AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57186

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57186.t1 MTR_5g016220 90.732 205 19 0 2 206 127 331 2.46e-136 385
MS.gene57186.t1 MTR_5g016220 82.677 127 21 1 1 127 1 126 3.21e-69 214
MS.gene57186.t1 MTR_5g016200 90.099 202 17 1 1 202 1 199 4.31e-132 369
MS.gene57186.t1 MTR_5g005470 83.495 206 34 0 1 206 1 206 4.44e-129 362
MS.gene57186.t1 MTR_6g042230 62.136 206 77 1 1 206 1 205 1.49e-85 251
MS.gene57186.t1 MTR_6g088010 58.454 207 84 1 1 205 1 207 8.87e-85 249
MS.gene57186.t1 MTR_6g088020 58.654 208 82 2 1 205 1 207 6.95e-81 240
MS.gene57186.t1 MTR_7g090220 40.513 195 113 2 12 205 55 247 7.70e-45 149
MS.gene57186.t1 MTR_3g058520 56.923 65 27 1 130 194 95 158 2.36e-16 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57186.t1 AT3G22320 68.780 205 64 0 2 206 1 205 8.84e-106 303
MS.gene57186.t1 AT5G57980 45.631 206 108 2 5 206 5 210 5.13e-60 187
MS.gene57186.t1 AT2G41340 41.117 197 113 2 10 205 23 217 2.24e-45 150
MS.gene57186.t1 AT3G57080 35.784 204 128 2 3 205 20 221 7.25e-39 133
MS.gene57186.t1 AT3G54490 33.333 198 129 2 10 206 38 233 1.59e-32 117
MS.gene57186.t1 AT2G41340 36.994 173 97 3 10 181 23 184 1.07e-29 109
MS.gene57186.t1 AT2G41340 39.490 157 92 2 10 165 23 177 2.57e-29 107
MS.gene57186.t1 AT3G16680 46.753 77 39 1 84 158 2 78 2.07e-16 71.6

Find 56 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATACCGATTTGTTGTATA+AGG 0.225416 5.3:-9031213 None:intergenic
TGACAAGGTCTTCTCTCTTC+AGG 0.255055 5.3:+9033278 None:intergenic
GAAGAGTTCAAGGAGAAGTA+TGG 0.258088 5.3:-9033307 MS.gene57186:CDS
GATCCAGTTGCAAGATATTA+TGG 0.330603 5.3:-9031297 MS.gene57186:CDS
GGATCCGTCACCTGGATTCT+AGG 0.338245 5.3:+9031315 None:intergenic
CCAGATTTATGTCTTCTTCC+CGG 0.347022 5.3:-9033224 MS.gene57186:CDS
TCAGTCAGCACCTGATGTTT+TGG 0.355896 5.3:+9032912 None:intergenic
GCATCTCCATCACCGTCTTC+CGG 0.361627 5.3:+9033380 None:intergenic
TATTGCCTCCAAATTTCATT+TGG 0.382348 5.3:-9033074 MS.gene57186:CDS
AGGTTGGCGTCCACACCTTC+AGG 0.394677 5.3:-9033192 MS.gene57186:CDS
CCGTGCCTGGTTAGTAAGTC+TGG 0.396665 5.3:+9033111 None:intergenic
ATGATATAACGAAGCTGTAT+AGG 0.407076 5.3:-9033405 MS.gene57186:CDS
ATGCCATAATATCTTGCAAC+TGG 0.416357 5.3:+9031294 None:intergenic
ATTCTCGGAGTTCATGCGTT+TGG 0.430411 5.3:+9033162 None:intergenic
ACGCCAACCTTGTCTTCCTC+CGG 0.433207 5.3:+9033205 None:intergenic
GACGGTGTATCTCTCGAGTA+AGG 0.440664 5.3:+9032875 None:intergenic
TTGCAACTGGATCCGTCACC+TGG 0.443610 5.3:+9031307 None:intergenic
AAGAGTTCAAGGAGAAGTAT+GGG 0.443886 5.3:-9033306 MS.gene57186:CDS
CAGAGATACTGTTCCGTGCC+TGG 0.445363 5.3:+9033098 None:intergenic
GACAAGTTGTTAAGATAATC+CGG 0.451366 5.3:-9031263 MS.gene57186:CDS
TATGTCGAAAGAAGAGTTCA+AGG 0.467664 5.3:-9033317 MS.gene57186:CDS
ACTGACCTGAGTTTCTTTGA+CGG 0.478158 5.3:+9032857 None:intergenic
CCTGGTTAGTAAGTCTGGTC+TGG 0.481667 5.3:+9033116 None:intergenic
TTCCTGCAGTCTCACTTGGC+CGG 0.488931 5.3:+9031244 None:intergenic
AAAATCCTTATACAACAAAT+CGG 0.490397 5.3:+9031208 None:intergenic
GATGGCCCTGTAGACATTCT+CGG 0.502591 5.3:+9033147 None:intergenic
CCGGGAAGAAGACATAAATC+TGG 0.508593 5.3:+9033224 None:intergenic
TAACGAAGCTGTATAGGATC+CGG 0.509077 5.3:-9033399 MS.gene57186:CDS
CGCCAACCTTGTCTTCCTCC+GGG 0.510726 5.3:+9033206 None:intergenic
AACTTCCAAATGAAATTTGG+AGG 0.512170 5.3:+9033069 None:intergenic
TGTGCTTGTGCCAAAACATC+AGG 0.516165 5.3:-9032922 MS.gene57186:CDS
TCTGGTCTGGCAAACGATGA+TGG 0.521258 5.3:+9033129 None:intergenic
TGATGGAGATGCTTCGTGAC+AGG 0.522662 5.3:-9033369 MS.gene57186:CDS
TATCTTCCTGCAGTCTCACT+TGG 0.525204 5.3:+9031240 None:intergenic
TGAACTCCGAGAATGTCTAC+AGG 0.539472 5.3:-9033153 MS.gene57186:CDS
GCTGTATAGGATCCGGAAGA+CGG 0.548026 5.3:-9033392 MS.gene57186:CDS
TTCTCAGCTACCTAGAATCC+AGG 0.559875 5.3:-9031325 MS.gene57186:intron
TTCCCGGAGGAAGACAAGGT+TGG 0.563167 5.3:-9033208 MS.gene57186:CDS
TAGGATCCGGAAGACGGTGA+TGG 0.567579 5.3:-9033386 MS.gene57186:CDS
CTTCTTCCCGGAGGAAGACA+AGG 0.574499 5.3:-9033212 MS.gene57186:CDS
AGAGTTCAAGGAGAAGTATG+GGG 0.574581 5.3:-9033305 MS.gene57186:CDS
AGATATTATGGCATGAAGCG+TGG 0.584475 5.3:-9031285 MS.gene57186:CDS
AAGACATAAATCTGGTCAGA+GGG 0.592633 5.3:+9033232 None:intergenic
ATCCGGCCAAGTGAGACTGC+AGG 0.593487 5.3:-9031246 MS.gene57186:CDS
CCAGACCAGACTTACTAACC+AGG 0.596564 5.3:-9033116 MS.gene57186:CDS
GCGTTTGGTGTAAGTCCTGA+AGG 0.608662 5.3:+9033177 None:intergenic
CGTGACAGGAATTACCTCGT+TGG 0.628154 5.3:-9033355 MS.gene57186:CDS
ATACACCGTCAAAGAAACTC+AGG 0.637207 5.3:-9032862 MS.gene57186:intron
GAAGACATAAATCTGGTCAG+AGG 0.641158 5.3:+9033231 None:intergenic
CCAGACTTACTAACCAGGCA+CGG 0.642546 5.3:-9033111 MS.gene57186:CDS
GCTACCTAGAATCCAGGTGA+CGG 0.654774 5.3:-9031319 MS.gene57186:CDS
TGGTGTAAGTCCTGAAGGTG+TGG 0.659671 5.3:+9033182 None:intergenic
AGAAGACCTTGTCATCAACA+AGG 0.684606 5.3:-9033269 MS.gene57186:CDS
GAACTCCGAGAATGTCTACA+GGG 0.693592 5.3:-9033152 MS.gene57186:CDS
GATTTATGTCTTCTTCCCGG+AGG 0.710733 5.3:-9033221 MS.gene57186:CDS
TAACCTCAAAATCTCCAACG+AGG 0.783111 5.3:+9033341 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTTACAAATAAAATAAA+TGG + chr5.3:9032811-9032830 None:intergenic 10.0%
!! AAGACAATTATTATCATATA+AGG - chr5.3:9032660-9032679 MS.gene57186:intron 15.0%
!! AGACAATTATTATCATATAA+GGG - chr5.3:9032661-9032680 MS.gene57186:intron 15.0%
!! TTCACTATATCTAATATTTA+TGG - chr5.3:9033283-9033302 MS.gene57186:CDS 15.0%
!! AAAAACTTCCAAATGAAATT+TGG + chr5.3:9031573-9031592 None:intergenic 20.0%
!! AAGTGAAAATGTAAACTATT+AGG - chr5.3:9031892-9031911 MS.gene57186:intron 20.0%
!! ATTGTCTTAAATAATCACTT+GGG - chr5.3:9032229-9032248 MS.gene57186:intron 20.0%
!! GACAATTATTATCATATAAG+GGG - chr5.3:9032662-9032681 MS.gene57186:intron 20.0%
!! TACAAATAAAATAAATGGCT+GGG + chr5.3:9032806-9032825 None:intergenic 20.0%
!! TATATAATAGTATTTCACCT+AGG - chr5.3:9032830-9032849 MS.gene57186:intron 20.0%
!! TTACAAATAAAATAAATGGC+TGG + chr5.3:9032807-9032826 None:intergenic 20.0%
!! TTTATTTGCATGAAATACAA+TGG + chr5.3:9033006-9033025 None:intergenic 20.0%
! GATTGTCTTAAATAATCACT+TGG - chr5.3:9032228-9032247 MS.gene57186:intron 25.0%
! GGTCAGTTATAAAAAAATTG+AGG - chr5.3:9031795-9031814 MS.gene57186:intron 25.0%
! TATTCATTGTTTATAGTCAG+AGG + chr5.3:9032715-9032734 None:intergenic 25.0%
! TCCAAATCTAAATTAGAATC+AGG + chr5.3:9032948-9032967 None:intergenic 25.0%
! TCCTGATTCTAATTTAGATT+TGG - chr5.3:9032944-9032963 MS.gene57186:CDS 25.0%
! TCTAGTGATATTAATTGCAA+AGG + chr5.3:9032599-9032618 None:intergenic 25.0%
! TTGAATCTATTTACATTGGA+TGG - chr5.3:9033102-9033121 MS.gene57186:CDS 25.0%
! TTGCAATTAATATCACTAGA+TGG - chr5.3:9032599-9032618 MS.gene57186:intron 25.0%
!! ATATAATGCATGAGTTGAAT+AGG + chr5.3:9032176-9032195 None:intergenic 25.0%
!! ATTTCATTTGGAAGTTTTTC+AGG - chr5.3:9031574-9031593 MS.gene57186:intron 25.0%
!! GCTTTTGAATCTATTTACAT+TGG - chr5.3:9033098-9033117 MS.gene57186:CDS 25.0%
!!! TTTTAGTGTTTTTGTTGATC+TGG - chr5.3:9032025-9032044 MS.gene57186:intron 25.0%
AAAATCAATGAAAGAACTCG+AGG + chr5.3:9032204-9032223 None:intergenic 30.0%
AAATAGATTCAAAAGCTCTC+AGG + chr5.3:9033094-9033113 None:intergenic 30.0%
AAATCAATGAAAGAACTCGA+GGG + chr5.3:9032203-9032222 None:intergenic 30.0%
AACTAGATTGTACATCATCA+TGG + chr5.3:9032925-9032944 None:intergenic 30.0%
AACTTCCAAATGAAATTTGG+AGG + chr5.3:9031570-9031589 None:intergenic 30.0%
ACAAATAACAATCCAACATC+AGG + chr5.3:9031938-9031957 None:intergenic 30.0%
AGACAATATGCAAACAAGAA+CGG + chr5.3:9033175-9033194 None:intergenic 30.0%
AGCTGACATAAAAATTTCAG+AGG - chr5.3:9032310-9032329 MS.gene57186:intron 30.0%
ATGATATAACGAAGCTGTAT+AGG - chr5.3:9031231-9031250 MS.gene57186:CDS 30.0%
CTAGAACAAAATCATCAAAG+AGG + chr5.3:9031970-9031989 None:intergenic 30.0%
GACAAGTTGTTAAGATAATC+CGG - chr5.3:9033373-9033392 MS.gene57186:CDS 30.0%
TACTGCTTTAATCTGTCTAA+TGG - chr5.3:9033144-9033163 MS.gene57186:CDS 30.0%
TATTGCCTCCAAATTTCATT+TGG - chr5.3:9031562-9031581 MS.gene57186:intron 30.0%
TGTTTATAGTCAGAGGAAAA+TGG + chr5.3:9032708-9032727 None:intergenic 30.0%
! AAGCTTTTAGATGTATTCTC+AGG - chr5.3:9032464-9032483 MS.gene57186:intron 30.0%
! GATCAATCAATCAAGTTTTG+TGG - chr5.3:9031610-9031629 MS.gene57186:intron 30.0%
! GATTTTATAGTGCATAAGTC+TGG - chr5.3:9032339-9032358 MS.gene57186:intron 30.0%
! TGTCTTTCTTAGCTTTCTTT+AGG + chr5.3:9032646-9032665 None:intergenic 30.0%
! TTTGAAGTACTCTGTCATTT+AGG + chr5.3:9032508-9032527 None:intergenic 30.0%
! TTTTAACCTTTCTTCTTTCC+TGG - chr5.3:9032897-9032916 MS.gene57186:CDS 30.0%
!! AGTTTTGTGGTGATTGTTAA+TGG - chr5.3:9031623-9031642 MS.gene57186:intron 30.0%
!! CAGAAATTTTTCAAATGCCT+AGG + chr5.3:9032850-9032869 None:intergenic 30.0%
!! CTATAAAGCATTTCCCTTTT+GGG - chr5.3:9032763-9032782 MS.gene57186:intron 30.0%
!! TATAAAGCATTTCCCTTTTG+GGG - chr5.3:9032764-9032783 MS.gene57186:intron 30.0%
AAGACATAAATCTGGTCAGA+GGG + chr5.3:9031407-9031426 None:intergenic 35.0%
AATCAATGAAAGAACTCGAG+GGG + chr5.3:9032202-9032221 None:intergenic 35.0%
AATCGAATGAGTACACTTGA+TGG - chr5.3:9031845-9031864 MS.gene57186:intron 35.0%
AATGTTGTAGTACCTGATGT+TGG - chr5.3:9031923-9031942 MS.gene57186:intron 35.0%
ACTTAAAGGATAAAGGGTTG+GGG + chr5.3:9032130-9032149 None:intergenic 35.0%
ATCTGACAAACTTTCACTAC+AGG + chr5.3:9033047-9033066 None:intergenic 35.0%
ATGCCATAATATCTTGCAAC+TGG + chr5.3:9033345-9033364 None:intergenic 35.0%
CTAGATGGAACTATTCCATT+AGG - chr5.3:9032614-9032633 MS.gene57186:intron 35.0%
GACTTAAAGGATAAAGGGTT+GGG + chr5.3:9032131-9032150 None:intergenic 35.0%
GATCCAGTTGCAAGATATTA+TGG - chr5.3:9033339-9033358 MS.gene57186:CDS 35.0%
TAGATGTATTCTCAGGTTAG+TGG - chr5.3:9032471-9032490 MS.gene57186:intron 35.0%
TATGTCGAAAGAAGAGTTCA+AGG - chr5.3:9031319-9031338 MS.gene57186:CDS 35.0%
TGATGGCATTGTAACATTGA+AGG - chr5.3:9031862-9031881 MS.gene57186:intron 35.0%
TTCTTTAGGTGTTCACCTAA+TGG + chr5.3:9032632-9032651 None:intergenic 35.0%
! AAATTGTACTGATGCTGACA+TGG - chr5.3:9033223-9033242 MS.gene57186:CDS 35.0%
! AAGAGTTCAAGGAGAAGTAT+GGG - chr5.3:9031330-9031349 MS.gene57186:intron 35.0%
! ATGCATGAGTTGAATAGGAA+AGG + chr5.3:9032171-9032190 None:intergenic 35.0%
! TATTTGTACTGATGCTGACA+TGG - chr5.3:9033260-9033279 MS.gene57186:CDS 35.0%
! TCTGGAAATTAGAGCGATTT+TGG - chr5.3:9032357-9032376 MS.gene57186:intron 35.0%
! TGCATGAGTTGAATAGGAAA+GGG + chr5.3:9032170-9032189 None:intergenic 35.0%
! TTTACATTGGATGGTTCTAC+TGG - chr5.3:9033111-9033130 MS.gene57186:CDS 35.0%
!! GCTATAAAGCATTTCCCTTT+TGG - chr5.3:9032762-9032781 MS.gene57186:intron 35.0%
!! TTATAGCAGTTTGCTGTGAT+CGG + chr5.3:9032749-9032768 None:intergenic 35.0%
AATGGCTGGGATAAGTAAAG+AGG + chr5.3:9032793-9032812 None:intergenic 40.0%
ACTGACCTGAGTTTCTTTGA+CGG + chr5.3:9031782-9031801 None:intergenic 40.0%
AGAAGACCTTGTCATCAACA+AGG - chr5.3:9031367-9031386 MS.gene57186:intron 40.0%
AGATATTATGGCATGAAGCG+TGG - chr5.3:9033351-9033370 MS.gene57186:CDS 40.0%
ATACACCGTCAAAGAAACTC+AGG - chr5.3:9031774-9031793 MS.gene57186:intron 40.0%
ATCAATGAAAGAACTCGAGG+GGG + chr5.3:9032201-9032220 None:intergenic 40.0%
ATCATAGACTAGTGAGAGTG+AGG + chr5.3:9032550-9032569 None:intergenic 40.0%
ATGGAACCAGGAAAGAAGAA+AGG + chr5.3:9032906-9032925 None:intergenic 40.0%
CCAGATTTATGTCTTCTTCC+CGG - chr5.3:9031412-9031431 MS.gene57186:intron 40.0%
CGACTTAAAGGATAAAGGGT+TGG + chr5.3:9032132-9032151 None:intergenic 40.0%
CTTAAAGGATAAAGGGTTGG+GGG + chr5.3:9032129-9032148 None:intergenic 40.0%
GAAGACATAAATCTGGTCAG+AGG + chr5.3:9031408-9031427 None:intergenic 40.0%
GAAGAGTTCAAGGAGAAGTA+TGG - chr5.3:9031329-9031348 MS.gene57186:intron 40.0%
GGCATTGTAACATTGAAGGA+AGG - chr5.3:9031866-9031885 MS.gene57186:intron 40.0%
GTGGTGATTGTTAATGGTTG+AGG - chr5.3:9031629-9031648 MS.gene57186:intron 40.0%
TAACCTCAAAATCTCCAACG+AGG + chr5.3:9031298-9031317 None:intergenic 40.0%
TAACGAAGCTGTATAGGATC+CGG - chr5.3:9031237-9031256 MS.gene57186:CDS 40.0%
TATAGTCAGAGGAAAATGGC+TGG + chr5.3:9032704-9032723 None:intergenic 40.0%
TATGTCAGCTTGATGTTGCA+GGG + chr5.3:9032300-9032319 None:intergenic 40.0%
TTAAAGGATAAAGGGTTGGG+GGG + chr5.3:9032128-9032147 None:intergenic 40.0%
TTACTGTTGCAGATTGTCAG+CGG - chr5.3:9032270-9032289 MS.gene57186:intron 40.0%
TTATGTCAGCTTGATGTTGC+AGG + chr5.3:9032301-9032320 None:intergenic 40.0%
TTGTACATCATCATGGAACC+AGG + chr5.3:9032918-9032937 None:intergenic 40.0%
! AGAGTTCAAGGAGAAGTATG+GGG - chr5.3:9031331-9031350 MS.gene57186:intron 40.0%
! TTACCTCGTTGGAGATTTTG+AGG - chr5.3:9031292-9031311 MS.gene57186:CDS 40.0%
!!! GTCAGAGGGATTGTCTTTTT+TGG + chr5.3:9031393-9031412 None:intergenic 40.0%
!!! TTTTGGCCTTGTTGATGACA+AGG + chr5.3:9031376-9031395 None:intergenic 40.0%
AAGCACGCACACACTAACAA+CGG + chr5.3:9031658-9031677 None:intergenic 45.0%
AGCGGCGACTTAAAGGATAA+AGG + chr5.3:9032137-9032156 None:intergenic 45.0%
AGTAAAGAGGATGCCCCAAA+AGG + chr5.3:9032780-9032799 None:intergenic 45.0%
AGTTGAATAGGAAAGGGCTG+AGG + chr5.3:9032164-9032183 None:intergenic 45.0%
ATTCTCGGAGTTCATGCGTT+TGG + chr5.3:9031477-9031496 None:intergenic 45.0%
CCGGGAAGAAGACATAAATC+TGG + chr5.3:9031415-9031434 None:intergenic 45.0%
GAACTCCGAGAATGTCTACA+GGG - chr5.3:9031484-9031503 MS.gene57186:intron 45.0%
GATTTATGTCTTCTTCCCGG+AGG - chr5.3:9031415-9031434 MS.gene57186:intron 45.0%
GCGGCGACTTAAAGGATAAA+GGG + chr5.3:9032136-9032155 None:intergenic 45.0%
GTAAAGAGGATGCCCCAAAA+GGG + chr5.3:9032779-9032798 None:intergenic 45.0%
TATCTTCCTGCAGTCTCACT+TGG + chr5.3:9033399-9033418 None:intergenic 45.0%
TGAACTCCGAGAATGTCTAC+AGG - chr5.3:9031483-9031502 MS.gene57186:intron 45.0%
TGACAAGGTCTTCTCTCTTC+AGG + chr5.3:9031361-9031380 None:intergenic 45.0%
TGTGCTTGTGCCAAAACATC+AGG - chr5.3:9031714-9031733 MS.gene57186:intron 45.0%
TTATCCTTTAAGTCGCCGCT+CGG - chr5.3:9032137-9032156 MS.gene57186:intron 45.0%
TTCTCAGCTACCTAGAATCC+AGG - chr5.3:9033311-9033330 MS.gene57186:CDS 45.0%
! TCAGTCAGCACCTGATGTTT+TGG + chr5.3:9031727-9031746 None:intergenic 45.0%
! TTTGAGATGACCGATAGCGA+GGG + chr5.3:9032105-9032124 None:intergenic 45.0%
AAAGCTCTCAGGACAAGCGA+AGG + chr5.3:9033083-9033102 None:intergenic 50.0%
CCAGACCAGACTTACTAACC+AGG - chr5.3:9031520-9031539 MS.gene57186:intron 50.0%
CCAGACTTACTAACCAGGCA+CGG - chr5.3:9031525-9031544 MS.gene57186:intron 50.0%
CCTGGTTAGTAAGTCTGGTC+TGG + chr5.3:9031523-9031542 None:intergenic 50.0%
CGTGACAGGAATTACCTCGT+TGG - chr5.3:9031281-9031300 MS.gene57186:CDS 50.0%
GACGGTGTATCTCTCGAGTA+AGG + chr5.3:9031764-9031783 None:intergenic 50.0%
GATGGCCCTGTAGACATTCT+CGG + chr5.3:9031492-9031511 None:intergenic 50.0%
GCTACCTAGAATCCAGGTGA+CGG - chr5.3:9033317-9033336 MS.gene57186:CDS 50.0%
GCTGTATAGGATCCGGAAGA+CGG - chr5.3:9031244-9031263 MS.gene57186:CDS 50.0%
TCAGGACAAGCGAAGGACAA+GGG + chr5.3:9033076-9033095 None:intergenic 50.0%
TCTGGTCTGGCAAACGATGA+TGG + chr5.3:9031510-9031529 None:intergenic 50.0%
TGATGGAGATGCTTCGTGAC+AGG - chr5.3:9031267-9031286 MS.gene57186:CDS 50.0%
TGGTGTAAGTCCTGAAGGTG+TGG + chr5.3:9031457-9031476 None:intergenic 50.0%
TTGAGATGACCGATAGCGAG+GGG + chr5.3:9032104-9032123 None:intergenic 50.0%
TTGCCTATTCCCCTCGCTAT+CGG - chr5.3:9032092-9032111 MS.gene57186:intron 50.0%
! GTTTGAGATGACCGATAGCG+AGG + chr5.3:9032106-9032125 None:intergenic 50.0%
!! GCGTTTGGTGTAAGTCCTGA+AGG + chr5.3:9031462-9031481 None:intergenic 50.0%
ACGCCAACCTTGTCTTCCTC+CGG + chr5.3:9031434-9031453 None:intergenic 55.0%
CAGAGATACTGTTCCGTGCC+TGG + chr5.3:9031541-9031560 None:intergenic 55.0%
CCGTGCCTGGTTAGTAAGTC+TGG + chr5.3:9031528-9031547 None:intergenic 55.0%
CTCAGGACAAGCGAAGGACA+AGG + chr5.3:9033077-9033096 None:intergenic 55.0%
CTTCTTCCCGGAGGAAGACA+AGG - chr5.3:9031424-9031443 MS.gene57186:intron 55.0%
GCATCTCCATCACCGTCTTC+CGG + chr5.3:9031259-9031278 None:intergenic 55.0%
GGATCCGTCACCTGGATTCT+AGG + chr5.3:9033324-9033343 None:intergenic 55.0%
GTTAGTGTGTGCGTGCTTGC+AGG - chr5.3:9031660-9031679 MS.gene57186:intron 55.0%
TAGGATCCGGAAGACGGTGA+TGG - chr5.3:9031250-9031269 MS.gene57186:CDS 55.0%
TGACCGATAGCGAGGGGAAT+AGG + chr5.3:9032098-9032117 None:intergenic 55.0%
TTCCCGGAGGAAGACAAGGT+TGG - chr5.3:9031428-9031447 MS.gene57186:intron 55.0%
TTCCTGCAGTCTCACTTGGC+CGG + chr5.3:9033395-9033414 None:intergenic 55.0%
TTGCAACTGGATCCGTCACC+TGG + chr5.3:9033332-9033351 None:intergenic 55.0%
AGGACCGAGCGGCGACTTAA+AGG + chr5.3:9032144-9032163 None:intergenic 60.0%
AGGTTGGCGTCCACACCTTC+AGG - chr5.3:9031444-9031463 MS.gene57186:intron 60.0%
AGTGTGTGCGTGCTTGCAGG+AGG - chr5.3:9031663-9031682 MS.gene57186:intron 60.0%
ATCCGGCCAAGTGAGACTGC+AGG - chr5.3:9033390-9033409 MS.gene57186:CDS 60.0%
CGCCAACCTTGTCTTCCTCC+GGG + chr5.3:9031433-9031452 None:intergenic 60.0%
GGAAAGGGCTGAGGACCGAG+CGG + chr5.3:9032155-9032174 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 9031215 9033443 9031215 ID=MS.gene57186
chr5.3 mRNA 9031215 9033443 9031215 ID=MS.gene57186.t1;Parent=MS.gene57186
chr5.3 exon 9033063 9033443 9033063 ID=MS.gene57186.t1.exon1;Parent=MS.gene57186.t1
chr5.3 CDS 9033063 9033443 9033063 ID=cds.MS.gene57186.t1;Parent=MS.gene57186.t1
chr5.3 exon 9032863 9032976 9032863 ID=MS.gene57186.t1.exon2;Parent=MS.gene57186.t1
chr5.3 CDS 9032863 9032976 9032863 ID=cds.MS.gene57186.t1;Parent=MS.gene57186.t1
chr5.3 exon 9031215 9031340 9031215 ID=MS.gene57186.t1.exon3;Parent=MS.gene57186.t1
chr5.3 CDS 9031215 9031340 9031215 ID=cds.MS.gene57186.t1;Parent=MS.gene57186.t1
Gene Sequence

>MS.gene57186

ATGGTGTTTTCGGAGGATGATATAACGAAGCTGTATAGGATCCGGAAGACGGTGATGGAGATGCTTCGTGACAGGAATTACCTCGTTGGAGATTTTGAGGTTAATATGTCGAAAGAAGAGTTCAAGGAGAAGTATGGGGAGAACCTGAAGAGAGAAGACCTTGTCATCAACAAGGCCAAAAAAGACAATCCCTCTGACCAGATTTATGTCTTCTTCCCGGAGGAAGACAAGGTTGGCGTCCACACCTTCAGGACTTACACCAAACGCATGAACTCCGAGAATGTCTACAGGGCCATCATCGTTTGCCAGACCAGACTTACTAACCAGGCACGGAACAGTATCTCTGATATTGCCTCCAAATTTCATTTGGAAGTTTTTCAGGTAATTCATCAATCGATCAATCAATCAAGTTTTGTGGTGATTGTTAATGGTTGAGGTAACCGTTGTTAGTGTGTGCGTGCTTGCAGGAGGCTGAATTGCTCGTTAATGTAAGATATCATGTGCTTGTGCCAAAACATCAGGTGCTGACTGACAATGAGAAGAAAACCTTACTCGAGAGATACACCGTCAAAGAAACTCAGGTCAGTTATAAAAAAATTGAGGAAATTTTGTGTTATTTAGAATGTGACTAATCGAATGAGTACACTTGATGGCATTGTAACATTGAAGGAAGGACAAAGTGAAAATGTAAACTATTAGGACTTTGTTAATGTTGTAGTACCTGATGTTGGATTGTTATTTGTATTTTAGTTCCTCTTTGATGATTTTGTTCTAGCTTATATCATTATGTTAAATTGTTTATTTTCTTTCTTTTAGTGTTTTTGTTGATCTGGAAAATAGTGAATTAACTTCAGAATGAAGTGAGCATGAAAGAGTTTTGCCTATTCCCCTCGCTATCGGTCATCTCAAACCCCCCAACCCTTTATCCTTTAAGTCGCCGCTCGGTCCTCAGCCCTTTCCTATTCAACTCATGCATTATATCTCCCCCTCGAGTTCTTTCATTGATTTTCTTTGATTGTCTTAAATAATCACTTGGGTGAGTATTTAGATAGAGCTTACTGTTGCAGATTGTCAGCGGCGTACCCTGCAACATCAAGCTGACATAAAAATTTCAGAGGAAATCAGATTTTATAGTGCATAAGTCTGGAAATTAGAGCGATTTTGGTAGTACACACTAAGATTGTTGAGTGATTTAAAGCTGAATATCGTGTATAATACTATTAATTATAGAAAATTAAGTGTTCTGTCTAAGCTTTTAGATGTATTCTCAGGTTAGTGGATACTGACTTTCCTAAATGACAGAGTACTTCAAATATAACTTCATCATTTGTACCTCACTCTCACTAGTCTATGATTTCGTAAAAATTAAAATATATGATGTCCTTTGCAATTAATATCACTAGATGGAACTATTCCATTAGGTGAACACCTAAAGAAAGCTAAGAAAGACAATTATTATCATATAAGGGGAAACAACTTACTTATTCCAGCCATTTTCCTCTGACTATAAACAATGAATAGCTACAATCAGCCGATCACAGCAAACTGCTATAAAGCATTTCCCTTTTGGGGCATCCTCTTTACTTATCCCAGCCATTTATTTTATTTGTAAAGTTATATAATAGTATTTCACCTAGGCATTTGAAAAATTTCTGCACACTCACACGTGCTTCATCTCTGAATTTTAACCTTTCTTCTTTCCTGGTTCCATGATGATGTACAATCTAGTTCCTGATTCTAATTTAGATTTGGATGTAATTAAGAATGCATGAAAAGCAAAATTAGCATCCATTGTATTTCATGCAAATAAAACTTCTTCATAGTTTATTCCTGTAGTGAAAGTTTGTCAGATTTGTCACCCTTGTCCTTCGCTTGTCCTGAGAGCTTTTGAATCTATTTACATTGGATGGTTCTACTGGTTTTAGTGTTTACTGCTTTAATCTGTCTAATGGATGTACCGTTCTTGTTTGCATATTGTCTTGTATGTGCAATTTATCATTCTACTACAAAATTGTACTGATGCTGACATGGTTCACTATATCTAATATTTGTACTGATGCTGACATGGTTCACTATATCTAATATTTATGGTCTGTTTCTCAGCTACCTAGAATCCAGGTGACGGATCCAGTTGCAAGATATTATGGCATGAAGCGTGGACAAGTTGTTAAGATAATCCGGCCAAGTGAGACTGCAGGAAGATATGTTACATACCGATTTGTTGTATAA
Protein sequence

>MS.gene57186.t1

MVFSEDDITKLYRIRKTVMEMLRDRNYLVGDFEVNMSKEEFKEKYGENLKREDLVINKAKKDNPSDQIYVFFPEEDKVGVHTFRTYTKRMNSENVYRAIIVCQTRLTNQARNSISDIASKFHLEVFQEAELLVNVRYHVLVPKHQVLTDNEKKTLLERYTVKETQLPRIQVTDPVARYYGMKRGQVVKIIRPSETAGRYVTYRFVV