AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015219

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015219.t1 MTR_5g016220 90.732 205 19 0 2 206 127 331 1.15e-135 383
MS.gene015219.t1 MTR_5g016220 81.890 127 22 1 1 127 1 126 1.56e-68 213
MS.gene015219.t1 MTR_5g016200 90.099 202 17 1 1 202 1 199 1.59e-131 367
MS.gene015219.t1 MTR_5g005470 83.981 206 33 0 1 206 1 206 5.91e-129 361
MS.gene015219.t1 MTR_6g042230 62.621 206 76 1 1 206 1 205 9.93e-86 252
MS.gene015219.t1 MTR_6g088010 58.937 207 83 1 1 205 1 207 4.17e-85 250
MS.gene015219.t1 MTR_6g088020 58.173 208 83 2 1 205 1 207 1.76e-80 239
MS.gene015219.t1 MTR_7g090220 40.000 195 114 2 12 205 55 247 6.89e-44 147
MS.gene015219.t1 MTR_3g058520 33.508 191 72 5 4 194 23 158 2.99e-17 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015219.t1 AT3G22320 69.268 205 63 0 2 206 1 205 9.97e-106 303
MS.gene015219.t1 AT5G57980 45.631 206 108 2 5 206 5 210 1.02e-59 186
MS.gene015219.t1 AT2G41340 39.901 203 119 2 4 205 17 217 2.73e-44 147
MS.gene015219.t1 AT3G57080 35.294 204 129 2 3 205 20 221 7.68e-38 130
MS.gene015219.t1 AT3G54490 32.836 201 132 2 7 206 35 233 7.01e-32 115
MS.gene015219.t1 AT2G41340 35.754 179 103 3 4 181 17 184 1.19e-28 106
MS.gene015219.t1 AT2G41340 38.037 163 98 2 4 165 17 177 3.12e-28 105
MS.gene015219.t1 AT3G16680 46.753 77 39 1 84 158 2 78 3.06e-16 71.2

Find 55 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATACCGATTTGTTGTATA+AGG 0.225416 5.4:-9646015 None:intergenic
GAAGAGTTCAAGGAGAAGTA+TGG 0.258088 5.4:-9648114 MS.gene015219:CDS
GATCCAGTTGCAAGATATTA+TGG 0.330603 5.4:-9646099 MS.gene015219:CDS
GGATCCGTCACCTGGATTCT+AGG 0.338245 5.4:+9646117 None:intergenic
TCAGTCAGCACCTGATGTTT+TGG 0.346224 5.4:+9647719 None:intergenic
CCAGATTTATGTCTTCTTCC+CGG 0.347022 5.4:-9648031 MS.gene015219:CDS
ATGAAATAACGAAGCTGTAT+AGG 0.377457 5.4:-9648212 MS.gene015219:CDS
TATTGCCTCCAAATTTCATT+TGG 0.382348 5.4:-9647881 MS.gene015219:CDS
AGGTTGGCGTCCACACCTTC+AGG 0.394677 5.4:-9647999 MS.gene015219:CDS
CCGTGCCTGGTTAGTAAGTC+TGG 0.396665 5.4:+9647918 None:intergenic
ACTGACCTGAGTTTCTTTAA+CGG 0.397368 5.4:+9647664 None:intergenic
GCATCTCCATCACCGTCTTC+CGG 0.402383 5.4:+9648187 None:intergenic
ATGCCATAATATCTTGCAAC+TGG 0.416357 5.4:+9646096 None:intergenic
AACGGTGTATCTCTCGAGTA+AGG 0.416794 5.4:+9647682 None:intergenic
ATTCTCGGAGTTCATGCGTT+TGG 0.430411 5.4:+9647969 None:intergenic
ACGCCAACCTTGTCTTCCTC+CGG 0.433207 5.4:+9648012 None:intergenic
TTGCAACTGGATCCGTCACC+TGG 0.443610 5.4:+9646109 None:intergenic
AAGAGTTCAAGGAGAAGTAT+GGG 0.443886 5.4:-9648113 MS.gene015219:CDS
CAGAGATACTGTTCCGTGCC+TGG 0.445363 5.4:+9647905 None:intergenic
GACAAGTTGTTAAGATAATC+CGG 0.451366 5.4:-9646065 MS.gene015219:CDS
TATGTCGAAAGAAGAGTTCA+AGG 0.467664 5.4:-9648124 MS.gene015219:CDS
CCTGGTTAGTAAGTCTGGTC+TGG 0.481667 5.4:+9647923 None:intergenic
TTCCTGCAGTCTCACTTGGC+CGG 0.488931 5.4:+9646046 None:intergenic
AAAATCCTTATACAACAAAT+CGG 0.490397 5.4:+9646010 None:intergenic
TAACGAAGCTGTATAGGATC+CGG 0.497065 5.4:-9648206 MS.gene015219:CDS
GATGGCCCTGTAGACATTCT+CGG 0.502591 5.4:+9647954 None:intergenic
CCGGGAAGAAGACATAAATC+TGG 0.508593 5.4:+9648031 None:intergenic
CGCCAACCTTGTCTTCCTCC+GGG 0.510726 5.4:+9648013 None:intergenic
AACTTCCAAATGAAATTTGG+AGG 0.512170 5.4:+9647876 None:intergenic
TGTGCTTGTGCCAAAACATC+AGG 0.516165 5.4:-9647729 MS.gene015219:CDS
TCTGGTCTGGCAAACGATGA+TGG 0.521258 5.4:+9647936 None:intergenic
TATCTTCCTGCAGTCTCACT+TGG 0.525204 5.4:+9646042 None:intergenic
TGAACTCCGAGAATGTCTAC+AGG 0.539472 5.4:-9647960 MS.gene015219:CDS
GCTGTATAGGATCCGGAAGA+CGG 0.548026 5.4:-9648199 MS.gene015219:CDS
TTCTCAGCTACCTAGAATCC+AGG 0.559875 5.4:-9646127 MS.gene015219:intron
TTCCCGGAGGAAGACAAGGT+TGG 0.563167 5.4:-9648015 MS.gene015219:CDS
TAGGATCCGGAAGACGGTGA+TGG 0.567579 5.4:-9648193 MS.gene015219:CDS
TGATGGAGATGCTTCATGAC+AGG 0.572852 5.4:-9648176 MS.gene015219:CDS
CTTCTTCCCGGAGGAAGACA+AGG 0.574499 5.4:-9648019 MS.gene015219:CDS
AGAGTTCAAGGAGAAGTATG+GGG 0.574581 5.4:-9648112 MS.gene015219:CDS
AGATATTATGGCATGAAGCG+TGG 0.584475 5.4:-9646087 MS.gene015219:CDS
AAGACATAAATCTGGTCAGA+GGG 0.592633 5.4:+9648039 None:intergenic
ATCCGGCCAAGTGAGACTGC+AGG 0.593487 5.4:-9646048 MS.gene015219:CDS
CCAGACCAGACTTACTAACC+AGG 0.596564 5.4:-9647923 MS.gene015219:CDS
GCGTTTGGTGTAAGTCCTGA+AGG 0.608662 5.4:+9647984 None:intergenic
ATACACCGTTAAAGAAACTC+AGG 0.619813 5.4:-9647669 MS.gene015219:intron
CATGACAGGAATTACCTCGT+TGG 0.635368 5.4:-9648162 MS.gene015219:CDS
GAAGACATAAATCTGGTCAG+AGG 0.641158 5.4:+9648038 None:intergenic
CCAGACTTACTAACCAGGCA+CGG 0.642546 5.4:-9647918 MS.gene015219:CDS
GCTACCTAGAATCCAGGTGA+CGG 0.654774 5.4:-9646121 MS.gene015219:CDS
TGGTGTAAGTCCTGAAGGTG+TGG 0.659671 5.4:+9647989 None:intergenic
AGAAGACCTTGTCATCAACA+AGG 0.684606 5.4:-9648076 MS.gene015219:CDS
GAACTCCGAGAATGTCTACA+GGG 0.693592 5.4:-9647959 MS.gene015219:CDS
GATTTATGTCTTCTTCCCGG+AGG 0.710733 5.4:-9648028 MS.gene015219:CDS
TAACCTCAAAATCTCCAACG+AGG 0.783111 5.4:+9648148 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTTACAAAATAAATAAA+TGG + chr5.4:9647613-9647632 None:intergenic 10.0%
!! AAGACAATTATTATCATATA+AGG - chr5.4:9647462-9647481 MS.gene015219:intron 15.0%
!! AGACAATTATTATCATATAA+GGG - chr5.4:9647463-9647482 MS.gene015219:intron 15.0%
!! TTCACTATATCTAATATTTA+TGG - chr5.4:9648090-9648109 MS.gene015219:CDS 15.0%
!! AAAAACTTCCAAATGAAATT+TGG + chr5.4:9646375-9646394 None:intergenic 20.0%
!! AAGTGAAAATGTAAACTATT+AGG - chr5.4:9646694-9646713 MS.gene015219:intron 20.0%
!! ATTGTCTTAAATAATCACTT+GGG - chr5.4:9647031-9647050 MS.gene015219:intron 20.0%
!! GACAATTATTATCATATAAG+GGG - chr5.4:9647464-9647483 MS.gene015219:intron 20.0%
!! TACAAAATAAATAAATGGCT+GGG + chr5.4:9647608-9647627 None:intergenic 20.0%
!! TATATAATAGTATTTCACCT+AGG - chr5.4:9647632-9647651 MS.gene015219:intron 20.0%
!! TTACAAAATAAATAAATGGC+TGG + chr5.4:9647609-9647628 None:intergenic 20.0%
!! TTTATTTGCATGAAATACAA+TGG + chr5.4:9647810-9647829 None:intergenic 20.0%
! AAGAAAATCAATGAAAGAAC+TGG + chr5.4:9647009-9647028 None:intergenic 25.0%
! ATACAATATGCAAACAAGAA+CGG + chr5.4:9647981-9648000 None:intergenic 25.0%
! GATTGTCTTAAATAATCACT+TGG - chr5.4:9647030-9647049 MS.gene015219:intron 25.0%
! GGTCAGTTATAAAAAAATTG+AGG - chr5.4:9646597-9646616 MS.gene015219:intron 25.0%
! TATTCATTGTTTATAGTCAG+AGG + chr5.4:9647517-9647536 None:intergenic 25.0%
! TCCAAATCTAAATTAGAATC+AGG + chr5.4:9647752-9647771 None:intergenic 25.0%
! TCCTGATTCTAATTTAGATT+TGG - chr5.4:9647748-9647767 MS.gene015219:CDS 25.0%
! TCTAGTGATATTAATTGCAA+AGG + chr5.4:9647401-9647420 None:intergenic 25.0%
! TTGCAATTAATATCACTAGA+TGG - chr5.4:9647401-9647420 MS.gene015219:intron 25.0%
!! ATATAATGCATGAGTTGAAT+AGG + chr5.4:9646978-9646997 None:intergenic 25.0%
!! ATTTCATTTGGAAGTTTTTC+AGG - chr5.4:9646376-9646395 MS.gene015219:intron 25.0%
!! GCTTTTGAATCTATTTACAT+TGG - chr5.4:9647902-9647921 MS.gene015219:CDS 25.0%
AAAATCAATGAAAGAACTGG+AGG + chr5.4:9647006-9647025 None:intergenic 30.0%
AAATAGATTCAAAAGCTCTC+AGG + chr5.4:9647898-9647917 None:intergenic 30.0%
AAATCAATGAAAGAACTGGA+GGG + chr5.4:9647005-9647024 None:intergenic 30.0%
AACTAGATTGTACATCATCA+TGG + chr5.4:9647729-9647748 None:intergenic 30.0%
AACTTCCAAATGAAATTTGG+AGG + chr5.4:9646372-9646391 None:intergenic 30.0%
AGCTGACATAAAAATTTCAG+AGG - chr5.4:9647112-9647131 MS.gene015219:intron 30.0%
ATGAAATAACGAAGCTGTAT+AGG - chr5.4:9646033-9646052 MS.gene015219:CDS 30.0%
CTAGAACAAAATCATCAAAG+AGG + chr5.4:9646772-9646791 None:intergenic 30.0%
CTGCTTTAATCTTTGTCTAA+TGG - chr5.4:9647950-9647969 MS.gene015219:CDS 30.0%
GACAAGTTGTTAAGATAATC+CGG - chr5.4:9648180-9648199 MS.gene015219:CDS 30.0%
TATTGCCTCCAAATTTCATT+TGG - chr5.4:9646364-9646383 MS.gene015219:intron 30.0%
TGTTTATAGTCAGAGGAAAA+TGG + chr5.4:9647510-9647529 None:intergenic 30.0%
! AAGCTTTTAGATGTATTCTC+AGG - chr5.4:9647266-9647285 MS.gene015219:intron 30.0%
! GATCAATCAATCAAGTTTTG+TGG - chr5.4:9646412-9646431 MS.gene015219:intron 30.0%
! TCTGGAAATTAGAACGATTT+TGG - chr5.4:9647159-9647178 MS.gene015219:intron 30.0%
! TGTCTTTCTTAGCTTTCTTT+AGG + chr5.4:9647448-9647467 None:intergenic 30.0%
! TTTACATTGGATAGTTCTAC+TGG - chr5.4:9647915-9647934 MS.gene015219:CDS 30.0%
! TTTGAAGTACTCTGTCATTT+AGG + chr5.4:9647310-9647329 None:intergenic 30.0%
! TTTTAACCTTTCTTCTTTCC+TGG - chr5.4:9647701-9647720 MS.gene015219:CDS 30.0%
!! AGTTTTGTGGTGATTGTTAA+TGG - chr5.4:9646425-9646444 MS.gene015219:intron 30.0%
!! CAGAAATTTTTCAAATGCCT+AGG + chr5.4:9647652-9647671 None:intergenic 30.0%
!! CTATAAAGCATTTCCCTTTT+GGG - chr5.4:9647565-9647584 MS.gene015219:intron 30.0%
!! GTTTAGTGTTTTTGTTGATC+TGG - chr5.4:9646827-9646846 MS.gene015219:intron 30.0%
!! TATAAAGCATTTCCCTTTTG+GGG - chr5.4:9647566-9647585 MS.gene015219:intron 30.0%
AAGACATAAATCTGGTCAGA+GGG + chr5.4:9646209-9646228 None:intergenic 35.0%
AATCAATGAAAGAACTGGAG+GGG + chr5.4:9647004-9647023 None:intergenic 35.0%
AATCGAATGAGTACACTTGA+TGG - chr5.4:9646647-9646666 MS.gene015219:intron 35.0%
AATGTTGTAGTAGCTGATGT+TGG - chr5.4:9646725-9646744 MS.gene015219:intron 35.0%
ACTGACCTGAGTTTCTTTAA+CGG + chr5.4:9646584-9646603 None:intergenic 35.0%
ATACACCGTTAAAGAAACTC+AGG - chr5.4:9646576-9646595 MS.gene015219:intron 35.0%
ATCTGACAAACTTTCACTAC+AGG + chr5.4:9647851-9647870 None:intergenic 35.0%
ATGCCATAATATCTTGCAAC+TGG + chr5.4:9648152-9648171 None:intergenic 35.0%
CTAGATGGAACTATTCCATT+AGG - chr5.4:9647416-9647435 MS.gene015219:intron 35.0%
GATCCAGTTGCAAGATATTA+TGG - chr5.4:9648146-9648165 MS.gene015219:CDS 35.0%
GTCTTAAAGGATAAAGGGTT+GGG + chr5.4:9646933-9646952 None:intergenic 35.0%
TAGATGTATTCTCAGGTTAG+TGG - chr5.4:9647273-9647292 MS.gene015219:intron 35.0%
TATGTCGAAAGAAGAGTTCA+AGG - chr5.4:9646121-9646140 MS.gene015219:CDS 35.0%
TCGTTCTAATTTCCAGACTT+AGG + chr5.4:9647156-9647175 None:intergenic 35.0%
TCTTAAAGGATAAAGGGTTG+GGG + chr5.4:9646932-9646951 None:intergenic 35.0%
TGATGGCATTGTAACATTGA+AGG - chr5.4:9646664-9646683 MS.gene015219:intron 35.0%
TTCTTTAGGTGTTCACCTAA+TGG + chr5.4:9647434-9647453 None:intergenic 35.0%
! AAATTGTACTGATGCTGACA+TGG - chr5.4:9648030-9648049 MS.gene015219:CDS 35.0%
! AAGAGTTCAAGGAGAAGTAT+GGG - chr5.4:9646132-9646151 MS.gene015219:intron 35.0%
! ATGCATGAGTTGAATAGGAA+AGG + chr5.4:9646973-9646992 None:intergenic 35.0%
! GATTTTATAGTGCCTAAGTC+TGG - chr5.4:9647141-9647160 MS.gene015219:intron 35.0%
! TATTTGTACTGATGCTGACA+TGG - chr5.4:9648067-9648086 MS.gene015219:CDS 35.0%
! TGCATGAGTTGAATAGGAAA+GGG + chr5.4:9646972-9646991 None:intergenic 35.0%
!! GCTATAAAGCATTTCCCTTT+TGG - chr5.4:9647564-9647583 MS.gene015219:intron 35.0%
!! TTATAGCAGTTTGCTGTGAT+CGG + chr5.4:9647551-9647570 None:intergenic 35.0%
AGAAGACCTTGTCATCAACA+AGG - chr5.4:9646169-9646188 MS.gene015219:intron 40.0%
AGATATTATGGCATGAAGCG+TGG - chr5.4:9648158-9648177 MS.gene015219:CDS 40.0%
AGTAAAGAGAATGCCCCAAA+AGG + chr5.4:9647582-9647601 None:intergenic 40.0%
AGTGGCGTCTTAAAGGATAA+AGG + chr5.4:9646939-9646958 None:intergenic 40.0%
ATCAATGAAAGAACTGGAGG+GGG + chr5.4:9647003-9647022 None:intergenic 40.0%
ATCATAGACTAGTGAGAGTG+AGG + chr5.4:9647352-9647371 None:intergenic 40.0%
ATGGAACCAGGAAAGAAGAA+AGG + chr5.4:9647710-9647729 None:intergenic 40.0%
CCAGATTTATGTCTTCTTCC+CGG - chr5.4:9646214-9646233 MS.gene015219:intron 40.0%
CGTCTTAAAGGATAAAGGGT+TGG + chr5.4:9646934-9646953 None:intergenic 40.0%
CTTAAAGGATAAAGGGTTGG+GGG + chr5.4:9646931-9646950 None:intergenic 40.0%
GAAGACATAAATCTGGTCAG+AGG + chr5.4:9646210-9646229 None:intergenic 40.0%
GAAGAGTTCAAGGAGAAGTA+TGG - chr5.4:9646131-9646150 MS.gene015219:intron 40.0%
GGCATTGTAACATTGAAGGA+AGG - chr5.4:9646668-9646687 MS.gene015219:intron 40.0%
GTAAAGAGAATGCCCCAAAA+GGG + chr5.4:9647581-9647600 None:intergenic 40.0%
GTGGCGTCTTAAAGGATAAA+GGG + chr5.4:9646938-9646957 None:intergenic 40.0%
GTGGTGATTGTTAATGGTTG+AGG - chr5.4:9646431-9646450 MS.gene015219:intron 40.0%
TAACCTCAAAATCTCCAACG+AGG + chr5.4:9646100-9646119 None:intergenic 40.0%
TAACGAAGCTGTATAGGATC+CGG - chr5.4:9646039-9646058 MS.gene015219:CDS 40.0%
TATAGTCAGAGGAAAATGGC+TGG + chr5.4:9647506-9647525 None:intergenic 40.0%
TATGTCAGCTTGATGTTGCA+GGG + chr5.4:9647102-9647121 None:intergenic 40.0%
TTAAAGGATAAAGGGTTGGG+GGG + chr5.4:9646930-9646949 None:intergenic 40.0%
TTACTGTTGCAGATTGTCAG+TGG - chr5.4:9647072-9647091 MS.gene015219:intron 40.0%
TTATGTCAGCTTGATGTTGC+AGG + chr5.4:9647103-9647122 None:intergenic 40.0%
TTGTACATCATCATGGAACC+AGG + chr5.4:9647722-9647741 None:intergenic 40.0%
! AGAGTTCAAGGAGAAGTATG+GGG - chr5.4:9646133-9646152 MS.gene015219:intron 40.0%
! TTACCTCGTTGGAGATTTTG+AGG - chr5.4:9646094-9646113 MS.gene015219:CDS 40.0%
!! TTATCCTTTAAGACGCCACT+CGG - chr5.4:9646939-9646958 MS.gene015219:intron 40.0%
!!! GTCAGAGGGATTGTCTTTTT+TGG + chr5.4:9646195-9646214 None:intergenic 40.0%
!!! TTTTGGCCTTGTTGATGACA+AGG + chr5.4:9646178-9646197 None:intergenic 40.0%
AACGGTGTATCTCTCGAGTA+AGG + chr5.4:9646566-9646585 None:intergenic 45.0%
AAGCACGCACACACTAACAA+CGG + chr5.4:9646460-9646479 None:intergenic 45.0%
AGTTGAATAGGAAAGGGCTG+TGG + chr5.4:9646966-9646985 None:intergenic 45.0%
ATGCTTATTCCCCTCGCTAT+CGG - chr5.4:9646894-9646913 MS.gene015219:intron 45.0%
ATTCTCGGAGTTCATGCGTT+TGG + chr5.4:9646279-9646298 None:intergenic 45.0%
CATGACAGGAATTACCTCGT+TGG - chr5.4:9646083-9646102 MS.gene015219:CDS 45.0%
CCGGGAAGAAGACATAAATC+TGG + chr5.4:9646217-9646236 None:intergenic 45.0%
GAACTCCGAGAATGTCTACA+GGG - chr5.4:9646286-9646305 MS.gene015219:intron 45.0%
GATTTATGTCTTCTTCCCGG+AGG - chr5.4:9646217-9646236 MS.gene015219:intron 45.0%
TATCTTCCTGCAGTCTCACT+TGG + chr5.4:9648206-9648225 None:intergenic 45.0%
TGAACTCCGAGAATGTCTAC+AGG - chr5.4:9646285-9646304 MS.gene015219:intron 45.0%
TGATGGAGATGCTTCATGAC+AGG - chr5.4:9646069-9646088 MS.gene015219:CDS 45.0%
TGTGCTTGTGCCAAAACATC+AGG - chr5.4:9646516-9646535 MS.gene015219:intron 45.0%
TTCTCAGCTACCTAGAATCC+AGG - chr5.4:9648118-9648137 MS.gene015219:CDS 45.0%
! TCAGTCAGCACCTGATGTTT+TGG + chr5.4:9646529-9646548 None:intergenic 45.0%
! TTTGAGATGACCGATAGCGA+GGG + chr5.4:9646907-9646926 None:intergenic 45.0%
CCAGACCAGACTTACTAACC+AGG - chr5.4:9646322-9646341 MS.gene015219:intron 50.0%
CCAGACTTACTAACCAGGCA+CGG - chr5.4:9646327-9646346 MS.gene015219:intron 50.0%
CCTGGTTAGTAAGTCTGGTC+TGG + chr5.4:9646325-9646344 None:intergenic 50.0%
GATGGCCCTGTAGACATTCT+CGG + chr5.4:9646294-9646313 None:intergenic 50.0%
GCTACCTAGAATCCAGGTGA+CGG - chr5.4:9648124-9648143 MS.gene015219:CDS 50.0%
GCTGTATAGGATCCGGAAGA+CGG - chr5.4:9646046-9646065 MS.gene015219:CDS 50.0%
TCAGGACAAGCGAACGACAA+GGG + chr5.4:9647880-9647899 None:intergenic 50.0%
TCTGGTCTGGCAAACGATGA+TGG + chr5.4:9646312-9646331 None:intergenic 50.0%
TGGTGTAAGTCCTGAAGGTG+TGG + chr5.4:9646259-9646278 None:intergenic 50.0%
TTGAGATGACCGATAGCGAG+GGG + chr5.4:9646906-9646925 None:intergenic 50.0%
! GTTTGAGATGACCGATAGCG+AGG + chr5.4:9646908-9646927 None:intergenic 50.0%
!! GCGTTTGGTGTAAGTCCTGA+AGG + chr5.4:9646264-9646283 None:intergenic 50.0%
ACGCCAACCTTGTCTTCCTC+CGG + chr5.4:9646236-9646255 None:intergenic 55.0%
CAGAGATACTGTTCCGTGCC+TGG + chr5.4:9646343-9646362 None:intergenic 55.0%
CCGTGCCTGGTTAGTAAGTC+TGG + chr5.4:9646330-9646349 None:intergenic 55.0%
CTCAGGACAAGCGAACGACA+AGG + chr5.4:9647881-9647900 None:intergenic 55.0%
CTTCTTCCCGGAGGAAGACA+AGG - chr5.4:9646226-9646245 MS.gene015219:intron 55.0%
GCATCTCCATCACCGTCTTC+CGG + chr5.4:9646061-9646080 None:intergenic 55.0%
GGATCCGTCACCTGGATTCT+AGG + chr5.4:9648131-9648150 None:intergenic 55.0%
GTTAGTGTGTGCGTGCTTGC+AGG - chr5.4:9646462-9646481 MS.gene015219:intron 55.0%
TAGGATCCGGAAGACGGTGA+TGG - chr5.4:9646052-9646071 MS.gene015219:CDS 55.0%
TGGACCGAGTGGCGTCTTAA+AGG + chr5.4:9646946-9646965 None:intergenic 55.0%
TTCCCGGAGGAAGACAAGGT+TGG - chr5.4:9646230-9646249 MS.gene015219:intron 55.0%
TTCCTGCAGTCTCACTTGGC+CGG + chr5.4:9648202-9648221 None:intergenic 55.0%
TTGCAACTGGATCCGTCACC+TGG + chr5.4:9648139-9648158 None:intergenic 55.0%
AGGTTGGCGTCCACACCTTC+AGG - chr5.4:9646246-9646265 MS.gene015219:intron 60.0%
AGTGTGTGCGTGCTTGCAGG+AGG - chr5.4:9646465-9646484 MS.gene015219:intron 60.0%
ATCCGGCCAAGTGAGACTGC+AGG - chr5.4:9648197-9648216 MS.gene015219:CDS 60.0%
CGCCAACCTTGTCTTCCTCC+GGG + chr5.4:9646235-9646254 None:intergenic 60.0%
GGAAAGGGCTGTGGACCGAG+TGG + chr5.4:9646957-9646976 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 9646017 9648250 9646017 ID=MS.gene015219
chr5.4 mRNA 9646017 9648250 9646017 ID=MS.gene015219.t1;Parent=MS.gene015219
chr5.4 exon 9647870 9648250 9647870 ID=MS.gene015219.t1.exon1;Parent=MS.gene015219.t1
chr5.4 CDS 9647870 9648250 9647870 ID=cds.MS.gene015219.t1;Parent=MS.gene015219.t1
chr5.4 exon 9647670 9647783 9647670 ID=MS.gene015219.t1.exon2;Parent=MS.gene015219.t1
chr5.4 CDS 9647670 9647783 9647670 ID=cds.MS.gene015219.t1;Parent=MS.gene015219.t1
chr5.4 exon 9646017 9646142 9646017 ID=MS.gene015219.t1.exon3;Parent=MS.gene015219.t1
chr5.4 CDS 9646017 9646142 9646017 ID=cds.MS.gene015219.t1;Parent=MS.gene015219.t1
Gene Sequence

>MS.gene015219

ATGGTGTTTTCGGAGGATGAAATAACGAAGCTGTATAGGATCCGGAAGACGGTGATGGAGATGCTTCATGACAGGAATTACCTCGTTGGAGATTTTGAGGTTAATATGTCGAAAGAAGAGTTCAAGGAGAAGTATGGGGAGAACATGAAGAGAGAAGACCTTGTCATCAACAAGGCCAAAAAAGACAATCCCTCTGACCAGATTTATGTCTTCTTCCCGGAGGAAGACAAGGTTGGCGTCCACACCTTCAGGACTTACACCAAACGCATGAACTCCGAGAATGTCTACAGGGCCATCATCGTTTGCCAGACCAGACTTACTAACCAGGCACGGAACAGTATCTCTGATATTGCCTCCAAATTTCATTTGGAAGTTTTTCAGGTAATTCATCAATCGATCAATCAATCAAGTTTTGTGGTGATTGTTAATGGTTGAGGTAACCGTTGTTAGTGTGTGCGTGCTTGCAGGAGGCTGAATTGCTCGTTAATGTAAGATATCATGTGCTTGTGCCAAAACATCAGGTGCTGACTGAAAATGAGAAGAAAACCTTACTCGAGAGATACACCGTTAAAGAAACTCAGGTCAGTTATAAAAAAATTGAGGAAATTTTGTGTTATTTAGAATGTGAGTAATCGAATGAGTACACTTGATGGCATTGTAACATTGAAGGAAGGACAAAGTGAAAATGTAAACTATTAGGACTTTGTTAATGTTGTAGTAGCTGATGTTGGATTGTTATTCGTATTTTAGTTCCTCTTTGATGATTTTGTTCTAGCTTATAACATTATGTTAAATTGTTTATTTTCTTTCGTTTAGTGTTTTTGTTGATCTGGAAAATAGTGAATTAACTTCAGAATGAAGTGAGCATGAAAGAGTTATGCTTATTCCCCTCGCTATCGGTCATCTCAAACCCCCCAACCCTTTATCCTTTAAGACGCCACTCGGTCCACAGCCCTTTCCTATTCAACTCATGCATTATATCTCCCCCTCCAGTTCTTTCATTGATTTTCTTTGATTGTCTTAAATAATCACTTGGGTGAGTATTTAGATAGAGCTTACTGTTGCAGATTGTCAGTGGCGTACCCTGCAACATCAAGCTGACATAAAAATTTCAGAGGAAATCAGATTTTATAGTGCCTAAGTCTGGAAATTAGAACGATTTTGGTAGTACACATTAAGATTGTTGAGTGATTTAAAGCTGAATATCGTGTATAATACTATTAATTATAGAAAATTAAGTGATCTGTCTAAGCTTTTAGATGTATTCTCAGGTTAGTGGATACTGACTTTCCTAAATGACAGAGTACTTCAAATATAACTTCATCATTTGTACCTCACTCTCACTAGTCTATGATTTCGTAAAAATTAAAATATATGATGTCCTTTGCAATTAATATCACTAGATGGAACTATTCCATTAGGTGAACACCTAAAGAAAGCTAAGAAAGACAATTATTATCATATAAGGGGAAACAACATACTTATTCCAGCCATTTTCCTCTGACTATAAACAATGAATAGCTACAATCAGCCGATCACAGCAAACTGCTATAAAGCATTTCCCTTTTGGGGCATTCTCTTTACTTATCCCAGCCATTTATTTATTTTGTAAAGTTATATAATAGTATTTCACCTAGGCATTTGAAAAATTTCTGCACACACTCACACGTGCTTCATCTCTGAATTTTAACCTTTCTTCTTTCCTGGTTCCATGATGATGTACAATCTAGTTCCTGATTCTAATTTAGATTTGGATGTAATTAAGAATGCATGAAAAGCAAAATTAGCATCCATTGTATTTCATGCAAATAAAACTTCTTCATTGTTTATTCCTGTAGTGAAAGTTTGTCAGATTTGTCACCCTTGTCGTTCGCTTGTCCTGAGAGCTTTTGAATCTATTTACATTGGATAGTTCTACTGGTTTTAGTGTTTACTGCTTTAATCTTTGTCTAATGGATGTACCGTTCTTGTTTGCATATTGTATTGTATGTGCAATTGTATCATTCTACTACAAAATTGTACTGATGCTGACATGGTTCACTATATCTAATATTTGTACTGATGCTGACATGGTTCACTATATCTAATATTTATGGTCTGTTTCTCAGCTACCTAGAATCCAGGTGACGGATCCAGTTGCAAGATATTATGGCATGAAGCGTGGACAAGTTGTTAAGATAATCCGGCCAAGTGAGACTGCAGGAAGATATGTTACATACCGATTTGTTGTATAA
Protein sequence

>MS.gene015219.t1

MVFSEDEITKLYRIRKTVMEMLHDRNYLVGDFEVNMSKEEFKEKYGENMKREDLVINKAKKDNPSDQIYVFFPEEDKVGVHTFRTYTKRMNSENVYRAIIVCQTRLTNQARNSISDIASKFHLEVFQEAELLVNVRYHVLVPKHQVLTENEKKTLLERYTVKETQLPRIQVTDPVARYYGMKRGQVVKIIRPSETAGRYVTYRFVV