Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017777.t1 | XP_003625033.1 | 96.5 | 229 | 5 | 1 | 1 | 226 | 20 | 248 | 8.30E-116 | 426.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017777.t1 | Q9M1J2 | 56.6 | 226 | 94 | 1 | 1 | 226 | 1 | 222 | 1.0e-69 | 264.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017777.t1 | A2Q2Z5 | 96.5 | 229 | 5 | 1 | 1 | 226 | 20 | 248 | 6.0e-116 | 426.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene017777 | MS.gene09560 | PPI |
MS.gene017777 | MS.gene046919 | PPI |
MS.gene017777 | MS.gene20258 | PPI |
MS.gene017777 | MS.gene39138 | PPI |
MS.gene92338 | MS.gene017777 | PPI |
MS.gene015218 | MS.gene017777 | PPI |
MS.gene20260 | MS.gene017777 | PPI |
MS.gene014019 | MS.gene017777 | PPI |
MS.gene017777 | MS.gene015219 | PPI |
MS.gene017777 | MS.gene38787 | PPI |
MS.gene57185 | MS.gene017777 | PPI |
MS.gene017777 | MS.gene57186 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017777.t1 | MTR_7g090220 | 96.507 | 229 | 5 | 1 | 1 | 226 | 20 | 248 | 9.05e-164 | 452 |
MS.gene017777.t1 | MTR_6g042230 | 39.196 | 199 | 119 | 2 | 28 | 225 | 7 | 204 | 4.47e-43 | 144 |
MS.gene017777.t1 | MTR_5g005470 | 40.000 | 200 | 117 | 2 | 28 | 225 | 7 | 205 | 3.08e-42 | 142 |
MS.gene017777.t1 | MTR_6g088020 | 39.086 | 197 | 115 | 2 | 31 | 223 | 10 | 205 | 3.14e-41 | 140 |
MS.gene017777.t1 | MTR_6g088010 | 39.267 | 191 | 111 | 2 | 37 | 223 | 16 | 205 | 2.10e-40 | 137 |
MS.gene017777.t1 | MTR_5g016200 | 37.949 | 195 | 119 | 2 | 28 | 222 | 7 | 199 | 1.08e-39 | 135 |
MS.gene017777.t1 | MTR_5g016220 | 37.000 | 200 | 123 | 2 | 28 | 225 | 132 | 330 | 3.57e-39 | 138 |
MS.gene017777.t1 | MTR_3g058520 | 35.211 | 213 | 79 | 7 | 4 | 215 | 5 | 159 | 9.61e-30 | 108 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017777.t1 | AT3G57080 | 56.637 | 226 | 94 | 1 | 1 | 226 | 1 | 222 | 2.35e-96 | 280 |
MS.gene017777.t1 | AT2G41340 | 60.294 | 204 | 81 | 0 | 22 | 225 | 14 | 217 | 2.24e-92 | 270 |
MS.gene017777.t1 | AT2G41340 | 57.988 | 169 | 71 | 0 | 22 | 190 | 14 | 182 | 3.96e-71 | 216 |
MS.gene017777.t1 | AT2G41340 | 59.756 | 164 | 66 | 0 | 22 | 185 | 14 | 177 | 8.07e-71 | 214 |
MS.gene017777.t1 | AT3G54490 | 43.541 | 209 | 118 | 0 | 17 | 225 | 24 | 232 | 2.81e-61 | 192 |
MS.gene017777.t1 | AT3G22320 | 37.000 | 200 | 123 | 2 | 28 | 225 | 6 | 204 | 5.86e-37 | 129 |
MS.gene017777.t1 | AT5G57980 | 36.058 | 208 | 126 | 4 | 22 | 223 | 1 | 207 | 5.27e-32 | 116 |
Find 44 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGGAGATTGGCCATGAATT+TGG | 0.226350 | 7.3:-18952468 | None:intergenic |
CTTGTATATCATACTTCTTC+AGG | 0.242396 | 7.3:-18955380 | None:intergenic |
GATGCAATTGCTCGATATTA+TGG | 0.243591 | 7.3:+18956534 | MS.gene017777:CDS |
TGCATCTGTTTGTAGCATTC+GGG | 0.306371 | 7.3:-18956517 | None:intergenic |
GATGATTTCCGCCAAATTCA+TGG | 0.323871 | 7.3:+18952457 | MS.gene017777:CDS |
TTGCATCTGTTTGTAGCATT+CGG | 0.338079 | 7.3:-18956518 | None:intergenic |
ATCGATAGGTAACATGCATC+TGG | 0.368224 | 7.3:-18956605 | None:intergenic |
TCAGTCAACACCTGATGCTT+TGG | 0.372400 | 7.3:-18955339 | None:intergenic |
TGTTAATCTTCTCTCTTTCA+AGG | 0.372770 | 7.3:+18952789 | MS.gene017777:CDS |
ATCAAAGAGAGAGACCCTTT+TGG | 0.387197 | 7.3:-18952536 | None:intergenic |
TTGTTCACCAAGATGGATAA+TGG | 0.412324 | 7.3:+18952331 | MS.gene017777:CDS |
TATGCTTCCATTATCCATCT+TGG | 0.423538 | 7.3:-18952338 | None:intergenic |
ATGCCACTAACCCCTCCAAA+AGG | 0.454191 | 7.3:+18952521 | MS.gene017777:CDS |
TGTATTGAAGCCAAAGCATC+AGG | 0.467598 | 7.3:+18955329 | MS.gene017777:CDS |
GACGATCAACATCAGGAGAT+TGG | 0.475030 | 7.3:-18952480 | None:intergenic |
TAAGTGTTTGTTCACCAAGA+TGG | 0.482415 | 7.3:+18952324 | MS.gene017777:CDS |
CTGGGATAGTGAAAGTGAAT+GGG | 0.483393 | 7.3:+18952671 | MS.gene017777:CDS |
ACAACGATGGAGATCGAAAA+CGG | 0.484630 | 7.3:+18952274 | None:intergenic |
GTGAACAGAGAGAGTTTGAC+TGG | 0.517766 | 7.3:+18952718 | MS.gene017777:CDS |
CCATTCACTTTCACTATCCC+AGG | 0.519525 | 7.3:-18952670 | None:intergenic |
TGGCATGAGTAGCAGTAAAA+CGG | 0.535822 | 7.3:-18952504 | None:intergenic |
GAGATTGGCCATGAATTTGG+CGG | 0.538467 | 7.3:-18952465 | None:intergenic |
CCTGGGATAGTGAAAGTGAA+TGG | 0.538507 | 7.3:+18952670 | MS.gene017777:CDS |
GAGAGCTGGATTTCATCAGA+AGG | 0.539635 | 7.3:-18952430 | None:intergenic |
AAACGGAGACGATCAACATC+AGG | 0.547032 | 7.3:-18952487 | None:intergenic |
GTATGATATACAAGAAAAGC+AGG | 0.547642 | 7.3:+18955389 | MS.gene017777:CDS |
ATGCATCTGGGTGATTTCAC+CGG | 0.552988 | 7.3:-18956592 | None:intergenic |
ATGTTACCTATCGATGCGTT+TGG | 0.556524 | 7.3:+18956613 | MS.gene017777:CDS |
TGCCACTAACCCCTCCAAAA+GGG | 0.558127 | 7.3:+18952522 | MS.gene017777:CDS |
TCGATATTATGGACTTCAGA+GGG | 0.558922 | 7.3:+18956545 | MS.gene017777:CDS |
CTGGGTGATTTCACCGGTGT+AGG | 0.580902 | 7.3:-18956586 | None:intergenic |
CTCGATATTATGGACTTCAG+AGG | 0.581661 | 7.3:+18956544 | MS.gene017777:CDS |
ATATCACCAAACGCATCGAT+AGG | 0.584034 | 7.3:-18956619 | None:intergenic |
TCGATAGGTAACATGCATCT+GGG | 0.601581 | 7.3:-18956604 | None:intergenic |
GGAAATCATCAAGAGAGAGC+TGG | 0.605433 | 7.3:-18952444 | None:intergenic |
ATCTTGGTGAACAAACACTT+AGG | 0.617123 | 7.3:-18952322 | None:intergenic |
AGAGCTGGATTTCATCAGAA+GGG | 0.630001 | 7.3:-18952429 | None:intergenic |
AATGGGGTAAGAGACATAGC+AGG | 0.645159 | 7.3:+18952688 | MS.gene017777:CDS |
GCATCTGTTTGTAGCATTCG+GGG | 0.645626 | 7.3:-18956516 | None:intergenic |
GATATTATGGACTTCAGAGG+GGG | 0.662903 | 7.3:+18956547 | MS.gene017777:CDS |
CTTGAGATGCTCAAAGACAG+AGG | 0.664708 | 7.3:+18952397 | MS.gene017777:CDS |
TGGGATAGTGAAAGTGAATG+GGG | 0.668631 | 7.3:+18952672 | MS.gene017777:CDS |
GTAGTTAAAGTTACCTACAC+CGG | 0.687721 | 7.3:+18956573 | MS.gene017777:CDS |
CGATATTATGGACTTCAGAG+GGG | 0.705019 | 7.3:+18956546 | MS.gene017777:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAGTAATATAGAAATAAAT+AGG | + | chr7.3:18954018-18954037 | MS.gene017777:intron | 10.0% |
!!! | TAATAAGATAATAATTTTTC+GGG | + | chr7.3:18955975-18955994 | MS.gene017777:intron | 10.0% |
!!! | TATTAATTTATGATTTTCTT+GGG | - | chr7.3:18956023-18956042 | None:intergenic | 10.0% |
!!! | TTATTAATTTATGATTTTCT+TGG | - | chr7.3:18956024-18956043 | None:intergenic | 10.0% |
!! | AAACATTGAAAAAAGTTATT+TGG | - | chr7.3:18955742-18955761 | None:intergenic | 15.0% |
!! | AGAAATAAATAGGTTTAAAT+AGG | + | chr7.3:18954028-18954047 | MS.gene017777:intron | 15.0% |
!! | AGATATCTAAATATTAATGT+AGG | - | chr7.3:18955170-18955189 | None:intergenic | 15.0% |
!! | TCTAAATTAATAAATTTCTC+CGG | + | chr7.3:18956310-18956329 | MS.gene017777:intron | 15.0% |
!! | TTATAGGTTTCTTAATATTA+GGG | - | chr7.3:18953365-18953384 | None:intergenic | 15.0% |
!! | TTTATAGGTTTCTTAATATT+AGG | - | chr7.3:18953366-18953385 | None:intergenic | 15.0% |
!!! | AAACTCTTTAATTTTATACT+CGG | + | chr7.3:18955871-18955890 | MS.gene017777:intron | 15.0% |
!!! | AGTTTTTCAATTTTTTACAT+TGG | - | chr7.3:18955947-18955966 | None:intergenic | 15.0% |
!!! | TATACTTTTTTCTAATGTAA+TGG | - | chr7.3:18953834-18953853 | None:intergenic | 15.0% |
!!! | TATTTTTTCATATGAAAACT+AGG | + | chr7.3:18952575-18952594 | MS.gene017777:intron | 15.0% |
!! | AAAAAACATTGAGTTAAAAG+AGG | - | chr7.3:18952855-18952874 | None:intergenic | 20.0% |
!! | AAATCATGTTGAATTATCAA+TGG | - | chr7.3:18955607-18955626 | None:intergenic | 20.0% |
!! | AACAAGACTTAATATAAGAA+TGG | - | chr7.3:18956485-18956504 | None:intergenic | 20.0% |
!! | AACGAATATGTAGAAAATAT+AGG | + | chr7.3:18953973-18953992 | MS.gene017777:intron | 20.0% |
!! | ATAACTAAGAAAATAAGATG+TGG | - | chr7.3:18954684-18954703 | None:intergenic | 20.0% |
!! | ATCAAAAAGTTGAATTAGTT+AGG | + | chr7.3:18953196-18953215 | MS.gene017777:intron | 20.0% |
!! | CTCTATAAATTAATAATGTC+AGG | - | chr7.3:18956337-18956356 | None:intergenic | 20.0% |
!! | CTTAATATTAGGGTTTAATT+TGG | - | chr7.3:18953355-18953374 | None:intergenic | 20.0% |
!! | TATATGAATTTATCTTCCTA+GGG | - | chr7.3:18954301-18954320 | None:intergenic | 20.0% |
!! | TATGTATCTTTGACATTTAT+AGG | - | chr7.3:18953381-18953400 | None:intergenic | 20.0% |
!! | TTCCAACTTCAAAAAAAAAT+AGG | - | chr7.3:18953261-18953280 | None:intergenic | 20.0% |
!!! | AGAGTATTTGGATATTAATT+TGG | - | chr7.3:18954071-18954090 | None:intergenic | 20.0% |
!!! | ATTCTCTTTTTATGCATATA+AGG | + | chr7.3:18956378-18956397 | MS.gene017777:intron | 20.0% |
!!! | ATTGATAATTCAACATGATT+TGG | + | chr7.3:18955606-18955625 | MS.gene017777:intron | 20.0% |
!!! | CAATGTTTGAGTTAAATTTT+GGG | + | chr7.3:18955754-18955773 | MS.gene017777:intron | 20.0% |
!!! | GTTTAAAGAAGTATTATGAT+TGG | - | chr7.3:18953175-18953194 | None:intergenic | 20.0% |
!!! | TACCTATTTTTTTTTGAAGT+TGG | + | chr7.3:18953256-18953275 | MS.gene017777:intron | 20.0% |
!!! | TATTTTTGTGTTAATGTCAA+TGG | - | chr7.3:18953418-18953437 | None:intergenic | 20.0% |
!!! | TCAATGTTTGAGTTAAATTT+TGG | + | chr7.3:18955753-18955772 | MS.gene017777:intron | 20.0% |
!!! | TCTAAAGTAATAAATTTGTC+CGG | + | chr7.3:18955909-18955928 | MS.gene017777:intron | 20.0% |
!!! | TTTGTTTTTCTGTTAGAAAA+TGG | + | chr7.3:18953083-18953102 | MS.gene017777:intron | 20.0% |
! | AATAACAGCTTAGAGATATT+TGG | + | chr7.3:18953771-18953790 | MS.gene017777:intron | 25.0% |
! | ACAAACAAAATATTTCGTTC+AGG | - | chr7.3:18955450-18955469 | None:intergenic | 25.0% |
! | ACCTTAAACAAACAATCTTA+AGG | - | chr7.3:18955552-18955571 | None:intergenic | 25.0% |
! | ATCAAATTATCAAGTGAGTA+GGG | - | chr7.3:18955144-18955163 | None:intergenic | 25.0% |
! | CTATATGAATTTATCTTCCT+AGG | - | chr7.3:18954302-18954321 | None:intergenic | 25.0% |
! | CTTACATGCAAATTTCAATA+AGG | + | chr7.3:18954979-18954998 | MS.gene017777:intron | 25.0% |
! | TAAATTAATAATGTCAGGAC+CGG | - | chr7.3:18956332-18956351 | None:intergenic | 25.0% |
! | TAATATAAGAATGGTAGCAT+TGG | - | chr7.3:18956476-18956495 | None:intergenic | 25.0% |
! | TATCAAATTATCAAGTGAGT+AGG | - | chr7.3:18955145-18955164 | None:intergenic | 25.0% |
! | TCATTCTTTAATGTTGAATC+TGG | + | chr7.3:18954932-18954951 | MS.gene017777:intron | 25.0% |
! | TCCTTAAGATTGTTTGTTTA+AGG | + | chr7.3:18955548-18955567 | MS.gene017777:intron | 25.0% |
!! | AGATTTACTTGAGATTTTCT+AGG | - | chr7.3:18954244-18954263 | None:intergenic | 25.0% |
!! | TACGCATAATTTAAGTTATC+TGG | - | chr7.3:18954804-18954823 | None:intergenic | 25.0% |
!! | TCTTAGTCAACTGTTATTTA+TGG | + | chr7.3:18955578-18955597 | MS.gene017777:intron | 25.0% |
!! | TTGAAGAATGTTTGGAATTA+AGG | + | chr7.3:18953285-18953304 | MS.gene017777:intron | 25.0% |
!! | TTTCAAGGTTGAAATTTTTC+AGG | + | chr7.3:18952804-18952823 | MS.gene017777:CDS | 25.0% |
!!! | AACTAATTTGCCTTTTTGTT+TGG | + | chr7.3:18956217-18956236 | MS.gene017777:intron | 25.0% |
!!! | AAGCACCATTTTTTAAAATG+AGG | - | chr7.3:18954862-18954881 | None:intergenic | 25.0% |
!!! | GAGAACCTCATTTTAAAAAA+TGG | + | chr7.3:18954854-18954873 | MS.gene017777:intron | 25.0% |
AAATCAAAGCAGATGAATGT+GGG | - | chr7.3:18954543-18954562 | None:intergenic | 30.0% | |
AACTACATAACAAAGCAAAG+CGG | + | chr7.3:18953450-18953469 | MS.gene017777:intron | 30.0% | |
AAGAATGACTGATGTATTCA+AGG | - | chr7.3:18954920-18954939 | None:intergenic | 30.0% | |
AAGTGCAGGTATTTATTTGA+AGG | + | chr7.3:18953939-18953958 | MS.gene017777:intron | 30.0% | |
CAGTTTCGATAAAAAGAGAT+AGG | - | chr7.3:18954194-18954213 | None:intergenic | 30.0% | |
CTCTTTAGTAATTGGTTAGT+AGG | + | chr7.3:18953800-18953819 | MS.gene017777:intron | 30.0% | |
CTTGTATATCATACTTCTTC+AGG | - | chr7.3:18955383-18955402 | None:intergenic | 30.0% | |
GGATAGTTCTCTTTAGTAAT+TGG | + | chr7.3:18953792-18953811 | MS.gene017777:intron | 30.0% | |
GGATTTAAATACAACAGACA+TGG | - | chr7.3:18954137-18954156 | None:intergenic | 30.0% | |
GTACAGTAAATGTAAACAAG+AGG | - | chr7.3:18956099-18956118 | None:intergenic | 30.0% | |
GTATGATATACAAGAAAAGC+AGG | + | chr7.3:18955389-18955408 | MS.gene017777:CDS | 30.0% | |
GTTGTATCACTAATCAATGT+GGG | - | chr7.3:18955720-18955739 | None:intergenic | 30.0% | |
TCATATGAAAACTAGGTATC+TGG | + | chr7.3:18952582-18952601 | MS.gene017777:intron | 30.0% | |
TGTTAATCTTCTCTCTTTCA+AGG | + | chr7.3:18952789-18952808 | MS.gene017777:CDS | 30.0% | |
TGTTTCAGATTACCTTAAAC+AGG | - | chr7.3:18953910-18953929 | None:intergenic | 30.0% | |
TTAAAATCGAGATCCTAGAT+AGG | - | chr7.3:18954771-18954790 | None:intergenic | 30.0% | |
TTATTCAAACATTCCAAGCA+TGG | - | chr7.3:18953756-18953775 | None:intergenic | 30.0% | |
TTGGCATGTAAGAACAAAAA+TGG | + | chr7.3:18953226-18953245 | MS.gene017777:intron | 30.0% | |
TTGGGACCGAAAATTATAAA+GGG | - | chr7.3:18956005-18956024 | None:intergenic | 30.0% | |
! | AGTTTGAGATGTTTACAAGT+TGG | + | chr7.3:18955011-18955030 | MS.gene017777:intron | 30.0% |
! | CATGATTTGGATATCTGAAA+TGG | + | chr7.3:18955619-18955638 | MS.gene017777:intron | 30.0% |
! | GAAAATGGTAAACATGCTTT+TGG | + | chr7.3:18953098-18953117 | MS.gene017777:intron | 30.0% |
! | GGAGATCCCTTTATAATTTT+CGG | + | chr7.3:18955996-18956015 | MS.gene017777:intron | 30.0% |
! | GGTTAATCAAACAGAGTATT+TGG | - | chr7.3:18954083-18954102 | None:intergenic | 30.0% |
! | GTTTGAGATGTTTACAAGTT+GGG | + | chr7.3:18955012-18955031 | MS.gene017777:intron | 30.0% |
! | TACATGACTTTTCTCTTACA+AGG | - | chr7.3:18953882-18953901 | None:intergenic | 30.0% |
! | TCAGCAACTTGGATTTTATA+AGG | - | chr7.3:18954158-18954177 | None:intergenic | 30.0% |
!! | AGTTCAAGTTGATGCAAAAT+TGG | + | chr7.3:18954399-18954418 | MS.gene017777:intron | 30.0% |
!! | GAATTAGTTAGGCATTGTTT+TGG | + | chr7.3:18953207-18953226 | MS.gene017777:intron | 30.0% |
!! | GGAAACTTTTGAAGAATGTT+TGG | + | chr7.3:18953277-18953296 | MS.gene017777:intron | 30.0% |
!! | TAATGAGTGTTTGAGTTGTT+GGG | + | chr7.3:18952618-18952637 | MS.gene017777:intron | 30.0% |
!!! | ACGGTCTTATAATTTTGACT+TGG | - | chr7.3:18955790-18955809 | None:intergenic | 30.0% |
!!! | AGATTTTGGTGGTTTTTAGT+GGG | + | chr7.3:18952647-18952666 | MS.gene017777:intron | 30.0% |
!!! | ATTGGTTTTTTGCAGTGAAT+TGG | + | chr7.3:18954417-18954436 | MS.gene017777:intron | 30.0% |
!!! | TGTTTTGCTGTTTATACTCT+GGG | + | chr7.3:18955467-18955486 | MS.gene017777:intron | 30.0% |
!!! | TTGTTTTGCTGTTTATACTC+TGG | + | chr7.3:18955466-18955485 | MS.gene017777:intron | 30.0% |
AAACAGACATGATAAAGTGC+AGG | + | chr7.3:18953925-18953944 | MS.gene017777:intron | 35.0% | |
ACAAAACCTCAACTTGGTAA+GGG | + | chr7.3:18953512-18953531 | MS.gene017777:intron | 35.0% | |
ACTACTGTGTTCATATGCAT+TGG | - | chr7.3:18956143-18956162 | None:intergenic | 35.0% | |
ACTGTGCATACCAAACAAAA+AGG | - | chr7.3:18956230-18956249 | None:intergenic | 35.0% | |
AGAAAAATTGAGTTCAGTGG+TGG | + | chr7.3:18953587-18953606 | MS.gene017777:intron | 35.0% | |
AGAGTCAACAAGTTTCTTGT+TGG | - | chr7.3:18955209-18955228 | None:intergenic | 35.0% | |
AGTCAACAAGTTTCTTGTTG+GGG | - | chr7.3:18955207-18955226 | None:intergenic | 35.0% | |
ATCTTCCTAGGGATATATCA+AGG | - | chr7.3:18954290-18954309 | None:intergenic | 35.0% | |
ATCTTGGTGAACAAACACTT+AGG | - | chr7.3:18952325-18952344 | None:intergenic | 35.0% | |
CAACATTCAATTGATGAGTC+AGG | + | chr7.3:18953540-18953559 | MS.gene017777:intron | 35.0% | |
CAACTCAAACACTCATTAGT+CGG | - | chr7.3:18952616-18952635 | None:intergenic | 35.0% | |
CAGTAGTTGCAAAACTGAAA+CGG | - | chr7.3:18955809-18955828 | None:intergenic | 35.0% | |
CATCAACTTGAACTTGCAAA+TGG | - | chr7.3:18954393-18954412 | None:intergenic | 35.0% | |
CCTAAACTCAAGTTTACACT+AGG | - | chr7.3:18953711-18953730 | None:intergenic | 35.0% | |
CCTAGTGTAAACTTGAGTTT+AGG | + | chr7.3:18953708-18953727 | MS.gene017777:intron | 35.0% | |
CTCAAGTAAATCTGAAGAGT+GGG | + | chr7.3:18954251-18954270 | MS.gene017777:intron | 35.0% | |
CTTGGGACCGAAAATTATAA+AGG | - | chr7.3:18956006-18956025 | None:intergenic | 35.0% | |
GAAATCAAAGCAGATGAATG+TGG | - | chr7.3:18954544-18954563 | None:intergenic | 35.0% | |
GAGAGAAAAATTGAGTTCAG+TGG | + | chr7.3:18953584-18953603 | MS.gene017777:intron | 35.0% | |
GAGTCAACAAGTTTCTTGTT+GGG | - | chr7.3:18955208-18955227 | None:intergenic | 35.0% | |
GATGCAATTGCTCGATATTA+TGG | + | chr7.3:18956534-18956553 | MS.gene017777:CDS | 35.0% | |
GGAAAATATCAGTCGTAAGA+TGG | - | chr7.3:18954594-18954613 | None:intergenic | 35.0% | |
GGTTGTATCACTAATCAATG+TGG | - | chr7.3:18955721-18955740 | None:intergenic | 35.0% | |
GTAGTTAAAGTTACCTACAC+CGG | + | chr7.3:18956573-18956592 | MS.gene017777:CDS | 35.0% | |
TAAGTGTTTGTTCACCAAGA+TGG | + | chr7.3:18952324-18952343 | MS.gene017777:CDS | 35.0% | |
TATGCTTCCATTATCCATCT+TGG | - | chr7.3:18952341-18952360 | None:intergenic | 35.0% | |
TCATGTACTTGACCTGTTTA+AGG | + | chr7.3:18953895-18953914 | MS.gene017777:intron | 35.0% | |
TCGATATTATGGACTTCAGA+GGG | + | chr7.3:18956545-18956564 | MS.gene017777:CDS | 35.0% | |
TCTCAAGTAAATCTGAAGAG+TGG | + | chr7.3:18954250-18954269 | MS.gene017777:intron | 35.0% | |
TCTTCCTAGGGATATATCAA+GGG | - | chr7.3:18954289-18954308 | None:intergenic | 35.0% | |
TGTACTTGCATGCATTCTTA+GGG | - | chr7.3:18953003-18953022 | None:intergenic | 35.0% | |
TTAATTTACGTTGAGTCCCA+AGG | + | chr7.3:18956165-18956184 | MS.gene017777:intron | 35.0% | |
TTATCCCTTGATATATCCCT+AGG | + | chr7.3:18954282-18954301 | MS.gene017777:intron | 35.0% | |
TTCAATTGATGAGTCAGGAA+TGG | + | chr7.3:18953545-18953564 | MS.gene017777:intron | 35.0% | |
TTGCATCTGTTTGTAGCATT+CGG | - | chr7.3:18956521-18956540 | None:intergenic | 35.0% | |
TTGTACTTGCATGCATTCTT+AGG | - | chr7.3:18953004-18953023 | None:intergenic | 35.0% | |
TTGTTCACCAAGATGGATAA+TGG | + | chr7.3:18952331-18952350 | MS.gene017777:CDS | 35.0% | |
TTTCTGAACCTACATTTGCA+GGG | + | chr7.3:18953145-18953164 | MS.gene017777:intron | 35.0% | |
TTTGGATCCTCAGTATCTAT+AGG | + | chr7.3:18953116-18953135 | MS.gene017777:intron | 35.0% | |
! | ACATTAGCCTCTGACATAAA+TGG | + | chr7.3:18953482-18953501 | MS.gene017777:intron | 35.0% |
! | ATAAGAATGGTAGCATTGGA+AGG | - | chr7.3:18956472-18956491 | None:intergenic | 35.0% |
! | ATGACTTTTCTCTTACAAGG+TGG | - | chr7.3:18953879-18953898 | None:intergenic | 35.0% |
! | CAATGACATTTTCAGCAACT+TGG | - | chr7.3:18954169-18954188 | None:intergenic | 35.0% |
! | TACAAGGTGGGATTTTCAAA+TGG | - | chr7.3:18953866-18953885 | None:intergenic | 35.0% |
! | TACTTGAGATTTTCTAGGTG+TGG | - | chr7.3:18954239-18954258 | None:intergenic | 35.0% |
! | TGACTTTTCTCTTACAAGGT+GGG | - | chr7.3:18953878-18953897 | None:intergenic | 35.0% |
! | TTGTTGGGTTTTGCAGATTT+TGG | + | chr7.3:18952633-18952652 | MS.gene017777:intron | 35.0% |
!! | CAGATTTTGGTGGTTTTTAG+TGG | + | chr7.3:18952646-18952665 | MS.gene017777:intron | 35.0% |
!! | CTAATGAGTGTTTGAGTTGT+TGG | + | chr7.3:18952617-18952636 | MS.gene017777:intron | 35.0% |
!!! | TTTTTTACATTGGCCCAAGT+CGG | - | chr7.3:18955937-18955956 | None:intergenic | 35.0% |
AAAACCTCAACTTGGTAAGG+GGG | + | chr7.3:18953514-18953533 | MS.gene017777:intron | 40.0% | |
AAGGTAGATAAGCCATGCAT+TGG | + | chr7.3:18954333-18954352 | MS.gene017777:intron | 40.0% | |
AATCAAAACACACTGGAGTC+CGG | - | chr7.3:18955079-18955098 | None:intergenic | 40.0% | |
AATCAATGTGGGATCTCAAC+AGG | - | chr7.3:18955709-18955728 | None:intergenic | 40.0% | |
AATGCATGGCTTATCTACCT+TGG | - | chr7.3:18954334-18954353 | None:intergenic | 40.0% | |
AGACCAGAATCAAAACACAC+TGG | - | chr7.3:18955086-18955105 | None:intergenic | 40.0% | |
AGAGCTGGATTTCATCAGAA+GGG | - | chr7.3:18952432-18952451 | None:intergenic | 40.0% | |
AGCAGTCCAAAACAGAAGAA+AGG | - | chr7.3:18954646-18954665 | None:intergenic | 40.0% | |
AGGAACACCTATAGATACTG+AGG | - | chr7.3:18953126-18953145 | None:intergenic | 40.0% | |
AGGTAGATAAGCCATGCATT+GGG | + | chr7.3:18954334-18954353 | MS.gene017777:intron | 40.0% | |
ATACAACAGACATGGTTGAC+TGG | - | chr7.3:18954129-18954148 | None:intergenic | 40.0% | |
ATCGAGATCCTAGATAGGAT+CGG | - | chr7.3:18954766-18954785 | None:intergenic | 40.0% | |
ATCGATAGGTAACATGCATC+TGG | - | chr7.3:18956608-18956627 | None:intergenic | 40.0% | |
ATGTTACCTATCGATGCGTT+TGG | + | chr7.3:18956613-18956632 | MS.gene017777:CDS | 40.0% | |
CAAAACCTCAACTTGGTAAG+GGG | + | chr7.3:18953513-18953532 | MS.gene017777:intron | 40.0% | |
CAGGTCAGTCGATATAACTT+GGG | + | chr7.3:18955408-18955427 | MS.gene017777:intron | 40.0% | |
CGATATTATGGACTTCAGAG+GGG | + | chr7.3:18956546-18956565 | MS.gene017777:CDS | 40.0% | |
CGTAAGATGGCTTATGCTAA+AGG | - | chr7.3:18954581-18954600 | None:intergenic | 40.0% | |
CTACAACGTCTCATTCTGAA+TGG | + | chr7.3:18955040-18955059 | MS.gene017777:intron | 40.0% | |
CTCGATATTATGGACTTCAG+AGG | + | chr7.3:18956544-18956563 | MS.gene017777:CDS | 40.0% | |
CTGCAAATGTAGGTTCAGAA+AGG | - | chr7.3:18953146-18953165 | None:intergenic | 40.0% | |
CTGGGATAGTGAAAGTGAAT+GGG | + | chr7.3:18952671-18952690 | MS.gene017777:CDS | 40.0% | |
CTTTCTGAACCTACATTTGC+AGG | + | chr7.3:18953144-18953163 | MS.gene017777:intron | 40.0% | |
CTTTGCTCCATTTATGTCAG+AGG | - | chr7.3:18953492-18953511 | None:intergenic | 40.0% | |
GAAACCTCACAAGTATGCTT+TGG | + | chr7.3:18953630-18953649 | MS.gene017777:intron | 40.0% | |
GAATGGCTTGACTTTGTATC+CGG | + | chr7.3:18955057-18955076 | MS.gene017777:intron | 40.0% | |
GAATGTGGGATTAGAGACTA+TGG | - | chr7.3:18954529-18954548 | None:intergenic | 40.0% | |
GACAAAACCTCAACTTGGTA+AGG | + | chr7.3:18953511-18953530 | MS.gene017777:intron | 40.0% | |
GATATTATGGACTTCAGAGG+GGG | + | chr7.3:18956547-18956566 | MS.gene017777:CDS | 40.0% | |
GATGATTTCCGCCAAATTCA+TGG | + | chr7.3:18952457-18952476 | MS.gene017777:CDS | 40.0% | |
GCAAAGACAAAACCTCAACT+TGG | + | chr7.3:18953506-18953525 | MS.gene017777:intron | 40.0% | |
GCAGTCCAAAACAGAAGAAA+GGG | - | chr7.3:18954645-18954664 | None:intergenic | 40.0% | |
TAGACCAAAGCATACTTGTG+AGG | - | chr7.3:18953637-18953656 | None:intergenic | 40.0% | |
TATGTCAGAGGCTAATGTTG+TGG | - | chr7.3:18953480-18953499 | None:intergenic | 40.0% | |
TCATATAGTCTACCAGACCA+AGG | + | chr7.3:18954314-18954333 | MS.gene017777:intron | 40.0% | |
TCGATAGGTAACATGCATCT+GGG | - | chr7.3:18956607-18956626 | None:intergenic | 40.0% | |
TCGCTGCAACGTAATTCTAA+GGG | + | chr7.3:18956189-18956208 | MS.gene017777:intron | 40.0% | |
TGCATCTGTTTGTAGCATTC+GGG | - | chr7.3:18956520-18956539 | None:intergenic | 40.0% | |
TGGCATGAGTAGCAGTAAAA+CGG | - | chr7.3:18952507-18952526 | None:intergenic | 40.0% | |
TGGGATAGTGAAAGTGAATG+GGG | + | chr7.3:18952672-18952691 | MS.gene017777:CDS | 40.0% | |
TTCGCTGCAACGTAATTCTA+AGG | + | chr7.3:18956188-18956207 | MS.gene017777:intron | 40.0% | |
TTGGATTTCCCTGCAAATGT+AGG | - | chr7.3:18953156-18953175 | None:intergenic | 40.0% | |
! | AAAACTAGGTATCTGGCTCA+AGG | + | chr7.3:18952589-18952608 | MS.gene017777:intron | 40.0% |
! | AATAGAAGTGCAGCACAAGA+TGG | - | chr7.3:18954615-18954634 | None:intergenic | 40.0% |
! | ACACATTTGGGATCACCAAA+AGG | - | chr7.3:18954445-18954464 | None:intergenic | 40.0% |
! | ATCAAAGAGAGAGACCCTTT+TGG | - | chr7.3:18952539-18952558 | None:intergenic | 40.0% |
! | ATGGTAGCATTGGAAGGAAT+AGG | - | chr7.3:18956466-18956485 | None:intergenic | 40.0% |
! | GCTGTTTATACTCTGGGAAA+TGG | + | chr7.3:18955473-18955492 | MS.gene017777:intron | 40.0% |
! | TGTATTGAAGCCAAAGCATC+AGG | + | chr7.3:18955329-18955348 | MS.gene017777:CDS | 40.0% |
! | TGTTTCTGACTGGAATCTGA+TGG | + | chr7.3:18952931-18952950 | MS.gene017777:intron | 40.0% |
! | TTCTGAGCTTTTGTAGACTC+TGG | - | chr7.3:18953328-18953347 | None:intergenic | 40.0% |
! | TTGCATGTTGTGTTTCTGAC+TGG | + | chr7.3:18952921-18952940 | MS.gene017777:intron | 40.0% |
! | TTGGGTTTTGCAGATTTTGG+TGG | + | chr7.3:18952636-18952655 | MS.gene017777:intron | 40.0% |
! | TTTGGTGATCCCAAATGTGT+GGG | + | chr7.3:18954445-18954464 | MS.gene017777:intron | 40.0% |
! | TTTTTACATTGGCCCAAGTC+GGG | - | chr7.3:18955936-18955955 | None:intergenic | 40.0% |
!! | TTTTGGTGATCCCAAATGTG+TGG | + | chr7.3:18954444-18954463 | MS.gene017777:intron | 40.0% |
!!! | ACTCCAGTGTGTTTTGATTC+TGG | + | chr7.3:18955080-18955099 | MS.gene017777:intron | 40.0% |
AAACGGAGACGATCAACATC+AGG | - | chr7.3:18952490-18952509 | None:intergenic | 45.0% | |
AAGATGTGGTGAGTTCACAG+AGG | - | chr7.3:18954670-18954689 | None:intergenic | 45.0% | |
AAGTGAGTAGGGATGCTGTA+GGG | - | chr7.3:18955133-18955152 | None:intergenic | 45.0% | |
AATGGGGTAAGAGACATAGC+AGG | + | chr7.3:18952688-18952707 | MS.gene017777:CDS | 45.0% | |
AATTACGTTGCAGCGAACCT+TGG | - | chr7.3:18956185-18956204 | None:intergenic | 45.0% | |
ATGCATCTGGGTGATTTCAC+CGG | - | chr7.3:18956595-18956614 | None:intergenic | 45.0% | |
ATGGCTTATCTACCTTGGTC+TGG | - | chr7.3:18954329-18954348 | None:intergenic | 45.0% | |
ATTACGTTGCAGCGAACCTT+GGG | - | chr7.3:18956184-18956203 | None:intergenic | 45.0% | |
ATTTCAGAAGGCTTGCAGAG+GGG | + | chr7.3:18954472-18954491 | MS.gene017777:intron | 45.0% | |
ATTTCGTTCAGGCCTGAGAT+CGG | - | chr7.3:18955439-18955458 | None:intergenic | 45.0% | |
CATGCTTACAACCCAATGCA+TGG | - | chr7.3:18954348-18954367 | None:intergenic | 45.0% | |
CCATTCACTTTCACTATCCC+AGG | - | chr7.3:18952673-18952692 | None:intergenic | 45.0% | |
CCTGGGATAGTGAAAGTGAA+TGG | + | chr7.3:18952670-18952689 | MS.gene017777:CDS | 45.0% | |
CGCACAGGAAAAATCAGCAT+TGG | - | chr7.3:18954104-18954123 | None:intergenic | 45.0% | |
CGCTGCAACGTAATTCTAAG+GGG | + | chr7.3:18956190-18956209 | MS.gene017777:intron | 45.0% | |
CTTGAGATGCTCAAAGACAG+AGG | + | chr7.3:18952397-18952416 | MS.gene017777:CDS | 45.0% | |
GAAATCCAGCCCACACATTT+GGG | - | chr7.3:18954457-18954476 | None:intergenic | 45.0% | |
GACGATCAACATCAGGAGAT+TGG | - | chr7.3:18952483-18952502 | None:intergenic | 45.0% | |
GAGAGCTGGATTTCATCAGA+AGG | - | chr7.3:18952433-18952452 | None:intergenic | 45.0% | |
GATGGCTTATGCTAAAGGAC+TGG | - | chr7.3:18954576-18954595 | None:intergenic | 45.0% | |
GATTTCAGAAGGCTTGCAGA+GGG | + | chr7.3:18954471-18954490 | MS.gene017777:intron | 45.0% | |
GCAAGTTAGACAACCATGCT+TGG | + | chr7.3:18953740-18953759 | MS.gene017777:intron | 45.0% | |
GCAGGTCAGTCGATATAACT+TGG | + | chr7.3:18955407-18955426 | MS.gene017777:intron | 45.0% | |
GCATCTGTTTGTAGCATTCG+GGG | - | chr7.3:18956519-18956538 | None:intergenic | 45.0% | |
GGAAATCATCAAGAGAGAGC+TGG | - | chr7.3:18952447-18952466 | None:intergenic | 45.0% | |
GTGAACAGAGAGAGTTTGAC+TGG | + | chr7.3:18952718-18952737 | MS.gene017777:CDS | 45.0% | |
TACAATCCCCGATCCTATCT+AGG | + | chr7.3:18954755-18954774 | MS.gene017777:intron | 45.0% | |
TCAGTCAACACCTGATGCTT+TGG | - | chr7.3:18955342-18955361 | None:intergenic | 45.0% | |
TCGAGATCCTAGATAGGATC+GGG | - | chr7.3:18954765-18954784 | None:intergenic | 45.0% | |
TGAAATCCAGCCCACACATT+TGG | - | chr7.3:18954458-18954477 | None:intergenic | 45.0% | |
! | AAAGAGAGAGACCCTTTTGG+AGG | - | chr7.3:18952536-18952555 | None:intergenic | 45.0% |
! | AAGAGAGAGACCCTTTTGGA+GGG | - | chr7.3:18952535-18952554 | None:intergenic | 45.0% |
! | CAGGAGATTGGCCATGAATT+TGG | - | chr7.3:18952471-18952490 | None:intergenic | 45.0% |
! | GAGATTGGCCATGAATTTGG+CGG | - | chr7.3:18952468-18952487 | None:intergenic | 45.0% |
! | TGCAGTGAATTGGCACCTTT+TGG | + | chr7.3:18954427-18954446 | MS.gene017777:intron | 45.0% |
! | TGCGACCCTTTCTTCTGTTT+TGG | + | chr7.3:18954637-18954656 | MS.gene017777:intron | 45.0% |
!!! | ATAATAAGATAATAATTTTT+CGG | + | chr7.3:18955974-18955993 | MS.gene017777:intron | 5.0% |
!!! | TTTTTTATAATATTTTTTGT+GGG | + | chr7.3:18952876-18952895 | MS.gene017777:intron | 5.0% |
!!! | TTTTTTTATAATATTTTTTG+TGG | + | chr7.3:18952875-18952894 | MS.gene017777:intron | 5.0% |
AAATTTGTCCGGTCCCGACT+TGG | + | chr7.3:18955920-18955939 | MS.gene017777:intron | 50.0% | |
AATTTGTCCGGTCCCGACTT+GGG | + | chr7.3:18955921-18955940 | MS.gene017777:intron | 50.0% | |
ATGCCACTAACCCCTCCAAA+AGG | + | chr7.3:18952521-18952540 | MS.gene017777:CDS | 50.0% | |
CAAGTGAGTAGGGATGCTGT+AGG | - | chr7.3:18955134-18955153 | None:intergenic | 50.0% | |
CGAGATCCTAGATAGGATCG+GGG | - | chr7.3:18954764-18954783 | None:intergenic | 50.0% | |
CTTGCAGAGGGGACAAAATG+TGG | + | chr7.3:18954483-18954502 | MS.gene017777:intron | 50.0% | |
GGATTTCAGAAGGCTTGCAG+AGG | + | chr7.3:18954470-18954489 | MS.gene017777:intron | 50.0% | |
GTTTCCCCCTTACCAAGTTG+AGG | - | chr7.3:18953521-18953540 | None:intergenic | 50.0% | |
TGCCACTAACCCCTCCAAAA+GGG | + | chr7.3:18952522-18952541 | MS.gene017777:CDS | 50.0% | |
!! | AGAGAGAGACCCTTTTGGAG+GGG | - | chr7.3:18952534-18952553 | None:intergenic | 50.0% |
!! | ATGCTAAAGGACTGGTCGCT+GGG | - | chr7.3:18954568-18954587 | None:intergenic | 50.0% |
!! | TATGCTAAAGGACTGGTCGC+TGG | - | chr7.3:18954569-18954588 | None:intergenic | 50.0% |
!! | TGTGTGGGCTGGATTTCAGA+AGG | + | chr7.3:18954460-18954479 | MS.gene017777:intron | 50.0% |
!!! | TGGTGGTTTTTAGTGGGCCT+GGG | + | chr7.3:18952653-18952672 | MS.gene017777:CDS | 50.0% |
!!! | TTGGTGGTTTTTAGTGGGCC+TGG | + | chr7.3:18952652-18952671 | MS.gene017777:CDS | 50.0% |
ACTTGGGAAGAGCCGATCTC+AGG | + | chr7.3:18955424-18955443 | MS.gene017777:intron | 55.0% | |
CTGGGTGATTTCACCGGTGT+AGG | - | chr7.3:18956589-18956608 | None:intergenic | 55.0% | |
GTGAGGTTTCACGCAGCACA+AGG | - | chr7.3:18953620-18953639 | None:intergenic | 55.0% | |
GTGATCCCAAATGTGTGGGC+TGG | + | chr7.3:18954449-18954468 | MS.gene017777:intron | 55.0% | |
TTATGGACTTCAGAGGGGGC+AGG | + | chr7.3:18956551-18956570 | MS.gene017777:CDS | 55.0% | |
!! | GACCCTTTTGGAGGGGTTAG+TGG | - | chr7.3:18952527-18952546 | None:intergenic | 55.0% |
!! | TCGCGCACAGACTCGGTTTT+TGG | - | chr7.3:18953670-18953689 | None:intergenic | 55.0% |
ACATTGGCCCAAGTCGGGAC+CGG | - | chr7.3:18955931-18955950 | None:intergenic | 60.0% | |
CATGGTTGACTGGTGCGCAC+AGG | - | chr7.3:18954119-18954138 | None:intergenic | 60.0% | |
GATTCGCTCGCGCACAGACT+CGG | - | chr7.3:18953677-18953696 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 18952280 | 18956638 | 18952280 | ID=MS.gene017777 |
chr7.3 | mRNA | 18952280 | 18956638 | 18952280 | ID=MS.gene017777.t1;Parent=MS.gene017777 |
chr7.3 | exon | 18952280 | 18952543 | 18952280 | ID=MS.gene017777.t1.exon1;Parent=MS.gene017777.t1 |
chr7.3 | CDS | 18952280 | 18952543 | 18952280 | ID=cds.MS.gene017777.t1;Parent=MS.gene017777.t1 |
chr7.3 | exon | 18952649 | 18952825 | 18952649 | ID=MS.gene017777.t1.exon2;Parent=MS.gene017777.t1 |
chr7.3 | CDS | 18952649 | 18952825 | 18952649 | ID=cds.MS.gene017777.t1;Parent=MS.gene017777.t1 |
chr7.3 | exon | 18955297 | 18955410 | 18955297 | ID=MS.gene017777.t1.exon3;Parent=MS.gene017777.t1 |
chr7.3 | CDS | 18955297 | 18955410 | 18955297 | ID=cds.MS.gene017777.t1;Parent=MS.gene017777.t1 |
chr7.3 | exon | 18956513 | 18956638 | 18956513 | ID=MS.gene017777.t1.exon4;Parent=MS.gene017777.t1 |
chr7.3 | CDS | 18956513 | 18956638 | 18956513 | ID=cds.MS.gene017777.t1;Parent=MS.gene017777.t1 |
Gene Sequence |
Protein sequence |