Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39138.t1 | XP_003625033.1 | 96 | 248 | 6 | 2 | 1 | 244 | 1 | 248 | 1.50E-123 | 452.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39138.t1 | Q9M1J2 | 56.2 | 226 | 95 | 1 | 19 | 244 | 1 | 222 | 4.1e-69 | 262.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39138.t1 | A2Q2Z5 | 96.0 | 248 | 6 | 2 | 1 | 244 | 1 | 248 | 1.1e-123 | 452.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39138 | MS.gene38787 | PPI |
| MS.gene017777 | MS.gene39138 | PPI |
| MS.gene57186 | MS.gene39138 | PPI |
| MS.gene015218 | MS.gene39138 | PPI |
| MS.gene39138 | MS.gene20258 | PPI |
| MS.gene39138 | MS.gene57186 | PPI |
| MS.gene92338 | MS.gene39138 | PPI |
| MS.gene20260 | MS.gene39138 | PPI |
| MS.gene39138 | MS.gene046919 | PPI |
| MS.gene014019 | MS.gene39138 | PPI |
| MS.gene09560 | MS.gene39138 | PPI |
| MS.gene57185 | MS.gene39138 | PPI |
| MS.gene39138 | MS.gene015219 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39138.t1 | MTR_7g090220 | 95.968 | 248 | 6 | 2 | 1 | 244 | 1 | 248 | 1.43e-175 | 483 |
| MS.gene39138.t1 | MTR_6g042230 | 38.693 | 199 | 120 | 2 | 46 | 243 | 7 | 204 | 2.06e-42 | 143 |
| MS.gene39138.t1 | MTR_5g005470 | 39.500 | 200 | 118 | 2 | 46 | 243 | 7 | 205 | 1.31e-41 | 141 |
| MS.gene39138.t1 | MTR_6g088020 | 39.086 | 197 | 115 | 2 | 49 | 241 | 10 | 205 | 9.75e-41 | 139 |
| MS.gene39138.t1 | MTR_6g088010 | 39.267 | 191 | 111 | 2 | 55 | 241 | 16 | 205 | 1.72e-40 | 138 |
| MS.gene39138.t1 | MTR_5g016200 | 37.436 | 195 | 120 | 2 | 46 | 240 | 7 | 199 | 5.37e-39 | 134 |
| MS.gene39138.t1 | MTR_5g016220 | 36.500 | 200 | 124 | 2 | 46 | 243 | 132 | 330 | 2.04e-38 | 136 |
| MS.gene39138.t1 | MTR_3g058520 | 35.211 | 213 | 79 | 7 | 22 | 233 | 5 | 159 | 1.14e-29 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39138.t1 | AT3G57080 | 56.195 | 226 | 95 | 1 | 19 | 244 | 1 | 222 | 7.39e-96 | 280 |
| MS.gene39138.t1 | AT2G41340 | 59.804 | 204 | 82 | 0 | 40 | 243 | 14 | 217 | 4.10e-92 | 270 |
| MS.gene39138.t1 | AT2G41340 | 57.396 | 169 | 72 | 0 | 40 | 208 | 14 | 182 | 1.39e-70 | 215 |
| MS.gene39138.t1 | AT2G41340 | 59.146 | 164 | 67 | 0 | 40 | 203 | 14 | 177 | 2.63e-70 | 214 |
| MS.gene39138.t1 | AT3G54490 | 43.541 | 209 | 118 | 0 | 35 | 243 | 24 | 232 | 2.18e-61 | 192 |
| MS.gene39138.t1 | AT3G22320 | 36.500 | 200 | 124 | 2 | 46 | 243 | 6 | 204 | 1.83e-36 | 128 |
| MS.gene39138.t1 | AT5G57980 | 36.493 | 211 | 121 | 5 | 40 | 241 | 1 | 207 | 2.17e-32 | 117 |
Find 50 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTATATCATACTTCTTC+AGG | 0.242396 | 7.4:-18648289 | None:intergenic |
| GATGCAATTGCTCGATATTA+TGG | 0.243591 | 7.4:+18648940 | MS.gene39138:CDS |
| AGCTCTCTCTTGATGATTTC+CGG | 0.296538 | 7.4:+18645490 | MS.gene39138:CDS |
| AGGGGTATGGCGACTGAAAA+TGG | 0.300588 | 7.4:+18645264 | None:intergenic |
| TGCATCTGTTTGTAGCATTC+GGG | 0.306371 | 7.4:-18648923 | None:intergenic |
| CATCGTTGTTATTGCTGTTT+CGG | 0.317384 | 7.4:-18645304 | None:intergenic |
| TTGCATCTGTTTGTAGCATT+CGG | 0.338079 | 7.4:-18648924 | None:intergenic |
| GATGATTTCCGGCAAATTCA+TGG | 0.357287 | 7.4:+18645501 | MS.gene39138:CDS |
| ATCGATAGGTAACATGCATC+TGG | 0.368224 | 7.4:-18649011 | None:intergenic |
| TCAGTCAACACCTGATGCTT+TGG | 0.372400 | 7.4:-18648248 | None:intergenic |
| TGTTAATCTTCTCTCTTTCA+AGG | 0.372770 | 7.4:+18645832 | MS.gene39138:CDS |
| ATCAAAGAGAGAGACCCTTT+TGG | 0.387197 | 7.4:-18645580 | None:intergenic |
| GAGATTGGCCATGAATTTGC+CGG | 0.401668 | 7.4:-18645509 | None:intergenic |
| TTGTTCACCAAGATGGATAA+TGG | 0.412324 | 7.4:+18645375 | MS.gene39138:CDS |
| TATGCTTCCATTATCCATCT+TGG | 0.423538 | 7.4:-18645382 | None:intergenic |
| ATGCCACTAACCCCTCCAAA+AGG | 0.454191 | 7.4:+18645565 | MS.gene39138:CDS |
| TGTATTGAAGCCAAAGCATC+AGG | 0.467598 | 7.4:+18648238 | MS.gene39138:CDS |
| GACGATCAACATCAGGAGAT+TGG | 0.475030 | 7.4:-18645524 | None:intergenic |
| TAAGTGTTTGTTCACCAAGA+TGG | 0.482415 | 7.4:+18645368 | MS.gene39138:CDS |
| CCAGGGATAGTGAAAGTGAA+TGG | 0.482754 | 7.4:+18645713 | MS.gene39138:CDS |
| CAGGGATAGTGAAAGTGAAT+GGG | 0.483393 | 7.4:+18645714 | MS.gene39138:CDS |
| CCATTCACTTTCACTATCCC+TGG | 0.484269 | 7.4:-18645713 | None:intergenic |
| ACAACGATGGAGATCGAAAA+CGG | 0.484630 | 7.4:+18645318 | MS.gene39138:CDS |
| ACTGAAAATGGAGGACAAAA+CGG | 0.521986 | 7.4:+18645276 | MS.gene39138:CDS |
| GTGAACAGAGACAGTTTGAC+TGG | 0.526473 | 7.4:+18645761 | MS.gene39138:CDS |
| CGTTGTTATTGCTGTTTCGG+TGG | 0.535026 | 7.4:-18645301 | None:intergenic |
| TGGCATGAGTAGCAGTAAAA+CGG | 0.535822 | 7.4:-18645548 | None:intergenic |
| GAGAGCTGGATTTCATCAGA+AGG | 0.539635 | 7.4:-18645474 | None:intergenic |
| AAACGGAGACGATCAACATC+AGG | 0.547032 | 7.4:-18645531 | None:intergenic |
| GTATGATATACAAGAAAAGC+AGG | 0.547642 | 7.4:+18648298 | MS.gene39138:CDS |
| ATGCATCTGGGTGATTTCAC+CGG | 0.552988 | 7.4:-18648998 | None:intergenic |
| ATGTTACCTATCGATGCGTT+TGG | 0.556524 | 7.4:+18649019 | MS.gene39138:CDS |
| TGCCACTAACCCCTCCAAAA+GGG | 0.558127 | 7.4:+18645566 | MS.gene39138:CDS |
| TCGATATTATGGACTTCAGA+GGG | 0.558922 | 7.4:+18648951 | MS.gene39138:CDS |
| GGAAATCATCAAGAGAGAGC+TGG | 0.565999 | 7.4:-18645488 | None:intergenic |
| CTGGGTGATTTCACCGGTGT+AGG | 0.580902 | 7.4:-18648992 | None:intergenic |
| CTCGATATTATGGACTTCAG+AGG | 0.581661 | 7.4:+18648950 | MS.gene39138:CDS |
| ATATCACCAAACGCATCGAT+AGG | 0.584034 | 7.4:-18649025 | None:intergenic |
| TCGATAGGTAACATGCATCT+GGG | 0.601581 | 7.4:-18649010 | None:intergenic |
| ATCTTGGTGAACAAACACTT+AGG | 0.617123 | 7.4:-18645366 | None:intergenic |
| AGAGCTGGATTTCATCAGAA+GGG | 0.630001 | 7.4:-18645473 | None:intergenic |
| CGAAACAGCAATAACAACGA+TGG | 0.637396 | 7.4:+18645305 | MS.gene39138:CDS |
| AATGGGGTAAGAGACATAGC+AGG | 0.645159 | 7.4:+18645731 | MS.gene39138:CDS |
| GCATCTGTTTGTAGCATTCG+GGG | 0.645626 | 7.4:-18648922 | None:intergenic |
| GATATTATGGACTTCAGAGG+GGG | 0.662903 | 7.4:+18648953 | MS.gene39138:CDS |
| CTTGAGATGCTCAAAGACAG+AGG | 0.664708 | 7.4:+18645441 | MS.gene39138:CDS |
| AGGGATAGTGAAAGTGAATG+GGG | 0.668631 | 7.4:+18645715 | MS.gene39138:CDS |
| GTAGTTAAAGTTACCTACAC+CGG | 0.687721 | 7.4:+18648979 | MS.gene39138:CDS |
| CGATATTATGGACTTCAGAG+GGG | 0.705019 | 7.4:+18648952 | MS.gene39138:CDS |
| GGTATGGCGACTGAAAATGG+AGG | 0.771897 | 7.4:+18645267 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTAATATAGAAATAAAT+AGG | + | chr7.4:18647156-18647175 | MS.gene39138:intron | 10.0% |
| !!! | TTATTTTTTATATGAAAACT+AGG | + | chr7.4:18645618-18645637 | MS.gene39138:intron | 10.0% |
| !! | AAACATTGAAAAAAGTTATT+TGG | - | chr7.4:18648651-18648670 | None:intergenic | 15.0% |
| !! | AGAAATAAATAGGTTTAAAT+AGG | + | chr7.4:18647166-18647185 | MS.gene39138:intron | 15.0% |
| !! | AGATATCTAAATATTAATGT+AGG | - | chr7.4:18648079-18648098 | None:intergenic | 15.0% |
| !! | TTATAGGTTTCTTAATATTA+GGG | - | chr7.4:18646405-18646424 | None:intergenic | 15.0% |
| !! | TTTATAGGTTTCTTAATATT+AGG | - | chr7.4:18646406-18646425 | None:intergenic | 15.0% |
| !!! | TATACTTTTTTCTAATGTAA+TGG | - | chr7.4:18646972-18646991 | None:intergenic | 15.0% |
| !! | AAAAAACATTGAGTTAAAAG+AGG | - | chr7.4:18645898-18645917 | None:intergenic | 20.0% |
| !! | AAATCATGTTGAATTATCAA+TGG | - | chr7.4:18648516-18648535 | None:intergenic | 20.0% |
| !! | AACAAGACTTAATATAAGAA+TGG | - | chr7.4:18648891-18648910 | None:intergenic | 20.0% |
| !! | AACGAATATGTAGAAAATAT+AGG | + | chr7.4:18647111-18647130 | MS.gene39138:intron | 20.0% |
| !! | ATAACTAAGAAAATAAGATG+TGG | - | chr7.4:18647593-18647612 | None:intergenic | 20.0% |
| !! | ATCAAAAAGTTGAATTAGTT+AGG | + | chr7.4:18646237-18646256 | MS.gene39138:intron | 20.0% |
| !! | CTTAATATTAGGGTTTAATT+TGG | - | chr7.4:18646395-18646414 | None:intergenic | 20.0% |
| !! | TAATATAAGAATGGTAGTAT+TGG | - | chr7.4:18648882-18648901 | None:intergenic | 20.0% |
| !! | TATGTATCTTTGACATTTAT+AGG | - | chr7.4:18646421-18646440 | None:intergenic | 20.0% |
| !! | TTTCCAACTTCAAAAAAAAT+AGG | - | chr7.4:18646302-18646321 | None:intergenic | 20.0% |
| !!! | AGAGTATTTGGATATTAATT+TGG | - | chr7.4:18647209-18647228 | None:intergenic | 20.0% |
| !!! | ATGAGTTATTAAGTTTTCTA+AGG | + | chr7.4:18648418-18648437 | MS.gene39138:intron | 20.0% |
| !!! | ATTGATAATTCAACATGATT+TGG | + | chr7.4:18648515-18648534 | MS.gene39138:intron | 20.0% |
| !!! | CAATGTTTGAGTTAAATTTT+GGG | + | chr7.4:18648663-18648682 | MS.gene39138:intron | 20.0% |
| !!! | GTTTAAAGAAGTATTATGAT+TGG | - | chr7.4:18646216-18646235 | None:intergenic | 20.0% |
| !!! | TATTTTTGTGTTAATGTCAA+TGG | - | chr7.4:18646458-18646477 | None:intergenic | 20.0% |
| !!! | TCAATGTTTGAGTTAAATTT+TGG | + | chr7.4:18648662-18648681 | MS.gene39138:intron | 20.0% |
| !!! | TTACCTATTTTTTTTGAAGT+TGG | + | chr7.4:18646296-18646315 | MS.gene39138:intron | 20.0% |
| !!! | TTTGTTTTTCTGTTAGAAAA+TGG | + | chr7.4:18646124-18646143 | MS.gene39138:intron | 20.0% |
| ! | AATAACAGCTTAGAGATATT+TGG | + | chr7.4:18646909-18646928 | MS.gene39138:intron | 25.0% |
| ! | ACAAACAAAATATTTCGTTC+AGG | - | chr7.4:18648359-18648378 | None:intergenic | 25.0% |
| ! | ACCTTAAACAAACAATCTTA+AGG | - | chr7.4:18648461-18648480 | None:intergenic | 25.0% |
| ! | ATCAAATTATCAAGTGAGTA+GGG | - | chr7.4:18648053-18648072 | None:intergenic | 25.0% |
| ! | ATTCAACATTAAAGAATGAC+TGG | - | chr7.4:18647840-18647859 | None:intergenic | 25.0% |
| ! | CTTACATGCAAATTTCAATA+AGG | + | chr7.4:18647888-18647907 | MS.gene39138:intron | 25.0% |
| ! | TATCAAATTATCAAGTGAGT+AGG | - | chr7.4:18648054-18648073 | None:intergenic | 25.0% |
| ! | TCATTCTTTAATGTTGAATC+TGG | + | chr7.4:18647841-18647860 | MS.gene39138:intron | 25.0% |
| ! | TCCTTAAGATTGTTTGTTTA+AGG | + | chr7.4:18648457-18648476 | MS.gene39138:intron | 25.0% |
| ! | TTATATGAAAACTAGGTATC+TGG | + | chr7.4:18645625-18645644 | MS.gene39138:intron | 25.0% |
| !! | TACGCATAATTTAAGTTATC+TGG | - | chr7.4:18647713-18647732 | None:intergenic | 25.0% |
| !! | TTGAAGAATGTTTGGAATTA+AGG | + | chr7.4:18646325-18646344 | MS.gene39138:intron | 25.0% |
| !! | TTTCAAGGTTGAAATTTTTC+AGG | + | chr7.4:18645847-18645866 | MS.gene39138:CDS | 25.0% |
| !!! | AAGCACCATTTTTTAAAATG+AGG | - | chr7.4:18647771-18647790 | None:intergenic | 25.0% |
| !!! | GAGAACCTCATTTTAAAAAA+TGG | + | chr7.4:18647763-18647782 | MS.gene39138:intron | 25.0% |
| AAATCAAAGCAGATGAATGT+GGG | - | chr7.4:18647452-18647471 | None:intergenic | 30.0% | |
| AACTACATAACAAAGCAAAG+CGG | + | chr7.4:18646490-18646509 | MS.gene39138:intron | 30.0% | |
| AAGTGCAGGTATTTATTTGA+AGG | + | chr7.4:18647077-18647096 | MS.gene39138:intron | 30.0% | |
| ATTCTCTTTCTATGCATGTA+AGG | + | chr7.4:18648784-18648803 | MS.gene39138:intron | 30.0% | |
| CAGTTTCGATAAAAAGAGAT+AGG | - | chr7.4:18647332-18647351 | None:intergenic | 30.0% | |
| CTCTTTAGTAATTGGTTAGT+AGG | + | chr7.4:18646938-18646957 | MS.gene39138:intron | 30.0% | |
| CTTGTATATCATACTTCTTC+AGG | - | chr7.4:18648292-18648311 | None:intergenic | 30.0% | |
| GGATAGTTCTCTTTAGTAAT+TGG | + | chr7.4:18646930-18646949 | MS.gene39138:intron | 30.0% | |
| GGATTTAAATACAACAGACA+TGG | - | chr7.4:18647275-18647294 | None:intergenic | 30.0% | |
| GTATGATATACAAGAAAAGC+AGG | + | chr7.4:18648298-18648317 | MS.gene39138:CDS | 30.0% | |
| GTTGTATCACTAATCAATGT+GGG | - | chr7.4:18648629-18648648 | None:intergenic | 30.0% | |
| TGTTAATCTTCTCTCTTTCA+AGG | + | chr7.4:18645832-18645851 | MS.gene39138:CDS | 30.0% | |
| TGTTTCAGATTACCTTAAAC+AGG | - | chr7.4:18647048-18647067 | None:intergenic | 30.0% | |
| TTAAAATCGAGATCCTAGAT+AGG | - | chr7.4:18647680-18647699 | None:intergenic | 30.0% | |
| TTATTCAAACATTCCAAGCA+TGG | - | chr7.4:18646894-18646913 | None:intergenic | 30.0% | |
| TTGGCATGTAAGAACAAAAA+TGG | + | chr7.4:18646267-18646286 | MS.gene39138:intron | 30.0% | |
| ! | ACATGAGATTTTCAAATGTG+TGG | + | chr7.4:18647353-18647372 | MS.gene39138:intron | 30.0% |
| ! | AGTTTGAGATGTTTACAAGT+TGG | + | chr7.4:18647920-18647939 | MS.gene39138:intron | 30.0% |
| ! | ATAAGAATGGTAGTATTGGA+AGG | - | chr7.4:18648878-18648897 | None:intergenic | 30.0% |
| ! | CATGAGATTTTCAAATGTGT+GGG | + | chr7.4:18647354-18647373 | MS.gene39138:intron | 30.0% |
| ! | CATGATTTGGATATCTGAAA+TGG | + | chr7.4:18648528-18648547 | MS.gene39138:intron | 30.0% |
| ! | GAAAATGGTAAACATGCTTT+TGG | + | chr7.4:18646139-18646158 | MS.gene39138:intron | 30.0% |
| ! | GGTTAATCAAACAGAGTATT+TGG | - | chr7.4:18647221-18647240 | None:intergenic | 30.0% |
| ! | GTTTGAGATGTTTACAAGTT+GGG | + | chr7.4:18647921-18647940 | MS.gene39138:intron | 30.0% |
| ! | TACATGACTTTTCTCTTACA+AGG | - | chr7.4:18647020-18647039 | None:intergenic | 30.0% |
| ! | TCAGCAACTTGGATTTTATA+AGG | - | chr7.4:18647296-18647315 | None:intergenic | 30.0% |
| ! | TCTTGGTCAACTGTTATTTA+TGG | + | chr7.4:18648487-18648506 | MS.gene39138:intron | 30.0% |
| !! | GAATTAGTTAGGCATTGTTT+TGG | + | chr7.4:18646248-18646267 | MS.gene39138:intron | 30.0% |
| !! | GGAAACTTTTGAAGAATGTT+TGG | + | chr7.4:18646317-18646336 | MS.gene39138:intron | 30.0% |
| !! | TAATGAGTGTTTGAGTTGTT+GGG | + | chr7.4:18645661-18645680 | MS.gene39138:intron | 30.0% |
| !!! | ACGGTCTTATAATTTTGACT+TGG | - | chr7.4:18648699-18648718 | None:intergenic | 30.0% |
| !!! | AGATTTTGGTGGTTTTTAGT+GGG | + | chr7.4:18645690-18645709 | MS.gene39138:intron | 30.0% |
| !!! | TGTTTTGCTGTTTATACTCT+GGG | + | chr7.4:18648376-18648395 | MS.gene39138:intron | 30.0% |
| !!! | TTGTTTAAGGTTTTGAGTCT+TGG | + | chr7.4:18648470-18648489 | MS.gene39138:intron | 30.0% |
| !!! | TTGTTTTGCTGTTTATACTC+TGG | + | chr7.4:18648375-18648394 | MS.gene39138:intron | 30.0% |
| AAACAGACATGATAAAGTGC+AGG | + | chr7.4:18647063-18647082 | MS.gene39138:intron | 35.0% | |
| AAGAATGACTGGTGTATTCA+AGG | - | chr7.4:18647829-18647848 | None:intergenic | 35.0% | |
| ACAAAACCTCAACTTGGTAA+GGG | + | chr7.4:18646552-18646571 | MS.gene39138:intron | 35.0% | |
| ACTGAAAATGGAGGACAAAA+CGG | + | chr7.4:18645276-18645295 | MS.gene39138:CDS | 35.0% | |
| AGAAAAATTGAGTTCAGTGG+TGG | + | chr7.4:18646725-18646744 | MS.gene39138:intron | 35.0% | |
| AGAGTCAACAAGTTTCTTGT+TGG | - | chr7.4:18648118-18648137 | None:intergenic | 35.0% | |
| AGTCAACAAGTTTCTTGTTG+GGG | - | chr7.4:18648116-18648135 | None:intergenic | 35.0% | |
| ATCTTGGTGAACAAACACTT+AGG | - | chr7.4:18645369-18645388 | None:intergenic | 35.0% | |
| CAACTCAAACACTCATTAGT+CGG | - | chr7.4:18645659-18645678 | None:intergenic | 35.0% | |
| CAGTAGTTGCAAAACTGAAA+CGG | - | chr7.4:18648718-18648737 | None:intergenic | 35.0% | |
| CCTAAACTCAAGTTTACACT+AGG | - | chr7.4:18646849-18646868 | None:intergenic | 35.0% | |
| CCTAGTGTAAACTTGAGTTT+AGG | + | chr7.4:18646846-18646865 | MS.gene39138:intron | 35.0% | |
| GAAATCAAAGCAGATGAATG+TGG | - | chr7.4:18647453-18647472 | None:intergenic | 35.0% | |
| GAGAGAAAAATTGAGTTCAG+TGG | + | chr7.4:18646722-18646741 | MS.gene39138:intron | 35.0% | |
| GAGTCAACAAGTTTCTTGTT+GGG | - | chr7.4:18648117-18648136 | None:intergenic | 35.0% | |
| GATGCAATTGCTCGATATTA+TGG | + | chr7.4:18648940-18648959 | MS.gene39138:CDS | 35.0% | |
| GGAAAATATCAGTCGTAAGA+TGG | - | chr7.4:18647503-18647522 | None:intergenic | 35.0% | |
| GGTTGTATCACTAATCAATG+TGG | - | chr7.4:18648630-18648649 | None:intergenic | 35.0% | |
| GTAAGATGGCTTATGCTAAA+GGG | - | chr7.4:18647489-18647508 | None:intergenic | 35.0% | |
| GTAGTTAAAGTTACCTACAC+CGG | + | chr7.4:18648979-18648998 | MS.gene39138:CDS | 35.0% | |
| TAAGTGTTTGTTCACCAAGA+TGG | + | chr7.4:18645368-18645387 | MS.gene39138:CDS | 35.0% | |
| TACAATCCTTGATCCTATCT+AGG | + | chr7.4:18647664-18647683 | MS.gene39138:intron | 35.0% | |
| TATGCTTCCATTATCCATCT+TGG | - | chr7.4:18645385-18645404 | None:intergenic | 35.0% | |
| TCATGTACTTGACCTGTTTA+AGG | + | chr7.4:18647033-18647052 | MS.gene39138:intron | 35.0% | |
| TCGATATTATGGACTTCAGA+GGG | + | chr7.4:18648951-18648970 | MS.gene39138:CDS | 35.0% | |
| TGTACTTGCATGCATTCTTA+GGG | - | chr7.4:18646044-18646063 | None:intergenic | 35.0% | |
| TTCAATTGATGAGTCAGGAA+TGG | + | chr7.4:18646684-18646703 | MS.gene39138:intron | 35.0% | |
| TTGCATCTGTTTGTAGCATT+CGG | - | chr7.4:18648927-18648946 | None:intergenic | 35.0% | |
| TTGTACTTGCATGCATTCTT+AGG | - | chr7.4:18646045-18646064 | None:intergenic | 35.0% | |
| TTGTTCACCAAGATGGATAA+TGG | + | chr7.4:18645375-18645394 | MS.gene39138:CDS | 35.0% | |
| TTTCTGAACCTACATTTGCA+GGG | + | chr7.4:18646186-18646205 | MS.gene39138:intron | 35.0% | |
| TTTGGATCCTCAGTATCTAT+AGG | + | chr7.4:18646157-18646176 | MS.gene39138:intron | 35.0% | |
| ! | ACATTAGCCTCTGACATAAA+TGG | + | chr7.4:18646522-18646541 | MS.gene39138:intron | 35.0% |
| ! | ATGACTTTTCTCTTACAAGG+TGG | - | chr7.4:18647017-18647036 | None:intergenic | 35.0% |
| ! | ATGGTAGTATTGGAAGGAAT+AGG | - | chr7.4:18648872-18648891 | None:intergenic | 35.0% |
| ! | CAATGACATTTTCAGCAACT+TGG | - | chr7.4:18647307-18647326 | None:intergenic | 35.0% |
| ! | TACAAGGTGGGATTTTCAAA+TGG | - | chr7.4:18647004-18647023 | None:intergenic | 35.0% |
| ! | TGACTTTTCTCTTACAAGGT+GGG | - | chr7.4:18647016-18647035 | None:intergenic | 35.0% |
| ! | TTGTTGGGTTTTGCAGATTT+TGG | + | chr7.4:18645676-18645695 | MS.gene39138:intron | 35.0% |
| !! | CAGATTTTGGTGGTTTTTAG+TGG | + | chr7.4:18645689-18645708 | MS.gene39138:intron | 35.0% |
| !! | CATCGTTGTTATTGCTGTTT+CGG | - | chr7.4:18645307-18645326 | None:intergenic | 35.0% |
| !! | CTAATGAGTGTTTGAGTTGT+TGG | + | chr7.4:18645660-18645679 | MS.gene39138:intron | 35.0% |
| AAAACCTCAACTTGGTAAGG+GGG | + | chr7.4:18646554-18646573 | MS.gene39138:intron | 40.0% | |
| AATCAAAACACACTGGAGTC+CGG | - | chr7.4:18647988-18648007 | None:intergenic | 40.0% | |
| AATCAATGTGGGATCTCAAC+AGG | - | chr7.4:18648618-18648637 | None:intergenic | 40.0% | |
| ACAACGATGGAGATCGAAAA+CGG | + | chr7.4:18645318-18645337 | MS.gene39138:CDS | 40.0% | |
| AGACCAGAATCAAAACACAC+TGG | - | chr7.4:18647995-18648014 | None:intergenic | 40.0% | |
| AGAGCTGGATTTCATCAGAA+GGG | - | chr7.4:18645476-18645495 | None:intergenic | 40.0% | |
| AGCAGTCCAAAACAGAAGAA+AGG | - | chr7.4:18647555-18647574 | None:intergenic | 40.0% | |
| AGGAACACCTATAGATACTG+AGG | - | chr7.4:18646167-18646186 | None:intergenic | 40.0% | |
| AGGGATAGTGAAAGTGAATG+GGG | + | chr7.4:18645715-18645734 | MS.gene39138:CDS | 40.0% | |
| ATACAACAGACATGGTTGAC+TGG | - | chr7.4:18647267-18647286 | None:intergenic | 40.0% | |
| ATCGATAGGTAACATGCATC+TGG | - | chr7.4:18649014-18649033 | None:intergenic | 40.0% | |
| ATGTTACCTATCGATGCGTT+TGG | + | chr7.4:18649019-18649038 | MS.gene39138:CDS | 40.0% | |
| ATTTCAGAAGGCTTGCAAAG+GGG | + | chr7.4:18647381-18647400 | MS.gene39138:intron | 40.0% | |
| CAAAACCTCAACTTGGTAAG+GGG | + | chr7.4:18646553-18646572 | MS.gene39138:intron | 40.0% | |
| CAGCATTCAATTGATGAGTC+AGG | + | chr7.4:18646679-18646698 | MS.gene39138:intron | 40.0% | |
| CAGGGATAGTGAAAGTGAAT+GGG | + | chr7.4:18645714-18645733 | MS.gene39138:CDS | 40.0% | |
| CAGGTCAGTCGATATAACTT+GGG | + | chr7.4:18648317-18648336 | MS.gene39138:intron | 40.0% | |
| CGAAACAGCAATAACAACGA+TGG | + | chr7.4:18645305-18645324 | MS.gene39138:CDS | 40.0% | |
| CGATATTATGGACTTCAGAG+GGG | + | chr7.4:18648952-18648971 | MS.gene39138:CDS | 40.0% | |
| CGTAAGATGGCTTATGCTAA+AGG | - | chr7.4:18647490-18647509 | None:intergenic | 40.0% | |
| CTACAACGTCTCATTCTGAA+TGG | + | chr7.4:18647949-18647968 | MS.gene39138:intron | 40.0% | |
| CTCGATATTATGGACTTCAG+AGG | + | chr7.4:18648950-18648969 | MS.gene39138:CDS | 40.0% | |
| CTGCAAATGTAGGTTCAGAA+AGG | - | chr7.4:18646187-18646206 | None:intergenic | 40.0% | |
| CTTTCTGAACCTACATTTGC+AGG | + | chr7.4:18646185-18646204 | MS.gene39138:intron | 40.0% | |
| CTTTGCTCCATTTATGTCAG+AGG | - | chr7.4:18646532-18646551 | None:intergenic | 40.0% | |
| GAAACCTCGCAAGTATACTT+TGG | + | chr7.4:18646768-18646787 | MS.gene39138:intron | 40.0% | |
| GAATGGCTTGACTTTGTATC+CGG | + | chr7.4:18647966-18647985 | MS.gene39138:intron | 40.0% | |
| GAATGTGGGATTAGAGACTA+TGG | - | chr7.4:18647438-18647457 | None:intergenic | 40.0% | |
| GACAAAACCTCAACTTGGTA+AGG | + | chr7.4:18646551-18646570 | MS.gene39138:intron | 40.0% | |
| GATATTATGGACTTCAGAGG+GGG | + | chr7.4:18648953-18648972 | MS.gene39138:CDS | 40.0% | |
| GATGATTTCCGGCAAATTCA+TGG | + | chr7.4:18645501-18645520 | MS.gene39138:CDS | 40.0% | |
| GATTTCAGAAGGCTTGCAAA+GGG | + | chr7.4:18647380-18647399 | MS.gene39138:intron | 40.0% | |
| GCAAAGACAAAACCTCAACT+TGG | + | chr7.4:18646546-18646565 | MS.gene39138:intron | 40.0% | |
| GCAGTCCAAAACAGAAGAAA+GGG | - | chr7.4:18647554-18647573 | None:intergenic | 40.0% | |
| TAGACCAAAGTATACTTGCG+AGG | - | chr7.4:18646775-18646794 | None:intergenic | 40.0% | |
| TATGTCAGAGGCTAATGTTG+TGG | - | chr7.4:18646520-18646539 | None:intergenic | 40.0% | |
| TCGATAGGTAACATGCATCT+GGG | - | chr7.4:18649013-18649032 | None:intergenic | 40.0% | |
| TGCACAGGAAAAATCAGCAT+TGG | - | chr7.4:18647242-18647261 | None:intergenic | 40.0% | |
| TGCATCTGTTTGTAGCATTC+GGG | - | chr7.4:18648926-18648945 | None:intergenic | 40.0% | |
| TGGCATGAGTAGCAGTAAAA+CGG | - | chr7.4:18645551-18645570 | None:intergenic | 40.0% | |
| TTGGATTTCCCTGCAAATGT+AGG | - | chr7.4:18646197-18646216 | None:intergenic | 40.0% | |
| ! | AAAACTAGGTATCTGGCTCA+AGG | + | chr7.4:18645632-18645651 | MS.gene39138:intron | 40.0% |
| ! | AATAGAAGTGCAGCACAAGA+TGG | - | chr7.4:18647524-18647543 | None:intergenic | 40.0% |
| ! | AGATTTTCAAATGTGTGGGC+TGG | + | chr7.4:18647358-18647377 | MS.gene39138:intron | 40.0% |
| ! | AGCTCTCTCTTGATGATTTC+CGG | + | chr7.4:18645490-18645509 | MS.gene39138:CDS | 40.0% |
| ! | ATCAAAGAGAGAGACCCTTT+TGG | - | chr7.4:18645583-18645602 | None:intergenic | 40.0% |
| ! | GCTGTTTATACTCTGGGAAA+TGG | + | chr7.4:18648382-18648401 | MS.gene39138:intron | 40.0% |
| ! | TGTATTGAAGCCAAAGCATC+AGG | + | chr7.4:18648238-18648257 | MS.gene39138:CDS | 40.0% |
| ! | TGTTTCTGACTGGAATCTGA+TGG | + | chr7.4:18645972-18645991 | MS.gene39138:intron | 40.0% |
| ! | TTCTGAGCTTTTGTAGACTC+TGG | - | chr7.4:18646368-18646387 | None:intergenic | 40.0% |
| ! | TTGCATGTTGTGTTTCTGAC+TGG | + | chr7.4:18645962-18645981 | MS.gene39138:intron | 40.0% |
| ! | TTGGGTTTTGCAGATTTTGG+TGG | + | chr7.4:18645679-18645698 | MS.gene39138:intron | 40.0% |
| !!! | ACTCCAGTGTGTTTTGATTC+TGG | + | chr7.4:18647989-18648008 | MS.gene39138:intron | 40.0% |
| AAACGGAGACGATCAACATC+AGG | - | chr7.4:18645534-18645553 | None:intergenic | 45.0% | |
| AAGATGTGGTGAGTTCACAG+AGG | - | chr7.4:18647579-18647598 | None:intergenic | 45.0% | |
| AAGTGAGTAGGGATGCTGTA+GGG | - | chr7.4:18648042-18648061 | None:intergenic | 45.0% | |
| AATGGGGTAAGAGACATAGC+AGG | + | chr7.4:18645731-18645750 | MS.gene39138:CDS | 45.0% | |
| ATGCATCTGGGTGATTTCAC+CGG | - | chr7.4:18649001-18649020 | None:intergenic | 45.0% | |
| ATTTCGTTCAGGCCTGAGAT+CGG | - | chr7.4:18648348-18648367 | None:intergenic | 45.0% | |
| CCAGGGATAGTGAAAGTGAA+TGG | + | chr7.4:18645713-18645732 | MS.gene39138:CDS | 45.0% | |
| CCATTCACTTTCACTATCCC+TGG | - | chr7.4:18645716-18645735 | None:intergenic | 45.0% | |
| CGAGATCCTAGATAGGATCA+AGG | - | chr7.4:18647673-18647692 | None:intergenic | 45.0% | |
| CTTGAGATGCTCAAAGACAG+AGG | + | chr7.4:18645441-18645460 | MS.gene39138:CDS | 45.0% | |
| CTTGCAAAGGGGACAAAATG+TGG | + | chr7.4:18647392-18647411 | MS.gene39138:intron | 45.0% | |
| GACGATCAACATCAGGAGAT+TGG | - | chr7.4:18645527-18645546 | None:intergenic | 45.0% | |
| GAGAGCTGGATTTCATCAGA+AGG | - | chr7.4:18645477-18645496 | None:intergenic | 45.0% | |
| GCAAGTTAGACAACCATGCT+TGG | + | chr7.4:18646878-18646897 | MS.gene39138:intron | 45.0% | |
| GCAGGTCAGTCGATATAACT+TGG | + | chr7.4:18648316-18648335 | MS.gene39138:intron | 45.0% | |
| GCATCTGTTTGTAGCATTCG+GGG | - | chr7.4:18648925-18648944 | None:intergenic | 45.0% | |
| GGAAATCATCAAGAGAGAGC+TGG | - | chr7.4:18645491-18645510 | None:intergenic | 45.0% | |
| GGATTTCAGAAGGCTTGCAA+AGG | + | chr7.4:18647379-18647398 | MS.gene39138:intron | 45.0% | |
| GTGAACAGAGACAGTTTGAC+TGG | + | chr7.4:18645761-18645780 | MS.gene39138:CDS | 45.0% | |
| TCAGTCAACACCTGATGCTT+TGG | - | chr7.4:18648251-18648270 | None:intergenic | 45.0% | |
| ! | AAAGAGAGAGACCCTTTTGG+AGG | - | chr7.4:18645580-18645599 | None:intergenic | 45.0% |
| ! | AAGAGAGAGACCCTTTTGGA+GGG | - | chr7.4:18645579-18645598 | None:intergenic | 45.0% |
| ! | GAGATTGGCCATGAATTTGC+CGG | - | chr7.4:18645512-18645531 | None:intergenic | 45.0% |
| ! | TGCGACCCTTTCTTCTGTTT+TGG | + | chr7.4:18647546-18647565 | MS.gene39138:intron | 45.0% |
| !! | CGTTGTTATTGCTGTTTCGG+TGG | - | chr7.4:18645304-18645323 | None:intergenic | 45.0% |
| !!! | TTTTTTATAATATTTTTTGT+GGG | + | chr7.4:18645917-18645936 | MS.gene39138:intron | 5.0% |
| !!! | TTTTTTTATAATATTTTTTG+TGG | + | chr7.4:18645916-18645935 | MS.gene39138:intron | 5.0% |
| ATGCCACTAACCCCTCCAAA+AGG | + | chr7.4:18645565-18645584 | MS.gene39138:CDS | 50.0% | |
| CAAGTGAGTAGGGATGCTGT+AGG | - | chr7.4:18648043-18648062 | None:intergenic | 50.0% | |
| GATGGCTTATGCTAAAGGGC+TGG | - | chr7.4:18647485-18647504 | None:intergenic | 50.0% | |
| GTTTCCCCCTTACCAAGTTG+AGG | - | chr7.4:18646561-18646580 | None:intergenic | 50.0% | |
| TGCCACTAACCCCTCCAAAA+GGG | + | chr7.4:18645566-18645585 | MS.gene39138:CDS | 50.0% | |
| !! | AGAGAGAGACCCTTTTGGAG+GGG | - | chr7.4:18645578-18645597 | None:intergenic | 50.0% |
| !! | TGTGTGGGCTGGATTTCAGA+AGG | + | chr7.4:18647369-18647388 | MS.gene39138:intron | 50.0% |
| !!! | TGGTGGTTTTTAGTGGGCCA+GGG | + | chr7.4:18645696-18645715 | MS.gene39138:CDS | 50.0% |
| !!! | TTGGTGGTTTTTAGTGGGCC+AGG | + | chr7.4:18645695-18645714 | MS.gene39138:CDS | 50.0% |
| ACTTGGGAAGAGCCGATCTC+AGG | + | chr7.4:18648333-18648352 | MS.gene39138:intron | 55.0% | |
| CATGGTTGACTGGTGTGCAC+AGG | - | chr7.4:18647257-18647276 | None:intergenic | 55.0% | |
| CTGGGTGATTTCACCGGTGT+AGG | - | chr7.4:18648995-18649014 | None:intergenic | 55.0% | |
| GCGAGGTTTCATGCAGCACA+AGG | - | chr7.4:18646758-18646777 | None:intergenic | 55.0% | |
| TTATGGACTTCAGAGGGGGC+AGG | + | chr7.4:18648957-18648976 | MS.gene39138:CDS | 55.0% | |
| !! | ATGCTAAAGGGCTGGTCGCT+GGG | - | chr7.4:18647477-18647496 | None:intergenic | 55.0% |
| !! | GACCCTTTTGGAGGGGTTAG+TGG | - | chr7.4:18645571-18645590 | None:intergenic | 55.0% |
| !! | TATGCTAAAGGGCTGGTCGC+TGG | - | chr7.4:18647478-18647497 | None:intergenic | 55.0% |
| !! | TCGCGCACAGACTCGGTTTT+TGG | - | chr7.4:18646808-18646827 | None:intergenic | 55.0% |
| GATTCGCTCGCGCACAGACT+CGG | - | chr7.4:18646815-18646834 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 18645270 | 18649044 | 18645270 | ID=MS.gene39138 |
| chr7.4 | mRNA | 18645270 | 18649044 | 18645270 | ID=MS.gene39138.t1;Parent=MS.gene39138 |
| chr7.4 | exon | 18645270 | 18645587 | 18645270 | ID=MS.gene39138.t1.exon1;Parent=MS.gene39138.t1 |
| chr7.4 | CDS | 18645270 | 18645587 | 18645270 | ID=cds.MS.gene39138.t1;Parent=MS.gene39138.t1 |
| chr7.4 | exon | 18645692 | 18645868 | 18645692 | ID=MS.gene39138.t1.exon2;Parent=MS.gene39138.t1 |
| chr7.4 | CDS | 18645692 | 18645868 | 18645692 | ID=cds.MS.gene39138.t1;Parent=MS.gene39138.t1 |
| chr7.4 | exon | 18648206 | 18648319 | 18648206 | ID=MS.gene39138.t1.exon3;Parent=MS.gene39138.t1 |
| chr7.4 | CDS | 18648206 | 18648319 | 18648206 | ID=cds.MS.gene39138.t1;Parent=MS.gene39138.t1 |
| chr7.4 | exon | 18648919 | 18649044 | 18648919 | ID=MS.gene39138.t1.exon4;Parent=MS.gene39138.t1 |
| chr7.4 | CDS | 18648919 | 18649044 | 18648919 | ID=cds.MS.gene39138.t1;Parent=MS.gene39138.t1 |
| Gene Sequence |
| Protein sequence |
