AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57185

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57185.t1 MTR_5g016220 91.843 331 25 1 1 329 1 331 0.0 620
MS.gene57185.t1 MTR_5g016200 90.547 201 16 1 125 325 2 199 6.89e-131 371
MS.gene57185.t1 MTR_5g016200 79.365 126 22 2 1 124 1 124 2.73e-61 194
MS.gene57185.t1 MTR_5g005470 80.000 205 41 0 125 329 2 206 1.65e-121 348
MS.gene57185.t1 MTR_5g005470 73.228 127 31 2 1 124 1 127 2.04e-57 184
MS.gene57185.t1 MTR_6g042230 62.255 204 76 1 126 329 3 205 2.57e-83 251
MS.gene57185.t1 MTR_6g042230 48.872 133 63 2 1 131 1 130 3.59e-31 116
MS.gene57185.t1 MTR_6g088010 55.825 206 89 1 125 328 2 207 3.93e-79 240
MS.gene57185.t1 MTR_6g088010 47.368 133 68 1 1 131 1 133 6.90e-31 116
MS.gene57185.t1 MTR_6g088020 55.825 206 89 1 125 328 2 207 1.50e-76 234
MS.gene57185.t1 MTR_6g088020 43.609 133 73 1 1 131 1 133 2.20e-26 104
MS.gene57185.t1 MTR_7g090220 37.500 200 122 2 130 328 50 247 1.25e-39 140
MS.gene57185.t1 MTR_3g058520 50.769 65 31 1 253 317 95 158 6.84e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57185.t1 AT3G22320 65.854 205 70 0 125 329 1 205 5.68e-100 293
MS.gene57185.t1 AT3G22320 55.556 126 53 2 2 124 1 126 4.43e-40 140
MS.gene57185.t1 AT5G57980 43.689 206 112 2 128 329 5 210 2.77e-56 182
MS.gene57185.t1 AT5G57980 33.071 127 78 4 5 124 5 131 9.69e-17 78.2
MS.gene57185.t1 AT2G41340 40.394 203 118 2 127 328 17 217 6.21e-45 153
MS.gene57185.t1 AT3G57080 35.023 217 138 2 113 328 7 221 5.82e-40 140
MS.gene57185.t1 AT3G54490 32.338 201 133 2 130 329 35 233 4.90e-31 117
MS.gene57185.t1 AT2G41340 36.313 179 102 3 127 304 17 184 5.78e-29 110
MS.gene57185.t1 AT2G41340 38.650 163 97 2 127 288 17 177 9.28e-29 109
MS.gene57185.t1 AT3G16680 44.156 77 41 1 207 281 2 78 6.62e-14 67.0

Find 82 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGTTGGCGTCCAGACTTTC+AGG 0.249538 5.3:-9041524 MS.gene57185:CDS
ACATACCGATTTGTTGTCTA+AGG 0.261902 5.3:-9040549 None:intergenic
CAAGAGTTCAAGGAGAAATA+TGG 0.263586 5.3:-9041639 MS.gene57185:CDS
GGATCCCTCACCTGGATTCT+AGG 0.310631 5.3:+9040651 None:intergenic
GATCCTGTTGCAAGATATTA+TGG 0.316385 5.3:-9040633 MS.gene57185:CDS
CCAGATTTATGTCTTCTTCC+CGG 0.347022 5.3:-9041556 MS.gene57185:CDS
TCAGTCAGCACCTGATGTTC+TGG 0.354438 5.3:+9041236 None:intergenic
CTTGCAGGAGGCTGAATTGC+TGG 0.356558 5.3:-9041285 MS.gene57185:intron
ACATGTTAGTAAGGCTGTTC+TGG 0.357577 5.3:+9041448 None:intergenic
ATGAAATAATGAAGCTGTAT+AGG 0.373700 5.3:-9042106 MS.gene57185:CDS
AATCGCCTCCAAATTTCATT+TGG 0.374113 5.3:-9041784 MS.gene57185:CDS
GTTTGCCTCCAAATTTCATT+TGG 0.384993 5.3:-9041406 MS.gene57185:CDS
ACGTTTGGTGTAAGTCCTTA+AGG 0.390806 5.3:+9041884 None:intergenic
ACTGACCTGAGTTTCTTTAA+CGG 0.397368 5.3:+9041181 None:intergenic
GCATCTCCATCACTGTCTTC+CGG 0.401574 5.3:+9041712 None:intergenic
ATTCTCGGAGTTCATACATT+TGG 0.404913 5.3:+9041494 None:intergenic
AAGAGTTCAAGGAGAAATAT+GGG 0.406548 5.3:-9041638 MS.gene57185:CDS
CAAGCTTGTGCCAGAACATC+AGG 0.413166 5.3:-9041246 MS.gene57185:CDS
CATGTCCAAGCAAGAGTTCA+AGG 0.415521 5.3:-9041649 MS.gene57185:CDS
TAATGAAGCTGTATAGGATC+TGG 0.428962 5.3:-9042100 MS.gene57185:CDS
CCGCTTTAGTAAGGCTGGTC+TGG 0.431731 5.3:+9041823 None:intergenic
ATGCCATAATATCTTGCAAC+AGG 0.434750 5.3:+9040630 None:intergenic
ATGAAATATCGAAGCTGTAT+AGG 0.436885 5.3:-9041737 MS.gene57185:CDS
TTTCTCCTTGAACTCTTGCT+TGG 0.437286 5.3:+9041644 None:intergenic
CGCCAACCTTGTCATTCAAC+GGG 0.438451 5.3:+9041913 None:intergenic
AGGTTGGCGTCCACACCTTA+AGG 0.442532 5.3:-9041899 MS.gene57185:CDS
TTGCAACAGGATCCCTCACC+TGG 0.449627 5.3:+9040643 None:intergenic
ACGCCAACCTTGTCATCCTC+CGG 0.452689 5.3:+9041537 None:intergenic
TGGTGTAAGTCCTGAAAGTC+TGG 0.460414 5.3:+9041514 None:intergenic
GACAAGTTGTCAAGATAATC+CGG 0.473708 5.3:-9040599 MS.gene57185:CDS
ACGGGAAGAACACATAAATC+TGG 0.480965 5.3:+9041931 None:intergenic
GATGGCTCTGTAGACATTCT+CGG 0.488016 5.3:+9041479 None:intergenic
GATGGCTCTGTAGACATTCT+CGG 0.488016 5.3:+9041854 None:intergenic
TTCCTGCAGTCTCACTTGGC+CGG 0.488931 5.3:+9040580 None:intergenic
AGTCCCGTGCCGCTTTAGTA+AGG 0.491272 5.3:+9041814 None:intergenic
TATCGAAGCTGTATAGGATC+CGG 0.503346 5.3:-9041731 MS.gene57185:CDS
GCTGTTCTGGCAAACGATGA+TGG 0.506683 5.3:+9041461 None:intergenic
GCTGGTCTGGCAAACGATGA+TGG 0.506683 5.3:+9041836 None:intergenic
ATTCTCGGAGTCCATACGTT+TGG 0.507587 5.3:+9041869 None:intergenic
CCGGGAAGAAGACATAAATC+TGG 0.508593 5.3:+9041556 None:intergenic
CCGTGCCGCTTTAGTAAGGC+TGG 0.511251 5.3:+9041818 None:intergenic
TGTTCCATGACATGTTAGTA+AGG 0.511336 5.3:+9041439 None:intergenic
AACTTCCAAATGAAATTTGG+AGG 0.512170 5.3:+9041401 None:intergenic
AACTTCCAAATGAAATTTGG+AGG 0.512170 5.3:+9041779 None:intergenic
TAGGATCTGGAAGAAGGTGA+TGG 0.515671 5.3:-9042087 MS.gene57185:CDS
CAGCCTTACTAAAGCGGCAC+GGG 0.515723 5.3:-9041817 MS.gene57185:CDS
GGTTAACATACAAGACTTCA+AGG 0.520090 5.3:-9042024 MS.gene57185:CDS
TGATGGAGATGCTTCGTGAC+AGG 0.522662 5.3:-9041701 MS.gene57185:CDS
TGATGGAGATGCTTCGCGAC+AGG 0.523509 5.3:-9042070 MS.gene57185:CDS
TATCTTCCTGCAGTCTCACT+TGG 0.525204 5.3:+9040576 None:intergenic
CGCCAACCTTGTCATCCTCC+GGG 0.525327 5.3:+9041538 None:intergenic
ATCTCAGCTGCCTAGAATCC+AGG 0.526579 5.3:-9040661 MS.gene57185:intron
GAAATCCTTAGACAACAAAT+CGG 0.526850 5.3:+9040544 None:intergenic
TTCCCGGAGGATGACAAGGT+TGG 0.531846 5.3:-9041540 MS.gene57185:CDS
TTACCTCGTAGAAGATTTCG+AGG 0.547378 5.3:-9042045 MS.gene57185:CDS
GCTGTATAGGATCTGGAAGA+AGG 0.551009 5.3:-9042093 MS.gene57185:CDS
CCAGACCAGCCTTACTAAAG+CGG 0.552518 5.3:-9041823 MS.gene57185:CDS
ACGCCAACCTTGTCATTCAA+CGG 0.558382 5.3:+9041912 None:intergenic
TTCCCGTTGAATGACAAGGT+TGG 0.562118 5.3:-9041915 MS.gene57185:CDS
CTTCTTCCCGGAGGATGACA+AGG 0.570040 5.3:-9041544 MS.gene57185:CDS
AACACATAAATCTGGTCAGA+GGG 0.577483 5.3:+9041939 None:intergenic
AGATATTATGGCATGAAGCG+TGG 0.584475 5.3:-9040621 MS.gene57185:CDS
ACAGCCTTACTAACATGTCA+TGG 0.590641 5.3:-9041443 MS.gene57185:CDS
AAGACATAAATCTGGTCAGA+GGG 0.592633 5.3:+9041564 None:intergenic
ATCCGGCCAAGTGAGACTGC+AGG 0.593487 5.3:-9040582 MS.gene57185:CDS
AAGGACTTACACCAAACGTA+TGG 0.593798 5.3:-9041880 MS.gene57185:CDS
TGGTGTAAGTCCTTAAGGTG+TGG 0.594467 5.3:+9041889 None:intergenic
CAAGACTTCAAGGAGAAGTA+CGG 0.597427 5.3:-9042014 MS.gene57185:CDS
AGCTGCCTAGAATCCAGGTG+AGG 0.614847 5.3:-9040656 MS.gene57185:CDS
TAGGATCCGGAAGACAGTGA+TGG 0.617671 5.3:-9041718 MS.gene57185:CDS
ATACACCGTTAAAGAAACTC+AGG 0.619813 5.3:-9041186 MS.gene57185:intron
GCTGCCTAGAATCCAGGTGA+GGG 0.628324 5.3:-9040655 MS.gene57185:CDS
GTTCTTCCCGTTGAATGACA+AGG 0.631293 5.3:-9041919 MS.gene57185:CDS
GAAGACATAAATCTGGTCAG+AGG 0.641158 5.3:+9041563 None:intergenic
CCAGCCTTACTAAAGCGGCA+CGG 0.649264 5.3:-9041818 MS.gene57185:CDS
GAACACATAAATCTGGTCAG+AGG 0.650182 5.3:+9041938 None:intergenic
AGAGTTCAAGGAGAAATATG+GGG 0.671436 5.3:-9041637 MS.gene57185:CDS
CGTGACAGGAATTACCTCGT+AGG 0.675089 5.3:-9041687 MS.gene57185:CDS
GATTTATGTCTTCTTCCCGG+AGG 0.681678 5.3:-9041553 MS.gene57185:CDS
AGAAGACCTTGTCATCAACA+AGG 0.684606 5.3:-9041601 MS.gene57185:CDS
TAACCTCAAAATCTCCTACG+AGG 0.757108 5.3:+9041673 None:intergenic
TAACCTCGAAATCTTCTACG+AGG 0.763929 5.3:+9042042 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCACTATATCTAATATTTA+TGG - chr5.3:9041984-9042003 MS.gene57185:CDS 15.0%
!! AAAAACTTCCAAATGAAATT+TGG + chr5.3:9040900-9040919 None:intergenic 20.0%
!! GAATGAGTAAAGTTATATAA+TGG - chr5.3:9041563-9041582 MS.gene57185:CDS 20.0%
!! GATGTATTCTAATTTAGATT+TGG - chr5.3:9041679-9041698 MS.gene57185:CDS 20.0%
!! GTCAGTTATAAAAAAAATTG+TGG - chr5.3:9041509-9041528 MS.gene57185:CDS 20.0%
!!! GATCAATCAATCAAATTTTA+TGG - chr5.3:9041315-9041334 MS.gene57185:intron 20.0%
! AGATAATATGCAAACAAGAA+CGG + chr5.3:9041912-9041931 None:intergenic 25.0%
! ATGAAATAATGAAGCTGTAT+AGG - chr5.3:9040567-9040586 MS.gene57185:CDS 25.0%
! TATATAATGGTATTTCACCT+AGG - chr5.3:9041576-9041595 MS.gene57185:CDS 25.0%
! TTTATTTGCATGAAATACAG+TGG + chr5.3:9041741-9041760 None:intergenic 25.0%
!! AATTTTATGGTGGTTGTTAA+TGG - chr5.3:9041328-9041347 MS.gene57185:intron 25.0%
!! ATTTCATTTGGAAGTTTTTC+AGG - chr5.3:9040901-9040920 MS.gene57185:intron 25.0%
!! CAATCAATCAAATTTTATGG+TGG - chr5.3:9041318-9041337 MS.gene57185:intron 25.0%
!! GCTTTTGAATCTATTTACAT+TGG - chr5.3:9041833-9041852 MS.gene57185:CDS 25.0%
!! TTTTAACCTTTCTTCTTTCA+TGG - chr5.3:9041643-9041662 MS.gene57185:CDS 25.0%
AAATAGATTCAAAAGCTCTC+AGG + chr5.3:9041829-9041848 None:intergenic 30.0%
AACTTCCAAATGAAATTTGG+AGG + chr5.3:9040897-9040916 None:intergenic 30.0%
AAGAGTTCAAGGAGAAATAT+GGG - chr5.3:9041035-9041054 MS.gene57185:intron 30.0%
ATCTGACAAACTTTCACTAT+AGG + chr5.3:9041782-9041801 None:intergenic 30.0%
ATGAAATATCGAAGCTGTAT+AGG - chr5.3:9040936-9040955 MS.gene57185:intron 30.0%
CTGCTTTAATCTTTGTCTAA+TGG - chr5.3:9041881-9041900 MS.gene57185:CDS 30.0%
TTAGAATACATCGATCATCA+TGG + chr5.3:9041671-9041690 None:intergenic 30.0%
! GGAAGTTTTTCATGTGTTTT+CGG - chr5.3:9040910-9040929 MS.gene57185:intron 30.0%
! TTTACATTGGATAGTTCTAC+TGG - chr5.3:9041846-9041865 MS.gene57185:CDS 30.0%
!! CAGAAATTTTTCAAATGCCT+AGG + chr5.3:9041596-9041615 None:intergenic 30.0%
AACACATAAATCTGGTCAGA+GGG + chr5.3:9040737-9040756 None:intergenic 35.0%
AAGACATAAATCTGGTCAGA+GGG + chr5.3:9041112-9041131 None:intergenic 35.0%
AATCGCCTCCAAATTTCATT+TGG - chr5.3:9040889-9040908 MS.gene57185:intron 35.0%
ACTGACCTGAGTTTCTTTAA+CGG + chr5.3:9041495-9041514 None:intergenic 35.0%
AGAGTTCAAGGAGAAATATG+GGG - chr5.3:9041036-9041055 MS.gene57185:intron 35.0%
ATACACCGTTAAAGAAACTC+AGG - chr5.3:9041487-9041506 MS.gene57185:CDS 35.0%
ATGCCATAATATCTTGCAAC+AGG + chr5.3:9042046-9042065 None:intergenic 35.0%
ATGGAACCATGAAAGAAGAA+AGG + chr5.3:9041652-9041671 None:intergenic 35.0%
ATTCTCGGAGTTCATACATT+TGG + chr5.3:9041182-9041201 None:intergenic 35.0%
CAAGAGTTCAAGGAGAAATA+TGG - chr5.3:9041034-9041053 MS.gene57185:intron 35.0%
GACAAGTTGTCAAGATAATC+CGG - chr5.3:9042074-9042093 MS.gene57185:CDS 35.0%
GATCCTGTTGCAAGATATTA+TGG - chr5.3:9042040-9042059 MS.gene57185:CDS 35.0%
GGTTAACATACAAGACTTCA+AGG - chr5.3:9040649-9040668 MS.gene57185:CDS 35.0%
GTTTGCCTCCAAATTTCATT+TGG - chr5.3:9041267-9041286 MS.gene57185:CDS 35.0%
TAATGAAGCTGTATAGGATC+TGG - chr5.3:9040573-9040592 MS.gene57185:CDS 35.0%
TGTTCCATGACATGTTAGTA+AGG + chr5.3:9041237-9041256 None:intergenic 35.0%
! AAATTGTACTGACACTGACA+TGG - chr5.3:9041961-9041980 MS.gene57185:CDS 35.0%
! AGTTTTTCATGTGTTTTCGG+AGG - chr5.3:9040913-9040932 MS.gene57185:intron 35.0%
!!! TTTTGGCTTTCTTGATGACA+AGG + chr5.3:9040706-9040725 None:intergenic 35.0%
AAGGACTTACACCAAACGTA+TGG - chr5.3:9040793-9040812 MS.gene57185:intron 40.0%
ACAGCCTTACTAACATGTCA+TGG - chr5.3:9041230-9041249 MS.gene57185:CDS 40.0%
ACATGTTAGTAAGGCTGTTC+TGG + chr5.3:9041228-9041247 None:intergenic 40.0%
ACGGGAAGAACACATAAATC+TGG + chr5.3:9040745-9040764 None:intergenic 40.0%
AGAAGACCTTGTCATCAACA+AGG - chr5.3:9041072-9041091 MS.gene57185:intron 40.0%
AGATATTATGGCATGAAGCG+TGG - chr5.3:9042052-9042071 MS.gene57185:CDS 40.0%
ATGGTGGTTGTTAATGGTTG+AGG - chr5.3:9041334-9041353 MS.gene57185:intron 40.0%
CAAGACTTCAAGGAGAAGTA+CGG - chr5.3:9040659-9040678 MS.gene57185:intron 40.0%
CCAGATTTATGTCTTCTTCC+CGG - chr5.3:9041117-9041136 MS.gene57185:intron 40.0%
GAACACATAAATCTGGTCAG+AGG + chr5.3:9040738-9040757 None:intergenic 40.0%
GAAGACATAAATCTGGTCAG+AGG + chr5.3:9041113-9041132 None:intergenic 40.0%
TAACCTCAAAATCTCCTACG+AGG + chr5.3:9041003-9041022 None:intergenic 40.0%
TAACCTCGAAATCTTCTACG+AGG + chr5.3:9040634-9040653 None:intergenic 40.0%
TATCGAAGCTGTATAGGATC+CGG - chr5.3:9040942-9040961 MS.gene57185:intron 40.0%
TTACCTCGTAGAAGATTTCG+AGG - chr5.3:9040628-9040647 MS.gene57185:CDS 40.0%
TTTCTCCTTGAACTCTTGCT+TGG + chr5.3:9041032-9041051 None:intergenic 40.0%
! TTACCTCGTAGGAGATTTTG+AGG - chr5.3:9040997-9041016 MS.gene57185:intron 40.0%
!! ACGTTTGGTGTAAGTCCTTA+AGG + chr5.3:9040792-9040811 None:intergenic 40.0%
!!! GTCAGAGGGATTGTCTTTTT+TGG + chr5.3:9040723-9040742 None:intergenic 40.0%
!!! TTTTGGCCTTGTTGATGACA+AGG + chr5.3:9041081-9041100 None:intergenic 40.0%
ACGCCAACCTTGTCATTCAA+CGG + chr5.3:9040764-9040783 None:intergenic 45.0%
ATTCTCGGAGTCCATACGTT+TGG + chr5.3:9040807-9040826 None:intergenic 45.0%
CATGTCCAAGCAAGAGTTCA+AGG - chr5.3:9041024-9041043 MS.gene57185:intron 45.0%
CCGGGAAGAAGACATAAATC+TGG + chr5.3:9041120-9041139 None:intergenic 45.0%
GATTTATGTCTTCTTCCCGG+AGG - chr5.3:9041120-9041139 MS.gene57185:intron 45.0%
GCACACACACACACTAACAA+CGG + chr5.3:9041363-9041382 None:intergenic 45.0%
GCTGTATAGGATCTGGAAGA+AGG - chr5.3:9040580-9040599 MS.gene57185:CDS 45.0%
GTTCTTCCCGTTGAATGACA+AGG - chr5.3:9040754-9040773 MS.gene57185:intron 45.0%
TAGGATCTGGAAGAAGGTGA+TGG - chr5.3:9040586-9040605 MS.gene57185:CDS 45.0%
TATCTTCCTGCAGTCTCACT+TGG + chr5.3:9042100-9042119 None:intergenic 45.0%
TGGTGTAAGTCCTGAAAGTC+TGG + chr5.3:9041162-9041181 None:intergenic 45.0%
TGGTGTAAGTCCTTAAGGTG+TGG + chr5.3:9040787-9040806 None:intergenic 45.0%
TTCCCGTTGAATGACAAGGT+TGG - chr5.3:9040758-9040777 MS.gene57185:intron 45.0%
! GATGGCTCTGTAGACATTCT+CGG + chr5.3:9040822-9040841 None:intergenic 45.0%
ATCTCAGCTGCCTAGAATCC+AGG - chr5.3:9042012-9042031 MS.gene57185:CDS 50.0%
CAAGCTTGTGCCAGAACATC+AGG - chr5.3:9041427-9041446 MS.gene57185:CDS 50.0%
CCAGACCAGCCTTACTAAAG+CGG - chr5.3:9040850-9040869 MS.gene57185:intron 50.0%
CGCCAACCTTGTCATTCAAC+GGG + chr5.3:9040763-9040782 None:intergenic 50.0%
CGTGACAGGAATTACCTCGT+AGG - chr5.3:9040986-9041005 MS.gene57185:intron 50.0%
GCATCTCCATCACTGTCTTC+CGG + chr5.3:9040964-9040983 None:intergenic 50.0%
GCTGTTCTGGCAAACGATGA+TGG + chr5.3:9041215-9041234 None:intergenic 50.0%
TAGGATCCGGAAGACAGTGA+TGG - chr5.3:9040955-9040974 MS.gene57185:intron 50.0%
TCAGGACAAGCGAACGACAA+GGG + chr5.3:9041811-9041830 None:intergenic 50.0%
TCAGTCAGCACCTGATGTTC+TGG + chr5.3:9041440-9041459 None:intergenic 50.0%
TGATGGAGATGCTTCGTGAC+AGG - chr5.3:9040972-9040991 MS.gene57185:intron 50.0%
ACGCCAACCTTGTCATCCTC+CGG + chr5.3:9041139-9041158 None:intergenic 55.0%
AGCTGCCTAGAATCCAGGTG+AGG - chr5.3:9042017-9042036 MS.gene57185:CDS 55.0%
AGGTTGGCGTCCACACCTTA+AGG - chr5.3:9040774-9040793 MS.gene57185:intron 55.0%
AGGTTGGCGTCCAGACTTTC+AGG - chr5.3:9041149-9041168 MS.gene57185:intron 55.0%
CAGCCTTACTAAAGCGGCAC+GGG - chr5.3:9040856-9040875 MS.gene57185:intron 55.0%
CCAGCCTTACTAAAGCGGCA+CGG - chr5.3:9040855-9040874 MS.gene57185:intron 55.0%
CTCAGGACAAGCGAACGACA+AGG + chr5.3:9041812-9041831 None:intergenic 55.0%
CTTCTTCCCGGAGGATGACA+AGG - chr5.3:9041129-9041148 MS.gene57185:intron 55.0%
CTTGCAGGAGGCTGAATTGC+TGG - chr5.3:9041388-9041407 MS.gene57185:intron 55.0%
GCTGCCTAGAATCCAGGTGA+GGG - chr5.3:9042018-9042037 MS.gene57185:CDS 55.0%
GGATCCCTCACCTGGATTCT+AGG + chr5.3:9042025-9042044 None:intergenic 55.0%
TGATGGAGATGCTTCGCGAC+AGG - chr5.3:9040603-9040622 MS.gene57185:CDS 55.0%
TTCCCGGAGGATGACAAGGT+TGG - chr5.3:9041133-9041152 MS.gene57185:intron 55.0%
TTCCTGCAGTCTCACTTGGC+CGG + chr5.3:9042096-9042115 None:intergenic 55.0%
TTGCAACAGGATCCCTCACC+TGG + chr5.3:9042033-9042052 None:intergenic 55.0%
! CCGCTTTAGTAAGGCTGGTC+TGG + chr5.3:9040853-9040872 None:intergenic 55.0%
! GCTGGTCTGGCAAACGATGA+TGG + chr5.3:9040840-9040859 None:intergenic 55.0%
!! AGTCCCGTGCCGCTTTAGTA+AGG + chr5.3:9040862-9040881 None:intergenic 55.0%
ATCCGGCCAAGTGAGACTGC+AGG - chr5.3:9042091-9042110 MS.gene57185:CDS 60.0%
CGCCAACCTTGTCATCCTCC+GGG + chr5.3:9041138-9041157 None:intergenic 60.0%
!! CCGTGCCGCTTTAGTAAGGC+TGG + chr5.3:9040858-9040877 None:intergenic 60.0%
GTGTGTGTGCGCGCGCTTGC+AGG - chr5.3:9041373-9041392 MS.gene57185:intron 70.0%
TGTGTGCGCGCGCTTGCAGG+AGG - chr5.3:9041376-9041395 MS.gene57185:intron 70.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 9040551 9042144 9040551 ID=MS.gene57185
chr5.3 mRNA 9040551 9042144 9040551 ID=MS.gene57185.t1;Parent=MS.gene57185
chr5.3 exon 9041395 9042144 9041395 ID=MS.gene57185.t1.exon1;Parent=MS.gene57185.t1
chr5.3 CDS 9041395 9042144 9041395 ID=cds.MS.gene57185.t1;Parent=MS.gene57185.t1
chr5.3 exon 9041187 9041300 9041187 ID=MS.gene57185.t1.exon2;Parent=MS.gene57185.t1
chr5.3 CDS 9041187 9041300 9041187 ID=cds.MS.gene57185.t1;Parent=MS.gene57185.t1
chr5.3 exon 9040551 9040676 9040551 ID=MS.gene57185.t1.exon3;Parent=MS.gene57185.t1
chr5.3 CDS 9040551 9040676 9040551 ID=cds.MS.gene57185.t1;Parent=MS.gene57185.t1
Gene Sequence

>MS.gene57185

ATGGTGTTTTCGGAGGATGAAATAATGAAGCTGTATAGGATCTGGAAGAAGGTGATGGAGATGCTTCGCGACAGGAATTACCTCGTAGAAGATTTCGAGGTTAACATACAAGACTTCAAGGAGAAGTACGGTGAGAATGTGAAGAGAGAAGACCTTGTCATCAAGAAAGCCAAAAAAGACAATCCCTCTGACCAGATTTATGTGTTCTTCCCGTTGAATGACAAGGTTGGCGTCCACACCTTAAGGACTTACACCAAACGTATGGACTCCGAGAATGTCTACAGAGCCATCATCGTTTGCCAGACCAGCCTTACTAAAGCGGCACGGGACTTCTCTGAAATCGCCTCCAAATTTCATTTGGAAGTTTTTCATGTGTTTTCGGAGGATGAAATATCGAAGCTGTATAGGATCCGGAAGACAGTGATGGAGATGCTTCGTGACAGGAATTACCTCGTAGGAGATTTTGAGGTTAACATGTCCAAGCAAGAGTTCAAGGAGAAATATGGGGAGCACATGAAGAGAGAAGACCTTGTCATCAACAAGGCCAAAAAAGACAATCCCTCTGACCAGATTTATGTCTTCTTCCCGGAGGATGACAAGGTTGGCGTCCAGACTTTCAGGACTTACACCAAATGTATGAACTCCGAGAATGTCTACAGAGCCATCATCGTTTGCCAGAACAGCCTTACTAACATGTCATGGAACAGTATCTCTCAGTTTGCCTCCAAATTTCATTTGGAAGTTTTTCAGGTAATTCATCAGTCGATCAATCAATCAAATTTTATGGTGGTTGTTAATGGTTGAGGTAACCGTTGTTAGTGTGTGTGTGTGCGCGCGCTTGCAGGAGGCTGAATTGCTGGTTAATGTAAGATATCACAAGCTTGTGCCAGAACATCAGGTGCTGACTGACAATGAGAAGAAATCAGTACTTGAGAGATACACCGTTAAAGAAACTCAGGTCAGTTATAAAAAAAATTGTGGAAATTTTGTGTTATTTAGAATGTGACTAATCGAATGAGTAAAGTTATATAATGGTATTTCACCTAGGCATTTGAAAAATTTCTGCACGTGCACAAGTGCTTCATCTCTGATTTTTAACCTTTCTTCTTTCATGGTTCCATGATGATCGATGTATTCTAATTTAGATTTGGATGTAATTAAGCATGCATGAAAAGTAAAATTAGCATCCACTGTATTTCATGCAAATAAAACTTCTTCATTGTTTATTCCTATAGTGAAAGTTTGTCAGATTTGTCACCCTTGTCGTTCGCTTGTCCTGAGAGCTTTTGAATCTATTTACATTGGATAGTTCTACTGGTTTTAGTGTTTACTGCTTTAATCTTTGTCTAATGGATGTACCGTTCTTGTTTGCATATTATCTCGTATTTGCAATTGTATCATTTTACTACAAAATTGTACTGACACTGACATGGTTCACTATATCTAATATTTATGGTCTGTATCTCAGCTGCCTAGAATCCAGGTGAGGGATCCTGTTGCAAGATATTATGGCATGAAGCGTGGACAAGTTGTCAAGATAATCCGGCCAAGTGAGACTGCAGGAAGATATGTTACATACCGATTTGTTGTCTAA
Protein sequence

>MS.gene57185.t1

MVFSEDEIMKLYRIWKKVMEMLRDRNYLVEDFEVNIQDFKEKYGENVKREDLVIKKAKKDNPSDQIYVFFPLNDKVGVHTLRTYTKRMDSENVYRAIIVCQTSLTKAARDFSEIASKFHLEVFHVFSEDEISKLYRIRKTVMEMLRDRNYLVGDFEVNMSKQEFKEKYGEHMKREDLVINKAKKDNPSDQIYVFFPEDDKVGVQTFRTYTKCMNSENVYRAIIVCQNSLTNMSWNSISQFASKFHLEVFQEAELLVNVRYHKLVPEHQVLTDNEKKSVLERYTVKETQLPRIQVRDPVARYYGMKRGQVVKIIRPSETAGRYVTYRFVV