AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015218

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015218.t1 MTR_5g016220 91.843 331 25 1 1 329 1 331 0.0 622
MS.gene015218.t1 MTR_5g016200 90.547 201 16 1 125 325 2 199 5.20e-132 374
MS.gene015218.t1 MTR_5g016200 79.365 126 22 2 1 124 1 124 2.20e-61 194
MS.gene015218.t1 MTR_5g005470 80.488 205 40 0 125 329 2 206 2.30e-122 350
MS.gene015218.t1 MTR_5g005470 73.228 127 31 2 1 124 1 127 2.00e-57 184
MS.gene015218.t1 MTR_6g042230 61.275 204 78 1 126 329 3 205 1.85e-81 246
MS.gene015218.t1 MTR_6g042230 48.872 133 63 2 1 131 1 130 3.47e-31 117
MS.gene015218.t1 MTR_6g088010 55.825 206 89 1 125 328 2 207 4.19e-79 240
MS.gene015218.t1 MTR_6g088010 47.368 133 68 1 1 131 1 133 5.90e-31 116
MS.gene015218.t1 MTR_6g088020 55.340 206 90 1 125 328 2 207 1.29e-76 234
MS.gene015218.t1 MTR_6g088020 43.609 133 73 1 1 131 1 133 2.09e-26 104
MS.gene015218.t1 MTR_7g090220 37.000 200 123 2 130 328 50 247 3.10e-39 139
MS.gene015218.t1 MTR_3g058520 50.769 65 31 1 253 317 95 158 1.40e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015218.t1 AT3G22320 66.341 205 69 0 125 329 1 205 8.04e-101 295
MS.gene015218.t1 AT3G22320 55.556 126 53 2 2 124 1 126 4.29e-40 140
MS.gene015218.t1 AT5G57980 43.204 206 113 2 128 329 5 210 1.18e-55 180
MS.gene015218.t1 AT5G57980 33.071 127 78 4 5 124 5 131 9.60e-17 78.2
MS.gene015218.t1 AT2G41340 40.394 203 118 2 127 328 17 217 1.09e-44 152
MS.gene015218.t1 AT3G57080 35.023 217 138 2 113 328 7 221 5.76e-40 140
MS.gene015218.t1 AT3G54490 32.338 201 133 2 130 329 35 233 2.50e-30 115
MS.gene015218.t1 AT2G41340 36.313 179 102 3 127 304 17 184 1.19e-28 110
MS.gene015218.t1 AT2G41340 38.650 163 97 2 127 288 17 177 1.55e-28 109
MS.gene015218.t1 AT3G16680 44.156 77 41 1 207 281 2 78 3.00e-14 67.8

Find 84 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATACCGATTTGTTGTCTA+AGG 0.261902 5.4:-9659148 None:intergenic
CAAGAGTTCAAGGAGAAATA+TGG 0.263586 5.4:-9660385 MS.gene015218:CDS
GGATCCCTCACCTGGATTCT+AGG 0.310631 5.4:+9659250 None:intergenic
GATCCTGTTGCAAGATATTA+TGG 0.316385 5.4:-9659232 MS.gene015218:CDS
CCAGATTTATGTCTTCTTCC+CGG 0.347022 5.4:-9660302 MS.gene015218:CDS
TCAGTCAGCACCTGATGTTC+TGG 0.354438 5.4:+9659982 None:intergenic
CTTGCAGGAGGCTGAATTGC+TGG 0.356558 5.4:-9660031 MS.gene015218:intron
ACATGTTAGTAAGGCTGTTC+TGG 0.357577 5.4:+9660194 None:intergenic
ATGAAATAATGAAGCTGTAT+AGG 0.373700 5.4:-9660852 MS.gene015218:CDS
AATCGCCTCCAAATTTCATT+TGG 0.374113 5.4:-9660530 MS.gene015218:CDS
ACGTTTGGTGTAAGTCCTTA+AGG 0.374558 5.4:+9660630 None:intergenic
GTTTGCCTCCAAATTTCATT+TGG 0.384993 5.4:-9660152 MS.gene015218:CDS
AGGTTGGCGTCCACACCTTC+AGG 0.394677 5.4:-9660270 MS.gene015218:CDS
ACTGACCTGAGTTTCTTTAA+CGG 0.397368 5.4:+9659927 None:intergenic
GCATCTCCATCACTGTCTTC+CGG 0.401574 5.4:+9660458 None:intergenic
AAGAGTTCAAGGAGAAATAT+GGG 0.406548 5.4:-9660384 MS.gene015218:CDS
CAAGCTTGTGCCAGAACATC+AGG 0.413166 5.4:-9659992 MS.gene015218:CDS
CATGTCCAAGCAAGAGTTCA+AGG 0.415521 5.4:-9660395 MS.gene015218:CDS
TAATGAAGCTGTATAGGATC+TGG 0.428962 5.4:-9660846 MS.gene015218:CDS
CCGCTTTAGTAAGGCTGGTC+TGG 0.431731 5.4:+9660569 None:intergenic
ACGCCAACCTTGTCTTCCTC+CGG 0.433207 5.4:+9660283 None:intergenic
ATGCCATAATATCTTGCAAC+AGG 0.434750 5.4:+9659229 None:intergenic
ATGAAATATCGAAGCTGTAT+AGG 0.436885 5.4:-9660483 MS.gene015218:CDS
TTTCTCCTTGAACTCTTGCT+TGG 0.437286 5.4:+9660390 None:intergenic
CGCCAACCTTGTCATTCAAC+GGG 0.438451 5.4:+9660659 None:intergenic
TTGCAACAGGATCCCTCACC+TGG 0.449627 5.4:+9659242 None:intergenic
ATTCTCGGAGTTCATACGTT+TGG 0.464348 5.4:+9660240 None:intergenic
GACAAGTTGTCAAGATAATC+CGG 0.473708 5.4:-9659198 MS.gene015218:CDS
ACGGGAAGAACACATAAATC+TGG 0.480965 5.4:+9660677 None:intergenic
GATGGCTCTGTAGACATTCT+CGG 0.488016 5.4:+9660225 None:intergenic
GATGGCTCTGTAGACATTCT+CGG 0.488016 5.4:+9660600 None:intergenic
TTCCTGCAGTCTCACTTGGC+CGG 0.488931 5.4:+9659179 None:intergenic
AGTCCCGTGCCGCTTTAGTA+AGG 0.491272 5.4:+9660560 None:intergenic
AGGTTGGCGTCCATACCTTA+AGG 0.501778 5.4:-9660645 MS.gene015218:CDS
TATCGAAGCTGTATAGGATC+CGG 0.503346 5.4:-9660477 MS.gene015218:CDS
GCTGTTCTGGCAAACGATGA+TGG 0.506683 5.4:+9660207 None:intergenic
GCTGGTCTGGCAAACGATGA+TGG 0.506683 5.4:+9660582 None:intergenic
ATTCTCGGAGTCCATACGTT+TGG 0.507587 5.4:+9660615 None:intergenic
CCGGGAAGAAGACATAAATC+TGG 0.508593 5.4:+9660302 None:intergenic
CGCCAACCTTGTCTTCCTCC+GGG 0.510726 5.4:+9660284 None:intergenic
CCGTGCCGCTTTAGTAAGGC+TGG 0.511251 5.4:+9660564 None:intergenic
TGTTCCATGACATGTTAGTA+AGG 0.511336 5.4:+9660185 None:intergenic
TGGTGTAAGTCCTTAAGGTA+TGG 0.511459 5.4:+9660635 None:intergenic
AACTTCCAAATGAAATTTGG+AGG 0.512170 5.4:+9660147 None:intergenic
AACTTCCAAATGAAATTTGG+AGG 0.512170 5.4:+9660525 None:intergenic
TAGGATCTGGAAGAAGGTGA+TGG 0.515671 5.4:-9660833 MS.gene015218:CDS
CAGCCTTACTAAAGCGGCAC+GGG 0.515723 5.4:-9660563 MS.gene015218:CDS
GGTTAACATACAAGACTTCA+AGG 0.520090 5.4:-9660770 MS.gene015218:CDS
TGATGGAGATGCTTCGTGAC+AGG 0.522662 5.4:-9660447 MS.gene015218:CDS
TGATGGAGATGCTTCGCGAC+AGG 0.523509 5.4:-9660816 MS.gene015218:CDS
TATCTTCCTGCAGTCTCACT+TGG 0.525204 5.4:+9659175 None:intergenic
ATCTCAGCTGCCTAGAATCC+AGG 0.526579 5.4:-9659260 MS.gene015218:intron
GAAATCCTTAGACAACAAAT+CGG 0.526850 5.4:+9659143 None:intergenic
CAAGACTTCAAGGAGAAATA+CGG 0.530318 5.4:-9660760 MS.gene015218:CDS
TTACCTCGTAGAAGATTTCG+AGG 0.547378 5.4:-9660791 MS.gene015218:CDS
GCTGTATAGGATCTGGAAGA+AGG 0.551009 5.4:-9660839 MS.gene015218:CDS
CCAGACCAGCCTTACTAAAG+CGG 0.552518 5.4:-9660569 MS.gene015218:CDS
TTCCCGTTGAATGACAAGGT+TGG 0.562118 5.4:-9660661 MS.gene015218:CDS
TTCCCGGAGGAAGACAAGGT+TGG 0.563167 5.4:-9660286 MS.gene015218:CDS
AACGGTGTATCTCTCAAGTA+CGG 0.566449 5.4:+9659945 None:intergenic
CTTCTTCCCGGAGGAAGACA+AGG 0.574499 5.4:-9660290 MS.gene015218:CDS
AACACATAAATCTGGTCAGA+GGG 0.577483 5.4:+9660685 None:intergenic
ACGTTTGGTGTAAGTCCTGA+AGG 0.581148 5.4:+9660255 None:intergenic
AGATATTATGGCATGAAGCG+TGG 0.584475 5.4:-9659220 MS.gene015218:CDS
ACGCCAACCTTGTCATTCAA+CGG 0.585996 5.4:+9660658 None:intergenic
ACAGCCTTACTAACATGTCA+TGG 0.590641 5.4:-9660189 MS.gene015218:CDS
AAGACATAAATCTGGTCAGA+GGG 0.592633 5.4:+9660310 None:intergenic
ATCCGGCCAAGTGAGACTGC+AGG 0.593487 5.4:-9659181 MS.gene015218:CDS
AAGGACTTACACCAAACGTA+TGG 0.593798 5.4:-9660626 MS.gene015218:CDS
AGCTGCCTAGAATCCAGGTG+AGG 0.614847 5.4:-9659255 MS.gene015218:CDS
TAGGATCCGGAAGACAGTGA+TGG 0.617671 5.4:-9660464 MS.gene015218:CDS
ATACACCGTTAAAGAAACTC+AGG 0.619813 5.4:-9659932 MS.gene015218:intron
GCTGCCTAGAATCCAGGTGA+GGG 0.628324 5.4:-9659254 MS.gene015218:CDS
GTTCTTCCCGTTGAATGACA+AGG 0.631293 5.4:-9660665 MS.gene015218:CDS
GAAGACATAAATCTGGTCAG+AGG 0.641158 5.4:+9660309 None:intergenic
CCAGCCTTACTAAAGCGGCA+CGG 0.649264 5.4:-9660564 MS.gene015218:CDS
GAACACATAAATCTGGTCAG+AGG 0.650182 5.4:+9660684 None:intergenic
TGGTGTAAGTCCTGAAGGTG+TGG 0.659671 5.4:+9660260 None:intergenic
AGAGTTCAAGGAGAAATATG+GGG 0.671436 5.4:-9660383 MS.gene015218:CDS
CGTGACAGGAATTACCTCGT+AGG 0.675089 5.4:-9660433 MS.gene015218:CDS
AGAAGACCTTGTCATCAACA+AGG 0.684606 5.4:-9660347 MS.gene015218:CDS
GATTTATGTCTTCTTCCCGG+AGG 0.710733 5.4:-9660299 MS.gene015218:CDS
TAACCTCAAAATCTCCTACG+AGG 0.757108 5.4:+9660419 None:intergenic
TAACCTCGAAATCTTCTACG+AGG 0.763929 5.4:+9660788 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCACTATATCTAATATTTA+TGG - chr5.4:9660730-9660749 MS.gene015218:CDS 15.0%
!! AAAAACTTCCAAATGAAATT+TGG + chr5.4:9659499-9659518 None:intergenic 20.0%
!! TATATAATAGTATTTCACCT+AGG - chr5.4:9660175-9660194 MS.gene015218:CDS 20.0%
!! TTTATTTGCATGAAATACAA+TGG + chr5.4:9660485-9660504 None:intergenic 20.0%
!!! GATCAATCAATCAAATTTTA+TGG - chr5.4:9659914-9659933 MS.gene015218:intron 20.0%
!!! TATAACTTTACTTTAGAATC+AGG + chr5.4:9660293-9660312 None:intergenic 20.0%
! AGATAATATGCAAACAAGAA+CGG + chr5.4:9660658-9660677 None:intergenic 25.0%
! ATGAAATAATGAAGCTGTAT+AGG - chr5.4:9659166-9659185 MS.gene015218:CDS 25.0%
! GTCAGTTATAAAAAACATTG+TGG - chr5.4:9660108-9660127 MS.gene015218:intron 25.0%
! TCCAAATCTAAATTAGAATC+AGG + chr5.4:9660427-9660446 None:intergenic 25.0%
! TCCTGATTCTAATTTAGATT+TGG - chr5.4:9660423-9660442 MS.gene015218:CDS 25.0%
!! AATTTTATGGTGGTTGTTAA+TGG - chr5.4:9659927-9659946 MS.gene015218:intron 25.0%
!! ATTTCATTTGGAAGTTTTTC+AGG - chr5.4:9659500-9659519 MS.gene015218:intron 25.0%
!! CAATCAATCAAATTTTATGG+TGG - chr5.4:9659917-9659936 MS.gene015218:intron 25.0%
!! GCTTTTGAATCTATTTACAT+TGG - chr5.4:9660579-9660598 MS.gene015218:CDS 25.0%
AAATAGATTCAAAAGCTCTC+AGG + chr5.4:9660575-9660594 None:intergenic 30.0%
AACTAGATTGTACATCATCA+TGG + chr5.4:9660270-9660289 None:intergenic 30.0%
AACTTCCAAATGAAATTTGG+AGG + chr5.4:9659496-9659515 None:intergenic 30.0%
AAGAGTTCAAGGAGAAATAT+GGG - chr5.4:9659634-9659653 MS.gene015218:intron 30.0%
ATGAAATATCGAAGCTGTAT+AGG - chr5.4:9659535-9659554 MS.gene015218:intron 30.0%
CTGCTTTAATCTTTGTCTAA+TGG - chr5.4:9660627-9660646 MS.gene015218:CDS 30.0%
! GGAAGTTTTTCATGTGTTTT+CGG - chr5.4:9659509-9659528 MS.gene015218:intron 30.0%
! TTTACATTGGATAGTTCTAC+TGG - chr5.4:9660592-9660611 MS.gene015218:CDS 30.0%
! TTTTAACCTTTCTTCTTTCC+TGG - chr5.4:9660242-9660261 MS.gene015218:CDS 30.0%
!! CAGAAATTTTTCAAATGCCT+AGG + chr5.4:9660195-9660214 None:intergenic 30.0%
AACACATAAATCTGGTCAGA+GGG + chr5.4:9659336-9659355 None:intergenic 35.0%
AAGACATAAATCTGGTCAGA+GGG + chr5.4:9659711-9659730 None:intergenic 35.0%
AATCGCCTCCAAATTTCATT+TGG - chr5.4:9659488-9659507 MS.gene015218:intron 35.0%
ACTGACCTGAGTTTCTTTAA+CGG + chr5.4:9660094-9660113 None:intergenic 35.0%
AGAGTTCAAGGAGAAATATG+GGG - chr5.4:9659635-9659654 MS.gene015218:intron 35.0%
ATACACCGTTAAAGAAACTC+AGG - chr5.4:9660086-9660105 MS.gene015218:intron 35.0%
ATGCCATAATATCTTGCAAC+AGG + chr5.4:9660792-9660811 None:intergenic 35.0%
ATTGAACCAGGAAAGAAGAA+AGG + chr5.4:9660385-9660404 None:intergenic 35.0%
CAAGACTTCAAGGAGAAATA+CGG - chr5.4:9659258-9659277 MS.gene015218:intron 35.0%
CAAGAGTTCAAGGAGAAATA+TGG - chr5.4:9659633-9659652 MS.gene015218:intron 35.0%
GACAAGTTGTCAAGATAATC+CGG - chr5.4:9660820-9660839 MS.gene015218:CDS 35.0%
GATCCTGTTGCAAGATATTA+TGG - chr5.4:9660786-9660805 MS.gene015218:CDS 35.0%
GGTTAACATACAAGACTTCA+AGG - chr5.4:9659248-9659267 MS.gene015218:CDS 35.0%
GTTTGCCTCCAAATTTCATT+TGG - chr5.4:9659866-9659885 MS.gene015218:intron 35.0%
TAATGAAGCTGTATAGGATC+TGG - chr5.4:9659172-9659191 MS.gene015218:CDS 35.0%
TGTTCCATGACATGTTAGTA+AGG + chr5.4:9659836-9659855 None:intergenic 35.0%
TTGTACATCATCATTGAACC+AGG + chr5.4:9660397-9660416 None:intergenic 35.0%
! AAATTGTACTGACACTGACA+TGG - chr5.4:9660707-9660726 MS.gene015218:CDS 35.0%
! AGTTTTTCATGTGTTTTCGG+AGG - chr5.4:9659512-9659531 MS.gene015218:intron 35.0%
!!! TTTTGGCTTTCTTGATGACA+AGG + chr5.4:9659305-9659324 None:intergenic 35.0%
AACGGTGTATCTCTCAAGTA+CGG + chr5.4:9660076-9660095 None:intergenic 40.0%
AAGGACTTACACCAAACGTA+TGG - chr5.4:9659392-9659411 MS.gene015218:intron 40.0%
ACAGCCTTACTAACATGTCA+TGG - chr5.4:9659829-9659848 MS.gene015218:intron 40.0%
ACATGTTAGTAAGGCTGTTC+TGG + chr5.4:9659827-9659846 None:intergenic 40.0%
ACGGGAAGAACACATAAATC+TGG + chr5.4:9659344-9659363 None:intergenic 40.0%
AGAAGACCTTGTCATCAACA+AGG - chr5.4:9659671-9659690 MS.gene015218:intron 40.0%
AGATATTATGGCATGAAGCG+TGG - chr5.4:9660798-9660817 MS.gene015218:CDS 40.0%
ATGGAACCAGGAAAGAAGAA+AGG + chr5.4:9660251-9660270 None:intergenic 40.0%
ATGGTGGTTGTTAATGGTTG+AGG - chr5.4:9659933-9659952 MS.gene015218:CDS 40.0%
ATTCTCGGAGTTCATACGTT+TGG + chr5.4:9659781-9659800 None:intergenic 40.0%
CCAGATTTATGTCTTCTTCC+CGG - chr5.4:9659716-9659735 MS.gene015218:intron 40.0%
GAACACATAAATCTGGTCAG+AGG + chr5.4:9659337-9659356 None:intergenic 40.0%
GAAGACATAAATCTGGTCAG+AGG + chr5.4:9659712-9659731 None:intergenic 40.0%
TAACCTCAAAATCTCCTACG+AGG + chr5.4:9659602-9659621 None:intergenic 40.0%
TAACCTCGAAATCTTCTACG+AGG + chr5.4:9659233-9659252 None:intergenic 40.0%
TATCGAAGCTGTATAGGATC+CGG - chr5.4:9659541-9659560 MS.gene015218:intron 40.0%
TGGTGTAAGTCCTTAAGGTA+TGG + chr5.4:9659386-9659405 None:intergenic 40.0%
TTACCTCGTAGAAGATTTCG+AGG - chr5.4:9659227-9659246 MS.gene015218:CDS 40.0%
TTGTACATCATCATGGAACC+AGG + chr5.4:9660263-9660282 None:intergenic 40.0%
TTTCTCCTTGAACTCTTGCT+TGG + chr5.4:9659631-9659650 None:intergenic 40.0%
! TTACCTCGTAGGAGATTTTG+AGG - chr5.4:9659596-9659615 MS.gene015218:intron 40.0%
!! ACGTTTGGTGTAAGTCCTTA+AGG + chr5.4:9659391-9659410 None:intergenic 40.0%
!!! GTCAGAGGGATTGTCTTTTT+TGG + chr5.4:9659322-9659341 None:intergenic 40.0%
!!! TTTTGGCCTTGTTGATGACA+AGG + chr5.4:9659680-9659699 None:intergenic 40.0%
ACGCCAACCTTGTCATTCAA+CGG + chr5.4:9659363-9659382 None:intergenic 45.0%
ATTCTCGGAGTCCATACGTT+TGG + chr5.4:9659406-9659425 None:intergenic 45.0%
CATGTCCAAGCAAGAGTTCA+AGG - chr5.4:9659623-9659642 MS.gene015218:intron 45.0%
CCGGGAAGAAGACATAAATC+TGG + chr5.4:9659719-9659738 None:intergenic 45.0%
GATTTATGTCTTCTTCCCGG+AGG - chr5.4:9659719-9659738 MS.gene015218:intron 45.0%
GCACACACACACACTAACAA+CGG + chr5.4:9659962-9659981 None:intergenic 45.0%
GCTGTATAGGATCTGGAAGA+AGG - chr5.4:9659179-9659198 MS.gene015218:CDS 45.0%
GTTCTTCCCGTTGAATGACA+AGG - chr5.4:9659353-9659372 MS.gene015218:intron 45.0%
TAGGATCTGGAAGAAGGTGA+TGG - chr5.4:9659185-9659204 MS.gene015218:CDS 45.0%
TATCTTCCTGCAGTCTCACT+TGG + chr5.4:9660846-9660865 None:intergenic 45.0%
TTCCCGTTGAATGACAAGGT+TGG - chr5.4:9659357-9659376 MS.gene015218:intron 45.0%
! GATGGCTCTGTAGACATTCT+CGG + chr5.4:9659421-9659440 None:intergenic 45.0%
!! ACGTTTGGTGTAAGTCCTGA+AGG + chr5.4:9659766-9659785 None:intergenic 45.0%
AGGTTGGCGTCCATACCTTA+AGG - chr5.4:9659373-9659392 MS.gene015218:intron 50.0%
ATCTCAGCTGCCTAGAATCC+AGG - chr5.4:9660758-9660777 MS.gene015218:CDS 50.0%
CAAGCTTGTGCCAGAACATC+AGG - chr5.4:9660026-9660045 MS.gene015218:CDS 50.0%
CCAGACCAGCCTTACTAAAG+CGG - chr5.4:9659449-9659468 MS.gene015218:intron 50.0%
CGCCAACCTTGTCATTCAAC+GGG + chr5.4:9659362-9659381 None:intergenic 50.0%
CGTGACAGGAATTACCTCGT+AGG - chr5.4:9659585-9659604 MS.gene015218:intron 50.0%
GCATCTCCATCACTGTCTTC+CGG + chr5.4:9659563-9659582 None:intergenic 50.0%
GCTGTTCTGGCAAACGATGA+TGG + chr5.4:9659814-9659833 None:intergenic 50.0%
TAGGATCCGGAAGACAGTGA+TGG - chr5.4:9659554-9659573 MS.gene015218:intron 50.0%
TCAGGACAAGCGAACGACAA+AGG + chr5.4:9660557-9660576 None:intergenic 50.0%
TCAGTCAGCACCTGATGTTC+TGG + chr5.4:9660039-9660058 None:intergenic 50.0%
TGATGGAGATGCTTCGTGAC+AGG - chr5.4:9659571-9659590 MS.gene015218:intron 50.0%
TGGTGTAAGTCCTGAAGGTG+TGG + chr5.4:9659761-9659780 None:intergenic 50.0%
ACGCCAACCTTGTCTTCCTC+CGG + chr5.4:9659738-9659757 None:intergenic 55.0%
AGCTGCCTAGAATCCAGGTG+AGG - chr5.4:9660763-9660782 MS.gene015218:CDS 55.0%
CAGCCTTACTAAAGCGGCAC+GGG - chr5.4:9659455-9659474 MS.gene015218:intron 55.0%
CCAGCCTTACTAAAGCGGCA+CGG - chr5.4:9659454-9659473 MS.gene015218:intron 55.0%
CTTCTTCCCGGAGGAAGACA+AGG - chr5.4:9659728-9659747 MS.gene015218:intron 55.0%
CTTGCAGGAGGCTGAATTGC+TGG - chr5.4:9659987-9660006 MS.gene015218:CDS 55.0%
GCTGCCTAGAATCCAGGTGA+GGG - chr5.4:9660764-9660783 MS.gene015218:CDS 55.0%
GGATCCCTCACCTGGATTCT+AGG + chr5.4:9660771-9660790 None:intergenic 55.0%
TGATGGAGATGCTTCGCGAC+AGG - chr5.4:9659202-9659221 MS.gene015218:CDS 55.0%
TTCCCGGAGGAAGACAAGGT+TGG - chr5.4:9659732-9659751 MS.gene015218:intron 55.0%
TTCCTGCAGTCTCACTTGGC+CGG + chr5.4:9660842-9660861 None:intergenic 55.0%
TTGCAACAGGATCCCTCACC+TGG + chr5.4:9660779-9660798 None:intergenic 55.0%
! CCGCTTTAGTAAGGCTGGTC+TGG + chr5.4:9659452-9659471 None:intergenic 55.0%
! GCTGGTCTGGCAAACGATGA+TGG + chr5.4:9659439-9659458 None:intergenic 55.0%
!! AGTCCCGTGCCGCTTTAGTA+AGG + chr5.4:9659461-9659480 None:intergenic 55.0%
AGGTTGGCGTCCACACCTTC+AGG - chr5.4:9659748-9659767 MS.gene015218:intron 60.0%
ATCCGGCCAAGTGAGACTGC+AGG - chr5.4:9660837-9660856 MS.gene015218:CDS 60.0%
CGCCAACCTTGTCTTCCTCC+GGG + chr5.4:9659737-9659756 None:intergenic 60.0%
!! CCGTGCCGCTTTAGTAAGGC+TGG + chr5.4:9659457-9659476 None:intergenic 60.0%
GTGTGTGTGCGCGCGCTTGC+AGG - chr5.4:9659972-9659991 MS.gene015218:CDS 70.0%
TGTGTGCGCGCGCTTGCAGG+AGG - chr5.4:9659975-9659994 MS.gene015218:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 9659150 9660890 9659150 ID=MS.gene015218
chr5.4 mRNA 9659150 9660890 9659150 ID=MS.gene015218.t1;Parent=MS.gene015218
chr5.4 exon 9660141 9660890 9660141 ID=MS.gene015218.t1.exon1;Parent=MS.gene015218.t1
chr5.4 CDS 9660141 9660890 9660141 ID=cds.MS.gene015218.t1;Parent=MS.gene015218.t1
chr5.4 exon 9659933 9660046 9659933 ID=MS.gene015218.t1.exon2;Parent=MS.gene015218.t1
chr5.4 CDS 9659933 9660046 9659933 ID=cds.MS.gene015218.t1;Parent=MS.gene015218.t1
chr5.4 exon 9659150 9659275 9659150 ID=MS.gene015218.t1.exon3;Parent=MS.gene015218.t1
chr5.4 CDS 9659150 9659275 9659150 ID=cds.MS.gene015218.t1;Parent=MS.gene015218.t1
Gene Sequence

>MS.gene015218

ATGGTGTTTTCGGAGGATGAAATAATGAAGCTGTATAGGATCTGGAAGAAGGTGATGGAGATGCTTCGCGACAGGAATTACCTCGTAGAAGATTTCGAGGTTAACATACAAGACTTCAAGGAGAAATACGGTGAGAATGTGAAGAGAGAAGACCTTGTCATCAAGAAAGCCAAAAAAGACAATCCCTCTGACCAGATTTATGTGTTCTTCCCGTTGAATGACAAGGTTGGCGTCCATACCTTAAGGACTTACACCAAACGTATGGACTCCGAGAATGTCTACAGAGCCATCATCGTTTGCCAGACCAGCCTTACTAAAGCGGCACGGGACTTCTCTGAAATCGCCTCCAAATTTCATTTGGAAGTTTTTCATGTGTTTTCGGAGGATGAAATATCGAAGCTGTATAGGATCCGGAAGACAGTGATGGAGATGCTTCGTGACAGGAATTACCTCGTAGGAGATTTTGAGGTTAACATGTCCAAGCAAGAGTTCAAGGAGAAATATGGGGAGCACATGAAGAGAGAAGACCTTGTCATCAACAAGGCCAAAAAAGACAATCCCTCTGACCAGATTTATGTCTTCTTCCCGGAGGAAGACAAGGTTGGCGTCCACACCTTCAGGACTTACACCAAACGTATGAACTCCGAGAATGTCTACAGAGCCATCATCGTTTGCCAGAACAGCCTTACTAACATGTCATGGAACAGTATCTCTCAGTTTGCCTCCAAATTTCATTTGGAAGTTTTTCAGGTAATTCATCAGTCGATCAATCAATCAAATTTTATGGTGGTTGTTAATGGTTGAGGTAACCGTTGTTAGTGTGTGTGTGTGCGCGCGCTTGCAGGAGGCTGAATTGCTGGTTAATGTAAGATATCACAAGCTTGTGCCAGAACATCAGGTGCTGACTGACAATGAGAAGAATTCCGTACTTGAGAGATACACCGTTAAAGAAACTCAGGTCAGTTATAAAAAACATTGTGGAAATTTTGTGTGTTATAGAATGTGACTAATCTAATGAGTAAAGTTATATAATAGTATTTCACCTAGGCATTTGAAAAATTTCTGCACACGCACAAGTGCTTCGTCTCTAATTTTTAACCTTTCTTCTTTCCTGGTTCCATGATGATGTACAATCTAGTTCCTGATTCTAAAGTAAAGTTATATAATAGTATTTCACCTAGGCATTTGAAAAATTTCTGCACACGCACAAGTGCTTCGTCTCTAATTTTTAACCTTTCTTCTTTCCTGGTTCAATGATGATGTACAATCTAGTTCCTGATTCTAATTTAGATTTGGATGTAATTAAGCATGCATGAAAAGTAAAATTAGCATCCATTGTATTTCATGCAAATAAAACTTCTTTTCATTGTTTATTTCTATAGTGAAAGTTTGTCAGATTTGTCACCTTTGTCGTTCGCTTGTCCTGAGAGCTTTTGAATCTATTTACATTGGATAGTTCTACTGGTTTTAGTGTTTACTGCTTTAATCTTTGTCTAATGGATGTACCGTTCTTGTTTGCATATTATCTCGTATTTGCAATTGTATCATTTTACTACAAAATTGTACTGACACTGACATGGTTCACTATATCTAATATTTATGGTCTGTATCTCAGCTGCCTAGAATCCAGGTGAGGGATCCTGTTGCAAGATATTATGGCATGAAGCGTGGACAAGTTGTCAAGATAATCCGGCCAAGTGAGACTGCAGGAAGATATGTTACATACCGATTTGTTGTCTAA
Protein sequence

>MS.gene015218.t1

MVFSEDEIMKLYRIWKKVMEMLRDRNYLVEDFEVNIQDFKEKYGENVKREDLVIKKAKKDNPSDQIYVFFPLNDKVGVHTLRTYTKRMDSENVYRAIIVCQTSLTKAARDFSEIASKFHLEVFHVFSEDEISKLYRIRKTVMEMLRDRNYLVGDFEVNMSKQEFKEKYGEHMKREDLVINKAKKDNPSDQIYVFFPEEDKVGVHTFRTYTKRMNSENVYRAIIVCQNSLTNMSWNSISQFASKFHLEVFQEAELLVNVRYHKLVPEHQVLTDNEKNSVLERYTVKETQLPRIQVRDPVARYYGMKRGQVVKIIRPSETAGRYVTYRFVV