AlfalfaGEDB | MS.gene09560

M. sativa cultivar XinJiangDaYe / MS.gene09560

KEGG: K03013
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003899 GO:0005488 GO:0005575 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0032774 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0097659 GO:0097747 GO:0110165 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576
PFAM: PF01191.22 PF03871.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09560.t1	XP_003611642.1	91.7	204	17	0	2	205	127	330	1.40E-98	369

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09560.t1	O81098	69.3	205	63	0	2	206	1	205	5.9e-77	288.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09560.t1	G7K3Y0	91.7	204	17	0	2	205	127	330	1.0e-98	369.0

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene004126	MS.gene09560	PPI
MS.gene004127	MS.gene09560	PPI
MS.gene014019	MS.gene09560	PPI
MS.gene014162	MS.gene09560	PPI
MS.gene017777	MS.gene09560	PPI
MS.gene022098	MS.gene09560	PPI
MS.gene028301	MS.gene09560	PPI
MS.gene063673	MS.gene09560	PPI
MS.gene07741	MS.gene09560	PPI
MS.gene09560	MS.gene64653	PPI

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09560.t1	MTR_5g016220	91.220	205	18	0	2	206	127	331	3.13e-136	385
MS.gene09560.t1	MTR_5g016220	81.890	127	22	1	1	127	1	126	2.21e-68	212
MS.gene09560.t1	MTR_5g016200	90.594	202	16	1	1	202	1	199	4.03e-132	369
MS.gene09560.t1	MTR_5g005470	84.466	206	32	0	1	206	1	206	1.12e-129	363
MS.gene09560.t1	MTR_6g042230	62.621	206	76	1	1	206	1	205	6.20e-86	253
MS.gene09560.t1	MTR_6g088010	58.454	207	84	1	1	205	1	207	1.43e-84	249
MS.gene09560.t1	MTR_6g088020	58.654	208	82	2	1	205	1	207	3.89e-81	240
MS.gene09560.t1	MTR_7g090220	40.513	195	113	2	12	205	55	247	1.49e-44	149
MS.gene09560.t1	MTR_3g058520	33.508	191	72	5	4	194	23	158	3.32e-17	75.9

Showing 1 to 9 of 9 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09560.t1	AT3G22320	69.268	205	63	0	2	206	1	205	8.19e-106	303
MS.gene09560.t1	AT5G57980	46.117	206	107	2	5	206	5	210	2.22e-60	188
MS.gene09560.t1	AT2G41340	40.394	203	118	2	4	205	17	217	5.16e-45	149
MS.gene09560.t1	AT3G57080	35.784	204	128	2	3	205	20	221	1.70e-38	132
MS.gene09560.t1	AT3G54490	32.836	201	132	2	7	206	35	233	9.36e-32	115
MS.gene09560.t1	AT2G41340	36.313	179	102	3	4	181	17	184	2.41e-29	108
MS.gene09560.t1	AT2G41340	38.650	163	97	2	4	165	17	177	6.32e-29	107
MS.gene09560.t1	AT3G16680	46.753	77	39	1	84	158	2	78	2.16e-16	71.6

Showing 1 to 8 of 8 entries

Previous1Next

Find 55 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCTTATACAACAAAT+CGG	0.490397	5.2:+7855471	None:intergenic
AACGGTGTATCTCTCGAGTA+AGG	0.416794	5.2:+7857134	None:intergenic
AACTTCCAAATGAAATTTGG+AGG	0.512170	5.2:+7857328	None:intergenic
AAGACATAAATCTGGTCAGA+GGG	0.592633	5.2:+7857491	None:intergenic
AAGAGTTCAAGGAGAAGTAT+GGG	0.443886	5.2:-7857565	MS.gene09560:CDS
ACATACCGATTTGTTGTATA+AGG	0.225416	5.2:-7855476	None:intergenic
ACGCCAACCTTGTCTTCCTC+CGG	0.433207	5.2:+7857464	None:intergenic
ACTGACCTGAGTTTCTTTAA+CGG	0.397368	5.2:+7857116	None:intergenic
AGAAGACCTTGTCATCAACA+AGG	0.684606	5.2:-7857528	MS.gene09560:CDS
AGAGTTCAAGGAGAAGTATG+GGG	0.574581	5.2:-7857564	MS.gene09560:CDS

Showing 1 to 10 of 55 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCAATGAAAGAACTGG+AGG	+	chr5.2:7856456-7856475	None:intergenic	30.0%
AAATAGATTCAAAAGCTCTC+AGG	+	chr5.2:7857350-7857369	None:intergenic	30.0%
AAATCAATGAAAGAACTGGA+GGG	+	chr5.2:7856455-7856474	None:intergenic	30.0%
AACTAGATTGTACATCATCA+TGG	+	chr5.2:7857181-7857200	None:intergenic	30.0%
AACTTCCAAATGAAATTTGG+AGG	+	chr5.2:7855833-7855852	None:intergenic	30.0%
AGACAATATGCAAACAAGAA+CGG	+	chr5.2:7857433-7857452	None:intergenic	30.0%
AGCTGACATAAAAATTTCAG+AGG	-	chr5.2:7856562-7856581	MS.gene09560:intron	30.0%
ATGAAATAACGAAGCTGTAT+AGG	-	chr5.2:7855494-7855513	MS.gene09560:CDS	30.0%
CTAGAACAAAATCATCAAAG+AGG	+	chr5.2:7856233-7856252	None:intergenic	30.0%
CTGCTTTAATCTTTGTCTAA+TGG	-	chr5.2:7857402-7857421	MS.gene09560:CDS	30.0%

Showing 1 to 10 of 148 entries

Previous1 2 3 4 5…15Next

Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	7855478	7857702	7855478	ID=MS.gene09560
chr5.2	mRNA	7855478	7857702	7855478	ID=MS.gene09560.t1;Parent=MS.gene09560
chr5.2	exon	7857322	7857702	7857322	ID=MS.gene09560.t1.exon1;Parent=MS.gene09560.t1
chr5.2	CDS	7857322	7857702	7857322	ID=cds.MS.gene09560.t1;Parent=MS.gene09560.t1
chr5.2	exon	7857122	7857235	7857122	ID=MS.gene09560.t1.exon2;Parent=MS.gene09560.t1
chr5.2	CDS	7857122	7857235	7857122	ID=cds.MS.gene09560.t1;Parent=MS.gene09560.t1
chr5.2	exon	7855478	7855603	7855478	ID=MS.gene09560.t1.exon3;Parent=MS.gene09560.t1
chr5.2	CDS	7855478	7855603	7855478	ID=cds.MS.gene09560.t1;Parent=MS.gene09560.t1

Gene Sequence

>MS.gene09560

ATGGTGTTTTCGGAGGATGAAATAACGAAGCTGTATAGGATCCGGAAGACGGTGATGGAGATGCTTCATGACAGGAATTACCTCGTTGGAGATTTTGAGGTTAATATGTCGAAAGAAGAGTTCAAGGAGAAGTATGGGGAGAACATGAAGAGAGAAGACCTTGTCATCAACAAGGCCAAAAAAGACAATCCCTCTGACCAGATTTATGTCTTCTTCCCGGAGGAAGACAAGGTTGGCGTCCACACCTTCAGGACTTACACCAAACGCATGAACTCCGAGAATGTCTACAGGGCCATCATCGTTTGCCAGACCAGACTTACTAACCAGGCACGGAACAGTATCTCTGATATTGCCTCCAAATTTCATTTGGAAGTTTTTCAGGTAATTCATCAATCGATCAATCAATCAAGTTTTGTGGTGATTGTTAATGGTTGAGGTAACTGTTGTTAGTGTGTGCGTGCTTGCAGGAGGCTGAATTGCTCGTTAATGTAAGATATCATGTGCTTGTGCCAAAACATCAGGTGCTGACTGACAATGAGAAGAAAACCTTACTCGAGAGATACACCGTTAAAGAAACTCAGGTCAGTTATAAAAAAATTGAGGAAATTTTGTGTTATTTAGAATGTGACTAATCGAATGAGTGCACTTGATGGCATTGTAACATTGAAGGAAGGACAAAGTGAAAATGTAAACTATTAGGACTTTGTTAATGTTGTAGTAGCTGATGTTGGATTGTTATTTGTATTTTAGTTCCTCTTTGATGATTTTGTTCTAGCTTATATCATTATGTTAAATTGTTTATTTTCTTTCTTTTAGTGTTTTTGTTGATCTGGAAAATAGTGAATTAACTTCAGAATGAAAGAGTTTTGCCTATTCCCCTCGCTATCGGTCATCTCAAACCCCCCAACCCTTTATCCTTTAAGACACCACTCGGTCCACAGCCCTTTCCTATTCAACTCATGCATTATATCTCCCCCTCCAGTTCTTTCATTGATTTTCTTTGATTGTCTTAAATAATCACTTGGGTGAGTATTTAGATAGAGCTTACTGTTGCAGATTGTCAGCGGCGTACCCTGCAACATCAAGCTGACATAAAAATTTCAGAGGAAATCAGATTTTATAGTGCCTAAGTCTGGAAATTAGAACGATTTTGGTAGTACACATTAAGATTGTTGAGTGATTTAAAGCTGAATATCGTGTATAATACTATTAATTATAGAAAATTAAGTGATCTGTCTATAAGCTTTTAGATGTATTCTCAGGTTAGTGGATACTGACTTTCCTAAATGACAGAGTACTTCAAATATAACTTCATCATTTGTACCTCACTCTCACTAGTCTATGATTTCGTAAAAATTAAAATATATGATGTCCTTTGCAATTAATATCACTAGATGGAACTATTCCATTAGGTGAACACCTAAAGAAAGCTAAGAAAGACAATTATTATCATATAAGGGGAAACAACATACTTATTCCAGCCATTTTCCTCTGACTATAAACAATGAATAGCTACAATCAGCCGATCACAGCAAACTGCTATAAAGCATTTCCCTTTTGGGGCATTCTCTTTACTTATCCCAGCCATTTATTTATTTTGTAAAGTTATATAATAGTATTTCACCTAGGCATTTGAAAAATTTCTGCACACACTCACACGTGCTTCATCTCTGAATTTTAACCTTTCTTCTTTCCTGGTTCCATGATGATGTACAATCTAGTTCCTGATTCTAATTTAGATTTGGATGTAATTAAGAATGCATGAAAAGCAAAATTAGCATCCATTGTATTTCATGCAAATAAAACTTCTTCATTGTTTATTCCTGTAGTGAAAGTTTGTCAGATTTGTCACCCTTGTCGTTCGCTTGTCCTGAGAGCTTTTGAATCTATTTACATTGGATAGTTCTACTGGTTTTAGTGTTTACTGCTTTAATCTTTGTCTAATGGATGTACCGTTCTTGTTTGCATATTGTCTTGTATGTGCAATTGTATCATTCTACTACAAAATTGTACTGATGCTGACATGGTTCACTATATCTAATATTTGTACTGATGCTGACATGGTTCACTATATCTAATATTTATGGTCTGTTTCTCAGCTACCTAGAATCCAGGTGACGGATCCAGTTGCAAGATATTATGGCATGAAGCGTGGACAAGTTGTTAAGATAATCCGGCCAAGTGAGACTGCAGGAAGATATGTTACATACCGATTTGTTGTATAA

Protein sequence

>MS.gene09560.t1

MVFSEDEITKLYRIRKTVMEMLHDRNYLVGDFEVNMSKEEFKEKYGENMKREDLVINKAKKDNPSDQIYVFFPEEDKVGVHTFRTYTKRMNSENVYRAIIVCQTRLTNQARNSISDIASKFHLEVFQEAELLVNVRYHVLVPKHQVLTDNEKKTLLERYTVKETQLPRIQVTDPVARYYGMKRGQVVKIIRPSETAGRYVTYRFVV