Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014019.t1 | XP_003625033.1 | 96 | 248 | 6 | 2 | 1 | 244 | 1 | 248 | 2.00E-123 | 451.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014019.t1 | Q9M1J2 | 56.6 | 226 | 94 | 1 | 19 | 244 | 1 | 222 | 2.4e-69 | 263.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014019.t1 | A2Q2Z5 | 96.0 | 248 | 6 | 2 | 1 | 244 | 1 | 248 | 1.4e-123 | 451.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014019 | MS.gene20260 | PPI |
| MS.gene014019 | MS.gene38787 | PPI |
| MS.gene014019 | MS.gene09560 | PPI |
| MS.gene014019 | MS.gene046919 | PPI |
| MS.gene014019 | MS.gene20258 | PPI |
| MS.gene014019 | MS.gene57186 | PPI |
| MS.gene014019 | MS.gene017777 | PPI |
| MS.gene015218 | MS.gene014019 | PPI |
| MS.gene014019 | MS.gene39138 | PPI |
| MS.gene92338 | MS.gene014019 | PPI |
| MS.gene014019 | MS.gene015219 | PPI |
| MS.gene20260 | MS.gene014019 | PPI |
| MS.gene57185 | MS.gene014019 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014019.t1 | MTR_7g090220 | 95.968 | 248 | 6 | 2 | 1 | 244 | 1 | 248 | 1.24e-175 | 483 |
| MS.gene014019.t1 | MTR_6g042230 | 39.698 | 199 | 118 | 2 | 46 | 243 | 7 | 204 | 1.84e-43 | 146 |
| MS.gene014019.t1 | MTR_5g005470 | 40.500 | 200 | 116 | 2 | 46 | 243 | 7 | 205 | 1.77e-42 | 143 |
| MS.gene014019.t1 | MTR_6g088020 | 39.086 | 197 | 115 | 2 | 49 | 241 | 10 | 205 | 3.43e-41 | 140 |
| MS.gene014019.t1 | MTR_6g088010 | 39.267 | 191 | 111 | 2 | 55 | 241 | 16 | 205 | 2.21e-40 | 138 |
| MS.gene014019.t1 | MTR_5g016200 | 38.462 | 195 | 118 | 2 | 46 | 240 | 7 | 199 | 6.45e-40 | 137 |
| MS.gene014019.t1 | MTR_5g016220 | 37.500 | 200 | 122 | 2 | 46 | 243 | 132 | 330 | 2.05e-39 | 139 |
| MS.gene014019.t1 | MTR_3g058520 | 35.211 | 213 | 79 | 7 | 22 | 233 | 5 | 159 | 1.73e-29 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014019.t1 | AT3G57080 | 56.637 | 226 | 94 | 1 | 19 | 244 | 1 | 222 | 3.55e-96 | 281 |
| MS.gene014019.t1 | AT2G41340 | 60.294 | 204 | 81 | 0 | 40 | 243 | 14 | 217 | 1.99e-92 | 271 |
| MS.gene014019.t1 | AT2G41340 | 57.988 | 169 | 71 | 0 | 40 | 208 | 14 | 182 | 3.81e-71 | 216 |
| MS.gene014019.t1 | AT2G41340 | 59.756 | 164 | 66 | 0 | 40 | 203 | 14 | 177 | 6.03e-71 | 215 |
| MS.gene014019.t1 | AT3G54490 | 44.019 | 209 | 117 | 0 | 35 | 243 | 24 | 232 | 8.38e-62 | 194 |
| MS.gene014019.t1 | AT3G22320 | 37.500 | 200 | 122 | 2 | 46 | 243 | 6 | 204 | 3.02e-37 | 130 |
| MS.gene014019.t1 | AT5G57980 | 36.538 | 208 | 125 | 4 | 40 | 241 | 1 | 207 | 2.86e-32 | 117 |
Find 49 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGAGATTGGCCATGAATT+TGG | 0.226350 | 7.2:-18552631 | None:intergenic |
| CTTGTATATCATACTTCTTC+AGG | 0.242396 | 7.2:-18555546 | None:intergenic |
| GATGCAATTGCTCGATATTA+TGG | 0.243591 | 7.2:+18556197 | MS.gene014019:CDS |
| AGAGATATGGCGACTGAAAA+TGG | 0.293092 | 7.2:+18552383 | None:intergenic |
| TGCATCTGTTTGTAGCATTC+GGG | 0.306371 | 7.2:-18556180 | None:intergenic |
| CATCGTTGTTATTGCTGTTT+CGG | 0.317384 | 7.2:-18552423 | None:intergenic |
| GATGATTTCCGCCAAATTCA+TGG | 0.323871 | 7.2:+18552620 | MS.gene014019:CDS |
| TTGCATCTGTTTGTAGCATT+CGG | 0.338079 | 7.2:-18556181 | None:intergenic |
| ATCGATAGGTAACATGCATC+TGG | 0.368224 | 7.2:-18556268 | None:intergenic |
| TCAGTCAACACCTGATGCTT+TGG | 0.372400 | 7.2:-18555505 | None:intergenic |
| TGTTAATCTTCTCTCTTTCA+AGG | 0.372770 | 7.2:+18552952 | MS.gene014019:CDS |
| ATCAAAGAGAGAGACCCTTT+TGG | 0.387197 | 7.2:-18552699 | None:intergenic |
| CTCGATATTATGGACTTAAG+AGG | 0.410284 | 7.2:+18556207 | MS.gene014019:CDS |
| TTGTTCACCAAGATGGATAA+TGG | 0.412324 | 7.2:+18552494 | MS.gene014019:CDS |
| TATGCTTCCATTATCCATCT+TGG | 0.423538 | 7.2:-18552501 | None:intergenic |
| ATGCCACTAACCCCTCCAAA+AGG | 0.454191 | 7.2:+18552684 | MS.gene014019:CDS |
| TGTATTGAAGCCAAAGCATC+AGG | 0.467598 | 7.2:+18555495 | MS.gene014019:CDS |
| GACGATCAACATCAGGAGAT+TGG | 0.475030 | 7.2:-18552643 | None:intergenic |
| TAAGTGTTTGTTCACCAAGA+TGG | 0.482415 | 7.2:+18552487 | MS.gene014019:CDS |
| CCAGGGATAGTGAAAGTGAA+TGG | 0.482754 | 7.2:+18552833 | MS.gene014019:CDS |
| CAGGGATAGTGAAAGTGAAT+GGG | 0.483393 | 7.2:+18552834 | MS.gene014019:CDS |
| CCATTCACTTTCACTATCCC+TGG | 0.484269 | 7.2:-18552833 | None:intergenic |
| ACAACGATGGAGATCGAAAA+CGG | 0.484630 | 7.2:+18552437 | MS.gene014019:CDS |
| GTGAACAGAGAGAGTTTGAC+TGG | 0.517766 | 7.2:+18552881 | MS.gene014019:CDS |
| ACTGAAAATGGAGGACAAAA+CGG | 0.521986 | 7.2:+18552395 | MS.gene014019:CDS |
| CGTTGTTATTGCTGTTTCGG+TGG | 0.535026 | 7.2:-18552420 | None:intergenic |
| TGGCATGAGTAGCAGTAAAA+CGG | 0.535822 | 7.2:-18552667 | None:intergenic |
| TCGATATTATGGACTTAAGA+GGG | 0.537962 | 7.2:+18556208 | MS.gene014019:CDS |
| GAGATTGGCCATGAATTTGG+CGG | 0.538467 | 7.2:-18552628 | None:intergenic |
| GAGAGCTGGATTTCATCAGA+AGG | 0.539635 | 7.2:-18552593 | None:intergenic |
| AAACGGAGACGATCAACATC+AGG | 0.547032 | 7.2:-18552650 | None:intergenic |
| GTATGATATACAAGAAAAGC+AGG | 0.547642 | 7.2:+18555555 | MS.gene014019:CDS |
| ATGTTACCTATCGATGCGTT+TGG | 0.556524 | 7.2:+18556276 | MS.gene014019:CDS |
| TGCCACTAACCCCTCCAAAA+GGG | 0.558127 | 7.2:+18552685 | MS.gene014019:CDS |
| ATATCACCAAACGCATCGAT+AGG | 0.584034 | 7.2:-18556282 | None:intergenic |
| TCGATAGGTAACATGCATCT+GGG | 0.601581 | 7.2:-18556267 | None:intergenic |
| GGAAATCATCAAGAGAGAGC+TGG | 0.605433 | 7.2:-18552607 | None:intergenic |
| GTAGTTAAAGTTACCTACAC+TGG | 0.611436 | 7.2:+18556236 | MS.gene014019:CDS |
| ATCTTGGTGAACAAACACTT+AGG | 0.617123 | 7.2:-18552485 | None:intergenic |
| CTGGGTGATTTCACCAGTGT+AGG | 0.617622 | 7.2:-18556249 | None:intergenic |
| AGAGCTGGATTTCATCAGAA+GGG | 0.630001 | 7.2:-18552592 | None:intergenic |
| CGAAACAGCAATAACAACGA+TGG | 0.637396 | 7.2:+18552424 | MS.gene014019:CDS |
| AATGGGGTAAGAGACATAGC+AGG | 0.645159 | 7.2:+18552851 | MS.gene014019:CDS |
| GCATCTGTTTGTAGCATTCG+GGG | 0.645626 | 7.2:-18556179 | None:intergenic |
| CGATATTATGGACTTAAGAG+GGG | 0.658179 | 7.2:+18556209 | MS.gene014019:CDS |
| GATATTATGGACTTAAGAGG+GGG | 0.662903 | 7.2:+18556210 | MS.gene014019:CDS |
| CTTGAGATGCTCAAAGACAG+AGG | 0.664708 | 7.2:+18552560 | MS.gene014019:CDS |
| AGGGATAGTGAAAGTGAATG+GGG | 0.668631 | 7.2:+18552835 | MS.gene014019:CDS |
| GATATGGCGACTGAAAATGG+AGG | 0.750626 | 7.2:+18552386 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTAATATAGAAATAAAT+AGG | + | chr7.2:18554184-18554203 | MS.gene014019:intron | 10.0% |
| !!! | TATTTTTTTATATGAAAACT+AGG | + | chr7.2:18552738-18552757 | MS.gene014019:intron | 10.0% |
| !! | AAACATTGAAAAAAGTTATT+TGG | - | chr7.2:18555908-18555927 | None:intergenic | 15.0% |
| !! | AGAAATAAATAGGTTTAAAT+AGG | + | chr7.2:18554194-18554213 | MS.gene014019:intron | 15.0% |
| !! | AGATATCTAAATATTAATGT+AGG | - | chr7.2:18555336-18555355 | None:intergenic | 15.0% |
| !! | TTATAGGTTTCTTAATATTA+GGG | - | chr7.2:18553532-18553551 | None:intergenic | 15.0% |
| !! | TTTATAGGTTTCTTAATATT+AGG | - | chr7.2:18553533-18553552 | None:intergenic | 15.0% |
| !!! | TATACTTTTTTCTAATGTAA+TGG | - | chr7.2:18554000-18554019 | None:intergenic | 15.0% |
| !! | AAAAAACATTGAGTTAAAAG+AGG | - | chr7.2:18553018-18553037 | None:intergenic | 20.0% |
| !! | AAATCATGTTGAATTATCAA+TGG | - | chr7.2:18555773-18555792 | None:intergenic | 20.0% |
| !! | AACAAGACTTAATATAAGAA+TGG | - | chr7.2:18556148-18556167 | None:intergenic | 20.0% |
| !! | AACGAATATGTAGAAAATAT+AGG | + | chr7.2:18554139-18554158 | MS.gene014019:intron | 20.0% |
| !! | ATAACTAAGAAAATAAGATG+TGG | - | chr7.2:18554850-18554869 | None:intergenic | 20.0% |
| !! | CTTAATATTAGGGTTTAATT+TGG | - | chr7.2:18553522-18553541 | None:intergenic | 20.0% |
| !! | TAATATAAGAATGGTAGTAT+TGG | - | chr7.2:18556139-18556158 | None:intergenic | 20.0% |
| !! | TATATGAATTTATCTTCCTA+GGG | - | chr7.2:18554467-18554486 | None:intergenic | 20.0% |
| !! | TATGTATCTTTGACATTTAT+AGG | - | chr7.2:18553548-18553567 | None:intergenic | 20.0% |
| !! | TTTCCAACTTCAAAAAAAAT+AGG | - | chr7.2:18553429-18553448 | None:intergenic | 20.0% |
| !!! | AAAAGTTGAATTAGTTTGTT+AGG | + | chr7.2:18553364-18553383 | MS.gene014019:intron | 20.0% |
| !!! | AGAGTATTTGGATATTAATT+TGG | - | chr7.2:18554237-18554256 | None:intergenic | 20.0% |
| !!! | ATGAGTTATTAAGTTTTCTA+AGG | + | chr7.2:18555675-18555694 | MS.gene014019:intron | 20.0% |
| !!! | ATTCTCTTTTTATGCATATA+AGG | + | chr7.2:18556041-18556060 | MS.gene014019:intron | 20.0% |
| !!! | ATTGATAATTCAACATGATT+TGG | + | chr7.2:18555772-18555791 | MS.gene014019:intron | 20.0% |
| !!! | CAATGTTTGAGTTAAATTTT+GGG | + | chr7.2:18555920-18555939 | MS.gene014019:intron | 20.0% |
| !!! | GTTTAAAGAAGTATTATGAT+TGG | - | chr7.2:18553339-18553358 | None:intergenic | 20.0% |
| !!! | TATTTTTGTGTTAATGTCAA+TGG | - | chr7.2:18553585-18553604 | None:intergenic | 20.0% |
| !!! | TCAATGTTTGAGTTAAATTT+TGG | + | chr7.2:18555919-18555938 | MS.gene014019:intron | 20.0% |
| !!! | TTACCTATTTTTTTTGAAGT+TGG | + | chr7.2:18553423-18553442 | MS.gene014019:intron | 20.0% |
| !!! | TTTGTTTTTCTGTTAGAAAA+TGG | + | chr7.2:18553247-18553266 | MS.gene014019:intron | 20.0% |
| ! | AATAACAGCTTAGAGATATT+TGG | + | chr7.2:18553937-18553956 | MS.gene014019:intron | 25.0% |
| ! | ACAAACAAAATATTTCGTTC+AGG | - | chr7.2:18555616-18555635 | None:intergenic | 25.0% |
| ! | ACCTTAAACAAACAATCTTA+AGG | - | chr7.2:18555718-18555737 | None:intergenic | 25.0% |
| ! | ATCAAATTATCAAGTGAGTA+GGG | - | chr7.2:18555310-18555329 | None:intergenic | 25.0% |
| ! | ATTCAACATTAAAGAATGAC+TGG | - | chr7.2:18555097-18555116 | None:intergenic | 25.0% |
| ! | CTATATGAATTTATCTTCCT+AGG | - | chr7.2:18554468-18554487 | None:intergenic | 25.0% |
| ! | CTTACATGCAAATTTCAATA+AGG | + | chr7.2:18555145-18555164 | MS.gene014019:intron | 25.0% |
| ! | TATCAAATTATCAAGTGAGT+AGG | - | chr7.2:18555311-18555330 | None:intergenic | 25.0% |
| ! | TCATTCTTTAATGTTGAATC+TGG | + | chr7.2:18555098-18555117 | MS.gene014019:intron | 25.0% |
| ! | TCCTTAAGATTGTTTGTTTA+AGG | + | chr7.2:18555714-18555733 | MS.gene014019:intron | 25.0% |
| ! | TTATATGAAAACTAGGTATC+TGG | + | chr7.2:18552745-18552764 | MS.gene014019:intron | 25.0% |
| !! | AGATTTACTTGAGATTTTCT+AGG | - | chr7.2:18554410-18554429 | None:intergenic | 25.0% |
| !! | TACGCATAATTTAAGTTATC+TGG | - | chr7.2:18554970-18554989 | None:intergenic | 25.0% |
| !! | TCTTAGTCAACTGTTATTTA+TGG | + | chr7.2:18555744-18555763 | MS.gene014019:intron | 25.0% |
| !! | TTGAAGAATGTTTGGAATTA+AGG | + | chr7.2:18553452-18553471 | MS.gene014019:intron | 25.0% |
| !! | TTTCAAGGTTGAAATTTTTC+AGG | + | chr7.2:18552967-18552986 | MS.gene014019:CDS | 25.0% |
| !!! | AAGCACCATTTTTTAAAATG+AGG | - | chr7.2:18555028-18555047 | None:intergenic | 25.0% |
| !!! | ATGGTCTTATAATTTTGACT+TGG | - | chr7.2:18555956-18555975 | None:intergenic | 25.0% |
| !!! | GAGAACCTCATTTTAAAAAA+TGG | + | chr7.2:18555020-18555039 | MS.gene014019:intron | 25.0% |
| AAATCAAAGCAGATGAATGT+GGG | - | chr7.2:18554709-18554728 | None:intergenic | 30.0% | |
| AACTACATAACAAAGCAAAG+CGG | + | chr7.2:18553617-18553636 | MS.gene014019:intron | 30.0% | |
| AAGTGCAGGTATTTATTTGA+AGG | + | chr7.2:18554105-18554124 | MS.gene014019:intron | 30.0% | |
| CAGTTTCGATAAAAAGAGAT+AGG | - | chr7.2:18554360-18554379 | None:intergenic | 30.0% | |
| CTCTTTAGTAATTGGTTAGT+AGG | + | chr7.2:18553966-18553985 | MS.gene014019:intron | 30.0% | |
| CTTGTATATCATACTTCTTC+AGG | - | chr7.2:18555549-18555568 | None:intergenic | 30.0% | |
| GGATAGTTCTCTTTAGTAAT+TGG | + | chr7.2:18553958-18553977 | MS.gene014019:intron | 30.0% | |
| GGATTTAAATACAACAGACA+TGG | - | chr7.2:18554303-18554322 | None:intergenic | 30.0% | |
| GTATGATATACAAGAAAAGC+AGG | + | chr7.2:18555555-18555574 | MS.gene014019:CDS | 30.0% | |
| GTTGTATCACTAATCAATGT+GGG | - | chr7.2:18555886-18555905 | None:intergenic | 30.0% | |
| TCGATATTATGGACTTAAGA+GGG | + | chr7.2:18556208-18556227 | MS.gene014019:CDS | 30.0% | |
| TGTTAATCTTCTCTCTTTCA+AGG | + | chr7.2:18552952-18552971 | MS.gene014019:CDS | 30.0% | |
| TGTTTCAGATTACCTTAAAC+AGG | - | chr7.2:18554076-18554095 | None:intergenic | 30.0% | |
| TTAAAATCGAGATCCTAGAT+AGG | - | chr7.2:18554937-18554956 | None:intergenic | 30.0% | |
| TTATTCAAACATTCCAAGCA+TGG | - | chr7.2:18553922-18553941 | None:intergenic | 30.0% | |
| TTGGCATGTAAGAACAAAAA+TGG | + | chr7.2:18553394-18553413 | MS.gene014019:intron | 30.0% | |
| ! | AGTTTGAGATGTTTACAAGT+TGG | + | chr7.2:18555177-18555196 | MS.gene014019:intron | 30.0% |
| ! | ATAAGAATGGTAGTATTGGA+AGG | - | chr7.2:18556135-18556154 | None:intergenic | 30.0% |
| ! | CATGATTTGGATATCTGAAA+TGG | + | chr7.2:18555785-18555804 | MS.gene014019:intron | 30.0% |
| ! | GAAAATGGTAAACATGCTTT+TGG | + | chr7.2:18553262-18553281 | MS.gene014019:intron | 30.0% |
| ! | GGTTAATCAAACAGAGTATT+TGG | - | chr7.2:18554249-18554268 | None:intergenic | 30.0% |
| ! | GTTTGAGATGTTTACAAGTT+GGG | + | chr7.2:18555178-18555197 | MS.gene014019:intron | 30.0% |
| ! | TACATGACTTTTCTCTTACA+AGG | - | chr7.2:18554048-18554067 | None:intergenic | 30.0% |
| ! | TCAGCAACTTGGATTTTATA+AGG | - | chr7.2:18554324-18554343 | None:intergenic | 30.0% |
| !! | AGTTCAAGTTGATGCAAAAT+TGG | + | chr7.2:18554565-18554584 | MS.gene014019:intron | 30.0% |
| !! | GGAAACTTTTGAAGAATGTT+TGG | + | chr7.2:18553444-18553463 | MS.gene014019:intron | 30.0% |
| !! | TAATGAGTGTTTGAGTTGTT+GGG | + | chr7.2:18552781-18552800 | MS.gene014019:intron | 30.0% |
| !!! | AGATTTTGGTGGTTTTTAGT+GGG | + | chr7.2:18552810-18552829 | MS.gene014019:intron | 30.0% |
| !!! | ATTGGTTTTTTGCAGTGAAT+TGG | + | chr7.2:18554583-18554602 | MS.gene014019:intron | 30.0% |
| !!! | TAGTTTGTTAGGCATTGTTT+TGG | + | chr7.2:18553375-18553394 | MS.gene014019:intron | 30.0% |
| !!! | TGTTTTGCTGTTTATACTCT+GGG | + | chr7.2:18555633-18555652 | MS.gene014019:intron | 30.0% |
| !!! | TTGTTTTGCTGTTTATACTC+TGG | + | chr7.2:18555632-18555651 | MS.gene014019:intron | 30.0% |
| AAACAGACATGATAAAGTGC+AGG | + | chr7.2:18554091-18554110 | MS.gene014019:intron | 35.0% | |
| AAGAATGACTGGTGTATTCA+AGG | - | chr7.2:18555086-18555105 | None:intergenic | 35.0% | |
| ACAAAACCTCAACTTGGTAA+GGG | + | chr7.2:18553679-18553698 | MS.gene014019:intron | 35.0% | |
| ACTGAAAATGGAGGACAAAA+CGG | + | chr7.2:18552395-18552414 | MS.gene014019:CDS | 35.0% | |
| AGAAAAATTGAGTTCAGTGG+TGG | + | chr7.2:18553753-18553772 | MS.gene014019:intron | 35.0% | |
| AGAGTCAACAAGTTTCTTGT+TGG | - | chr7.2:18555375-18555394 | None:intergenic | 35.0% | |
| AGTCAACAAGTTTCTTGTTG+GGG | - | chr7.2:18555373-18555392 | None:intergenic | 35.0% | |
| ATCTTCCTAGGGATATATCA+AGG | - | chr7.2:18554456-18554475 | None:intergenic | 35.0% | |
| ATCTTGGTGAACAAACACTT+AGG | - | chr7.2:18552488-18552507 | None:intergenic | 35.0% | |
| CAACTCAAACACTCATTAGT+CGG | - | chr7.2:18552779-18552798 | None:intergenic | 35.0% | |
| CAGTAGTTGCAAAACTGAAA+TGG | - | chr7.2:18555975-18555994 | None:intergenic | 35.0% | |
| CATCAACTTGAACTTGCAAA+TGG | - | chr7.2:18554559-18554578 | None:intergenic | 35.0% | |
| CCTAAACTCAAGTTTACACT+AGG | - | chr7.2:18553877-18553896 | None:intergenic | 35.0% | |
| CCTAGTGTAAACTTGAGTTT+AGG | + | chr7.2:18553874-18553893 | MS.gene014019:intron | 35.0% | |
| CGATATTATGGACTTAAGAG+GGG | + | chr7.2:18556209-18556228 | MS.gene014019:CDS | 35.0% | |
| CTCAAGTAAATCTGAAGAGT+GGG | + | chr7.2:18554417-18554436 | MS.gene014019:intron | 35.0% | |
| CTCGATATTATGGACTTAAG+AGG | + | chr7.2:18556207-18556226 | MS.gene014019:CDS | 35.0% | |
| GAAATCAAAGCAGATGAATG+TGG | - | chr7.2:18554710-18554729 | None:intergenic | 35.0% | |
| GAGAGAAAAATTGAGTTCAG+TGG | + | chr7.2:18553750-18553769 | MS.gene014019:intron | 35.0% | |
| GAGTCAACAAGTTTCTTGTT+GGG | - | chr7.2:18555374-18555393 | None:intergenic | 35.0% | |
| GATATTATGGACTTAAGAGG+GGG | + | chr7.2:18556210-18556229 | MS.gene014019:CDS | 35.0% | |
| GATGCAATTGCTCGATATTA+TGG | + | chr7.2:18556197-18556216 | MS.gene014019:CDS | 35.0% | |
| GGAAAATATCAGTCGTAAGA+TGG | - | chr7.2:18554760-18554779 | None:intergenic | 35.0% | |
| GGTTGTATCACTAATCAATG+TGG | - | chr7.2:18555887-18555906 | None:intergenic | 35.0% | |
| GTAAGATGGCTTATGCTAAA+GGG | - | chr7.2:18554746-18554765 | None:intergenic | 35.0% | |
| GTAGTTAAAGTTACCTACAC+TGG | + | chr7.2:18556236-18556255 | MS.gene014019:CDS | 35.0% | |
| TAAGTGTTTGTTCACCAAGA+TGG | + | chr7.2:18552487-18552506 | MS.gene014019:CDS | 35.0% | |
| TACAATCCTTGATCCTATCT+AGG | + | chr7.2:18554921-18554940 | MS.gene014019:intron | 35.0% | |
| TATGCTTCCATTATCCATCT+TGG | - | chr7.2:18552504-18552523 | None:intergenic | 35.0% | |
| TCATGTACTTGACCTGTTTA+AGG | + | chr7.2:18554061-18554080 | MS.gene014019:intron | 35.0% | |
| TCTCAAGTAAATCTGAAGAG+TGG | + | chr7.2:18554416-18554435 | MS.gene014019:intron | 35.0% | |
| TCTTCCTAGGGATATATCAA+GGG | - | chr7.2:18554455-18554474 | None:intergenic | 35.0% | |
| TGTACTTGCATGCATTCTTA+GGG | - | chr7.2:18553167-18553186 | None:intergenic | 35.0% | |
| TTATCCCTTGATATATCCCT+AGG | + | chr7.2:18554448-18554467 | MS.gene014019:intron | 35.0% | |
| TTCAATTGATGAGTCAGGAA+TGG | + | chr7.2:18553712-18553731 | MS.gene014019:intron | 35.0% | |
| TTGCATCTGTTTGTAGCATT+CGG | - | chr7.2:18556184-18556203 | None:intergenic | 35.0% | |
| TTGTACTTGCATGCATTCTT+AGG | - | chr7.2:18553168-18553187 | None:intergenic | 35.0% | |
| TTGTTCACCAAGATGGATAA+TGG | + | chr7.2:18552494-18552513 | MS.gene014019:CDS | 35.0% | |
| TTTCTGAACCTACATTTGCA+GGG | + | chr7.2:18553309-18553328 | MS.gene014019:intron | 35.0% | |
| TTTGGATCCTCAGTATCTAT+AGG | + | chr7.2:18553280-18553299 | MS.gene014019:intron | 35.0% | |
| ! | ACATTAGCCTCTGACATAAA+TGG | + | chr7.2:18553649-18553668 | MS.gene014019:intron | 35.0% |
| ! | ATGACTTTTCTCTTACAAGG+TGG | - | chr7.2:18554045-18554064 | None:intergenic | 35.0% |
| ! | CAATGACATTTTCAGCAACT+TGG | - | chr7.2:18554335-18554354 | None:intergenic | 35.0% |
| ! | TACAAGGTGGGATTTTCAAA+TGG | - | chr7.2:18554032-18554051 | None:intergenic | 35.0% |
| ! | TACTTGAGATTTTCTAGGTG+TGG | - | chr7.2:18554405-18554424 | None:intergenic | 35.0% |
| ! | TGACTTTTCTCTTACAAGGT+GGG | - | chr7.2:18554044-18554063 | None:intergenic | 35.0% |
| ! | TTGTTGGGTTTTGCAGATTT+TGG | + | chr7.2:18552796-18552815 | MS.gene014019:intron | 35.0% |
| !! | CAGATTTTGGTGGTTTTTAG+TGG | + | chr7.2:18552809-18552828 | MS.gene014019:intron | 35.0% |
| !! | CATCGTTGTTATTGCTGTTT+CGG | - | chr7.2:18552426-18552445 | None:intergenic | 35.0% |
| !! | CTAATGAGTGTTTGAGTTGT+TGG | + | chr7.2:18552780-18552799 | MS.gene014019:intron | 35.0% |
| AAAACCTCAACTTGGTAAGG+GGG | + | chr7.2:18553681-18553700 | MS.gene014019:intron | 40.0% | |
| AAGGTAGATAAGCCATGCAT+TGG | + | chr7.2:18554499-18554518 | MS.gene014019:intron | 40.0% | |
| AATCAAAACACACTGGAGTC+CGG | - | chr7.2:18555245-18555264 | None:intergenic | 40.0% | |
| AATCAATGTGGGATCTCAAC+AGG | - | chr7.2:18555875-18555894 | None:intergenic | 40.0% | |
| AATGCATGGCTTATCTACCT+TGG | - | chr7.2:18554500-18554519 | None:intergenic | 40.0% | |
| ACAACGATGGAGATCGAAAA+CGG | + | chr7.2:18552437-18552456 | MS.gene014019:CDS | 40.0% | |
| AGACCAGAATCAAAACACAC+TGG | - | chr7.2:18555252-18555271 | None:intergenic | 40.0% | |
| AGAGCTGGATTTCATCAGAA+GGG | - | chr7.2:18552595-18552614 | None:intergenic | 40.0% | |
| AGCAGTCCAAAACAGAAGAA+AGG | - | chr7.2:18554812-18554831 | None:intergenic | 40.0% | |
| AGGAACACCTATAGATACTG+AGG | - | chr7.2:18553290-18553309 | None:intergenic | 40.0% | |
| AGGGATAGTGAAAGTGAATG+GGG | + | chr7.2:18552835-18552854 | MS.gene014019:CDS | 40.0% | |
| AGGTAGATAAGCCATGCATT+GGG | + | chr7.2:18554500-18554519 | MS.gene014019:intron | 40.0% | |
| ATACAACAGACATGGTTGAC+TGG | - | chr7.2:18554295-18554314 | None:intergenic | 40.0% | |
| ATCGATAGGTAACATGCATC+TGG | - | chr7.2:18556271-18556290 | None:intergenic | 40.0% | |
| ATGTTACCTATCGATGCGTT+TGG | + | chr7.2:18556276-18556295 | MS.gene014019:CDS | 40.0% | |
| ATTTCAGAAGGCTTGCAAAG+GGG | + | chr7.2:18554638-18554657 | MS.gene014019:intron | 40.0% | |
| CAAAACCTCAACTTGGTAAG+GGG | + | chr7.2:18553680-18553699 | MS.gene014019:intron | 40.0% | |
| CAGCATTCAATTGATGAGTC+AGG | + | chr7.2:18553707-18553726 | MS.gene014019:intron | 40.0% | |
| CAGGGATAGTGAAAGTGAAT+GGG | + | chr7.2:18552834-18552853 | MS.gene014019:CDS | 40.0% | |
| CAGGTCAGTCGATATAACTT+GGG | + | chr7.2:18555574-18555593 | MS.gene014019:intron | 40.0% | |
| CGAAACAGCAATAACAACGA+TGG | + | chr7.2:18552424-18552443 | MS.gene014019:CDS | 40.0% | |
| CGTAAGATGGCTTATGCTAA+AGG | - | chr7.2:18554747-18554766 | None:intergenic | 40.0% | |
| CTACAACGTCTCATTCTGAA+TGG | + | chr7.2:18555206-18555225 | MS.gene014019:intron | 40.0% | |
| CTGCAAATGTAGGTTCAGAA+AGG | - | chr7.2:18553310-18553329 | None:intergenic | 40.0% | |
| CTTTCTGAACCTACATTTGC+AGG | + | chr7.2:18553308-18553327 | MS.gene014019:intron | 40.0% | |
| CTTTGCTCCATTTATGTCAG+AGG | - | chr7.2:18553659-18553678 | None:intergenic | 40.0% | |
| GAAACCTCGCAAGTATACTT+TGG | + | chr7.2:18553796-18553815 | MS.gene014019:intron | 40.0% | |
| GAATGGCTTGACTTTGTATC+CGG | + | chr7.2:18555223-18555242 | MS.gene014019:intron | 40.0% | |
| GAATGTGGGATTAGAGACTA+TGG | - | chr7.2:18554695-18554714 | None:intergenic | 40.0% | |
| GACAAAACCTCAACTTGGTA+AGG | + | chr7.2:18553678-18553697 | MS.gene014019:intron | 40.0% | |
| GATGATTTCCGCCAAATTCA+TGG | + | chr7.2:18552620-18552639 | MS.gene014019:CDS | 40.0% | |
| GATTTCAGAAGGCTTGCAAA+GGG | + | chr7.2:18554637-18554656 | MS.gene014019:intron | 40.0% | |
| GCAAAGACAAAACCTCAACT+TGG | + | chr7.2:18553673-18553692 | MS.gene014019:intron | 40.0% | |
| GCAGTCCAAAACAGAAGAAA+GGG | - | chr7.2:18554811-18554830 | None:intergenic | 40.0% | |
| TAGACCAAAGTATACTTGCG+AGG | - | chr7.2:18553803-18553822 | None:intergenic | 40.0% | |
| TATGTCAGAGGCTAATGTTG+TGG | - | chr7.2:18553647-18553666 | None:intergenic | 40.0% | |
| TCATATAGTCTACCAGACCA+AGG | + | chr7.2:18554480-18554499 | MS.gene014019:intron | 40.0% | |
| TCGATAGGTAACATGCATCT+GGG | - | chr7.2:18556270-18556289 | None:intergenic | 40.0% | |
| TGCACAGGAAAAATCAGCAT+TGG | - | chr7.2:18554270-18554289 | None:intergenic | 40.0% | |
| TGCATCTGTTTGTAGCATTC+GGG | - | chr7.2:18556183-18556202 | None:intergenic | 40.0% | |
| TGGCATGAGTAGCAGTAAAA+CGG | - | chr7.2:18552670-18552689 | None:intergenic | 40.0% | |
| TTGGATTTCCCTGCAAATGT+AGG | - | chr7.2:18553320-18553339 | None:intergenic | 40.0% | |
| ! | AAAACTAGGTATCTGGCTCA+AGG | + | chr7.2:18552752-18552771 | MS.gene014019:intron | 40.0% |
| ! | AATAGAAGTGCAGCACAAGA+TGG | - | chr7.2:18554781-18554800 | None:intergenic | 40.0% |
| ! | ACACATTTGGGATCACCAAA+AGG | - | chr7.2:18554611-18554630 | None:intergenic | 40.0% |
| ! | ATCAAAGAGAGAGACCCTTT+TGG | - | chr7.2:18552702-18552721 | None:intergenic | 40.0% |
| ! | GCTGTTTATACTCTGGGAAA+TGG | + | chr7.2:18555639-18555658 | MS.gene014019:intron | 40.0% |
| ! | TGTATTGAAGCCAAAGCATC+AGG | + | chr7.2:18555495-18555514 | MS.gene014019:CDS | 40.0% |
| ! | TGTTTCTGACTGGAATCTGA+TGG | + | chr7.2:18553095-18553114 | MS.gene014019:intron | 40.0% |
| ! | TTCTGAGCTTTTGTAGACTC+TGG | - | chr7.2:18553495-18553514 | None:intergenic | 40.0% |
| ! | TTGCATGTTGTGTTTCTGAC+TGG | + | chr7.2:18553085-18553104 | MS.gene014019:intron | 40.0% |
| ! | TTGGGTTTTGCAGATTTTGG+TGG | + | chr7.2:18552799-18552818 | MS.gene014019:intron | 40.0% |
| ! | TTTGGTGATCCCAAATGTGT+GGG | + | chr7.2:18554611-18554630 | MS.gene014019:intron | 40.0% |
| !! | TTTTGGTGATCCCAAATGTG+TGG | + | chr7.2:18554610-18554629 | MS.gene014019:intron | 40.0% |
| !!! | ACTCCAGTGTGTTTTGATTC+TGG | + | chr7.2:18555246-18555265 | MS.gene014019:intron | 40.0% |
| AAACGGAGACGATCAACATC+AGG | - | chr7.2:18552653-18552672 | None:intergenic | 45.0% | |
| AAGATGTGGTGAGTTCACAG+AGG | - | chr7.2:18554836-18554855 | None:intergenic | 45.0% | |
| AAGTGAGTAGGGATGCTGTA+GGG | - | chr7.2:18555299-18555318 | None:intergenic | 45.0% | |
| AATGGGGTAAGAGACATAGC+AGG | + | chr7.2:18552851-18552870 | MS.gene014019:CDS | 45.0% | |
| ATGGCTTATCTACCTTGGTC+TGG | - | chr7.2:18554495-18554514 | None:intergenic | 45.0% | |
| ATTTCGTTCAGGCCTGAGAT+CGG | - | chr7.2:18555605-18555624 | None:intergenic | 45.0% | |
| CATGCTTACAACCCAATGCA+TGG | - | chr7.2:18554514-18554533 | None:intergenic | 45.0% | |
| CCAGGGATAGTGAAAGTGAA+TGG | + | chr7.2:18552833-18552852 | MS.gene014019:CDS | 45.0% | |
| CCATTCACTTTCACTATCCC+TGG | - | chr7.2:18552836-18552855 | None:intergenic | 45.0% | |
| CGAGATCCTAGATAGGATCA+AGG | - | chr7.2:18554930-18554949 | None:intergenic | 45.0% | |
| CTTGAGATGCTCAAAGACAG+AGG | + | chr7.2:18552560-18552579 | MS.gene014019:CDS | 45.0% | |
| CTTGCAAAGGGGACAAAATG+TGG | + | chr7.2:18554649-18554668 | MS.gene014019:intron | 45.0% | |
| GAAATCCAGCCCACACATTT+GGG | - | chr7.2:18554623-18554642 | None:intergenic | 45.0% | |
| GACGATCAACATCAGGAGAT+TGG | - | chr7.2:18552646-18552665 | None:intergenic | 45.0% | |
| GAGAGCTGGATTTCATCAGA+AGG | - | chr7.2:18552596-18552615 | None:intergenic | 45.0% | |
| GCAAGTTAGACAACCATGCT+TGG | + | chr7.2:18553906-18553925 | MS.gene014019:intron | 45.0% | |
| GCAGGTCAGTCGATATAACT+TGG | + | chr7.2:18555573-18555592 | MS.gene014019:intron | 45.0% | |
| GCATCTGTTTGTAGCATTCG+GGG | - | chr7.2:18556182-18556201 | None:intergenic | 45.0% | |
| GGAAATCATCAAGAGAGAGC+TGG | - | chr7.2:18552610-18552629 | None:intergenic | 45.0% | |
| GGATTTCAGAAGGCTTGCAA+AGG | + | chr7.2:18554636-18554655 | MS.gene014019:intron | 45.0% | |
| GTGAACAGAGAGAGTTTGAC+TGG | + | chr7.2:18552881-18552900 | MS.gene014019:CDS | 45.0% | |
| TCAGTCAACACCTGATGCTT+TGG | - | chr7.2:18555508-18555527 | None:intergenic | 45.0% | |
| TGAAATCCAGCCCACACATT+TGG | - | chr7.2:18554624-18554643 | None:intergenic | 45.0% | |
| ! | AAAGAGAGAGACCCTTTTGG+AGG | - | chr7.2:18552699-18552718 | None:intergenic | 45.0% |
| ! | AAGAGAGAGACCCTTTTGGA+GGG | - | chr7.2:18552698-18552717 | None:intergenic | 45.0% |
| ! | CAGGAGATTGGCCATGAATT+TGG | - | chr7.2:18552634-18552653 | None:intergenic | 45.0% |
| ! | GAGATTGGCCATGAATTTGG+CGG | - | chr7.2:18552631-18552650 | None:intergenic | 45.0% |
| ! | TGCAGTGAATTGGCACCTTT+TGG | + | chr7.2:18554593-18554612 | MS.gene014019:intron | 45.0% |
| ! | TGCGACCCTTTCTTCTGTTT+TGG | + | chr7.2:18554803-18554822 | MS.gene014019:intron | 45.0% |
| !! | CGTTGTTATTGCTGTTTCGG+TGG | - | chr7.2:18552423-18552442 | None:intergenic | 45.0% |
| !!! | TTTTTTATAATATTTTTTGT+GGG | + | chr7.2:18553040-18553059 | MS.gene014019:intron | 5.0% |
| !!! | TTTTTTTATAATATTTTTTG+TGG | + | chr7.2:18553039-18553058 | MS.gene014019:intron | 5.0% |
| ATGCCACTAACCCCTCCAAA+AGG | + | chr7.2:18552684-18552703 | MS.gene014019:CDS | 50.0% | |
| CAAGTGAGTAGGGATGCTGT+AGG | - | chr7.2:18555300-18555319 | None:intergenic | 50.0% | |
| CTGGGTGATTTCACCAGTGT+AGG | - | chr7.2:18556252-18556271 | None:intergenic | 50.0% | |
| GATGGCTTATGCTAAAGGGC+TGG | - | chr7.2:18554742-18554761 | None:intergenic | 50.0% | |
| GTTTCCCCCTTACCAAGTTG+AGG | - | chr7.2:18553688-18553707 | None:intergenic | 50.0% | |
| TGCCACTAACCCCTCCAAAA+GGG | + | chr7.2:18552685-18552704 | MS.gene014019:CDS | 50.0% | |
| TTATGGACTTAAGAGGGGGC+AGG | + | chr7.2:18556214-18556233 | MS.gene014019:CDS | 50.0% | |
| !! | AGAGAGAGACCCTTTTGGAG+GGG | - | chr7.2:18552697-18552716 | None:intergenic | 50.0% |
| !! | TGTGTGGGCTGGATTTCAGA+AGG | + | chr7.2:18554626-18554645 | MS.gene014019:intron | 50.0% |
| !!! | TGGTGGTTTTTAGTGGGCCA+GGG | + | chr7.2:18552816-18552835 | MS.gene014019:CDS | 50.0% |
| !!! | TTGGTGGTTTTTAGTGGGCC+AGG | + | chr7.2:18552815-18552834 | MS.gene014019:CDS | 50.0% |
| ACTTGGGAAGAGCCGATCTC+AGG | + | chr7.2:18555590-18555609 | MS.gene014019:intron | 55.0% | |
| CATGGTTGACTGGTGTGCAC+AGG | - | chr7.2:18554285-18554304 | None:intergenic | 55.0% | |
| GCGAGGTTTCATGCAGCACA+AGG | - | chr7.2:18553786-18553805 | None:intergenic | 55.0% | |
| GTGATCCCAAATGTGTGGGC+TGG | + | chr7.2:18554615-18554634 | MS.gene014019:intron | 55.0% | |
| !! | ATGCTAAAGGGCTGGTCGCT+GGG | - | chr7.2:18554734-18554753 | None:intergenic | 55.0% |
| !! | GACCCTTTTGGAGGGGTTAG+TGG | - | chr7.2:18552690-18552709 | None:intergenic | 55.0% |
| !! | TATGCTAAAGGGCTGGTCGC+TGG | - | chr7.2:18554735-18554754 | None:intergenic | 55.0% |
| !! | TCGCGCACAGACTCGGTTTT+TGG | - | chr7.2:18553836-18553855 | None:intergenic | 55.0% |
| GATTCGCTCGCGCACAGACT+CGG | - | chr7.2:18553843-18553862 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 18552389 | 18556301 | 18552389 | ID=MS.gene014019 |
| chr7.2 | mRNA | 18552389 | 18556301 | 18552389 | ID=MS.gene014019.t1;Parent=MS.gene014019 |
| chr7.2 | exon | 18552389 | 18552706 | 18552389 | ID=MS.gene014019.t1.exon1;Parent=MS.gene014019.t1 |
| chr7.2 | CDS | 18552389 | 18552706 | 18552389 | ID=cds.MS.gene014019.t1;Parent=MS.gene014019.t1 |
| chr7.2 | exon | 18552812 | 18552988 | 18552812 | ID=MS.gene014019.t1.exon2;Parent=MS.gene014019.t1 |
| chr7.2 | CDS | 18552812 | 18552988 | 18552812 | ID=cds.MS.gene014019.t1;Parent=MS.gene014019.t1 |
| chr7.2 | exon | 18555463 | 18555576 | 18555463 | ID=MS.gene014019.t1.exon3;Parent=MS.gene014019.t1 |
| chr7.2 | CDS | 18555463 | 18555576 | 18555463 | ID=cds.MS.gene014019.t1;Parent=MS.gene014019.t1 |
| chr7.2 | exon | 18556176 | 18556301 | 18556176 | ID=MS.gene014019.t1.exon4;Parent=MS.gene014019.t1 |
| chr7.2 | CDS | 18556176 | 18556301 | 18556176 | ID=cds.MS.gene014019.t1;Parent=MS.gene014019.t1 |
| Gene Sequence |
| Protein sequence |
