Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38787.t1 | XP_003625033.1 | 95.6 | 248 | 7 | 2 | 1 | 244 | 1 | 248 | 5.80E-123 | 450.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38787.t1 | Q9M1J2 | 56.2 | 226 | 95 | 1 | 19 | 244 | 1 | 222 | 4.1e-69 | 262.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38787.t1 | A2Q2Z5 | 95.6 | 248 | 7 | 2 | 1 | 244 | 1 | 248 | 4.2e-123 | 450.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92338 | MS.gene38787 | PPI |
| MS.gene20260 | MS.gene38787 | PPI |
| MS.gene014019 | MS.gene38787 | PPI |
| MS.gene09560 | MS.gene38787 | PPI |
| MS.gene39138 | MS.gene38787 | PPI |
| MS.gene57185 | MS.gene38787 | PPI |
| MS.gene38787 | MS.gene046919 | PPI |
| MS.gene017777 | MS.gene38787 | PPI |
| MS.gene57186 | MS.gene38787 | PPI |
| MS.gene015218 | MS.gene38787 | PPI |
| MS.gene20258 | MS.gene38787 | PPI |
| MS.gene015219 | MS.gene38787 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38787.t1 | MTR_7g090220 | 95.565 | 248 | 7 | 2 | 1 | 244 | 1 | 248 | 7.73e-175 | 481 |
| MS.gene38787.t1 | MTR_6g042230 | 38.693 | 199 | 120 | 2 | 46 | 243 | 7 | 204 | 1.95e-42 | 143 |
| MS.gene38787.t1 | MTR_5g005470 | 39.500 | 200 | 118 | 2 | 46 | 243 | 7 | 205 | 1.16e-41 | 141 |
| MS.gene38787.t1 | MTR_6g088020 | 39.086 | 197 | 115 | 2 | 49 | 241 | 10 | 205 | 8.66e-41 | 139 |
| MS.gene38787.t1 | MTR_6g088010 | 39.267 | 191 | 111 | 2 | 55 | 241 | 16 | 205 | 1.71e-40 | 138 |
| MS.gene38787.t1 | MTR_5g016200 | 37.436 | 195 | 120 | 2 | 46 | 240 | 7 | 199 | 5.61e-39 | 134 |
| MS.gene38787.t1 | MTR_5g016220 | 36.500 | 200 | 124 | 2 | 46 | 243 | 132 | 330 | 1.82e-38 | 137 |
| MS.gene38787.t1 | MTR_3g058520 | 34.742 | 213 | 80 | 7 | 22 | 233 | 5 | 159 | 5.47e-29 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38787.t1 | AT3G57080 | 56.195 | 226 | 95 | 1 | 19 | 244 | 1 | 222 | 7.47e-96 | 280 |
| MS.gene38787.t1 | AT2G41340 | 59.804 | 204 | 82 | 0 | 40 | 243 | 14 | 217 | 4.58e-92 | 270 |
| MS.gene38787.t1 | AT2G41340 | 57.396 | 169 | 72 | 0 | 40 | 208 | 14 | 182 | 1.35e-70 | 215 |
| MS.gene38787.t1 | AT2G41340 | 59.146 | 164 | 67 | 0 | 40 | 203 | 14 | 177 | 2.38e-70 | 214 |
| MS.gene38787.t1 | AT3G54490 | 43.541 | 209 | 118 | 0 | 35 | 243 | 24 | 232 | 1.83e-61 | 193 |
| MS.gene38787.t1 | AT3G22320 | 36.500 | 200 | 124 | 2 | 46 | 243 | 6 | 204 | 1.76e-36 | 128 |
| MS.gene38787.t1 | AT5G57980 | 36.493 | 211 | 121 | 5 | 40 | 241 | 1 | 207 | 2.26e-32 | 117 |
Find 50 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTATATCATACTTCTTC+AGG | 0.242396 | 7.1:-17136614 | None:intergenic |
| GATGCAATTGCTCGATATTA+TGG | 0.243591 | 7.1:+17137265 | MS.gene38787:CDS |
| AGCTCTCTCTTGATGATTTC+CGG | 0.296538 | 7.1:+17133909 | MS.gene38787:CDS |
| AGGGGTATGGCGACTGAAAA+TGG | 0.300588 | 7.1:+17133683 | None:intergenic |
| TGCATCTGTTTGTAGCATTC+GGG | 0.306371 | 7.1:-17137248 | None:intergenic |
| CATCGTTGTTATTGCTGTTT+CGG | 0.317384 | 7.1:-17133723 | None:intergenic |
| TTGCATCTGTTTGTAGCATT+CGG | 0.338079 | 7.1:-17137249 | None:intergenic |
| GATGATTTCCGGCAAATTCA+TGG | 0.357287 | 7.1:+17133920 | MS.gene38787:CDS |
| ATCGATAGGTAACATGCATC+TGG | 0.368224 | 7.1:-17137336 | None:intergenic |
| TCAGTCAACACCTGATGCTT+TGG | 0.372400 | 7.1:-17136573 | None:intergenic |
| TGTTAATCTTCTCTCTTTCA+AGG | 0.372770 | 7.1:+17134252 | MS.gene38787:CDS |
| ATCAAAGAGAGAGACCCTTT+TGG | 0.387197 | 7.1:-17133999 | None:intergenic |
| GAGATTGGCCATGAATTTGC+CGG | 0.401668 | 7.1:-17133928 | None:intergenic |
| TTGTTCACCAAGATGGATAA+TGG | 0.412324 | 7.1:+17133794 | MS.gene38787:CDS |
| TATGCTTCCATTATCCATCT+TGG | 0.423538 | 7.1:-17133801 | None:intergenic |
| ATGCCACTAACCCCTCCAAA+AGG | 0.454191 | 7.1:+17133984 | MS.gene38787:CDS |
| TGTATTGAAGCCAAAGCATC+AGG | 0.467598 | 7.1:+17136563 | MS.gene38787:CDS |
| GACGATCAACATCAGGAGAT+TGG | 0.475030 | 7.1:-17133943 | None:intergenic |
| TAAGTGTTTGTTCACCAAGA+TGG | 0.482415 | 7.1:+17133787 | MS.gene38787:CDS |
| CCAGGGATAGTGAAAGTGAA+TGG | 0.482754 | 7.1:+17134133 | MS.gene38787:CDS |
| CAGGGATAGTGAAAGTGAAT+GGG | 0.483393 | 7.1:+17134134 | MS.gene38787:CDS |
| CCATTCACTTTCACTATCCC+TGG | 0.484269 | 7.1:-17134133 | None:intergenic |
| ACTGAAAATGGAGGACAAAA+CGG | 0.521986 | 7.1:+17133695 | MS.gene38787:CDS |
| GTGAACAGAGACAGTTTGAC+TGG | 0.526473 | 7.1:+17134181 | MS.gene38787:CDS |
| CGTTGTTATTGCTGTTTCGG+TGG | 0.535026 | 7.1:-17133720 | None:intergenic |
| TGGCATGAGTAGCAGTAAAA+CGG | 0.535822 | 7.1:-17133967 | None:intergenic |
| GAGAGCTGGATTTCATCAGA+AGG | 0.539635 | 7.1:-17133893 | None:intergenic |
| AAACGGAGACGATCAACATC+AGG | 0.547032 | 7.1:-17133950 | None:intergenic |
| GTATGATATACAAGAAAAGC+AGG | 0.547642 | 7.1:+17136623 | MS.gene38787:CDS |
| ATGCATCTGGGTGATTTCAC+CGG | 0.552988 | 7.1:-17137323 | None:intergenic |
| ATGTTACCTATCGATGCGTT+TGG | 0.556524 | 7.1:+17137344 | MS.gene38787:CDS |
| TGCCACTAACCCCTCCAAAA+GGG | 0.558127 | 7.1:+17133985 | MS.gene38787:CDS |
| TCGATATTATGGACTTCAGA+GGG | 0.558922 | 7.1:+17137276 | MS.gene38787:CDS |
| GGAAATCATCAAGAGAGAGC+TGG | 0.565999 | 7.1:-17133907 | None:intergenic |
| CTGGGTGATTTCACCGGTGT+AGG | 0.580902 | 7.1:-17137317 | None:intergenic |
| CTCGATATTATGGACTTCAG+AGG | 0.581661 | 7.1:+17137275 | MS.gene38787:CDS |
| ATATCACCAAACGCATCGAT+AGG | 0.584034 | 7.1:-17137350 | None:intergenic |
| TCGATAGGTAACATGCATCT+GGG | 0.601581 | 7.1:-17137335 | None:intergenic |
| ACAACGATGGAGATCGAAAG+CGG | 0.612615 | 7.1:+17133737 | MS.gene38787:CDS |
| ATCTTGGTGAACAAACACTT+AGG | 0.617123 | 7.1:-17133785 | None:intergenic |
| AGAGCTGGATTTCATCAGAA+GGG | 0.630001 | 7.1:-17133892 | None:intergenic |
| CGAAACAGCAATAACAACGA+TGG | 0.637396 | 7.1:+17133724 | MS.gene38787:CDS |
| AATGGGGTAAGAGACATAGC+AGG | 0.645159 | 7.1:+17134151 | MS.gene38787:CDS |
| GCATCTGTTTGTAGCATTCG+GGG | 0.645626 | 7.1:-17137247 | None:intergenic |
| GATATTATGGACTTCAGAGG+GGG | 0.662903 | 7.1:+17137278 | MS.gene38787:CDS |
| CTTGAGATGCTCAAAGACAG+AGG | 0.664708 | 7.1:+17133860 | MS.gene38787:CDS |
| AGGGATAGTGAAAGTGAATG+GGG | 0.668631 | 7.1:+17134135 | MS.gene38787:CDS |
| GTAGTTAAAGTTACCTACAC+CGG | 0.687721 | 7.1:+17137304 | MS.gene38787:CDS |
| CGATATTATGGACTTCAGAG+GGG | 0.705019 | 7.1:+17137277 | MS.gene38787:CDS |
| GGTATGGCGACTGAAAATGG+AGG | 0.771897 | 7.1:+17133686 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTAATATAGAAATAAAT+AGG | + | chr7.1:17135481-17135500 | MS.gene38787:intron | 10.0% |
| !!! | TATTTTTTTATATGAAAACT+AGG | + | chr7.1:17134038-17134057 | MS.gene38787:intron | 10.0% |
| !! | AAACATTGAAAAAAGTTATT+TGG | - | chr7.1:17136976-17136995 | None:intergenic | 15.0% |
| !! | AGAAATAAATAGGTTTAAAT+AGG | + | chr7.1:17135491-17135510 | MS.gene38787:intron | 15.0% |
| !! | AGATATCTAAATATTAATGT+AGG | - | chr7.1:17136404-17136423 | None:intergenic | 15.0% |
| !! | TTATAGGTTTCTTAATATTA+GGG | - | chr7.1:17134829-17134848 | None:intergenic | 15.0% |
| !! | TTTATAGGTTTCTTAATATT+AGG | - | chr7.1:17134830-17134849 | None:intergenic | 15.0% |
| !!! | TATACTTTTTTCTAATGTAA+TGG | - | chr7.1:17135297-17135316 | None:intergenic | 15.0% |
| !! | AAAAAACATTGAGTTAAAAG+AGG | - | chr7.1:17134318-17134337 | None:intergenic | 20.0% |
| !! | AAATCATGTTGAATTATCAA+TGG | - | chr7.1:17136841-17136860 | None:intergenic | 20.0% |
| !! | AACAAGACTTAATATAAGAA+TGG | - | chr7.1:17137216-17137235 | None:intergenic | 20.0% |
| !! | AACGAATATGTAGAAAATAT+AGG | + | chr7.1:17135436-17135455 | MS.gene38787:intron | 20.0% |
| !! | ATAACTAAGAAAATAAGATG+TGG | - | chr7.1:17135918-17135937 | None:intergenic | 20.0% |
| !! | CTTAATATTAGGGTTTAATT+TGG | - | chr7.1:17134819-17134838 | None:intergenic | 20.0% |
| !! | TAATATAAGAATGGTAGTAT+TGG | - | chr7.1:17137207-17137226 | None:intergenic | 20.0% |
| !! | TATGTATCTTTGACATTTAT+AGG | - | chr7.1:17134845-17134864 | None:intergenic | 20.0% |
| !! | TTTCCAACTTCAAAAAAAAT+AGG | - | chr7.1:17134726-17134745 | None:intergenic | 20.0% |
| !!! | AAAAGTTGAATTAGTTTGTT+AGG | + | chr7.1:17134661-17134680 | MS.gene38787:intron | 20.0% |
| !!! | AAGCATCATTTTTTAAAATG+AGG | - | chr7.1:17136096-17136115 | None:intergenic | 20.0% |
| !!! | AGAGTATTTGGATATTAATT+TGG | - | chr7.1:17135534-17135553 | None:intergenic | 20.0% |
| !!! | ATGAGTTATTAAGTTTTCTA+AGG | + | chr7.1:17136743-17136762 | MS.gene38787:intron | 20.0% |
| !!! | ATTGATAATTCAACATGATT+TGG | + | chr7.1:17136840-17136859 | MS.gene38787:intron | 20.0% |
| !!! | CAATGTTTGAGTTAAATTTT+GGG | + | chr7.1:17136988-17137007 | MS.gene38787:intron | 20.0% |
| !!! | GTTTAAAGAAGTATTATGAT+TGG | - | chr7.1:17134636-17134655 | None:intergenic | 20.0% |
| !!! | TATTTTTGTGTTAATGTCAA+TGG | - | chr7.1:17134882-17134901 | None:intergenic | 20.0% |
| !!! | TCAATGTTTGAGTTAAATTT+TGG | + | chr7.1:17136987-17137006 | MS.gene38787:intron | 20.0% |
| !!! | TTACCTATTTTTTTTGAAGT+TGG | + | chr7.1:17134720-17134739 | MS.gene38787:intron | 20.0% |
| !!! | TTTGTTTTTCTGTTAGAAAA+TGG | + | chr7.1:17134544-17134563 | MS.gene38787:intron | 20.0% |
| ! | AATAACAGCTTAGAGATATT+TGG | + | chr7.1:17135234-17135253 | MS.gene38787:intron | 25.0% |
| ! | ACAAACAAAATATTTCGTTC+AGG | - | chr7.1:17136684-17136703 | None:intergenic | 25.0% |
| ! | ACCTTAAACAAACAATCTTA+AGG | - | chr7.1:17136786-17136805 | None:intergenic | 25.0% |
| ! | ATCAAATTATCAAGTGAGTA+GGG | - | chr7.1:17136378-17136397 | None:intergenic | 25.0% |
| ! | ATTCAACATTAAAGAATGAC+TGG | - | chr7.1:17136165-17136184 | None:intergenic | 25.0% |
| ! | CTTACATGCAAATTTCAATA+AGG | + | chr7.1:17136213-17136232 | MS.gene38787:intron | 25.0% |
| ! | TATCAAATTATCAAGTGAGT+AGG | - | chr7.1:17136379-17136398 | None:intergenic | 25.0% |
| ! | TCATTCTTTAATGTTGAATC+TGG | + | chr7.1:17136166-17136185 | MS.gene38787:intron | 25.0% |
| ! | TCCTTAAGATTGTTTGTTTA+AGG | + | chr7.1:17136782-17136801 | MS.gene38787:intron | 25.0% |
| ! | TTATATGAAAACTAGGTATC+TGG | + | chr7.1:17134045-17134064 | MS.gene38787:intron | 25.0% |
| !! | TACGCATAATTTAAGTTATC+TGG | - | chr7.1:17136038-17136057 | None:intergenic | 25.0% |
| !! | TTGAAGAATGTTTGGAATTA+AGG | + | chr7.1:17134749-17134768 | MS.gene38787:intron | 25.0% |
| !! | TTTCAAGGTTGAAATTTTTC+AGG | + | chr7.1:17134267-17134286 | MS.gene38787:CDS | 25.0% |
| AAATCAAAGCAGATGAATGT+GGG | - | chr7.1:17135777-17135796 | None:intergenic | 30.0% | |
| AACTACATAACAAAGCAAAG+CGG | + | chr7.1:17134914-17134933 | MS.gene38787:intron | 30.0% | |
| AAGTGCAGGTATTTATTTGA+AGG | + | chr7.1:17135402-17135421 | MS.gene38787:intron | 30.0% | |
| ATTCTCTTTCTATGCATGTA+AGG | + | chr7.1:17137109-17137128 | MS.gene38787:intron | 30.0% | |
| CAGTTTCGATAAAAAGAGAT+AGG | - | chr7.1:17135657-17135676 | None:intergenic | 30.0% | |
| CTCTTTAGTAATTGGTTAGT+AGG | + | chr7.1:17135263-17135282 | MS.gene38787:intron | 30.0% | |
| CTTGTATATCATACTTCTTC+AGG | - | chr7.1:17136617-17136636 | None:intergenic | 30.0% | |
| GGATAGTTCTCTTTAGTAAT+TGG | + | chr7.1:17135255-17135274 | MS.gene38787:intron | 30.0% | |
| GGATTTAAATACAACAGACA+TGG | - | chr7.1:17135600-17135619 | None:intergenic | 30.0% | |
| GTATGATATACAAGAAAAGC+AGG | + | chr7.1:17136623-17136642 | MS.gene38787:CDS | 30.0% | |
| GTTGTATCACTAATCAATGT+GGG | - | chr7.1:17136954-17136973 | None:intergenic | 30.0% | |
| TGTTAATCTTCTCTCTTTCA+AGG | + | chr7.1:17134252-17134271 | MS.gene38787:CDS | 30.0% | |
| TGTTTCAGATTACCTTAAAC+AGG | - | chr7.1:17135373-17135392 | None:intergenic | 30.0% | |
| TTAAAATCGAGATCCTAGAT+AGG | - | chr7.1:17136005-17136024 | None:intergenic | 30.0% | |
| TTATTCAAACATTCCAAGCA+TGG | - | chr7.1:17135219-17135238 | None:intergenic | 30.0% | |
| TTGGCATGTAAGAACAAAAA+TGG | + | chr7.1:17134691-17134710 | MS.gene38787:intron | 30.0% | |
| ! | ACATGAGATTTTCAAATGTG+TGG | + | chr7.1:17135678-17135697 | MS.gene38787:intron | 30.0% |
| ! | AGTTTGAGATGTTTACAAGT+TGG | + | chr7.1:17136245-17136264 | MS.gene38787:intron | 30.0% |
| ! | ATAAGAATGGTAGTATTGGA+AGG | - | chr7.1:17137203-17137222 | None:intergenic | 30.0% |
| ! | CATGAGATTTTCAAATGTGT+GGG | + | chr7.1:17135679-17135698 | MS.gene38787:intron | 30.0% |
| ! | CATGATTTGGATATCTGAAA+TGG | + | chr7.1:17136853-17136872 | MS.gene38787:intron | 30.0% |
| ! | GAAAATGGTAAACATGCTTT+TGG | + | chr7.1:17134559-17134578 | MS.gene38787:intron | 30.0% |
| ! | GGTTAATCAAACAGAGTATT+TGG | - | chr7.1:17135546-17135565 | None:intergenic | 30.0% |
| ! | GTTTGAGATGTTTACAAGTT+GGG | + | chr7.1:17136246-17136265 | MS.gene38787:intron | 30.0% |
| ! | TACATGACTTTTCTCTTACA+AGG | - | chr7.1:17135345-17135364 | None:intergenic | 30.0% |
| ! | TCAGCAACTTGGATTTTATA+AGG | - | chr7.1:17135621-17135640 | None:intergenic | 30.0% |
| ! | TCTTGGTCAACTGTTATTTA+TGG | + | chr7.1:17136812-17136831 | MS.gene38787:intron | 30.0% |
| !! | GGAAACTTTTGAAGAATGTT+TGG | + | chr7.1:17134741-17134760 | MS.gene38787:intron | 30.0% |
| !! | TAATGAGTGTTTGAGTTGTT+GGG | + | chr7.1:17134081-17134100 | MS.gene38787:intron | 30.0% |
| !!! | ACGGTCTTATAATTTTGACT+TGG | - | chr7.1:17137024-17137043 | None:intergenic | 30.0% |
| !!! | AGATTTTGGTGGTTTTTAGT+GGG | + | chr7.1:17134110-17134129 | MS.gene38787:intron | 30.0% |
| !!! | TAGTTTGTTAGGCATTGTTT+TGG | + | chr7.1:17134672-17134691 | MS.gene38787:intron | 30.0% |
| !!! | TGTTTTGCTGTTTATACTCT+GGG | + | chr7.1:17136701-17136720 | MS.gene38787:intron | 30.0% |
| !!! | TTGTTTAAGGTTTTGAGTCT+TGG | + | chr7.1:17136795-17136814 | MS.gene38787:intron | 30.0% |
| !!! | TTGTTTTGCTGTTTATACTC+TGG | + | chr7.1:17136700-17136719 | MS.gene38787:intron | 30.0% |
| AAACAGACATGATAAAGTGC+AGG | + | chr7.1:17135388-17135407 | MS.gene38787:intron | 35.0% | |
| AAGAATGACTGGTGTATTCA+AGG | - | chr7.1:17136154-17136173 | None:intergenic | 35.0% | |
| ACAAAACCTCAACTTGGTAA+GGG | + | chr7.1:17134976-17134995 | MS.gene38787:intron | 35.0% | |
| ACTGAAAATGGAGGACAAAA+CGG | + | chr7.1:17133695-17133714 | MS.gene38787:CDS | 35.0% | |
| AGAAAAATTGAGTTCAGTGG+TGG | + | chr7.1:17135050-17135069 | MS.gene38787:intron | 35.0% | |
| AGAGTCAACAAGTTTCTTGT+TGG | - | chr7.1:17136443-17136462 | None:intergenic | 35.0% | |
| AGTCAACAAGTTTCTTGTTG+GGG | - | chr7.1:17136441-17136460 | None:intergenic | 35.0% | |
| ATCTTGGTGAACAAACACTT+AGG | - | chr7.1:17133788-17133807 | None:intergenic | 35.0% | |
| CAACTCAAACACTCATTAGT+CGG | - | chr7.1:17134079-17134098 | None:intergenic | 35.0% | |
| CAGTAGTTGCAAAACTGAAA+CGG | - | chr7.1:17137043-17137062 | None:intergenic | 35.0% | |
| CCTAAACTCAAGTTTACACT+AGG | - | chr7.1:17135174-17135193 | None:intergenic | 35.0% | |
| CCTAGTGTAAACTTGAGTTT+AGG | + | chr7.1:17135171-17135190 | MS.gene38787:intron | 35.0% | |
| GAAATCAAAGCAGATGAATG+TGG | - | chr7.1:17135778-17135797 | None:intergenic | 35.0% | |
| GAGAGAAAAATTGAGTTCAG+TGG | + | chr7.1:17135047-17135066 | MS.gene38787:intron | 35.0% | |
| GAGTCAACAAGTTTCTTGTT+GGG | - | chr7.1:17136442-17136461 | None:intergenic | 35.0% | |
| GATGCAATTGCTCGATATTA+TGG | + | chr7.1:17137265-17137284 | MS.gene38787:CDS | 35.0% | |
| GGAAAATATCAGTCGTAAGA+TGG | - | chr7.1:17135828-17135847 | None:intergenic | 35.0% | |
| GGTTGTATCACTAATCAATG+TGG | - | chr7.1:17136955-17136974 | None:intergenic | 35.0% | |
| GTAAGATGGCTTATGCTAAA+GGG | - | chr7.1:17135814-17135833 | None:intergenic | 35.0% | |
| GTAGTTAAAGTTACCTACAC+CGG | + | chr7.1:17137304-17137323 | MS.gene38787:CDS | 35.0% | |
| TAAGTGTTTGTTCACCAAGA+TGG | + | chr7.1:17133787-17133806 | MS.gene38787:CDS | 35.0% | |
| TACAATCCTTGATCCTATCT+AGG | + | chr7.1:17135989-17136008 | MS.gene38787:intron | 35.0% | |
| TATGCTTCCATTATCCATCT+TGG | - | chr7.1:17133804-17133823 | None:intergenic | 35.0% | |
| TCATGTACTTGACCTGTTTA+AGG | + | chr7.1:17135358-17135377 | MS.gene38787:intron | 35.0% | |
| TCGATATTATGGACTTCAGA+GGG | + | chr7.1:17137276-17137295 | MS.gene38787:CDS | 35.0% | |
| TGTACTTGCATGCATTCTTA+GGG | - | chr7.1:17134464-17134483 | None:intergenic | 35.0% | |
| TTCAATTGATGAGTCAGGAA+TGG | + | chr7.1:17135009-17135028 | MS.gene38787:intron | 35.0% | |
| TTGCATCTGTTTGTAGCATT+CGG | - | chr7.1:17137252-17137271 | None:intergenic | 35.0% | |
| TTGTACTTGCATGCATTCTT+AGG | - | chr7.1:17134465-17134484 | None:intergenic | 35.0% | |
| TTGTTCACCAAGATGGATAA+TGG | + | chr7.1:17133794-17133813 | MS.gene38787:CDS | 35.0% | |
| TTTCTGAACCTACATTTGCA+GGG | + | chr7.1:17134606-17134625 | MS.gene38787:intron | 35.0% | |
| TTTGGATCCTCAGTATCTAT+AGG | + | chr7.1:17134577-17134596 | MS.gene38787:intron | 35.0% | |
| ! | ACATTAGCCTCTGACATAAA+TGG | + | chr7.1:17134946-17134965 | MS.gene38787:intron | 35.0% |
| ! | ATGACTTTTCTCTTACAAGG+TGG | - | chr7.1:17135342-17135361 | None:intergenic | 35.0% |
| ! | ATGGTAGTATTGGAAGGAAT+AGG | - | chr7.1:17137197-17137216 | None:intergenic | 35.0% |
| ! | CAATGACATTTTCAGCAACT+TGG | - | chr7.1:17135632-17135651 | None:intergenic | 35.0% |
| ! | TACAAGGTGGGATTTTCAAA+TGG | - | chr7.1:17135329-17135348 | None:intergenic | 35.0% |
| ! | TGACTTTTCTCTTACAAGGT+GGG | - | chr7.1:17135341-17135360 | None:intergenic | 35.0% |
| ! | TTGTTGGGTTTTGCAGATTT+TGG | + | chr7.1:17134096-17134115 | MS.gene38787:intron | 35.0% |
| !! | CAGATTTTGGTGGTTTTTAG+TGG | + | chr7.1:17134109-17134128 | MS.gene38787:intron | 35.0% |
| !! | CATCGTTGTTATTGCTGTTT+CGG | - | chr7.1:17133726-17133745 | None:intergenic | 35.0% |
| !! | CTAATGAGTGTTTGAGTTGT+TGG | + | chr7.1:17134080-17134099 | MS.gene38787:intron | 35.0% |
| AAAACCTCAACTTGGTAAGG+GGG | + | chr7.1:17134978-17134997 | MS.gene38787:intron | 40.0% | |
| AATCAAAACACACTGGAGTC+CGG | - | chr7.1:17136313-17136332 | None:intergenic | 40.0% | |
| AATCAATGTGGGATCTCAAC+AGG | - | chr7.1:17136943-17136962 | None:intergenic | 40.0% | |
| AGACCAGAATCAAAACACAC+TGG | - | chr7.1:17136320-17136339 | None:intergenic | 40.0% | |
| AGAGCTGGATTTCATCAGAA+GGG | - | chr7.1:17133895-17133914 | None:intergenic | 40.0% | |
| AGCAGTCCAAAACAGAAGAA+AGG | - | chr7.1:17135880-17135899 | None:intergenic | 40.0% | |
| AGGAACACCTATAGATACTG+AGG | - | chr7.1:17134587-17134606 | None:intergenic | 40.0% | |
| AGGGATAGTGAAAGTGAATG+GGG | + | chr7.1:17134135-17134154 | MS.gene38787:CDS | 40.0% | |
| ATACAACAGACATGGTTGAC+TGG | - | chr7.1:17135592-17135611 | None:intergenic | 40.0% | |
| ATCGATAGGTAACATGCATC+TGG | - | chr7.1:17137339-17137358 | None:intergenic | 40.0% | |
| ATGTTACCTATCGATGCGTT+TGG | + | chr7.1:17137344-17137363 | MS.gene38787:CDS | 40.0% | |
| ATTTCAGAAGGCTTGCAAAG+GGG | + | chr7.1:17135706-17135725 | MS.gene38787:intron | 40.0% | |
| CAAAACCTCAACTTGGTAAG+GGG | + | chr7.1:17134977-17134996 | MS.gene38787:intron | 40.0% | |
| CAGCATTCAATTGATGAGTC+AGG | + | chr7.1:17135004-17135023 | MS.gene38787:intron | 40.0% | |
| CAGGGATAGTGAAAGTGAAT+GGG | + | chr7.1:17134134-17134153 | MS.gene38787:CDS | 40.0% | |
| CAGGTCAGTCGATATAACTT+GGG | + | chr7.1:17136642-17136661 | MS.gene38787:intron | 40.0% | |
| CGAAACAGCAATAACAACGA+TGG | + | chr7.1:17133724-17133743 | MS.gene38787:CDS | 40.0% | |
| CGATATTATGGACTTCAGAG+GGG | + | chr7.1:17137277-17137296 | MS.gene38787:CDS | 40.0% | |
| CGTAAGATGGCTTATGCTAA+AGG | - | chr7.1:17135815-17135834 | None:intergenic | 40.0% | |
| CTACAACGTCTCATTCTGAA+TGG | + | chr7.1:17136274-17136293 | MS.gene38787:intron | 40.0% | |
| CTCGATATTATGGACTTCAG+AGG | + | chr7.1:17137275-17137294 | MS.gene38787:CDS | 40.0% | |
| CTGCAAATGTAGGTTCAGAA+AGG | - | chr7.1:17134607-17134626 | None:intergenic | 40.0% | |
| CTTTCTGAACCTACATTTGC+AGG | + | chr7.1:17134605-17134624 | MS.gene38787:intron | 40.0% | |
| CTTTGCTCCATTTATGTCAG+AGG | - | chr7.1:17134956-17134975 | None:intergenic | 40.0% | |
| GAAACCTCGCAAGTATACTT+TGG | + | chr7.1:17135093-17135112 | MS.gene38787:intron | 40.0% | |
| GAATGGCTTGACTTTGTATC+CGG | + | chr7.1:17136291-17136310 | MS.gene38787:intron | 40.0% | |
| GAATGTGGGATTAGAGACTA+TGG | - | chr7.1:17135763-17135782 | None:intergenic | 40.0% | |
| GACAAAACCTCAACTTGGTA+AGG | + | chr7.1:17134975-17134994 | MS.gene38787:intron | 40.0% | |
| GATATTATGGACTTCAGAGG+GGG | + | chr7.1:17137278-17137297 | MS.gene38787:CDS | 40.0% | |
| GATGATTTCCGGCAAATTCA+TGG | + | chr7.1:17133920-17133939 | MS.gene38787:CDS | 40.0% | |
| GATTTCAGAAGGCTTGCAAA+GGG | + | chr7.1:17135705-17135724 | MS.gene38787:intron | 40.0% | |
| GCAAAGACAAAACCTCAACT+TGG | + | chr7.1:17134970-17134989 | MS.gene38787:intron | 40.0% | |
| GCAGTCCAAAACAGAAGAAA+GGG | - | chr7.1:17135879-17135898 | None:intergenic | 40.0% | |
| TAGACCAAAGTATACTTGCG+AGG | - | chr7.1:17135100-17135119 | None:intergenic | 40.0% | |
| TATGTCAGAGGCTAATGTTG+TGG | - | chr7.1:17134944-17134963 | None:intergenic | 40.0% | |
| TCGATAGGTAACATGCATCT+GGG | - | chr7.1:17137338-17137357 | None:intergenic | 40.0% | |
| TGCACAGGAAAAATCAGCAT+TGG | - | chr7.1:17135567-17135586 | None:intergenic | 40.0% | |
| TGCATCTGTTTGTAGCATTC+GGG | - | chr7.1:17137251-17137270 | None:intergenic | 40.0% | |
| TGGCATGAGTAGCAGTAAAA+CGG | - | chr7.1:17133970-17133989 | None:intergenic | 40.0% | |
| TTGGATTTCCCTGCAAATGT+AGG | - | chr7.1:17134617-17134636 | None:intergenic | 40.0% | |
| ! | AAAACTAGGTATCTGGCTCA+AGG | + | chr7.1:17134052-17134071 | MS.gene38787:intron | 40.0% |
| ! | AATAGAAGTGCAGCACAAGA+TGG | - | chr7.1:17135849-17135868 | None:intergenic | 40.0% |
| ! | AGATTTTCAAATGTGTGGGC+TGG | + | chr7.1:17135683-17135702 | MS.gene38787:intron | 40.0% |
| ! | AGCTCTCTCTTGATGATTTC+CGG | + | chr7.1:17133909-17133928 | MS.gene38787:CDS | 40.0% |
| ! | ATCAAAGAGAGAGACCCTTT+TGG | - | chr7.1:17134002-17134021 | None:intergenic | 40.0% |
| ! | GCTGTTTATACTCTGGGAAA+TGG | + | chr7.1:17136707-17136726 | MS.gene38787:intron | 40.0% |
| ! | TGTATTGAAGCCAAAGCATC+AGG | + | chr7.1:17136563-17136582 | MS.gene38787:CDS | 40.0% |
| ! | TGTTTCTGACTGGAATCTGA+TGG | + | chr7.1:17134392-17134411 | MS.gene38787:intron | 40.0% |
| ! | TTCTGAGCTTTTGTAGACTC+TGG | - | chr7.1:17134792-17134811 | None:intergenic | 40.0% |
| ! | TTGCATGTTGTGTTTCTGAC+TGG | + | chr7.1:17134382-17134401 | MS.gene38787:intron | 40.0% |
| ! | TTGGGTTTTGCAGATTTTGG+TGG | + | chr7.1:17134099-17134118 | MS.gene38787:intron | 40.0% |
| !!! | ACTCCAGTGTGTTTTGATTC+TGG | + | chr7.1:17136314-17136333 | MS.gene38787:intron | 40.0% |
| AAACGGAGACGATCAACATC+AGG | - | chr7.1:17133953-17133972 | None:intergenic | 45.0% | |
| AAGATGTGGTGAGTTCACAG+AGG | - | chr7.1:17135904-17135923 | None:intergenic | 45.0% | |
| AAGTGAGTAGGGATGCTGTA+GGG | - | chr7.1:17136367-17136386 | None:intergenic | 45.0% | |
| AATGGGGTAAGAGACATAGC+AGG | + | chr7.1:17134151-17134170 | MS.gene38787:CDS | 45.0% | |
| ACAACGATGGAGATCGAAAG+CGG | + | chr7.1:17133737-17133756 | MS.gene38787:CDS | 45.0% | |
| ATGCATCTGGGTGATTTCAC+CGG | - | chr7.1:17137326-17137345 | None:intergenic | 45.0% | |
| ATTTCGTTCAGGCCTGAGAT+CGG | - | chr7.1:17136673-17136692 | None:intergenic | 45.0% | |
| CCAGGGATAGTGAAAGTGAA+TGG | + | chr7.1:17134133-17134152 | MS.gene38787:CDS | 45.0% | |
| CCATTCACTTTCACTATCCC+TGG | - | chr7.1:17134136-17134155 | None:intergenic | 45.0% | |
| CGAGATCCTAGATAGGATCA+AGG | - | chr7.1:17135998-17136017 | None:intergenic | 45.0% | |
| CTTGAGATGCTCAAAGACAG+AGG | + | chr7.1:17133860-17133879 | MS.gene38787:CDS | 45.0% | |
| CTTGCAAAGGGGACAAAATG+TGG | + | chr7.1:17135717-17135736 | MS.gene38787:intron | 45.0% | |
| GACGATCAACATCAGGAGAT+TGG | - | chr7.1:17133946-17133965 | None:intergenic | 45.0% | |
| GAGAGCTGGATTTCATCAGA+AGG | - | chr7.1:17133896-17133915 | None:intergenic | 45.0% | |
| GCAAGTTAGACAACCATGCT+TGG | + | chr7.1:17135203-17135222 | MS.gene38787:intron | 45.0% | |
| GCAGGTCAGTCGATATAACT+TGG | + | chr7.1:17136641-17136660 | MS.gene38787:intron | 45.0% | |
| GCATCTGTTTGTAGCATTCG+GGG | - | chr7.1:17137250-17137269 | None:intergenic | 45.0% | |
| GGAAATCATCAAGAGAGAGC+TGG | - | chr7.1:17133910-17133929 | None:intergenic | 45.0% | |
| GGATTTCAGAAGGCTTGCAA+AGG | + | chr7.1:17135704-17135723 | MS.gene38787:intron | 45.0% | |
| GTGAACAGAGACAGTTTGAC+TGG | + | chr7.1:17134181-17134200 | MS.gene38787:CDS | 45.0% | |
| TCAGTCAACACCTGATGCTT+TGG | - | chr7.1:17136576-17136595 | None:intergenic | 45.0% | |
| ! | AAAGAGAGAGACCCTTTTGG+AGG | - | chr7.1:17133999-17134018 | None:intergenic | 45.0% |
| ! | AAGAGAGAGACCCTTTTGGA+GGG | - | chr7.1:17133998-17134017 | None:intergenic | 45.0% |
| ! | GAGATTGGCCATGAATTTGC+CGG | - | chr7.1:17133931-17133950 | None:intergenic | 45.0% |
| ! | TGCGACCCTTTCTTCTGTTT+TGG | + | chr7.1:17135871-17135890 | MS.gene38787:intron | 45.0% |
| !! | CGTTGTTATTGCTGTTTCGG+TGG | - | chr7.1:17133723-17133742 | None:intergenic | 45.0% |
| !!! | TTTTTTATAATATTTTTTGT+GGG | + | chr7.1:17134337-17134356 | MS.gene38787:intron | 5.0% |
| !!! | TTTTTTTATAATATTTTTTG+TGG | + | chr7.1:17134336-17134355 | MS.gene38787:intron | 5.0% |
| ATGCCACTAACCCCTCCAAA+AGG | + | chr7.1:17133984-17134003 | MS.gene38787:CDS | 50.0% | |
| CAAGTGAGTAGGGATGCTGT+AGG | - | chr7.1:17136368-17136387 | None:intergenic | 50.0% | |
| GATGGCTTATGCTAAAGGGC+TGG | - | chr7.1:17135810-17135829 | None:intergenic | 50.0% | |
| GTTTCCCCCTTACCAAGTTG+AGG | - | chr7.1:17134985-17135004 | None:intergenic | 50.0% | |
| TGCCACTAACCCCTCCAAAA+GGG | + | chr7.1:17133985-17134004 | MS.gene38787:CDS | 50.0% | |
| !! | AGAGAGAGACCCTTTTGGAG+GGG | - | chr7.1:17133997-17134016 | None:intergenic | 50.0% |
| !! | TGTGTGGGCTGGATTTCAGA+AGG | + | chr7.1:17135694-17135713 | MS.gene38787:intron | 50.0% |
| !!! | TGGTGGTTTTTAGTGGGCCA+GGG | + | chr7.1:17134116-17134135 | MS.gene38787:CDS | 50.0% |
| !!! | TTGGTGGTTTTTAGTGGGCC+AGG | + | chr7.1:17134115-17134134 | MS.gene38787:CDS | 50.0% |
| ACTTGGGAAGAGCCGATCTC+AGG | + | chr7.1:17136658-17136677 | MS.gene38787:intron | 55.0% | |
| CATGGTTGACTGGTGTGCAC+AGG | - | chr7.1:17135582-17135601 | None:intergenic | 55.0% | |
| CTGGGTGATTTCACCGGTGT+AGG | - | chr7.1:17137320-17137339 | None:intergenic | 55.0% | |
| GCGAGGTTTCATGCAGCACA+AGG | - | chr7.1:17135083-17135102 | None:intergenic | 55.0% | |
| TTATGGACTTCAGAGGGGGC+AGG | + | chr7.1:17137282-17137301 | MS.gene38787:CDS | 55.0% | |
| !! | ATGCTAAAGGGCTGGTCGCT+GGG | - | chr7.1:17135802-17135821 | None:intergenic | 55.0% |
| !! | GACCCTTTTGGAGGGGTTAG+TGG | - | chr7.1:17133990-17134009 | None:intergenic | 55.0% |
| !! | TATGCTAAAGGGCTGGTCGC+TGG | - | chr7.1:17135803-17135822 | None:intergenic | 55.0% |
| !! | TCGCGCACAGACTCGGTTTT+TGG | - | chr7.1:17135133-17135152 | None:intergenic | 55.0% |
| GATTCGCTCGCGCACAGACT+CGG | - | chr7.1:17135140-17135159 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 17133689 | 17137369 | 17133689 | ID=MS.gene38787 |
| chr7.1 | mRNA | 17133689 | 17137369 | 17133689 | ID=MS.gene38787.t1;Parent=MS.gene38787 |
| chr7.1 | exon | 17133689 | 17134006 | 17133689 | ID=MS.gene38787.t1.exon1;Parent=MS.gene38787.t1 |
| chr7.1 | CDS | 17133689 | 17134006 | 17133689 | ID=cds.MS.gene38787.t1;Parent=MS.gene38787.t1 |
| chr7.1 | exon | 17134112 | 17134288 | 17134112 | ID=MS.gene38787.t1.exon2;Parent=MS.gene38787.t1 |
| chr7.1 | CDS | 17134112 | 17134288 | 17134112 | ID=cds.MS.gene38787.t1;Parent=MS.gene38787.t1 |
| chr7.1 | exon | 17136531 | 17136644 | 17136531 | ID=MS.gene38787.t1.exon3;Parent=MS.gene38787.t1 |
| chr7.1 | CDS | 17136531 | 17136644 | 17136531 | ID=cds.MS.gene38787.t1;Parent=MS.gene38787.t1 |
| chr7.1 | exon | 17137244 | 17137369 | 17137244 | ID=MS.gene38787.t1.exon4;Parent=MS.gene38787.t1 |
| chr7.1 | CDS | 17137244 | 17137369 | 17137244 | ID=cds.MS.gene38787.t1;Parent=MS.gene38787.t1 |
| Gene Sequence |
| Protein sequence |
