AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09560.t1 MTR_5g016220 91.220 205 18 0 2 206 127 331 3.13e-136 385
MS.gene09560.t1 MTR_5g016220 81.890 127 22 1 1 127 1 126 2.21e-68 212
MS.gene09560.t1 MTR_5g016200 90.594 202 16 1 1 202 1 199 4.03e-132 369
MS.gene09560.t1 MTR_5g005470 84.466 206 32 0 1 206 1 206 1.12e-129 363
MS.gene09560.t1 MTR_6g042230 62.621 206 76 1 1 206 1 205 6.20e-86 253
MS.gene09560.t1 MTR_6g088010 58.454 207 84 1 1 205 1 207 1.43e-84 249
MS.gene09560.t1 MTR_6g088020 58.654 208 82 2 1 205 1 207 3.89e-81 240
MS.gene09560.t1 MTR_7g090220 40.513 195 113 2 12 205 55 247 1.49e-44 149
MS.gene09560.t1 MTR_3g058520 33.508 191 72 5 4 194 23 158 3.32e-17 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09560.t1 AT3G22320 69.268 205 63 0 2 206 1 205 8.19e-106 303
MS.gene09560.t1 AT5G57980 46.117 206 107 2 5 206 5 210 2.22e-60 188
MS.gene09560.t1 AT2G41340 40.394 203 118 2 4 205 17 217 5.16e-45 149
MS.gene09560.t1 AT3G57080 35.784 204 128 2 3 205 20 221 1.70e-38 132
MS.gene09560.t1 AT3G54490 32.836 201 132 2 7 206 35 233 9.36e-32 115
MS.gene09560.t1 AT2G41340 36.313 179 102 3 4 181 17 184 2.41e-29 108
MS.gene09560.t1 AT2G41340 38.650 163 97 2 4 165 17 177 6.32e-29 107
MS.gene09560.t1 AT3G16680 46.753 77 39 1 84 158 2 78 2.16e-16 71.6

Find 55 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATACCGATTTGTTGTATA+AGG 0.225416 5.2:-7855476 None:intergenic
GAAGAGTTCAAGGAGAAGTA+TGG 0.258088 5.2:-7857566 MS.gene09560:CDS
GATCCAGTTGCAAGATATTA+TGG 0.330603 5.2:-7855560 MS.gene09560:CDS
GGATCCGTCACCTGGATTCT+AGG 0.338245 5.2:+7855578 None:intergenic
CCAGATTTATGTCTTCTTCC+CGG 0.347022 5.2:-7857483 MS.gene09560:CDS
TCAGTCAGCACCTGATGTTT+TGG 0.355896 5.2:+7857171 None:intergenic
ATGAAATAACGAAGCTGTAT+AGG 0.377457 5.2:-7857664 MS.gene09560:CDS
TATTGCCTCCAAATTTCATT+TGG 0.382348 5.2:-7857333 MS.gene09560:CDS
AGGTTGGCGTCCACACCTTC+AGG 0.394677 5.2:-7857451 MS.gene09560:CDS
CCGTGCCTGGTTAGTAAGTC+TGG 0.396665 5.2:+7857370 None:intergenic
ACTGACCTGAGTTTCTTTAA+CGG 0.397368 5.2:+7857116 None:intergenic
GCATCTCCATCACCGTCTTC+CGG 0.402383 5.2:+7857639 None:intergenic
ATGCCATAATATCTTGCAAC+TGG 0.416357 5.2:+7855557 None:intergenic
AACGGTGTATCTCTCGAGTA+AGG 0.416794 5.2:+7857134 None:intergenic
ATTCTCGGAGTTCATGCGTT+TGG 0.430411 5.2:+7857421 None:intergenic
ACGCCAACCTTGTCTTCCTC+CGG 0.433207 5.2:+7857464 None:intergenic
TTGCAACTGGATCCGTCACC+TGG 0.443610 5.2:+7855570 None:intergenic
AAGAGTTCAAGGAGAAGTAT+GGG 0.443886 5.2:-7857565 MS.gene09560:CDS
CAGAGATACTGTTCCGTGCC+TGG 0.445363 5.2:+7857357 None:intergenic
GACAAGTTGTTAAGATAATC+CGG 0.451366 5.2:-7855526 MS.gene09560:CDS
TATGTCGAAAGAAGAGTTCA+AGG 0.467664 5.2:-7857576 MS.gene09560:CDS
CCTGGTTAGTAAGTCTGGTC+TGG 0.481667 5.2:+7857375 None:intergenic
TTCCTGCAGTCTCACTTGGC+CGG 0.488931 5.2:+7855507 None:intergenic
AAAATCCTTATACAACAAAT+CGG 0.490397 5.2:+7855471 None:intergenic
TAACGAAGCTGTATAGGATC+CGG 0.497065 5.2:-7857658 MS.gene09560:CDS
GATGGCCCTGTAGACATTCT+CGG 0.502591 5.2:+7857406 None:intergenic
CCGGGAAGAAGACATAAATC+TGG 0.508593 5.2:+7857483 None:intergenic
CGCCAACCTTGTCTTCCTCC+GGG 0.510726 5.2:+7857465 None:intergenic
AACTTCCAAATGAAATTTGG+AGG 0.512170 5.2:+7857328 None:intergenic
TGTGCTTGTGCCAAAACATC+AGG 0.516165 5.2:-7857181 MS.gene09560:CDS
TCTGGTCTGGCAAACGATGA+TGG 0.521258 5.2:+7857388 None:intergenic
TATCTTCCTGCAGTCTCACT+TGG 0.525204 5.2:+7855503 None:intergenic
TGAACTCCGAGAATGTCTAC+AGG 0.539472 5.2:-7857412 MS.gene09560:CDS
GCTGTATAGGATCCGGAAGA+CGG 0.548026 5.2:-7857651 MS.gene09560:CDS
TTCTCAGCTACCTAGAATCC+AGG 0.559875 5.2:-7855588 MS.gene09560:intron
TTCCCGGAGGAAGACAAGGT+TGG 0.563167 5.2:-7857467 MS.gene09560:CDS
TAGGATCCGGAAGACGGTGA+TGG 0.567579 5.2:-7857645 MS.gene09560:CDS
TGATGGAGATGCTTCATGAC+AGG 0.572852 5.2:-7857628 MS.gene09560:CDS
CTTCTTCCCGGAGGAAGACA+AGG 0.574499 5.2:-7857471 MS.gene09560:CDS
AGAGTTCAAGGAGAAGTATG+GGG 0.574581 5.2:-7857564 MS.gene09560:CDS
AGATATTATGGCATGAAGCG+TGG 0.584475 5.2:-7855548 MS.gene09560:CDS
AAGACATAAATCTGGTCAGA+GGG 0.592633 5.2:+7857491 None:intergenic
ATCCGGCCAAGTGAGACTGC+AGG 0.593487 5.2:-7855509 MS.gene09560:CDS
CCAGACCAGACTTACTAACC+AGG 0.596564 5.2:-7857375 MS.gene09560:CDS
GCGTTTGGTGTAAGTCCTGA+AGG 0.608662 5.2:+7857436 None:intergenic
ATACACCGTTAAAGAAACTC+AGG 0.619813 5.2:-7857121 MS.gene09560:intron
CATGACAGGAATTACCTCGT+TGG 0.635368 5.2:-7857614 MS.gene09560:CDS
GAAGACATAAATCTGGTCAG+AGG 0.641158 5.2:+7857490 None:intergenic
CCAGACTTACTAACCAGGCA+CGG 0.642546 5.2:-7857370 MS.gene09560:CDS
GCTACCTAGAATCCAGGTGA+CGG 0.654774 5.2:-7855582 MS.gene09560:CDS
TGGTGTAAGTCCTGAAGGTG+TGG 0.659671 5.2:+7857441 None:intergenic
AGAAGACCTTGTCATCAACA+AGG 0.684606 5.2:-7857528 MS.gene09560:CDS
GAACTCCGAGAATGTCTACA+GGG 0.693592 5.2:-7857411 MS.gene09560:CDS
GATTTATGTCTTCTTCCCGG+AGG 0.710733 5.2:-7857480 MS.gene09560:CDS
TAACCTCAAAATCTCCAACG+AGG 0.783111 5.2:+7857600 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTTACAAAATAAATAAA+TGG + chr5.2:7857065-7857084 None:intergenic 10.0%
!! AAGACAATTATTATCATATA+AGG - chr5.2:7856914-7856933 MS.gene09560:intron 15.0%
!! AGACAATTATTATCATATAA+GGG - chr5.2:7856915-7856934 MS.gene09560:intron 15.0%
!! TTCACTATATCTAATATTTA+TGG - chr5.2:7857542-7857561 MS.gene09560:CDS 15.0%
!! AAAAACTTCCAAATGAAATT+TGG + chr5.2:7855836-7855855 None:intergenic 20.0%
!! AAGTGAAAATGTAAACTATT+AGG - chr5.2:7856155-7856174 MS.gene09560:intron 20.0%
!! ATTGTCTTAAATAATCACTT+GGG - chr5.2:7856481-7856500 MS.gene09560:intron 20.0%
!! GACAATTATTATCATATAAG+GGG - chr5.2:7856916-7856935 MS.gene09560:intron 20.0%
!! TACAAAATAAATAAATGGCT+GGG + chr5.2:7857060-7857079 None:intergenic 20.0%
!! TATATAATAGTATTTCACCT+AGG - chr5.2:7857084-7857103 MS.gene09560:intron 20.0%
!! TTACAAAATAAATAAATGGC+TGG + chr5.2:7857061-7857080 None:intergenic 20.0%
!! TTTATTTGCATGAAATACAA+TGG + chr5.2:7857262-7857281 None:intergenic 20.0%
! AAGAAAATCAATGAAAGAAC+TGG + chr5.2:7856459-7856478 None:intergenic 25.0%
! GATTGTCTTAAATAATCACT+TGG - chr5.2:7856480-7856499 MS.gene09560:intron 25.0%
! GGTCAGTTATAAAAAAATTG+AGG - chr5.2:7856058-7856077 MS.gene09560:intron 25.0%
! TATTCATTGTTTATAGTCAG+AGG + chr5.2:7856969-7856988 None:intergenic 25.0%
! TCCAAATCTAAATTAGAATC+AGG + chr5.2:7857204-7857223 None:intergenic 25.0%
! TCCTGATTCTAATTTAGATT+TGG - chr5.2:7857200-7857219 MS.gene09560:CDS 25.0%
! TCTAGTGATATTAATTGCAA+AGG + chr5.2:7856853-7856872 None:intergenic 25.0%
! TTGCAATTAATATCACTAGA+TGG - chr5.2:7856853-7856872 MS.gene09560:intron 25.0%
!! ATATAATGCATGAGTTGAAT+AGG + chr5.2:7856428-7856447 None:intergenic 25.0%
!! ATTTCATTTGGAAGTTTTTC+AGG - chr5.2:7855837-7855856 MS.gene09560:intron 25.0%
!! GCTTTTGAATCTATTTACAT+TGG - chr5.2:7857354-7857373 MS.gene09560:CDS 25.0%
!!! TTTTAGTGTTTTTGTTGATC+TGG - chr5.2:7856288-7856307 MS.gene09560:intron 25.0%
AAAATCAATGAAAGAACTGG+AGG + chr5.2:7856456-7856475 None:intergenic 30.0%
AAATAGATTCAAAAGCTCTC+AGG + chr5.2:7857350-7857369 None:intergenic 30.0%
AAATCAATGAAAGAACTGGA+GGG + chr5.2:7856455-7856474 None:intergenic 30.0%
AACTAGATTGTACATCATCA+TGG + chr5.2:7857181-7857200 None:intergenic 30.0%
AACTTCCAAATGAAATTTGG+AGG + chr5.2:7855833-7855852 None:intergenic 30.0%
AGACAATATGCAAACAAGAA+CGG + chr5.2:7857433-7857452 None:intergenic 30.0%
AGCTGACATAAAAATTTCAG+AGG - chr5.2:7856562-7856581 MS.gene09560:intron 30.0%
ATGAAATAACGAAGCTGTAT+AGG - chr5.2:7855494-7855513 MS.gene09560:CDS 30.0%
CTAGAACAAAATCATCAAAG+AGG + chr5.2:7856233-7856252 None:intergenic 30.0%
CTGCTTTAATCTTTGTCTAA+TGG - chr5.2:7857402-7857421 MS.gene09560:CDS 30.0%
GACAAGTTGTTAAGATAATC+CGG - chr5.2:7857632-7857651 MS.gene09560:CDS 30.0%
TATTGCCTCCAAATTTCATT+TGG - chr5.2:7855825-7855844 MS.gene09560:intron 30.0%
TGTTTATAGTCAGAGGAAAA+TGG + chr5.2:7856962-7856981 None:intergenic 30.0%
! AAGCTTTTAGATGTATTCTC+AGG - chr5.2:7856718-7856737 MS.gene09560:intron 30.0%
! GATCAATCAATCAAGTTTTG+TGG - chr5.2:7855873-7855892 MS.gene09560:intron 30.0%
! TCTGGAAATTAGAACGATTT+TGG - chr5.2:7856609-7856628 MS.gene09560:intron 30.0%
! TGTCTTTCTTAGCTTTCTTT+AGG + chr5.2:7856900-7856919 None:intergenic 30.0%
! TTTACATTGGATAGTTCTAC+TGG - chr5.2:7857367-7857386 MS.gene09560:CDS 30.0%
! TTTGAAGTACTCTGTCATTT+AGG + chr5.2:7856762-7856781 None:intergenic 30.0%
! TTTTAACCTTTCTTCTTTCC+TGG - chr5.2:7857153-7857172 MS.gene09560:CDS 30.0%
!! AGTTTTGTGGTGATTGTTAA+TGG - chr5.2:7855886-7855905 MS.gene09560:intron 30.0%
!! CAGAAATTTTTCAAATGCCT+AGG + chr5.2:7857104-7857123 None:intergenic 30.0%
!! CTATAAAGCATTTCCCTTTT+GGG - chr5.2:7857017-7857036 MS.gene09560:intron 30.0%
!! TATAAAGCATTTCCCTTTTG+GGG - chr5.2:7857018-7857037 MS.gene09560:intron 30.0%
AAGACATAAATCTGGTCAGA+GGG + chr5.2:7855670-7855689 None:intergenic 35.0%
AATCAATGAAAGAACTGGAG+GGG + chr5.2:7856454-7856473 None:intergenic 35.0%
AATGTTGTAGTAGCTGATGT+TGG - chr5.2:7856186-7856205 MS.gene09560:intron 35.0%
ACTGACCTGAGTTTCTTTAA+CGG + chr5.2:7856045-7856064 None:intergenic 35.0%
AGTGGTGTCTTAAAGGATAA+AGG + chr5.2:7856389-7856408 None:intergenic 35.0%
ATACACCGTTAAAGAAACTC+AGG - chr5.2:7856037-7856056 MS.gene09560:intron 35.0%
ATCTGACAAACTTTCACTAC+AGG + chr5.2:7857303-7857322 None:intergenic 35.0%
ATGCCATAATATCTTGCAAC+TGG + chr5.2:7857604-7857623 None:intergenic 35.0%
CTAGATGGAACTATTCCATT+AGG - chr5.2:7856868-7856887 MS.gene09560:intron 35.0%
GATCCAGTTGCAAGATATTA+TGG - chr5.2:7857598-7857617 MS.gene09560:CDS 35.0%
GTCTTAAAGGATAAAGGGTT+GGG + chr5.2:7856383-7856402 None:intergenic 35.0%
GTGGTGTCTTAAAGGATAAA+GGG + chr5.2:7856388-7856407 None:intergenic 35.0%
TAGATGTATTCTCAGGTTAG+TGG - chr5.2:7856725-7856744 MS.gene09560:intron 35.0%
TATGTCGAAAGAAGAGTTCA+AGG - chr5.2:7855582-7855601 MS.gene09560:CDS 35.0%
TCGTTCTAATTTCCAGACTT+AGG + chr5.2:7856606-7856625 None:intergenic 35.0%
TCTTAAAGGATAAAGGGTTG+GGG + chr5.2:7856382-7856401 None:intergenic 35.0%
TGATGGCATTGTAACATTGA+AGG - chr5.2:7856125-7856144 MS.gene09560:intron 35.0%
TGTCTTAAAGGATAAAGGGT+TGG + chr5.2:7856384-7856403 None:intergenic 35.0%
TTCTTTAGGTGTTCACCTAA+TGG + chr5.2:7856886-7856905 None:intergenic 35.0%
! AAATTGTACTGATGCTGACA+TGG - chr5.2:7857482-7857501 MS.gene09560:CDS 35.0%
! AAGAGTTCAAGGAGAAGTAT+GGG - chr5.2:7855593-7855612 MS.gene09560:intron 35.0%
! ATGCATGAGTTGAATAGGAA+AGG + chr5.2:7856423-7856442 None:intergenic 35.0%
! GATTTTATAGTGCCTAAGTC+TGG - chr5.2:7856591-7856610 MS.gene09560:intron 35.0%
! TATTTGTACTGATGCTGACA+TGG - chr5.2:7857519-7857538 MS.gene09560:CDS 35.0%
! TGCATGAGTTGAATAGGAAA+GGG + chr5.2:7856422-7856441 None:intergenic 35.0%
!! GCTATAAAGCATTTCCCTTT+TGG - chr5.2:7857016-7857035 MS.gene09560:intron 35.0%
!! TTATAGCAGTTTGCTGTGAT+CGG + chr5.2:7857003-7857022 None:intergenic 35.0%
!! TTATCCTTTAAGACACCACT+CGG - chr5.2:7856389-7856408 MS.gene09560:intron 35.0%
AATCGAATGAGTGCACTTGA+TGG - chr5.2:7856108-7856127 MS.gene09560:intron 40.0%
AGAAGACCTTGTCATCAACA+AGG - chr5.2:7855630-7855649 MS.gene09560:intron 40.0%
AGATATTATGGCATGAAGCG+TGG - chr5.2:7857610-7857629 MS.gene09560:CDS 40.0%
AGTAAAGAGAATGCCCCAAA+AGG + chr5.2:7857034-7857053 None:intergenic 40.0%
ATCAATGAAAGAACTGGAGG+GGG + chr5.2:7856453-7856472 None:intergenic 40.0%
ATCATAGACTAGTGAGAGTG+AGG + chr5.2:7856804-7856823 None:intergenic 40.0%
ATGGAACCAGGAAAGAAGAA+AGG + chr5.2:7857162-7857181 None:intergenic 40.0%
CCAGATTTATGTCTTCTTCC+CGG - chr5.2:7855675-7855694 MS.gene09560:intron 40.0%
CTTAAAGGATAAAGGGTTGG+GGG + chr5.2:7856381-7856400 None:intergenic 40.0%
GAAGACATAAATCTGGTCAG+AGG + chr5.2:7855671-7855690 None:intergenic 40.0%
GAAGAGTTCAAGGAGAAGTA+TGG - chr5.2:7855592-7855611 MS.gene09560:intron 40.0%
GGCATTGTAACATTGAAGGA+AGG - chr5.2:7856129-7856148 MS.gene09560:intron 40.0%
GTAAAGAGAATGCCCCAAAA+GGG + chr5.2:7857033-7857052 None:intergenic 40.0%
GTGGTGATTGTTAATGGTTG+AGG - chr5.2:7855892-7855911 MS.gene09560:intron 40.0%
TAACCTCAAAATCTCCAACG+AGG + chr5.2:7855561-7855580 None:intergenic 40.0%
TAACGAAGCTGTATAGGATC+CGG - chr5.2:7855500-7855519 MS.gene09560:CDS 40.0%
TATAGTCAGAGGAAAATGGC+TGG + chr5.2:7856958-7856977 None:intergenic 40.0%
TATGTCAGCTTGATGTTGCA+GGG + chr5.2:7856552-7856571 None:intergenic 40.0%
TTAAAGGATAAAGGGTTGGG+GGG + chr5.2:7856380-7856399 None:intergenic 40.0%
TTACTGTTGCAGATTGTCAG+CGG - chr5.2:7856522-7856541 MS.gene09560:intron 40.0%
TTATGTCAGCTTGATGTTGC+AGG + chr5.2:7856553-7856572 None:intergenic 40.0%
TTGTACATCATCATGGAACC+AGG + chr5.2:7857174-7857193 None:intergenic 40.0%
! AGAGTTCAAGGAGAAGTATG+GGG - chr5.2:7855594-7855613 MS.gene09560:intron 40.0%
! TTACCTCGTTGGAGATTTTG+AGG - chr5.2:7855555-7855574 MS.gene09560:CDS 40.0%
!!! GTCAGAGGGATTGTCTTTTT+TGG + chr5.2:7855656-7855675 None:intergenic 40.0%
!!! TTTTGGCCTTGTTGATGACA+AGG + chr5.2:7855639-7855658 None:intergenic 40.0%
AACGGTGTATCTCTCGAGTA+AGG + chr5.2:7856027-7856046 None:intergenic 45.0%
AGTTGAATAGGAAAGGGCTG+TGG + chr5.2:7856416-7856435 None:intergenic 45.0%
ATTCTCGGAGTTCATGCGTT+TGG + chr5.2:7855740-7855759 None:intergenic 45.0%
CATGACAGGAATTACCTCGT+TGG - chr5.2:7855544-7855563 MS.gene09560:CDS 45.0%
CCGGGAAGAAGACATAAATC+TGG + chr5.2:7855678-7855697 None:intergenic 45.0%
GAACTCCGAGAATGTCTACA+GGG - chr5.2:7855747-7855766 MS.gene09560:intron 45.0%
GATTTATGTCTTCTTCCCGG+AGG - chr5.2:7855678-7855697 MS.gene09560:intron 45.0%
TATCTTCCTGCAGTCTCACT+TGG + chr5.2:7857658-7857677 None:intergenic 45.0%
TGAACTCCGAGAATGTCTAC+AGG - chr5.2:7855746-7855765 MS.gene09560:intron 45.0%
TGATGGAGATGCTTCATGAC+AGG - chr5.2:7855530-7855549 MS.gene09560:CDS 45.0%
TGTGCTTGTGCCAAAACATC+AGG - chr5.2:7855977-7855996 MS.gene09560:intron 45.0%
TTCTCAGCTACCTAGAATCC+AGG - chr5.2:7857570-7857589 MS.gene09560:CDS 45.0%
! TCAGTCAGCACCTGATGTTT+TGG + chr5.2:7855990-7856009 None:intergenic 45.0%
! TTTGAGATGACCGATAGCGA+GGG + chr5.2:7856357-7856376 None:intergenic 45.0%
CCAGACCAGACTTACTAACC+AGG - chr5.2:7855783-7855802 MS.gene09560:intron 50.0%
CCAGACTTACTAACCAGGCA+CGG - chr5.2:7855788-7855807 MS.gene09560:intron 50.0%
CCTGGTTAGTAAGTCTGGTC+TGG + chr5.2:7855786-7855805 None:intergenic 50.0%
GATGGCCCTGTAGACATTCT+CGG + chr5.2:7855755-7855774 None:intergenic 50.0%
GCTACCTAGAATCCAGGTGA+CGG - chr5.2:7857576-7857595 MS.gene09560:CDS 50.0%
GCTGTATAGGATCCGGAAGA+CGG - chr5.2:7855507-7855526 MS.gene09560:CDS 50.0%
TCAGGACAAGCGAACGACAA+GGG + chr5.2:7857332-7857351 None:intergenic 50.0%
TCTGGTCTGGCAAACGATGA+TGG + chr5.2:7855773-7855792 None:intergenic 50.0%
TGGACCGAGTGGTGTCTTAA+AGG + chr5.2:7856396-7856415 None:intergenic 50.0%
TGGTGTAAGTCCTGAAGGTG+TGG + chr5.2:7855720-7855739 None:intergenic 50.0%
TTGAGATGACCGATAGCGAG+GGG + chr5.2:7856356-7856375 None:intergenic 50.0%
TTGCCTATTCCCCTCGCTAT+CGG - chr5.2:7856344-7856363 MS.gene09560:intron 50.0%
! GTTTGAGATGACCGATAGCG+AGG + chr5.2:7856358-7856377 None:intergenic 50.0%
!! GCGTTTGGTGTAAGTCCTGA+AGG + chr5.2:7855725-7855744 None:intergenic 50.0%
ACGCCAACCTTGTCTTCCTC+CGG + chr5.2:7855697-7855716 None:intergenic 55.0%
CAGAGATACTGTTCCGTGCC+TGG + chr5.2:7855804-7855823 None:intergenic 55.0%
CCGTGCCTGGTTAGTAAGTC+TGG + chr5.2:7855791-7855810 None:intergenic 55.0%
CTCAGGACAAGCGAACGACA+AGG + chr5.2:7857333-7857352 None:intergenic 55.0%
CTTCTTCCCGGAGGAAGACA+AGG - chr5.2:7855687-7855706 MS.gene09560:intron 55.0%
GCATCTCCATCACCGTCTTC+CGG + chr5.2:7855522-7855541 None:intergenic 55.0%
GGATCCGTCACCTGGATTCT+AGG + chr5.2:7857583-7857602 None:intergenic 55.0%
GTTAGTGTGTGCGTGCTTGC+AGG - chr5.2:7855923-7855942 MS.gene09560:intron 55.0%
TAGGATCCGGAAGACGGTGA+TGG - chr5.2:7855513-7855532 MS.gene09560:CDS 55.0%
TGACCGATAGCGAGGGGAAT+AGG + chr5.2:7856350-7856369 None:intergenic 55.0%
TTCCCGGAGGAAGACAAGGT+TGG - chr5.2:7855691-7855710 MS.gene09560:intron 55.0%
TTCCTGCAGTCTCACTTGGC+CGG + chr5.2:7857654-7857673 None:intergenic 55.0%
TTGCAACTGGATCCGTCACC+TGG + chr5.2:7857591-7857610 None:intergenic 55.0%
AGGTTGGCGTCCACACCTTC+AGG - chr5.2:7855707-7855726 MS.gene09560:intron 60.0%
AGTGTGTGCGTGCTTGCAGG+AGG - chr5.2:7855926-7855945 MS.gene09560:intron 60.0%
ATCCGGCCAAGTGAGACTGC+AGG - chr5.2:7857649-7857668 MS.gene09560:CDS 60.0%
CGCCAACCTTGTCTTCCTCC+GGG + chr5.2:7855696-7855715 None:intergenic 60.0%
GGAAAGGGCTGTGGACCGAG+TGG + chr5.2:7856407-7856426 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 7855478 7857702 7855478 ID=MS.gene09560
chr5.2 mRNA 7855478 7857702 7855478 ID=MS.gene09560.t1;Parent=MS.gene09560
chr5.2 exon 7857322 7857702 7857322 ID=MS.gene09560.t1.exon1;Parent=MS.gene09560.t1
chr5.2 CDS 7857322 7857702 7857322 ID=cds.MS.gene09560.t1;Parent=MS.gene09560.t1
chr5.2 exon 7857122 7857235 7857122 ID=MS.gene09560.t1.exon2;Parent=MS.gene09560.t1
chr5.2 CDS 7857122 7857235 7857122 ID=cds.MS.gene09560.t1;Parent=MS.gene09560.t1
chr5.2 exon 7855478 7855603 7855478 ID=MS.gene09560.t1.exon3;Parent=MS.gene09560.t1
chr5.2 CDS 7855478 7855603 7855478 ID=cds.MS.gene09560.t1;Parent=MS.gene09560.t1
Gene Sequence

>MS.gene09560

ATGGTGTTTTCGGAGGATGAAATAACGAAGCTGTATAGGATCCGGAAGACGGTGATGGAGATGCTTCATGACAGGAATTACCTCGTTGGAGATTTTGAGGTTAATATGTCGAAAGAAGAGTTCAAGGAGAAGTATGGGGAGAACATGAAGAGAGAAGACCTTGTCATCAACAAGGCCAAAAAAGACAATCCCTCTGACCAGATTTATGTCTTCTTCCCGGAGGAAGACAAGGTTGGCGTCCACACCTTCAGGACTTACACCAAACGCATGAACTCCGAGAATGTCTACAGGGCCATCATCGTTTGCCAGACCAGACTTACTAACCAGGCACGGAACAGTATCTCTGATATTGCCTCCAAATTTCATTTGGAAGTTTTTCAGGTAATTCATCAATCGATCAATCAATCAAGTTTTGTGGTGATTGTTAATGGTTGAGGTAACTGTTGTTAGTGTGTGCGTGCTTGCAGGAGGCTGAATTGCTCGTTAATGTAAGATATCATGTGCTTGTGCCAAAACATCAGGTGCTGACTGACAATGAGAAGAAAACCTTACTCGAGAGATACACCGTTAAAGAAACTCAGGTCAGTTATAAAAAAATTGAGGAAATTTTGTGTTATTTAGAATGTGACTAATCGAATGAGTGCACTTGATGGCATTGTAACATTGAAGGAAGGACAAAGTGAAAATGTAAACTATTAGGACTTTGTTAATGTTGTAGTAGCTGATGTTGGATTGTTATTTGTATTTTAGTTCCTCTTTGATGATTTTGTTCTAGCTTATATCATTATGTTAAATTGTTTATTTTCTTTCTTTTAGTGTTTTTGTTGATCTGGAAAATAGTGAATTAACTTCAGAATGAAAGAGTTTTGCCTATTCCCCTCGCTATCGGTCATCTCAAACCCCCCAACCCTTTATCCTTTAAGACACCACTCGGTCCACAGCCCTTTCCTATTCAACTCATGCATTATATCTCCCCCTCCAGTTCTTTCATTGATTTTCTTTGATTGTCTTAAATAATCACTTGGGTGAGTATTTAGATAGAGCTTACTGTTGCAGATTGTCAGCGGCGTACCCTGCAACATCAAGCTGACATAAAAATTTCAGAGGAAATCAGATTTTATAGTGCCTAAGTCTGGAAATTAGAACGATTTTGGTAGTACACATTAAGATTGTTGAGTGATTTAAAGCTGAATATCGTGTATAATACTATTAATTATAGAAAATTAAGTGATCTGTCTATAAGCTTTTAGATGTATTCTCAGGTTAGTGGATACTGACTTTCCTAAATGACAGAGTACTTCAAATATAACTTCATCATTTGTACCTCACTCTCACTAGTCTATGATTTCGTAAAAATTAAAATATATGATGTCCTTTGCAATTAATATCACTAGATGGAACTATTCCATTAGGTGAACACCTAAAGAAAGCTAAGAAAGACAATTATTATCATATAAGGGGAAACAACATACTTATTCCAGCCATTTTCCTCTGACTATAAACAATGAATAGCTACAATCAGCCGATCACAGCAAACTGCTATAAAGCATTTCCCTTTTGGGGCATTCTCTTTACTTATCCCAGCCATTTATTTATTTTGTAAAGTTATATAATAGTATTTCACCTAGGCATTTGAAAAATTTCTGCACACACTCACACGTGCTTCATCTCTGAATTTTAACCTTTCTTCTTTCCTGGTTCCATGATGATGTACAATCTAGTTCCTGATTCTAATTTAGATTTGGATGTAATTAAGAATGCATGAAAAGCAAAATTAGCATCCATTGTATTTCATGCAAATAAAACTTCTTCATTGTTTATTCCTGTAGTGAAAGTTTGTCAGATTTGTCACCCTTGTCGTTCGCTTGTCCTGAGAGCTTTTGAATCTATTTACATTGGATAGTTCTACTGGTTTTAGTGTTTACTGCTTTAATCTTTGTCTAATGGATGTACCGTTCTTGTTTGCATATTGTCTTGTATGTGCAATTGTATCATTCTACTACAAAATTGTACTGATGCTGACATGGTTCACTATATCTAATATTTGTACTGATGCTGACATGGTTCACTATATCTAATATTTATGGTCTGTTTCTCAGCTACCTAGAATCCAGGTGACGGATCCAGTTGCAAGATATTATGGCATGAAGCGTGGACAAGTTGTTAAGATAATCCGGCCAAGTGAGACTGCAGGAAGATATGTTACATACCGATTTGTTGTATAA
Protein sequence

>MS.gene09560.t1

MVFSEDEITKLYRIRKTVMEMLHDRNYLVGDFEVNMSKEEFKEKYGENMKREDLVINKAKKDNPSDQIYVFFPEEDKVGVHTFRTYTKRMNSENVYRAIIVCQTRLTNQARNSISDIASKFHLEVFQEAELLVNVRYHVLVPKHQVLTDNEKKTLLERYTVKETQLPRIQVTDPVARYYGMKRGQVVKIIRPSETAGRYVTYRFVV