Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046919.t1 | XP_003610652.2 | 100 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 8.90E-109 | 402.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046919.t1 | O81098 | 76.6 | 205 | 48 | 0 | 2 | 206 | 1 | 205 | 3.5e-85 | 315.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046919.t1 | G7K102 | 100.0 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 6.4e-109 | 402.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046919.t1 | MTR_5g005470 | 100.000 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 1.08e-153 | 424 |
| MS.gene046919.t1 | MTR_5g016220 | 80.488 | 205 | 40 | 0 | 2 | 206 | 127 | 331 | 6.89e-122 | 348 |
| MS.gene046919.t1 | MTR_5g016220 | 74.803 | 127 | 31 | 1 | 1 | 127 | 1 | 126 | 5.28e-62 | 196 |
| MS.gene046919.t1 | MTR_5g016200 | 81.188 | 202 | 35 | 1 | 1 | 202 | 1 | 199 | 6.08e-119 | 336 |
| MS.gene046919.t1 | MTR_6g088010 | 60.870 | 207 | 79 | 1 | 1 | 205 | 1 | 207 | 9.21e-88 | 257 |
| MS.gene046919.t1 | MTR_6g042230 | 62.621 | 206 | 76 | 1 | 1 | 206 | 1 | 205 | 3.94e-87 | 256 |
| MS.gene046919.t1 | MTR_6g088020 | 61.058 | 208 | 77 | 2 | 1 | 205 | 1 | 207 | 1.36e-84 | 249 |
| MS.gene046919.t1 | MTR_7g090220 | 40.000 | 200 | 117 | 2 | 7 | 205 | 50 | 247 | 2.55e-42 | 143 |
| MS.gene046919.t1 | MTR_3g058520 | 30.366 | 191 | 78 | 6 | 4 | 194 | 23 | 158 | 2.06e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046919.t1 | AT3G22320 | 76.585 | 205 | 48 | 0 | 2 | 206 | 1 | 205 | 2.54e-118 | 335 |
| MS.gene046919.t1 | AT5G57980 | 47.087 | 206 | 105 | 2 | 5 | 206 | 5 | 210 | 2.18e-61 | 191 |
| MS.gene046919.t1 | AT2G41340 | 39.901 | 203 | 119 | 3 | 4 | 205 | 17 | 217 | 3.15e-42 | 142 |
| MS.gene046919.t1 | AT3G57080 | 38.725 | 204 | 122 | 3 | 3 | 205 | 20 | 221 | 2.36e-41 | 140 |
| MS.gene046919.t1 | AT3G54490 | 35.323 | 201 | 127 | 2 | 7 | 206 | 35 | 233 | 2.39e-33 | 119 |
| MS.gene046919.t1 | AT2G41340 | 35.196 | 179 | 104 | 4 | 4 | 181 | 17 | 184 | 2.29e-26 | 100 |
| MS.gene046919.t1 | AT2G41340 | 37.423 | 163 | 99 | 3 | 4 | 165 | 17 | 177 | 5.24e-26 | 99.4 |
| MS.gene046919.t1 | AT3G16680 | 49.367 | 79 | 36 | 2 | 83 | 158 | 1 | 78 | 1.71e-18 | 77.0 |
Find 33 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATACCGATTTGTTGTATA+AGG | 0.225416 | 5.4:+1093463 | MS.gene046919:CDS |
| GATCCTGTTGCAAGATATTA+TGG | 0.297526 | 5.4:+1093379 | MS.gene046919:CDS |
| AATTTCAGAAACACAAGTTT+TGG | 0.351766 | 5.4:-1090014 | None:intergenic |
| TAACAACTTGTCCACGCTTC+AGG | 0.355396 | 5.4:-1093402 | None:intergenic |
| TTTGTCTTTGAAATCGTGTT+TGG | 0.360361 | 5.4:-1089795 | None:intergenic |
| AATTGCTTCCAAATTTCATT+TGG | 0.361732 | 5.4:+1090033 | MS.gene046919:CDS |
| GGATCCGTTACCTGGATTCT+AGG | 0.372756 | 5.4:-1093361 | None:intergenic |
| ACACCGACTTTGGCTTCTTC+AGG | 0.396133 | 5.4:-1089902 | None:intergenic |
| TTGCAACAGGATCCGTTACC+TGG | 0.403456 | 5.4:-1093369 | None:intergenic |
| TGTGCAGGAGGCGGAGTTGC+TGG | 0.426628 | 5.4:+1090270 | MS.gene046919:intron |
| GACAGTGTATCTCTCAAGTA+AGG | 0.434087 | 5.4:-1090356 | None:intergenic |
| AGGCCATAATATCTTGCAAC+AGG | 0.438401 | 5.4:-1093382 | None:intergenic |
| CAATGAAGACTTACACCAAC+AGG | 0.446390 | 5.4:+1089930 | MS.gene046919:CDS |
| TCGTTGAGAATCTGATGTTC+CGG | 0.447338 | 5.4:-1090319 | None:intergenic |
| GACAAGTTGTTAAGATAATC+CGG | 0.451366 | 5.4:+1093413 | MS.gene046919:CDS |
| AATCACCGACGAGGTAGTTT+CGG | 0.453235 | 5.4:-1089757 | None:intergenic |
| TTCCTGCAGTCTCACTTGGC+CGG | 0.488931 | 5.4:-1093432 | None:intergenic |
| GAAATCCTTATACAACAAAT+CGG | 0.490397 | 5.4:-1093468 | None:intergenic |
| TTTGGCAAAGGGAGTAAGAC+TGG | 0.523494 | 5.4:-1089996 | None:intergenic |
| TATCTTCCTGCAGTCTCACT+TGG | 0.525204 | 5.4:-1093436 | None:intergenic |
| CACGATTTCAAAGACAAATA+CGG | 0.530990 | 5.4:+1089800 | MS.gene046919:CDS |
| ATTCTCAGAATTCATCCTGT+TGG | 0.552863 | 5.4:-1089945 | None:intergenic |
| TTCTCAGCTACCTAGAATCC+AGG | 0.556727 | 5.4:+1093351 | MS.gene046919:intron |
| AAAAGAGCATGTGCTTGTGC+CGG | 0.568897 | 5.4:+1090300 | MS.gene046919:CDS |
| AGATATTATGGCCTGAAGCG+TGG | 0.578373 | 5.4:+1093391 | MS.gene046919:CDS |
| ATCCGGCCAAGTGAGACTGC+AGG | 0.593487 | 5.4:+1093430 | MS.gene046919:CDS |
| AAGACATAGATCTGATCAGA+AGG | 0.597739 | 5.4:-1089875 | None:intergenic |
| ATACACTGTCAAGGAAACTC+AGG | 0.607183 | 5.4:+1090369 | MS.gene046919:CDS |
| TTTCCTGAAGAAGCCAAAGT+CGG | 0.608753 | 5.4:+1089899 | MS.gene046919:CDS |
| ACTTGAGAGATACACTGTCA+AGG | 0.648812 | 5.4:+1090360 | MS.gene046919:CDS |
| GCTACCTAGAATCCAGGTAA+CGG | 0.648864 | 5.4:+1093357 | MS.gene046919:intron |
| AAAGACCGAAACTACCTCGT+CGG | 0.681273 | 5.4:+1089752 | MS.gene046919:CDS |
| TGAGTTCGAAATCACCGACG+AGG | 0.765537 | 5.4:-1089766 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTATATCTAATATTTAT+GGG | + | chr5.4:1093324-1093343 | MS.gene046919:intron | 10.0% |
| !! | TTCATTATATCTAATATTTA+TGG | + | chr5.4:1093323-1093342 | MS.gene046919:intron | 10.0% |
| !! | AAAAAAAAACATAGAAACAT+GGG | - | chr5.4:1092733-1092752 | None:intergenic | 15.0% |
| !! | AATGATTACATAAATGAAAT+AGG | + | chr5.4:1092192-1092211 | MS.gene046919:intron | 15.0% |
| !!! | GATTTTCAAAGTAATATTAT+AGG | + | chr5.4:1092493-1092512 | MS.gene046919:intron | 15.0% |
| !! | AAAAACTTCCAAATGAAATT+TGG | - | chr5.4:1090044-1090063 | None:intergenic | 20.0% |
| !! | AAAATGTAAGTGATTTATCT+AGG | + | chr5.4:1091362-1091381 | MS.gene046919:intron | 20.0% |
| !! | AATTCTTAAATAGTCTCATT+TGG | + | chr5.4:1091075-1091094 | MS.gene046919:intron | 20.0% |
| !! | ACATTCAATCAATTCAATAA+GGG | - | chr5.4:1090710-1090729 | None:intergenic | 20.0% |
| !! | ATAAGTTGTTTATCAAAATC+GGG | - | chr5.4:1090446-1090465 | None:intergenic | 20.0% |
| !! | ATTCTTAAATAGTCTCATTT+GGG | + | chr5.4:1091076-1091095 | MS.gene046919:intron | 20.0% |
| !! | GAAAAAAAAACATAGAAACA+TGG | - | chr5.4:1092734-1092753 | None:intergenic | 20.0% |
| !! | GATAAGTTGTTTATCAAAAT+CGG | - | chr5.4:1090447-1090466 | None:intergenic | 20.0% |
| !! | GATATTATAGTATTTCAGTT+AGG | + | chr5.4:1092879-1092898 | MS.gene046919:intron | 20.0% |
| !! | TGAGAAAAATTTGATAAAGA+CGG | - | chr5.4:1092600-1092619 | None:intergenic | 20.0% |
| !! | TTAAGAATTAAGATGATCAA+AGG | - | chr5.4:1091064-1091083 | None:intergenic | 20.0% |
| !! | TTGAAATATTAATAGAGTCA+GGG | + | chr5.4:1092805-1092824 | MS.gene046919:intron | 20.0% |
| !!! | ATAAATCACTTACATTTTCT+TGG | - | chr5.4:1091360-1091379 | None:intergenic | 20.0% |
| !!! | GATTTTGAATCTTTTTAGAT+TGG | + | chr5.4:1093143-1093162 | MS.gene046919:intron | 20.0% |
| !!! | GTTTTTTGTGTTTTTAGTAT+GGG | + | chr5.4:1090413-1090432 | MS.gene046919:intron | 20.0% |
| !!! | TATTAACCGACATAATTTTT+GGG | - | chr5.4:1090661-1090680 | None:intergenic | 20.0% |
| !!! | TCATTTTCTCAAATTATCAT+CGG | - | chr5.4:1090161-1090180 | None:intergenic | 20.0% |
| !!! | TGAATCTTTTAACTTAGATT+TGG | + | chr5.4:1091172-1091191 | MS.gene046919:intron | 20.0% |
| !!! | TGTTTTTTGTGTTTTTAGTA+TGG | + | chr5.4:1090412-1090431 | MS.gene046919:intron | 20.0% |
| !!! | TTATTAACCGACATAATTTT+TGG | - | chr5.4:1090662-1090681 | None:intergenic | 20.0% |
| !!! | TTTGAAATATTAATAGAGTC+AGG | + | chr5.4:1092804-1092823 | MS.gene046919:intron | 20.0% |
| !!! | TTTTGAAATATTAACAGAGT+CGG | - | chr5.4:1092571-1092590 | None:intergenic | 20.0% |
| !!! | TTTTTGCTCATGATTTTTTT+AGG | - | chr5.4:1092472-1092491 | None:intergenic | 20.0% |
| ! | AAGATAATTAAGATGATCAG+CGG | - | chr5.4:1091014-1091033 | None:intergenic | 25.0% |
| ! | AAGTGAAAATGTAAGCTATT+AGG | + | chr5.4:1090763-1090782 | MS.gene046919:intron | 25.0% |
| ! | AATTGCTTCCAAATTTCATT+TGG | + | chr5.4:1090033-1090052 | MS.gene046919:CDS | 25.0% |
| ! | ACAAAATGCTATCATCAAAA+AGG | - | chr5.4:1090853-1090872 | None:intergenic | 25.0% |
| ! | AGTGAAAATGTAAGCTATTA+GGG | + | chr5.4:1090764-1090783 | MS.gene046919:intron | 25.0% |
| ! | ATAAACCGCATAAACAAATT+AGG | - | chr5.4:1090096-1090115 | None:intergenic | 25.0% |
| ! | CACATTCAATCAATTCAATA+AGG | - | chr5.4:1090711-1090730 | None:intergenic | 25.0% |
| ! | CCAAAATTACTTCAATTTCT+AGG | - | chr5.4:1091283-1091302 | None:intergenic | 25.0% |
| ! | GTATTACTATTTACTGAAAG+TGG | + | chr5.4:1091302-1091321 | MS.gene046919:intron | 25.0% |
| ! | GTTATTTATACCTGACATAT+TGG | + | chr5.4:1090129-1090148 | MS.gene046919:intron | 25.0% |
| ! | TAAACCGCATAAACAAATTA+GGG | - | chr5.4:1090095-1090114 | None:intergenic | 25.0% |
| ! | TCTATTTGCGTTAAATACAA+TGG | - | chr5.4:1093054-1093073 | None:intergenic | 25.0% |
| ! | TGAGAAACTTTAGATAAAGA+CGG | + | chr5.4:1092774-1092793 | MS.gene046919:intron | 25.0% |
| ! | TTACTATAACACATCTGTAT+TGG | - | chr5.4:1092119-1092138 | None:intergenic | 25.0% |
| ! | TTCAACAATTACAGTGAAAA+TGG | + | chr5.4:1092429-1092448 | MS.gene046919:intron | 25.0% |
| ! | TTTGTCATAAAATTGTCGTT+GGG | + | chr5.4:1093121-1093140 | MS.gene046919:intron | 25.0% |
| !! | AATTTCAGAAACACAAGTTT+TGG | - | chr5.4:1090017-1090036 | None:intergenic | 25.0% |
| !! | ATTTCATTTGGAAGTTTTTC+AGG | + | chr5.4:1090045-1090064 | MS.gene046919:CDS | 25.0% |
| !! | CATTGTTTATTTCTTAGTGT+TGG | + | chr5.4:1093081-1093100 | MS.gene046919:intron | 25.0% |
| !! | CCTAGAAATTGAAGTAATTT+TGG | + | chr5.4:1091280-1091299 | MS.gene046919:intron | 25.0% |
| !! | TTTGAAATATTAACAGAGTC+GGG | - | chr5.4:1092570-1092589 | None:intergenic | 25.0% |
| !! | TTTTGTCATAAAATTGTCGT+TGG | + | chr5.4:1093120-1093139 | MS.gene046919:intron | 25.0% |
| !!! | ATCAGAAGGTTTATCTTTTT+TGG | - | chr5.4:1089864-1089883 | None:intergenic | 25.0% |
| !!! | TAAACCCTAATTTGTTTATG+CGG | + | chr5.4:1090088-1090107 | MS.gene046919:intron | 25.0% |
| !!! | TTTTACTGCTTTTGTTGATT+TGG | + | chr5.4:1090893-1090912 | MS.gene046919:intron | 25.0% |
| AACACATCTGTATTGGAAAA+GGG | - | chr5.4:1091998-1092017 | None:intergenic | 30.0% | |
| AAGAGGAAATCAGATGATAT+AGG | + | chr5.4:1091254-1091273 | MS.gene046919:intron | 30.0% | |
| AATTGATTGAATGTGTGTGA+TGG | + | chr5.4:1090716-1090735 | MS.gene046919:intron | 30.0% | |
| ACTAAGAAATGCTTCTAAAC+AGG | - | chr5.4:1091824-1091843 | None:intergenic | 30.0% | |
| AGAAACTTTAGATAAAGACG+GGG | + | chr5.4:1092776-1092795 | MS.gene046919:intron | 30.0% | |
| CAAATCTTCCTTGACTTAAT+TGG | - | chr5.4:1091138-1091157 | None:intergenic | 30.0% | |
| CAACAAAAGCAGTAAAAGAA+AGG | - | chr5.4:1090890-1090909 | None:intergenic | 30.0% | |
| CACGATTTCAAAGACAAATA+CGG | + | chr5.4:1089800-1089819 | MS.gene046919:CDS | 30.0% | |
| CATTAGACAAAGAATGATCA+AGG | - | chr5.4:1093215-1093234 | None:intergenic | 30.0% | |
| CTTGATCATTCTTTGTCTAA+TGG | + | chr5.4:1093213-1093232 | MS.gene046919:intron | 30.0% | |
| GAAAATCACTTACAAAGACA+GGG | - | chr5.4:1092538-1092557 | None:intergenic | 30.0% | |
| GACAAGTTGTTAAGATAATC+CGG | + | chr5.4:1093413-1093432 | MS.gene046919:CDS | 30.0% | |
| GAGAAACTTTAGATAAAGAC+GGG | + | chr5.4:1092775-1092794 | MS.gene046919:intron | 30.0% | |
| GCATTTGAAGATTAATTCTC+AGG | + | chr5.4:1091384-1091403 | MS.gene046919:intron | 30.0% | |
| TAACACATCTGTATTGGAAA+AGG | - | chr5.4:1091999-1092018 | None:intergenic | 30.0% | |
| TAACTAGGAAAGAAAGATGA+AGG | - | chr5.4:1092948-1092967 | None:intergenic | 30.0% | |
| TACTTTATCATCGTGTAACT+AGG | - | chr5.4:1092963-1092982 | None:intergenic | 30.0% | |
| TAGTCTCCCAAAAATTATGT+CGG | + | chr5.4:1090652-1090671 | MS.gene046919:intron | 30.0% | |
| TCACTATAACACATCTGTAT+TGG | - | chr5.4:1092005-1092024 | None:intergenic | 30.0% | |
| TGAAAATCACTTACAAAGAC+AGG | - | chr5.4:1092539-1092558 | None:intergenic | 30.0% | |
| TGTGTTATAGTGAGTTAACT+TGG | + | chr5.4:1092012-1092031 | MS.gene046919:intron | 30.0% | |
| TTAAATAGTCTCATTTGGGT+TGG | + | chr5.4:1091080-1091099 | MS.gene046919:intron | 30.0% | |
| TTACTGTTACTCGTTGTATT+TGG | - | chr5.4:1091649-1091668 | None:intergenic | 30.0% | |
| TTGAAATATTAACAGAGTCG+GGG | - | chr5.4:1092569-1092588 | None:intergenic | 30.0% | |
| ! | AATTACAGTGAAAATGGACT+TGG | + | chr5.4:1092435-1092454 | MS.gene046919:intron | 30.0% |
| ! | GTGTTGCATATTCTTACTTT+TGG | - | chr5.4:1091882-1091901 | None:intergenic | 30.0% |
| ! | TAGAATCTAGTTTGTGATTC+TGG | + | chr5.4:1092981-1093000 | MS.gene046919:intron | 30.0% |
| !! | GATTCTGGTTTAGATTTCAA+TGG | + | chr5.4:1092996-1093015 | MS.gene046919:intron | 30.0% |
| !! | TTTGTCTTTGAAATCGTGTT+TGG | - | chr5.4:1089798-1089817 | None:intergenic | 30.0% |
| !!! | GAGCTATTTTTGTAAGTTCT+TGG | + | chr5.4:1090626-1090645 | MS.gene046919:intron | 30.0% |
| !!! | GTGTTTTTAGTATGGGATTA+AGG | + | chr5.4:1090420-1090439 | MS.gene046919:intron | 30.0% |
| !!! | TATTAGGGTTTTGTTTGTTG+TGG | + | chr5.4:1090779-1090798 | MS.gene046919:intron | 30.0% |
| !!! | TTTTTTTTTCCACATGACGA+GGG | + | chr5.4:1092744-1092763 | MS.gene046919:intron | 30.0% |
| AAGACATAGATCTGATCAGA+AGG | - | chr5.4:1089878-1089897 | None:intergenic | 35.0% | |
| ACTATTTACTGAAAGTGGTG+AGG | + | chr5.4:1091307-1091326 | MS.gene046919:intron | 35.0% | |
| ATAGGAGTAAACCACCAATT+TGG | + | chr5.4:1092511-1092530 | MS.gene046919:intron | 35.0% | |
| ATTCTCAGAATTCATCCTGT+TGG | - | chr5.4:1089948-1089967 | None:intergenic | 35.0% | |
| CAATTCAATAAGGGTCTGTT+TGG | - | chr5.4:1090701-1090720 | None:intergenic | 35.0% | |
| CACAAGCTGTTATCATGATA+AGG | + | chr5.4:1090479-1090498 | MS.gene046919:intron | 35.0% | |
| CCTTTGTAATTAAAGCCACT+AGG | + | chr5.4:1091521-1091540 | MS.gene046919:intron | 35.0% | |
| CTATTTACTGAAAGTGGTGA+GGG | + | chr5.4:1091308-1091327 | MS.gene046919:intron | 35.0% | |
| GAAGAAGTAGTAGATGATGT+TGG | + | chr5.4:1090809-1090828 | MS.gene046919:intron | 35.0% | |
| GAGAATCACTTACAAAGACA+GGG | + | chr5.4:1092836-1092855 | MS.gene046919:intron | 35.0% | |
| GATCCTGTTGCAAGATATTA+TGG | + | chr5.4:1093379-1093398 | MS.gene046919:CDS | 35.0% | |
| GCGGTTTATAAGAGTTAGTT+AGG | + | chr5.4:1090107-1090126 | MS.gene046919:intron | 35.0% | |
| TACTCGTTGTATTTGGTTAG+AGG | - | chr5.4:1091642-1091661 | None:intergenic | 35.0% | |
| TAGACTGAGAGAAGAGAAAA+TGG | - | chr5.4:1091800-1091819 | None:intergenic | 35.0% | |
| TATCGAGTAAACCACCAATT+TGG | - | chr5.4:1092863-1092882 | None:intergenic | 35.0% | |
| TCAACTGAAGAGATGCAATT+AGG | + | chr5.4:1091763-1091782 | MS.gene046919:intron | 35.0% | |
| TGAGAATCACTTACAAAGAC+AGG | + | chr5.4:1092835-1092854 | MS.gene046919:intron | 35.0% | |
| TGATATAGCACATCGCAAAA+GGG | - | chr5.4:1091698-1091717 | None:intergenic | 35.0% | |
| TGTATTTGGTTAGAGGCAAA+TGG | - | chr5.4:1091635-1091654 | None:intergenic | 35.0% | |
| TTGATATAGCACATCGCAAA+AGG | - | chr5.4:1091699-1091718 | None:intergenic | 35.0% | |
| TTGTAATTAAAGCCACTAGG+TGG | + | chr5.4:1091524-1091543 | MS.gene046919:intron | 35.0% | |
| ! | AAGGCGGTTTTTATCACATA+AGG | + | chr5.4:1091585-1091604 | MS.gene046919:intron | 35.0% |
| ! | ACCTTTGAAAGAATTAGCAG+TGG | - | chr5.4:1091039-1091058 | None:intergenic | 35.0% |
| ! | AGGCGGTTTTTATCACATAA+GGG | + | chr5.4:1091586-1091605 | MS.gene046919:intron | 35.0% |
| ! | CCTTTGAAAGAATTAGCAGT+GGG | - | chr5.4:1091038-1091057 | None:intergenic | 35.0% |
| ! | CTCAAGTAAGGTTTTCTTCT+CGG | - | chr5.4:1090347-1090366 | None:intergenic | 35.0% |
| ! | CTTTGAAAGAATTAGCAGTG+GGG | - | chr5.4:1091037-1091056 | None:intergenic | 35.0% |
| ! | TGATGGATGTGTAATGTCAA+AGG | + | chr5.4:1090733-1090752 | MS.gene046919:intron | 35.0% |
| !! | ACATGTGTCTGAAAAGTATC+TGG | + | chr5.4:1092389-1092408 | MS.gene046919:intron | 35.0% |
| !! | AGAAACACAAGTTTTGGCAA+AGG | - | chr5.4:1090011-1090030 | None:intergenic | 35.0% |
| !! | CCTAGTGGCTTTAATTACAA+AGG | - | chr5.4:1091524-1091543 | None:intergenic | 35.0% |
| !! | GAAACACAAGTTTTGGCAAA+GGG | - | chr5.4:1090010-1090029 | None:intergenic | 35.0% |
| !! | TGGAAAAGGGTACTAATTGT+CGG | - | chr5.4:1091985-1092004 | None:intergenic | 35.0% |
| !!! | GTTTTTTTTTCCACATGACG+AGG | + | chr5.4:1092743-1092762 | MS.gene046919:intron | 35.0% |
| ACTTGAGAGATACACTGTCA+AGG | + | chr5.4:1090360-1090379 | MS.gene046919:CDS | 40.0% | |
| AGGCCATAATATCTTGCAAC+AGG | - | chr5.4:1093385-1093404 | None:intergenic | 40.0% | |
| AGTACTGCGCTTAGAATTTG+TGG | + | chr5.4:1091215-1091234 | MS.gene046919:intron | 40.0% | |
| ATACACTGTCAAGGAAACTC+AGG | + | chr5.4:1090369-1090388 | MS.gene046919:CDS | 40.0% | |
| ATTGCATCTCTTCAGTTGAG+TGG | - | chr5.4:1091762-1091781 | None:intergenic | 40.0% | |
| CAATGAAGACTTACACCAAC+AGG | + | chr5.4:1089930-1089949 | MS.gene046919:CDS | 40.0% | |
| CCCACTGCTAATTCTTTCAA+AGG | + | chr5.4:1091035-1091054 | MS.gene046919:intron | 40.0% | |
| CTTCCTTGACTTAATTGGCA+AGG | - | chr5.4:1091133-1091152 | None:intergenic | 40.0% | |
| CTTCCTTGCCAATTAAGTCA+AGG | + | chr5.4:1091127-1091146 | MS.gene046919:intron | 40.0% | |
| GAATACTATGAGTCTTCAGC+TGG | - | chr5.4:1091939-1091958 | None:intergenic | 40.0% | |
| GACACATGTTGTACGAATGA+CGG | - | chr5.4:1092378-1092397 | None:intergenic | 40.0% | |
| GACAGTGTATCTCTCAAGTA+AGG | - | chr5.4:1090359-1090378 | None:intergenic | 40.0% | |
| GGATGTGTAATGTCAAAGGT+AGG | + | chr5.4:1090737-1090756 | MS.gene046919:intron | 40.0% | |
| TACAAAGACAGGGACCAAAT+TGG | + | chr5.4:1092846-1092865 | MS.gene046919:intron | 40.0% | |
| TACAAAGACAGGGACCAAAT+TGG | - | chr5.4:1092865-1092846 | None:intergenic | 40.0% | |
| TCGTTGAGAATCTGATGTTC+CGG | - | chr5.4:1090322-1090341 | None:intergenic | 40.0% | |
| TGCTTCAGTATAACTGTTGC+TGG | + | chr5.4:1090233-1090252 | MS.gene046919:intron | 40.0% | |
| TTCAATGGAATCAAGCTAGC+AGG | + | chr5.4:1093011-1093030 | MS.gene046919:intron | 40.0% | |
| TTGGTTAGAGGCAAATGGTT+GGG | - | chr5.4:1091630-1091649 | None:intergenic | 40.0% | |
| TTTCCTGAAGAAGCCAAAGT+CGG | + | chr5.4:1089899-1089918 | MS.gene046919:CDS | 40.0% | |
| TTTGGTTAGAGGCAAATGGT+TGG | - | chr5.4:1091631-1091650 | None:intergenic | 40.0% | |
| ! | GCATTTGCATCACTGTTTTG+CGG | - | chr5.4:1089730-1089749 | None:intergenic | 40.0% |
| ! | GGGTTTGTGTCTTGTCATTT+CGG | + | chr5.4:1092349-1092368 | MS.gene046919:intron | 40.0% |
| ! | TCATTGATAGTCCTGAGTAC+AGG | + | chr5.4:1092325-1092344 | MS.gene046919:intron | 40.0% |
| !!! | CATTGTTTTCACACCGACTT+TGG | - | chr5.4:1089915-1089934 | None:intergenic | 40.0% |
| AAAGACAGGGACCAAATTGG+TGG | + | chr5.4:1092849-1092868 | MS.gene046919:intron | 45.0% | |
| AAAGACAGGGACCAAATTGG+TGG | - | chr5.4:1092868-1092849 | None:intergenic | 45.0% | |
| AAAGACCGAAACTACCTCGT+CGG | + | chr5.4:1089752-1089771 | MS.gene046919:CDS | 45.0% | |
| AATCACCGACGAGGTAGTTT+CGG | - | chr5.4:1089760-1089779 | None:intergenic | 45.0% | |
| AATGGCATAGTTCCACCTAG+TGG | - | chr5.4:1091539-1091558 | None:intergenic | 45.0% | |
| ACTGCGCTTAGAATTTGTGG+AGG | + | chr5.4:1091218-1091237 | MS.gene046919:intron | 45.0% | |
| AGATATTATGGCCTGAAGCG+TGG | + | chr5.4:1093391-1093410 | MS.gene046919:CDS | 45.0% | |
| CAAACGGAAGGTAAGAAAGG+CGG | + | chr5.4:1091569-1091588 | MS.gene046919:intron | 45.0% | |
| CAAGGAAGCTTGATGTTGCA+GGG | - | chr5.4:1091115-1091134 | None:intergenic | 45.0% | |
| CAATTAAGTCCCTCGTCATG+TGG | - | chr5.4:1092756-1092775 | None:intergenic | 45.0% | |
| CACCAAACGGAAGGTAAGAA+AGG | + | chr5.4:1091566-1091585 | MS.gene046919:intron | 45.0% | |
| CATCTCTTCAGTTGAGTGGA+CGG | - | chr5.4:1091758-1091777 | None:intergenic | 45.0% | |
| CCAGTGAGACTTGAAAGTGA+AGG | - | chr5.4:1091469-1091488 | None:intergenic | 45.0% | |
| GAGGCAGCGAAAGATTTAAG+AGG | + | chr5.4:1091237-1091256 | MS.gene046919:intron | 45.0% | |
| GCCATTAGCTGAACACCAAA+CGG | + | chr5.4:1091553-1091572 | MS.gene046919:intron | 45.0% | |
| GCTACCTAGAATCCAGGTAA+CGG | + | chr5.4:1093357-1093376 | MS.gene046919:intron | 45.0% | |
| TAACAACTTGTCCACGCTTC+AGG | - | chr5.4:1093405-1093424 | None:intergenic | 45.0% | |
| TATCTTCCTGCAGTCTCACT+TGG | - | chr5.4:1093439-1093458 | None:intergenic | 45.0% | |
| TCGGATTAACGCATCTAAGC+AGG | - | chr5.4:1092080-1092099 | None:intergenic | 45.0% | |
| TCTGTACATATGTTGCCGTC+TGG | + | chr5.4:1091730-1091749 | MS.gene046919:intron | 45.0% | |
| TTAACGCATCTAAGCAGGCA+AGG | - | chr5.4:1092075-1092094 | None:intergenic | 45.0% | |
| TTAACGCATCTACGCAGGTA+AGG | - | chr5.4:1091961-1091980 | None:intergenic | 45.0% | |
| TTAGCTGAACACCAAACGGA+AGG | + | chr5.4:1091557-1091576 | MS.gene046919:intron | 45.0% | |
| TTCTCAGCTACCTAGAATCC+AGG | + | chr5.4:1093351-1093370 | MS.gene046919:intron | 45.0% | |
| TTGGGATAAGTATGTGCTGC+TGG | - | chr5.4:1091612-1091631 | None:intergenic | 45.0% | |
| TTTGGCAAAGGGAGTAAGAC+TGG | - | chr5.4:1089999-1090018 | None:intergenic | 45.0% | |
| ! | AAAAGAGCATGTGCTTGTGC+CGG | + | chr5.4:1090300-1090319 | MS.gene046919:CDS | 45.0% |
| ! | CCTTCACTTTCAAGTCTCAC+TGG | + | chr5.4:1091466-1091485 | MS.gene046919:intron | 45.0% |
| ! | GGTCATCTCGTTCATCCTTT+TGG | + | chr5.4:1090982-1091001 | MS.gene046919:intron | 45.0% |
| ! | TTGATAGTCCTGAGTACAGG+CGG | + | chr5.4:1092328-1092347 | MS.gene046919:intron | 45.0% |
| !! | ACTGGCTTGTCTCAGCAAAA+TGG | - | chr5.4:1091912-1091931 | None:intergenic | 45.0% |
| !! | TCCGTTTGGTGTTCAGCTAA+TGG | - | chr5.4:1091557-1091576 | None:intergenic | 45.0% |
| !! | TCGGTGTTGACCAATATGTC+AGG | - | chr5.4:1090142-1090161 | None:intergenic | 45.0% |
| AACGAGATGACCAGCACAGA+GGG | - | chr5.4:1090974-1090993 | None:intergenic | 50.0% | |
| ATGTGTCCTTCTAGTCCGAG+AGG | + | chr5.4:1090198-1090217 | MS.gene046919:intron | 50.0% | |
| CGCCTTTCTTACCTTCCGTT+TGG | - | chr5.4:1091571-1091590 | None:intergenic | 50.0% | |
| GATCAGCGGAAACGTCCAAA+AGG | - | chr5.4:1091000-1091019 | None:intergenic | 50.0% | |
| GCAAGGAAGCTTGATGTTGC+AGG | - | chr5.4:1091116-1091135 | None:intergenic | 50.0% | |
| GGATCCGTTACCTGGATTCT+AGG | - | chr5.4:1093364-1093383 | None:intergenic | 50.0% | |
| TCGGATTAACGCATCTACGC+AGG | - | chr5.4:1091966-1091985 | None:intergenic | 50.0% | |
| TGAGTTCGAAATCACCGACG+AGG | - | chr5.4:1089769-1089788 | None:intergenic | 50.0% | |
| TGATAGTCCTGAGTACAGGC+GGG | + | chr5.4:1092329-1092348 | MS.gene046919:intron | 50.0% | |
| TTGCAACAGGATCCGTTACC+TGG | - | chr5.4:1093372-1093391 | None:intergenic | 50.0% | |
| !! | ACACCGACTTTGGCTTCTTC+AGG | - | chr5.4:1089905-1089924 | None:intergenic | 50.0% |
| !! | GAGTCTTCAGCTGGTTCTAC+TGG | - | chr5.4:1091930-1091949 | None:intergenic | 50.0% |
| ACACAAACCCGCCTGTACTC+AGG | - | chr5.4:1092339-1092358 | None:intergenic | 55.0% | |
| ACGAGATGACCAGCACAGAG+GGG | - | chr5.4:1090973-1090992 | None:intergenic | 55.0% | |
| GAACGAGATGACCAGCACAG+AGG | - | chr5.4:1090975-1090994 | None:intergenic | 55.0% | |
| GCACAAGCACAGACACCTCT+CGG | - | chr5.4:1090216-1090235 | None:intergenic | 55.0% | |
| GTGTGTGTGTGTGTGTGTGC+AGG | + | chr5.4:1090255-1090274 | MS.gene046919:intron | 55.0% | |
| TGACCAGCACAGAGGGGAAT+AGG | - | chr5.4:1090967-1090986 | None:intergenic | 55.0% | |
| TGTGTGTGTGTGTGTGCAGG+AGG | + | chr5.4:1090258-1090277 | MS.gene046919:intron | 55.0% | |
| TTCCTGCAGTCTCACTTGGC+CGG | - | chr5.4:1093435-1093454 | None:intergenic | 55.0% | |
| TTGCCTATTCCCCTCTGTGC+TGG | + | chr5.4:1090961-1090980 | MS.gene046919:intron | 55.0% | |
| ! | CAGACACCTCTCGGACTAGA+AGG | - | chr5.4:1090207-1090226 | None:intergenic | 55.0% |
| ATCCGGCCAAGTGAGACTGC+AGG | + | chr5.4:1093430-1093449 | MS.gene046919:CDS | 60.0% | |
| GTGTGTGTGTGTGCAGGAGG+CGG | + | chr5.4:1090261-1090280 | MS.gene046919:intron | 60.0% | |
| GTTGAGTGGACGGAGCCAGA+CGG | - | chr5.4:1091748-1091767 | None:intergenic | 60.0% | |
| TGTGCAGGAGGCGGAGTTGC+TGG | + | chr5.4:1090270-1090289 | MS.gene046919:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 1089686 | 1093483 | 1089686 | ID=MS.gene046919 |
| chr5.4 | mRNA | 1089686 | 1093483 | 1089686 | ID=MS.gene046919.t1;Parent=MS.gene046919 |
| chr5.4 | exon | 1089686 | 1090066 | 1089686 | ID=MS.gene046919.t1.exon1;Parent=MS.gene046919.t1 |
| chr5.4 | CDS | 1089686 | 1090066 | 1089686 | ID=cds.MS.gene046919.t1;Parent=MS.gene046919.t1 |
| chr5.4 | exon | 1090277 | 1090390 | 1090277 | ID=MS.gene046919.t1.exon2;Parent=MS.gene046919.t1 |
| chr5.4 | CDS | 1090277 | 1090390 | 1090277 | ID=cds.MS.gene046919.t1;Parent=MS.gene046919.t1 |
| chr5.4 | exon | 1093358 | 1093483 | 1093358 | ID=MS.gene046919.t1.exon3;Parent=MS.gene046919.t1 |
| chr5.4 | CDS | 1093358 | 1093483 | 1093358 | ID=cds.MS.gene046919.t1;Parent=MS.gene046919.t1 |
| Gene Sequence |
| Protein sequence |
