AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20260.t1 MTR_5g016220 91.220 205 18 0 2 206 127 331 3.13e-136 385
MS.gene20260.t1 MTR_5g016220 81.890 127 22 1 1 127 1 126 2.21e-68 212
MS.gene20260.t1 MTR_5g016200 90.594 202 16 1 1 202 1 199 4.03e-132 369
MS.gene20260.t1 MTR_5g005470 84.466 206 32 0 1 206 1 206 1.12e-129 363
MS.gene20260.t1 MTR_6g042230 62.621 206 76 1 1 206 1 205 6.20e-86 253
MS.gene20260.t1 MTR_6g088010 58.454 207 84 1 1 205 1 207 1.43e-84 249
MS.gene20260.t1 MTR_6g088020 58.654 208 82 2 1 205 1 207 3.89e-81 240
MS.gene20260.t1 MTR_7g090220 40.513 195 113 2 12 205 55 247 1.49e-44 149
MS.gene20260.t1 MTR_3g058520 33.508 191 72 5 4 194 23 158 3.32e-17 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20260.t1 AT3G22320 69.268 205 63 0 2 206 1 205 8.19e-106 303
MS.gene20260.t1 AT5G57980 46.117 206 107 2 5 206 5 210 2.22e-60 188
MS.gene20260.t1 AT2G41340 40.394 203 118 2 4 205 17 217 5.16e-45 149
MS.gene20260.t1 AT3G57080 35.784 204 128 2 3 205 20 221 1.70e-38 132
MS.gene20260.t1 AT3G54490 32.836 201 132 2 7 206 35 233 9.36e-32 115
MS.gene20260.t1 AT2G41340 36.313 179 102 3 4 181 17 184 2.41e-29 108
MS.gene20260.t1 AT2G41340 38.650 163 97 2 4 165 17 177 6.32e-29 107
MS.gene20260.t1 AT3G16680 46.753 77 39 1 84 158 2 78 2.16e-16 71.6

Find 55 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATACCGATTTGTTGTATA+AGG 0.225416 5.1:-8503680 None:intergenic
GAAGAGTTCAAGGAGAAGTA+TGG 0.258088 5.1:-8505778 MS.gene20260:CDS
GATCCAGTTGCAAGATATTA+TGG 0.330603 5.1:-8503764 MS.gene20260:CDS
GGATCCGTCACCTGGATTCT+AGG 0.338245 5.1:+8503782 None:intergenic
CCAGATTTATGTCTTCTTCC+CGG 0.347022 5.1:-8505695 MS.gene20260:CDS
TCAGTCAGCACCTGATGTTT+TGG 0.355896 5.1:+8505383 None:intergenic
ATGAAATAACGAAGCTGTAT+AGG 0.377457 5.1:-8505876 MS.gene20260:CDS
TATTGCCTCCAAATTTCATT+TGG 0.382348 5.1:-8505545 MS.gene20260:CDS
AGGTTGGCGTCCACACCTTC+AGG 0.394677 5.1:-8505663 MS.gene20260:CDS
CCGTGCCTGGTTAGTAAGTC+TGG 0.396665 5.1:+8505582 None:intergenic
ACTGACCTGAGTTTCTTTAA+CGG 0.397368 5.1:+8505328 None:intergenic
GCATCTCCATCACCGTCTTC+CGG 0.402383 5.1:+8505851 None:intergenic
ATGCCATAATATCTTGCAAC+TGG 0.416357 5.1:+8503761 None:intergenic
AACGGTGTATCTCTCGAGTA+AGG 0.416794 5.1:+8505346 None:intergenic
ATTCTCGGAGTTCATGCGTT+TGG 0.430411 5.1:+8505633 None:intergenic
ACGCCAACCTTGTCTTCCTC+CGG 0.433207 5.1:+8505676 None:intergenic
TTGCAACTGGATCCGTCACC+TGG 0.443610 5.1:+8503774 None:intergenic
AAGAGTTCAAGGAGAAGTAT+GGG 0.443886 5.1:-8505777 MS.gene20260:CDS
CAGAGATACTGTTCCGTGCC+TGG 0.445363 5.1:+8505569 None:intergenic
GACAAGTTGTTAAGATAATC+CGG 0.451366 5.1:-8503730 MS.gene20260:CDS
TATGTCGAAAGAAGAGTTCA+AGG 0.467664 5.1:-8505788 MS.gene20260:CDS
CCTGGTTAGTAAGTCTGGTC+TGG 0.481667 5.1:+8505587 None:intergenic
TTCCTGCAGTCTCACTTGGC+CGG 0.488931 5.1:+8503711 None:intergenic
AAAATCCTTATACAACAAAT+CGG 0.490397 5.1:+8503675 None:intergenic
TAACGAAGCTGTATAGGATC+CGG 0.497065 5.1:-8505870 MS.gene20260:CDS
GATGGCCCTGTAGACATTCT+CGG 0.502591 5.1:+8505618 None:intergenic
CCGGGAAGAAGACATAAATC+TGG 0.508593 5.1:+8505695 None:intergenic
CGCCAACCTTGTCTTCCTCC+GGG 0.510726 5.1:+8505677 None:intergenic
AACTTCCAAATGAAATTTGG+AGG 0.512170 5.1:+8505540 None:intergenic
TGTGCTTGTGCCAAAACATC+AGG 0.516165 5.1:-8505393 MS.gene20260:CDS
TCTGGTCTGGCAAACGATGA+TGG 0.521258 5.1:+8505600 None:intergenic
TATCTTCCTGCAGTCTCACT+TGG 0.525204 5.1:+8503707 None:intergenic
TGAACTCCGAGAATGTCTAC+AGG 0.539472 5.1:-8505624 MS.gene20260:CDS
GCTGTATAGGATCCGGAAGA+CGG 0.548026 5.1:-8505863 MS.gene20260:CDS
TTCTCAGCTACCTAGAATCC+AGG 0.559875 5.1:-8503792 MS.gene20260:intron
TTCCCGGAGGAAGACAAGGT+TGG 0.563167 5.1:-8505679 MS.gene20260:CDS
TAGGATCCGGAAGACGGTGA+TGG 0.567579 5.1:-8505857 MS.gene20260:CDS
TGATGGAGATGCTTCATGAC+AGG 0.572852 5.1:-8505840 MS.gene20260:CDS
CTTCTTCCCGGAGGAAGACA+AGG 0.574499 5.1:-8505683 MS.gene20260:CDS
AGAGTTCAAGGAGAAGTATG+GGG 0.574581 5.1:-8505776 MS.gene20260:CDS
AGATATTATGGCATGAAGCG+TGG 0.584475 5.1:-8503752 MS.gene20260:CDS
AAGACATAAATCTGGTCAGA+GGG 0.592633 5.1:+8505703 None:intergenic
ATCCGGCCAAGTGAGACTGC+AGG 0.593487 5.1:-8503713 MS.gene20260:CDS
CCAGACCAGACTTACTAACC+AGG 0.596564 5.1:-8505587 MS.gene20260:CDS
GCGTTTGGTGTAAGTCCTGA+AGG 0.608662 5.1:+8505648 None:intergenic
ATACACCGTTAAAGAAACTC+AGG 0.619813 5.1:-8505333 MS.gene20260:intron
CATGACAGGAATTACCTCGT+TGG 0.635368 5.1:-8505826 MS.gene20260:CDS
GAAGACATAAATCTGGTCAG+AGG 0.641158 5.1:+8505702 None:intergenic
CCAGACTTACTAACCAGGCA+CGG 0.642546 5.1:-8505582 MS.gene20260:CDS
GCTACCTAGAATCCAGGTGA+CGG 0.654774 5.1:-8503786 MS.gene20260:CDS
TGGTGTAAGTCCTGAAGGTG+TGG 0.659671 5.1:+8505653 None:intergenic
AGAAGACCTTGTCATCAACA+AGG 0.684606 5.1:-8505740 MS.gene20260:CDS
GAACTCCGAGAATGTCTACA+GGG 0.693592 5.1:-8505623 MS.gene20260:CDS
GATTTATGTCTTCTTCCCGG+AGG 0.710733 5.1:-8505692 MS.gene20260:CDS
TAACCTCAAAATCTCCAACG+AGG 0.783111 5.1:+8505812 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTTACAAATTAAATAAA+TGG + chr5.1:8505279-8505298 None:intergenic 10.0%
!! AAGACAATTATTATCATATA+AGG - chr5.1:8505128-8505147 MS.gene20260:intron 15.0%
!! AGACAATTATTATCATATAA+GGG - chr5.1:8505129-8505148 MS.gene20260:intron 15.0%
!! TTCACTATATCTAATATTTA+TGG - chr5.1:8505754-8505773 MS.gene20260:CDS 15.0%
!! AAAAACTTCCAAATGAAATT+TGG + chr5.1:8504040-8504059 None:intergenic 20.0%
!! AAGTGAAAATGTAAACTATT+AGG - chr5.1:8504359-8504378 MS.gene20260:intron 20.0%
!! ATTGTCTTAAATAATCACTT+GGG - chr5.1:8504697-8504716 MS.gene20260:intron 20.0%
!! GACAATTATTATCATATAAG+GGG - chr5.1:8505130-8505149 MS.gene20260:intron 20.0%
!! TACAAATTAAATAAATGGCT+GGG + chr5.1:8505274-8505293 None:intergenic 20.0%
!! TATATAATAGTATTTCACCT+AGG - chr5.1:8505298-8505317 MS.gene20260:intron 20.0%
!! TTACAAATTAAATAAATGGC+TGG + chr5.1:8505275-8505294 None:intergenic 20.0%
!! TTTATTTGCATGAAATACAA+TGG + chr5.1:8505474-8505493 None:intergenic 20.0%
! AAGAAAATCAATGAAAGAAC+TGG + chr5.1:8504675-8504694 None:intergenic 25.0%
! GATTGTCTTAAATAATCACT+TGG - chr5.1:8504696-8504715 MS.gene20260:intron 25.0%
! GGTCAGTTATAAAAAAATTG+AGG - chr5.1:8504262-8504281 MS.gene20260:intron 25.0%
! TATTCATTGTTTATAGTCAG+AGG + chr5.1:8505183-8505202 None:intergenic 25.0%
! TCCAAATCTAAATTAGAATC+AGG + chr5.1:8505416-8505435 None:intergenic 25.0%
! TCCTGATTCTAATTTAGATT+TGG - chr5.1:8505412-8505431 MS.gene20260:CDS 25.0%
! TCTAGTGATATTAATTGCAA+AGG + chr5.1:8505067-8505086 None:intergenic 25.0%
! TTGCAATTAATATCACTAGA+TGG - chr5.1:8505067-8505086 MS.gene20260:intron 25.0%
!! ATATAATGCATGAGTTGAAT+AGG + chr5.1:8504644-8504663 None:intergenic 25.0%
!! ATTTCATTTGGAAGTTTTTC+AGG - chr5.1:8504041-8504060 MS.gene20260:intron 25.0%
!! GCTTTTGAATCTATTTACAT+TGG - chr5.1:8505566-8505585 MS.gene20260:CDS 25.0%
!!! TTTTAGTGTTTTTGTTGATC+TGG - chr5.1:8504492-8504511 MS.gene20260:intron 25.0%
AAAATCAATGAAAGAACTGG+AGG + chr5.1:8504672-8504691 None:intergenic 30.0%
AAATAGATTCAAAAGCTCTC+AGG + chr5.1:8505562-8505581 None:intergenic 30.0%
AAATCAATGAAAGAACTGGA+GGG + chr5.1:8504671-8504690 None:intergenic 30.0%
AACTAGATTGTACATCATCA+TGG + chr5.1:8505393-8505412 None:intergenic 30.0%
AACTTCCAAATGAAATTTGG+AGG + chr5.1:8504037-8504056 None:intergenic 30.0%
AGACAATATGCAAACAAGAA+CGG + chr5.1:8505645-8505664 None:intergenic 30.0%
AGCTGACATAAAAATTTCAG+AGG - chr5.1:8504778-8504797 MS.gene20260:intron 30.0%
ATGAAATAACGAAGCTGTAT+AGG - chr5.1:8503698-8503717 MS.gene20260:CDS 30.0%
CTAGAACAAAATCATCAAAG+AGG + chr5.1:8504437-8504456 None:intergenic 30.0%
CTGCTTTAATCTTTGTCTAA+TGG - chr5.1:8505614-8505633 MS.gene20260:CDS 30.0%
GACAAGTTGTTAAGATAATC+CGG - chr5.1:8505844-8505863 MS.gene20260:CDS 30.0%
TATTGCCTCCAAATTTCATT+TGG - chr5.1:8504029-8504048 MS.gene20260:intron 30.0%
TGTTTATAGTCAGAGGAAAA+TGG + chr5.1:8505176-8505195 None:intergenic 30.0%
! AAGCTTTTAGATGTATTCTC+AGG - chr5.1:8504932-8504951 MS.gene20260:intron 30.0%
! GATCAATCAATCAAGTTTTG+TGG - chr5.1:8504077-8504096 MS.gene20260:intron 30.0%
! GATTTTATAGTGCATAAGTC+TGG - chr5.1:8504807-8504826 MS.gene20260:intron 30.0%
! TGTCTTTCTTAGCTTTCTTT+AGG + chr5.1:8505114-8505133 None:intergenic 30.0%
! TTTACATTGGATAGTTCTAC+TGG - chr5.1:8505579-8505598 MS.gene20260:CDS 30.0%
! TTTGAAGTACTCTGTCATTT+AGG + chr5.1:8504976-8504995 None:intergenic 30.0%
! TTTTAACCTTTCTTCTTTCC+TGG - chr5.1:8505365-8505384 MS.gene20260:CDS 30.0%
!! AGTTTTGTGGTGATTGTTAA+TGG - chr5.1:8504090-8504109 MS.gene20260:intron 30.0%
!! CAGAAATTTTTCAAATGCCT+AGG + chr5.1:8505318-8505337 None:intergenic 30.0%
!! CTATAAAGCATTTCCCTTTT+GGG - chr5.1:8505231-8505250 MS.gene20260:intron 30.0%
!! TATAAAGCATTTCCCTTTTG+GGG - chr5.1:8505232-8505251 MS.gene20260:intron 30.0%
AAGACATAAATCTGGTCAGA+GGG + chr5.1:8503874-8503893 None:intergenic 35.0%
AATCAATGAAAGAACTGGAG+GGG + chr5.1:8504670-8504689 None:intergenic 35.0%
AATCGAATGAGTACACTTGA+TGG - chr5.1:8504312-8504331 MS.gene20260:intron 35.0%
AATGTTGTAGTAGCTGATGT+TGG - chr5.1:8504390-8504409 MS.gene20260:intron 35.0%
ACTGACCTGAGTTTCTTTAA+CGG + chr5.1:8504249-8504268 None:intergenic 35.0%
ATACACCGTTAAAGAAACTC+AGG - chr5.1:8504241-8504260 MS.gene20260:intron 35.0%
ATCTGACAAACTTTCACTAC+AGG + chr5.1:8505515-8505534 None:intergenic 35.0%
ATGCCATAATATCTTGCAAC+TGG + chr5.1:8505816-8505835 None:intergenic 35.0%
CTAGATGGAACTATTCCATT+AGG - chr5.1:8505082-8505101 MS.gene20260:intron 35.0%
GATCCAGTTGCAAGATATTA+TGG - chr5.1:8505810-8505829 MS.gene20260:CDS 35.0%
TAGATGTATTCTCAGGTTAG+TGG - chr5.1:8504939-8504958 MS.gene20260:intron 35.0%
TATGTCGAAAGAAGAGTTCA+AGG - chr5.1:8503786-8503805 MS.gene20260:CDS 35.0%
TCTTAAAGGATAAAGGGGTT+GGG + chr5.1:8504598-8504617 None:intergenic 35.0%
TGATGGCATTGTAACATTGA+AGG - chr5.1:8504329-8504348 MS.gene20260:intron 35.0%
TTCTTTAGGTGTTCACCTAA+TGG + chr5.1:8505100-8505119 None:intergenic 35.0%
! AAATTGTACTGATGCTGACA+TGG - chr5.1:8505694-8505713 MS.gene20260:CDS 35.0%
! AAGAGTTCAAGGAGAAGTAT+GGG - chr5.1:8503797-8503816 MS.gene20260:intron 35.0%
! ATGCATGAGTTGAATAGGAA+AGG + chr5.1:8504639-8504658 None:intergenic 35.0%
! TATTTGTACTGATGCTGACA+CGG - chr5.1:8505731-8505750 MS.gene20260:CDS 35.0%
! TCTGGAAATTAGAGCGATTT+TGG - chr5.1:8504825-8504844 MS.gene20260:intron 35.0%
! TGCATGAGTTGAATAGGAAA+GGG + chr5.1:8504638-8504657 None:intergenic 35.0%
!! GCTATAAAGCATTTCCCTTT+TGG - chr5.1:8505230-8505249 MS.gene20260:intron 35.0%
!! TTATAGCAGTTTGCTGTGAT+CGG + chr5.1:8505217-8505236 None:intergenic 35.0%
AGAAGACCTTGTCATCAACA+AGG - chr5.1:8503834-8503853 MS.gene20260:intron 40.0%
AGATATTATGGCATGAAGCG+TGG - chr5.1:8505822-8505841 MS.gene20260:CDS 40.0%
AGTAAAGAGAATGCCCCAAA+AGG + chr5.1:8505248-8505267 None:intergenic 40.0%
AGTGGCGTCTTAAAGGATAA+AGG + chr5.1:8504605-8504624 None:intergenic 40.0%
ATCAATGAAAGAACTGGAGG+GGG + chr5.1:8504669-8504688 None:intergenic 40.0%
ATCATAGACTAGTGAGAGTG+AGG + chr5.1:8505018-8505037 None:intergenic 40.0%
ATGGAACCAGGAAAGAAGAA+AGG + chr5.1:8505374-8505393 None:intergenic 40.0%
CCAGATTTATGTCTTCTTCC+CGG - chr5.1:8503879-8503898 MS.gene20260:intron 40.0%
CTTAAAGGATAAAGGGGTTG+GGG + chr5.1:8504597-8504616 None:intergenic 40.0%
GAAGACATAAATCTGGTCAG+AGG + chr5.1:8503875-8503894 None:intergenic 40.0%
GAAGAGTTCAAGGAGAAGTA+TGG - chr5.1:8503796-8503815 MS.gene20260:intron 40.0%
GGCATTGTAACATTGAAGGA+AGG - chr5.1:8504333-8504352 MS.gene20260:intron 40.0%
GTAAAGAGAATGCCCCAAAA+GGG + chr5.1:8505247-8505266 None:intergenic 40.0%
GTCTTAAAGGATAAAGGGGT+TGG + chr5.1:8504599-8504618 None:intergenic 40.0%
GTGGCGTCTTAAAGGATAAA+GGG + chr5.1:8504604-8504623 None:intergenic 40.0%
GTGGTGATTGTTAATGGTTG+AGG - chr5.1:8504096-8504115 MS.gene20260:intron 40.0%
TAACCTCAAAATCTCCAACG+AGG + chr5.1:8503765-8503784 None:intergenic 40.0%
TAACGAAGCTGTATAGGATC+CGG - chr5.1:8503704-8503723 MS.gene20260:CDS 40.0%
TATAGTCAGAGGAAAATGGC+TGG + chr5.1:8505172-8505191 None:intergenic 40.0%
TATGTCAGCTTGATGTTGCA+GGG + chr5.1:8504768-8504787 None:intergenic 40.0%
TGGCGTCTTAAAGGATAAAG+GGG + chr5.1:8504603-8504622 None:intergenic 40.0%
TTAAAGGATAAAGGGGTTGG+GGG + chr5.1:8504596-8504615 None:intergenic 40.0%
TTACTGTTGCAGATTGTCAG+CGG - chr5.1:8504738-8504757 MS.gene20260:intron 40.0%
TTATGTCAGCTTGATGTTGC+AGG + chr5.1:8504769-8504788 None:intergenic 40.0%
TTGTACATCATCATGGAACC+AGG + chr5.1:8505386-8505405 None:intergenic 40.0%
! AGAGTTCAAGGAGAAGTATG+GGG - chr5.1:8503798-8503817 MS.gene20260:intron 40.0%
! TTACCTCGTTGGAGATTTTG+AGG - chr5.1:8503759-8503778 MS.gene20260:CDS 40.0%
!! TTATCCTTTAAGACGCCACT+CGG - chr5.1:8504605-8504624 MS.gene20260:intron 40.0%
!!! GTCAGAGGGATTGTCTTTTT+TGG + chr5.1:8503860-8503879 None:intergenic 40.0%
!!! TTTTGGCCTTGTTGATGACA+AGG + chr5.1:8503843-8503862 None:intergenic 40.0%
AACGGTGTATCTCTCGAGTA+AGG + chr5.1:8504231-8504250 None:intergenic 45.0%
AAGCACGCACACACTAACAA+CGG + chr5.1:8504125-8504144 None:intergenic 45.0%
AGTTGAATAGGAAAGGGCTG+TGG + chr5.1:8504632-8504651 None:intergenic 45.0%
ATTCTCGGAGTTCATGCGTT+TGG + chr5.1:8503944-8503963 None:intergenic 45.0%
CATGACAGGAATTACCTCGT+TGG - chr5.1:8503748-8503767 MS.gene20260:CDS 45.0%
CCGGGAAGAAGACATAAATC+TGG + chr5.1:8503882-8503901 None:intergenic 45.0%
GAACTCCGAGAATGTCTACA+GGG - chr5.1:8503951-8503970 MS.gene20260:intron 45.0%
GATTTATGTCTTCTTCCCGG+AGG - chr5.1:8503882-8503901 MS.gene20260:intron 45.0%
TAAAGGATAAAGGGGTTGGG+GGG + chr5.1:8504595-8504614 None:intergenic 45.0%
TATCTTCCTGCAGTCTCACT+TGG + chr5.1:8505870-8505889 None:intergenic 45.0%
TGAACTCCGAGAATGTCTAC+AGG - chr5.1:8503950-8503969 MS.gene20260:intron 45.0%
TGATGGAGATGCTTCATGAC+AGG - chr5.1:8503734-8503753 MS.gene20260:CDS 45.0%
TGTGCTTGTGCCAAAACATC+AGG - chr5.1:8504181-8504200 MS.gene20260:intron 45.0%
TTCTCAGCTACCTAGAATCC+AGG - chr5.1:8505782-8505801 MS.gene20260:CDS 45.0%
TTGCTTATTCCCCTCGCTAT+CGG - chr5.1:8504559-8504578 MS.gene20260:intron 45.0%
! TCAGTCAGCACCTGATGTTT+TGG + chr5.1:8504194-8504213 None:intergenic 45.0%
! TTTGAGATGACCGATAGCGA+GGG + chr5.1:8504572-8504591 None:intergenic 45.0%
CCAGACCAGACTTACTAACC+AGG - chr5.1:8503987-8504006 MS.gene20260:intron 50.0%
CCAGACTTACTAACCAGGCA+CGG - chr5.1:8503992-8504011 MS.gene20260:intron 50.0%
CCTGGTTAGTAAGTCTGGTC+TGG + chr5.1:8503990-8504009 None:intergenic 50.0%
GATGGCCCTGTAGACATTCT+CGG + chr5.1:8503959-8503978 None:intergenic 50.0%
GCTACCTAGAATCCAGGTGA+CGG - chr5.1:8505788-8505807 MS.gene20260:CDS 50.0%
GCTGTATAGGATCCGGAAGA+CGG - chr5.1:8503711-8503730 MS.gene20260:CDS 50.0%
TCAGGACAAGCGAACGACAA+CGG + chr5.1:8505544-8505563 None:intergenic 50.0%
TCTGGTCTGGCAAACGATGA+TGG + chr5.1:8503977-8503996 None:intergenic 50.0%
TGGTGTAAGTCCTGAAGGTG+TGG + chr5.1:8503924-8503943 None:intergenic 50.0%
TTGAGATGACCGATAGCGAG+GGG + chr5.1:8504571-8504590 None:intergenic 50.0%
! GTTTGAGATGACCGATAGCG+AGG + chr5.1:8504573-8504592 None:intergenic 50.0%
!! GCGTTTGGTGTAAGTCCTGA+AGG + chr5.1:8503929-8503948 None:intergenic 50.0%
ACGCCAACCTTGTCTTCCTC+CGG + chr5.1:8503901-8503920 None:intergenic 55.0%
CAGAGATACTGTTCCGTGCC+TGG + chr5.1:8504008-8504027 None:intergenic 55.0%
CCGTGCCTGGTTAGTAAGTC+TGG + chr5.1:8503995-8504014 None:intergenic 55.0%
CTTCTTCCCGGAGGAAGACA+AGG - chr5.1:8503891-8503910 MS.gene20260:intron 55.0%
GCATCTCCATCACCGTCTTC+CGG + chr5.1:8503726-8503745 None:intergenic 55.0%
GGATCCGTCACCTGGATTCT+AGG + chr5.1:8505795-8505814 None:intergenic 55.0%
GTTAGTGTGTGCGTGCTTGC+AGG - chr5.1:8504127-8504146 MS.gene20260:intron 55.0%
TAGGATCCGGAAGACGGTGA+TGG - chr5.1:8503717-8503736 MS.gene20260:CDS 55.0%
TGGACCGAGTGGCGTCTTAA+AGG + chr5.1:8504612-8504631 None:intergenic 55.0%
TTCCCGGAGGAAGACAAGGT+TGG - chr5.1:8503895-8503914 MS.gene20260:intron 55.0%
TTCCTGCAGTCTCACTTGGC+CGG + chr5.1:8505866-8505885 None:intergenic 55.0%
TTGCAACTGGATCCGTCACC+TGG + chr5.1:8505803-8505822 None:intergenic 55.0%
AGGTTGGCGTCCACACCTTC+AGG - chr5.1:8503911-8503930 MS.gene20260:intron 60.0%
AGTGTGTGCGTGCTTGCAGG+AGG - chr5.1:8504130-8504149 MS.gene20260:intron 60.0%
ATCCGGCCAAGTGAGACTGC+AGG - chr5.1:8505861-8505880 MS.gene20260:CDS 60.0%
CGCCAACCTTGTCTTCCTCC+GGG + chr5.1:8503900-8503919 None:intergenic 60.0%
GGAAAGGGCTGTGGACCGAG+TGG + chr5.1:8504623-8504642 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 8503682 8505914 8503682 ID=MS.gene20260
chr5.1 mRNA 8503682 8505914 8503682 ID=MS.gene20260.t1;Parent=MS.gene20260
chr5.1 exon 8505534 8505914 8505534 ID=MS.gene20260.t1.exon1;Parent=MS.gene20260.t1
chr5.1 CDS 8505534 8505914 8505534 ID=cds.MS.gene20260.t1;Parent=MS.gene20260.t1
chr5.1 exon 8505334 8505447 8505334 ID=MS.gene20260.t1.exon2;Parent=MS.gene20260.t1
chr5.1 CDS 8505334 8505447 8505334 ID=cds.MS.gene20260.t1;Parent=MS.gene20260.t1
chr5.1 exon 8503682 8503807 8503682 ID=MS.gene20260.t1.exon3;Parent=MS.gene20260.t1
chr5.1 CDS 8503682 8503807 8503682 ID=cds.MS.gene20260.t1;Parent=MS.gene20260.t1
Gene Sequence

>MS.gene20260

ATGGTGTTTTCGGAGGATGAAATAACGAAGCTGTATAGGATCCGGAAGACGGTGATGGAGATGCTTCATGACAGGAATTACCTCGTTGGAGATTTTGAGGTTAATATGTCGAAAGAAGAGTTCAAGGAGAAGTATGGGGAGAACATGAAGAGAGAAGACCTTGTCATCAACAAGGCCAAAAAAGACAATCCCTCTGACCAGATTTATGTCTTCTTCCCGGAGGAAGACAAGGTTGGCGTCCACACCTTCAGGACTTACACCAAACGCATGAACTCCGAGAATGTCTACAGGGCCATCATCGTTTGCCAGACCAGACTTACTAACCAGGCACGGAACAGTATCTCTGATATTGCCTCCAAATTTCATTTGGAAGTTTTTCAGGTAATTCATCAATCGATCAATCAATCAAGTTTTGTGGTGATTGTTAATGGTTGAGGTAACCGTTGTTAGTGTGTGCGTGCTTGCAGGAGGCTGAATTGCTCGTTAATGTAAGATATCATGTGCTTGTGCCAAAACATCAGGTGCTGACTGACAATGAGAAGAAAACCTTACTCGAGAGATACACCGTTAAAGAAACTCAGGTCAGTTATAAAAAAATTGAGGAAATTTTGTGTTATTTAGAATGTGAGTAATCGAATGAGTACACTTGATGGCATTGTAACATTGAAGGAAGGACAAAGTGAAAATGTAAACTATTAGGACTTTGTTAATGTTGTAGTAGCTGATGTTGGATTGTTATTCGTATTTTAGTTCCTCTTTGATGATTTTGTTCTAGCTTATAACATTATGTTAAATTGTTTATTTTCTTTCTTTTAGTGTTTTTGTTGATCTGGAAAATAGTGAATTAACTTCAGAATGAAGTGAGCATGAAAGAGTTTTGCTTATTCCCCTCGCTATCGGTCATCTCAAACCCCCCAACCCCTTTATCCTTTAAGACGCCACTCGGTCCACAGCCCTTTCCTATTCAACTCATGCATTATATCTCCCCCTCCAGTTCTTTCATTGATTTTCTTTGATTGTCTTAAATAATCACTTGGGTGAGTATTTAGATAGAGCTTACTGTTGCAGATTGTCAGCGGCGTACCCTGCAACATCAAGCTGACATAAAAATTTCAGAGGAAATCAGATTTTATAGTGCATAAGTCTGGAAATTAGAGCGATTTTGGTAGTACACACTAAGATTGTTGAGTGATTTAAAGCTGAATATCGTGTATAATACTATTAATTATAGAAAATTAAGTGATCTGTCTAAGCTTTTAGATGTATTCTCAGGTTAGTGGATACTGACTTTCCTAAATGACAGAGTACTTCAAATATAACTTCATCATTTGTACCTCACTCTCACTAGTCTATGATTTCGTAAAAATTAAAATATATGATGTCCTTTGCAATTAATATCACTAGATGGAACTATTCCATTAGGTGAACACCTAAAGAAAGCTAAGAAAGACAATTATTATCATATAAGGGGAAACAACATACTTATTCCAGCCATTTTCCTCTGACTATAAACAATGAATAGCTACAATCAGCCGATCACAGCAAACTGCTATAAAGCATTTCCCTTTTGGGGCATTCTCTTTACTTATCCCAGCCATTTATTTAATTTGTAAAGTTATATAATAGTATTTCACCTAGGCATTTGAAAAATTTCTGCACACTCACACGTGCTTCATCTCTGAATTTTAACCTTTCTTCTTTCCTGGTTCCATGATGATGTACAATCTAGTTCCTGATTCTAATTTAGATTTGGATGTAATTAAGAATGCATGAAAAGCAAAATTAGCATCCATTGTATTTCATGCAAATAAAACTTCTTCATTGTTTATTCCTGTAGTGAAAGTTTGTCAGATTTGTCACCGTTGTCGTTCGCTTGTCCTGAGAGCTTTTGAATCTATTTACATTGGATAGTTCTACTGGTTTTAGTGTTTACTGCTTTAATCTTTGTCTAATGGATGTACCGTTCTTGTTTGCATATTGTCTTGTATGTGCAATTGTATCATTCTACTACAAAATTGTACTGATGCTGACATGGTTCACTATATCTAATATTTGTACTGATGCTGACACGGTTCACTATATCTAATATTTATGGTCTGTTTCTCAGCTACCTAGAATCCAGGTGACGGATCCAGTTGCAAGATATTATGGCATGAAGCGTGGACAAGTTGTTAAGATAATCCGGCCAAGTGAGACTGCAGGAAGATATGTTACATACCGATTTGTTGTATAA
Protein sequence

>MS.gene20260.t1

MVFSEDEITKLYRIRKTVMEMLHDRNYLVGDFEVNMSKEEFKEKYGENMKREDLVINKAKKDNPSDQIYVFFPEEDKVGVHTFRTYTKRMNSENVYRAIIVCQTRLTNQARNSISDIASKFHLEVFQEAELLVNVRYHVLVPKHQVLTDNEKKTLLERYTVKETQLPRIQVTDPVARYYGMKRGQVVKIIRPSETAGRYVTYRFVV