:57391006-57391025 | None:intergenic | 45.0% | |
| TCTGGATATCAGATGCCAAG+AGG | - | chr3.4:57390988-57391007 | MS.gene04400:CDS | 45.0% | |
| TGAAGACGACACCAATGCTA+TGG | - | chr3.4:57391255-57391274 | MS.gene04400:CDS | 45.0% | |
| TGAGGTTCAGATTGATCGTC+CGG | - | chr3.4:57388281-57388300 | MS.gene04400:CDS | 45.0% | |
| TGATGCATCCATTGTGTGCA+TGG | - | chr3.4:57389301-57389320 | MS.gene04400:intron | 45.0% | |
| TGCTTACAATCAGTGCATGG+TGG | - | chr3.4:57390234-57390253 | MS.gene04400:intron | 45.0% | |
| TGGCAAAACCGCTATTGCAA+TGG | - | chr3.4:57388095-57388114 | MS.gene04400:CDS | 45.0% | |
| TTAGTTGTGGCTACCAACAG+AGG | - | chr3.4:57390848-57390867 | MS.gene04400:CDS | 45.0% | |
| TTTCAGAACGCAGGGATTTC+TGG | - | chr3.4:57390631-57390650 | MS.gene04400:CDS | 45.0% | |
| ! | AGCTTGGGAGATCATTTTCG+CGG | - | chr3.4:57388466-57388485 | MS.gene04400:CDS | 45.0% |
| ! | CAAGCTTTTCGGAAGGCTAT+AGG | - | chr3.4:57388213-57388232 | MS.gene04400:CDS | 45.0% |
| ! | GGAGACGGTTTATGATTTGG+GGG | - | chr3.4:57388359-57388378 | MS.gene04400:CDS | 45.0% |
| !! | AGAGGCATCACAACTATTCG+AGG | - | chr3.4:57390866-57390885 | MS.gene04400:CDS | 45.0% |
| !! | CGAGGGATTTTGATGCTATG+GGG | - | chr3.4:57388490-57388509 | MS.gene04400:CDS | 45.0% |
| !! | GACCCTTTTTCGTCGAGATT+GGG | - | chr3.4:57390353-57390372 | MS.gene04400:intron | 45.0% |
| !! | GTCGAGGGATTTTGATGCTA+TGG | - | chr3.4:57388488-57388507 | MS.gene04400:CDS | 45.0% |
| !! | TGACCCTTTTTCGTCGAGAT+TGG | - | chr3.4:57390352-57390371 | MS.gene04400:intron | 45.0% |
| !!! | GGATTTCTGGCTCTTTTCAC+CGG | - | chr3.4:57390644-57390663 | MS.gene04400:CDS | 45.0% |
| !!! | AAAAAAAAAAAAAAACATTT+TGG | + | chr3.4:57389572-57389591 | None:intergenic | 5.0% |
| !!! | AAAAAAAAAAAAAACATTTT+GGG | + | chr3.4:57389571-57389590 | None:intergenic | 5.0% |
| AACGGAGGTGATTGAAGGTG+AGG | - | chr3.4:57388254-57388273 | MS.gene04400:CDS | 50.0% | |
| AAGCACCCGTGAGACAGTTT+GGG | + | chr3.4:57389883-57389902 | None:intergenic | 50.0% | |
| ACGAATTTCACCCGTGTCAC+CGG | + | chr3.4:57390666-57390685 | None:intergenic | 50.0% | |
| ACTCCTTTCGCCATGATTGC+TGG | - | chr3.4:57388144-57388163 | MS.gene04400:CDS | 50.0% | |
| ATGGGAATGGCGAAATCCCT+CGG | - | chr3.4:57388114-57388133 | MS.gene04400:CDS | 50.0% | |
| CACTGCACAAACTTCACCTG+AGG | + | chr3.4:57388516-57388535 | None:intergenic | 50.0% | |
| CATCCATTGTGTGCATGGTG+AGG | - | chr3.4:57389306-57389325 | MS.gene04400:intron | 50.0% | |
| CGCCATTCCCATTGCAATAG+CGG | + | chr3.4:57388106-57388125 | None:intergenic | 50.0% | |
| CTACCAGCAATCATGGCGAA+AGG | + | chr3.4:57388150-57388169 | None:intergenic | 50.0% | |
| CTACCTCACCATGCACACAA+TGG | + | chr3.4:57389312-57389331 | None:intergenic | 50.0% | |
| CTCAAGACTTAGGGCTGACT+TGG | + | chr3.4:57390287-57390306 | None:intergenic | 50.0% | |
| CTCTTCTGCAACTCACCATC+AGG | + | chr3.4:57388540-57388559 | None:intergenic | 50.0% | |
| GAAAGGAGTCTCAAGACCGA+GGG | + | chr3.4:57388133-57388152 | None:intergenic | 50.0% | |
| GAAGGAGAAGGTGACAAGTG+GGG | - | chr3.4:57388404-57388423 | MS.gene04400:CDS | 50.0% | |
| GAAGTCGACAGAGATGGAGA+CGG | - | chr3.4:57388344-57388363 | MS.gene04400:CDS | 50.0% | |
| GACGTTGAAGTCGACAGAGA+TGG | - | chr3.4:57388338-57388357 | MS.gene04400:CDS | 50.0% | |
| GAGGAAACGGAGGTGATTGA+AGG | - | chr3.4:57388249-57388268 | MS.gene04400:CDS | 50.0% | |
| GATGATTGAGGCGATTGGGA+AGG | - | chr3.4:57388386-57388405 | MS.gene04400:CDS | 50.0% | |
| GCGAAGATGATTGAGGCGAT+TGG | - | chr3.4:57388381-57388400 | MS.gene04400:CDS | 50.0% | |
| GGAAGGAGAAGGTGACAAGT+GGG | - | chr3.4:57388403-57388422 | MS.gene04400:CDS | 50.0% | |
| GTGGCAGAGTGGAAAGAAGA+AGG | - | chr3.4:57390716-57390735 | MS.gene04400:CDS | 50.0% | |
| GTTCTCCCAAACTGTCTCAC+GGG | - | chr3.4:57389875-57389894 | MS.gene04400:intron | 50.0% | |
| TAAGCACCCGTGAGACAGTT+TGG | + | chr3.4:57389884-57389903 | None:intergenic | 50.0% | |
| TCGACGAAAAAGGGTCAGTG+AGG | + | chr3.4:57390349-57390368 | None:intergenic | 50.0% | |
| TGACCCATTGTTGCCGAGAT+CGG | - | chr3.4:57389411-57389430 | MS.gene04400:intron | 50.0% | |
| TGAGTTGCAGAAGAGGAAGG+AGG | - | chr3.4:57388545-57388564 | MS.gene04400:intron | 50.0% | |
| TGGTGAGTTGCAGAAGAGGA+AGG | - | chr3.4:57388542-57388561 | MS.gene04400:intron | 50.0% | |
| TTCATTCCTCAATCGGGCTC+TGG | - | chr3.4:57390805-57390824 | MS.gene04400:CDS | 50.0% | |
| TTGACACGAAAGTGGCAGAG+TGG | - | chr3.4:57390705-57390724 | MS.gene04400:CDS | 50.0% | |
| TTTGGGGGCGAAGATGATTG+AGG | - | chr3.4:57388374-57388393 | MS.gene04400:CDS | 50.0% | |
| ! | ATAGCGGTTTTGCCAGTACC+TGG | + | chr3.4:57388090-57388109 | None:intergenic | 50.0% |
| ! | CTGATGGTGAGTTGCAGAAG+AGG | - | chr3.4:57388538-57388557 | MS.gene04400:intron | 50.0% |
| ! | GAGATCATTTTCGCGGTCGA+GGG | - | chr3.4:57388473-57388492 | MS.gene04400:CDS | 50.0% |
| ! | TTTTGATGCTATGGGGCCTC+AGG | - | chr3.4:57388497-57388516 | MS.gene04400:intron | 50.0% |
| !! | TGGTAGTGAGCTTTTCTCGC+TGG | - | chr3.4:57388164-57388183 | MS.gene04400:CDS | 50.0% |
| AAGTGGCCACATCATGCTGC+TGG | - | chr3.4:57389996-57390015 | MS.gene04400:intron | 55.0% | |
| AGACTTGCCAATGGTGGCCT+TGG | - | chr3.4:57389341-57389360 | MS.gene04400:intron | 55.0% | |
| AGCTAGAAGAACAGCGCGTC+CGG | + | chr3.4:57388061-57388080 | None:intergenic | 55.0% | |
| AGTGGCCACATCATGCTGCT+GGG | - | chr3.4:57389997-57390016 | MS.gene04400:intron | 55.0% | |
| ATGCTACCCAAGGCCACCAT+TGG | + | chr3.4:57389351-57389370 | None:intergenic | 55.0% | |
| CATCTGAAGAATGACGCCGG+CGG | + | chr3.4:57388019-57388038 | None:intergenic | 55.0% | |
| CATTCTCCAGAGCCCGATTG+AGG | + | chr3.4:57390814-57390833 | None:intergenic | 55.0% | |
| CGAAAGGAGTCTCAAGACCG+AGG | + | chr3.4:57388134-57388153 | None:intergenic | 55.0% | |
| CTAAGGAAGAGTCGAGACCC+AGG | + | chr3.4:57387945-57387964 | None:intergenic | 55.0% | |
| CTCCCGATCTCGGCAACAAT+GGG | + | chr3.4:57389417-57389436 | None:intergenic | 55.0% | |
| GACCCATTGTTGCCGAGATC+GGG | - | chr3.4:57389412-57389431 | MS.gene04400:intron | 55.0% | |
| GACTTGCCAATGGTGGCCTT+GGG | - | chr3.4:57389342-57389361 | MS.gene04400:intron | 55.0% | |
| GGAAAGGCAGAGATTGTGCC+TGG | - | chr3.4:57390737-57390756 | MS.gene04400:CDS | 55.0% | |
| GGGAAGGAGAAGGTGACAAG+TGG | - | chr3.4:57388402-57388421 | MS.gene04400:CDS | 55.0% | |
| GGTTCAGATTGATCGTCCGG+CGG | - | chr3.4:57388284-57388303 | MS.gene04400:CDS | 55.0% | |
| GTTGCAGAAGAGGAAGGAGG+TGG | - | chr3.4:57388548-57388567 | MS.gene04400:intron | 55.0% | |
| TCGGCAACAATGGGTCAGCA+AGG | + | chr3.4:57389408-57389427 | None:intergenic | 55.0% | |
| TCTCCCGATCTCGGCAACAA+TGG | + | chr3.4:57389418-57389437 | None:intergenic | 55.0% | |
| TGAGGCGATTGGGAAGGAGA+AGG | - | chr3.4:57388392-57388411 | MS.gene04400:CDS | 55.0% | |
| TGTGTCCCAGCAGCATGATG+TGG | + | chr3.4:57390005-57390024 | None:intergenic | 55.0% | |
| ! | AATGGTGGCCTTGGGTAGCA+TGG | - | chr3.4:57389350-57389369 | MS.gene04400:intron | 55.0% |
| ! | GCTCTTTTCACCGGTGACAC+GGG | - | chr3.4:57390653-57390672 | MS.gene04400:CDS | 55.0% |
| ! | GGAGATCATTTTCGCGGTCG+AGG | - | chr3.4:57388472-57388491 | MS.gene04400:CDS | 55.0% |
| ! | GGCTCTTTTCACCGGTGACA+CGG | - | chr3.4:57390652-57390671 | MS.gene04400:CDS | 55.0% |
| ! | GTTCTTCTAGCTGGTCAGCC+AGG | - | chr3.4:57388069-57388088 | MS.gene04400:CDS | 55.0% |
| AAGAGTCGAGACCCAGGCCA+CGG | + | chr3.4:57387939-57387958 | None:intergenic | 60.0% | |
| ACACTCTCACATCCGTGGCC+TGG | - | chr3.4:57387924-57387943 | MS.gene04400:CDS | 60.0% | |
| CACTCTCACATCCGTGGCCT+GGG | - | chr3.4:57387925-57387944 | MS.gene04400:CDS | 60.0% | |
| CTAACGCGCATAGAGCGCGT+GGG | - | chr3.4:57387898-57387917 | MS.gene04400:CDS | 60.0% | |
| CTAGCTGGTCAGCCAGGTAC+TGG | - | chr3.4:57388075-57388094 | MS.gene04400:CDS | 60.0% | |
| CTCTATGCGCGTTAGGTCGC+GGG | + | chr3.4:57387893-57387912 | None:intergenic | 60.0% | |
| GACTTGGCCGACCATGCCTT+CGG | + | chr3.4:57387983-57388002 | None:intergenic | 60.0% | |
| GCACTCGCTTCTCCCGATCT+CGG | + | chr3.4:57389427-57389446 | None:intergenic | 60.0% | |
| GCTCTATGCGCGTTAGGTCG+CGG | + | chr3.4:57387894-57387913 | None:intergenic | 60.0% | |
| GGACGCGCTGTTCTTCTAGC+TGG | - | chr3.4:57388060-57388079 | MS.gene04400:CDS | 60.0% | |
| GGAGCACACTCTCACATCCG+TGG | - | chr3.4:57387919-57387938 | MS.gene04400:CDS | 60.0% | |
| TCAGATTGATCGTCCGGCGG+TGG | - | chr3.4:57388287-57388306 | MS.gene04400:CDS | 60.0% | |
| ATTGATCGTCCGGCGGTGGC+TGG | - | chr3.4:57388291-57388310 | MS.gene04400:CDS | 65.0% | |
| CCACGCGCTCTATGCGCGTT+AGG | + | chr3.4:57387900-57387919 | None:intergenic | 65.0% | |
| CCTAACGCGCATAGAGCGCG+TGG | - | chr3.4:57387897-57387916 | MS.gene04400:CDS | 65.0% | |
| CGGCTTTGCGAGCGGAGACT+TGG | + | chr3.4:57387999-57388018 | None:intergenic | 65.0% | |
| GCCGACCATGCCTTCGGAGA+CGG | + | chr3.4:57387977-57387996 | None:intergenic | 65.0% | |
| ! | GCCGTCTCCGAAGGCATGGT+CGG | - | chr3.4:57387973-57387992 | MS.gene04400:CDS | 65.0% |
| ! | GGTGGCCTTGGGTAGCATGG+TGG | - | chr3.4:57389353-57389372 | MS.gene04400:intron | 65.0% |
| ACGCGCCGTCTCCGAAGGCA+TGG | - | chr3.4:57387969-57387988 | MS.gene04400:CDS | 70.0% | |
| ATGCCTTCGGAGACGGCGCG+TGG | + | chr3.4:57387970-57387989 | None:intergenic | 70.0% | |
| CTGGAGCTGCGGCGAAGACG+GGG | - | chr3.4:57388310-57388329 | MS.gene04400:CDS | 70.0% | |
| GCTGGAGCTGCGGCGAAGAC+GGG | - | chr3.4:57388309-57388328 | MS.gene04400:CDS | 70.0% | |
| GGCTGGAGCTGCGGCGAAGA+CGG | - | chr3.4:57388308-57388327 | MS.gene04400:CDS | 70.0% | |
| GTCTCCGCTCGCAAAGCCGC+CGG | - | chr3.4:57388000-57388019 | MS.gene04400:CDS | 70.0% | |
| ! | GGAGACGGCGCGTGGCTCTA+AGG | + | chr3.4:57387962-57387981 | None:intergenic | 70.0% |
| GACGCCGGCGGCTTTGCGAG+CGG | + | chr3.4:57388007-57388026 | None:intergenic | 75.0% | |
| GAGCCACGCGCCGTCTCCGA+AGG | - | chr3.4:57387964-57387983 | MS.gene04400:CDS | 75.0% | |
| TCCGGCGGTGGCTGGAGCTG+CGG | - | chr3.4:57388299-57388318 | MS.gene04400:CDS | 75.0% | |
| ! | GCCGCAGCTCCAGCCACCGC+CGG | + | chr3.4:57388303-57388322 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 57387865 | 57391285 | 57387865 | ID=MS.gene04400 |
| chr3.4 | mRNA | 57387865 | 57391285 | 57387865 | ID=MS.gene04400.t1;Parent=MS.gene04400 |
| chr3.4 | exon | 57390537 | 57391285 | 57390537 | ID=MS.gene04400.t1.exon1;Parent=MS.gene04400.t1 |
| chr3.4 | CDS | 57390537 | 57391285 | 57390537 | ID=cds.MS.gene04400.t1;Parent=MS.gene04400.t1 |
| chr3.4 | exon | 57387865 | 57388513 | 57387865 | ID=MS.gene04400.t1.exon2;Parent=MS.gene04400.t1 |
| chr3.4 | CDS | 57387865 | 57388513 | 57387865 | ID=cds.MS.gene04400.t1;Parent=MS.gene04400.t1 |
| Gene Sequence |
| Protein sequence |
