Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92338.t1 | XP_003610652.2 | 100 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 8.90E-109 | 402.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92338.t1 | O81098 | 76.6 | 205 | 48 | 0 | 2 | 206 | 1 | 205 | 3.5e-85 | 315.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92338.t1 | G7K102 | 100.0 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 6.4e-109 | 402.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene92338 | 0.811171 | 8.00E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene92338 | 0.830168 | 3.42E-55 | -1.69E-46 |
| MS.gene050288 | MS.gene92338 | 0.817239 | 3.66E-52 | -1.69E-46 |
| MS.gene050303 | MS.gene92338 | 0.823142 | 1.62E-53 | -1.69E-46 |
| MS.gene050320 | MS.gene92338 | 0.811588 | 6.49E-51 | -1.69E-46 |
| MS.gene050824 | MS.gene92338 | 0.801598 | 8.35E-49 | -1.69E-46 |
| MS.gene051063 | MS.gene92338 | 0.828142 | 1.06E-54 | -1.69E-46 |
| MS.gene051245 | MS.gene92338 | 0.836874 | 7.24E-57 | -1.69E-46 |
| MS.gene051746 | MS.gene92338 | 0.830428 | 2.95E-55 | -1.69E-46 |
| MS.gene051748 | MS.gene92338 | 0.840358 | 9.12E-58 | -1.69E-46 |
| MS.gene051756 | MS.gene92338 | 0.808055 | 3.74E-50 | -1.69E-46 |
| MS.gene051757 | MS.gene92338 | 0.802671 | 5.02E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene92338 | 0.844059 | 9.56E-59 | -1.69E-46 |
| MS.gene052176 | MS.gene92338 | 0.827481 | 1.53E-54 | -1.69E-46 |
| MS.gene052286 | MS.gene92338 | 0.823551 | 1.30E-53 | -1.69E-46 |
| MS.gene052302 | MS.gene92338 | 0.844245 | 8.52E-59 | -1.69E-46 |
| MS.gene052309 | MS.gene92338 | -0.818218 | 2.20E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene92338 | 0.842144 | 3.09E-58 | -1.69E-46 |
| MS.gene052947 | MS.gene92338 | 0.815141 | 1.08E-51 | -1.69E-46 |
| MS.gene053109 | MS.gene92338 | 0.8167 | 4.83E-52 | -1.69E-46 |
| MS.gene053216 | MS.gene92338 | 0.808345 | 3.24E-50 | -1.69E-46 |
| MS.gene055441 | MS.gene92338 | 0.825088 | 5.67E-54 | -1.69E-46 |
| MS.gene056631 | MS.gene92338 | 0.834235 | 3.37E-56 | -1.69E-46 |
| MS.gene056986 | MS.gene92338 | 0.804398 | 2.20E-49 | -1.69E-46 |
| MS.gene057079 | MS.gene92338 | 0.830633 | 2.63E-55 | -1.69E-46 |
| MS.gene057234 | MS.gene92338 | 0.810319 | 1.22E-50 | -1.69E-46 |
| MS.gene05795 | MS.gene92338 | 0.829485 | 5.01E-55 | -1.69E-46 |
| MS.gene057999 | MS.gene92338 | 0.817185 | 3.76E-52 | -1.69E-46 |
| MS.gene058182 | MS.gene92338 | 0.825924 | 3.59E-54 | -1.69E-46 |
| MS.gene058238 | MS.gene92338 | 0.856562 | 2.96E-62 | -1.69E-46 |
| MS.gene058906 | MS.gene92338 | 0.827053 | 1.93E-54 | -1.69E-46 |
| MS.gene059830 | MS.gene92338 | 0.802777 | 4.78E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene92338 | 0.815206 | 1.04E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene92338 | 0.839305 | 1.72E-57 | -1.69E-46 |
| MS.gene06011 | MS.gene92338 | 0.806452 | 8.17E-50 | -1.69E-46 |
| MS.gene060297 | MS.gene92338 | 0.848185 | 7.20E-60 | -1.69E-46 |
| MS.gene060586 | MS.gene92338 | 0.827384 | 1.61E-54 | -1.69E-46 |
| MS.gene060879 | MS.gene92338 | 0.810537 | 1.10E-50 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92338.t1 | MTR_5g005470 | 100.000 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 1.08e-153 | 424 |
| MS.gene92338.t1 | MTR_5g016220 | 80.488 | 205 | 40 | 0 | 2 | 206 | 127 | 331 | 6.89e-122 | 348 |
| MS.gene92338.t1 | MTR_5g016220 | 74.803 | 127 | 31 | 1 | 1 | 127 | 1 | 126 | 5.28e-62 | 196 |
| MS.gene92338.t1 | MTR_5g016200 | 81.188 | 202 | 35 | 1 | 1 | 202 | 1 | 199 | 6.08e-119 | 336 |
| MS.gene92338.t1 | MTR_6g088010 | 60.870 | 207 | 79 | 1 | 1 | 205 | 1 | 207 | 9.21e-88 | 257 |
| MS.gene92338.t1 | MTR_6g042230 | 62.621 | 206 | 76 | 1 | 1 | 206 | 1 | 205 | 3.94e-87 | 256 |
| MS.gene92338.t1 | MTR_6g088020 | 61.058 | 208 | 77 | 2 | 1 | 205 | 1 | 207 | 1.36e-84 | 249 |
| MS.gene92338.t1 | MTR_7g090220 | 40.000 | 200 | 117 | 2 | 7 | 205 | 50 | 247 | 2.55e-42 | 143 |
| MS.gene92338.t1 | MTR_3g058520 | 30.366 | 191 | 78 | 6 | 4 | 194 | 23 | 158 | 2.06e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92338.t1 | AT3G22320 | 76.585 | 205 | 48 | 0 | 2 | 206 | 1 | 205 | 2.54e-118 | 335 |
| MS.gene92338.t1 | AT5G57980 | 47.087 | 206 | 105 | 2 | 5 | 206 | 5 | 210 | 2.18e-61 | 191 |
| MS.gene92338.t1 | AT2G41340 | 39.901 | 203 | 119 | 3 | 4 | 205 | 17 | 217 | 3.15e-42 | 142 |
| MS.gene92338.t1 | AT3G57080 | 38.725 | 204 | 122 | 3 | 3 | 205 | 20 | 221 | 2.36e-41 | 140 |
| MS.gene92338.t1 | AT3G54490 | 35.323 | 201 | 127 | 2 | 7 | 206 | 35 | 233 | 2.39e-33 | 119 |
| MS.gene92338.t1 | AT2G41340 | 35.196 | 179 | 104 | 4 | 4 | 181 | 17 | 184 | 2.29e-26 | 100 |
| MS.gene92338.t1 | AT2G41340 | 37.423 | 163 | 99 | 3 | 4 | 165 | 17 | 177 | 5.24e-26 | 99.4 |
| MS.gene92338.t1 | AT3G16680 | 49.367 | 79 | 36 | 2 | 83 | 158 | 1 | 78 | 1.71e-18 | 77.0 |
Find 33 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATACCGATTTGTTGTATA+AGG | 0.225416 | 5.1:+529025 | MS.gene92338:CDS |
| GATCCTGTTGCAAGATATTA+TGG | 0.297526 | 5.1:+528941 | MS.gene92338:CDS |
| AATTTCAGAAACACAAGTTT+TGG | 0.351766 | 5.1:-525577 | None:intergenic |
| TAACAACTTGTCCACGCTTC+AGG | 0.355396 | 5.1:-528964 | None:intergenic |
| TTTGTCTTTGAAATCGTGTT+TGG | 0.360361 | 5.1:-525358 | None:intergenic |
| AATTGCTTCCAAATTTCATT+TGG | 0.361732 | 5.1:+525596 | MS.gene92338:CDS |
| GGATCCGTTACCTGGATTCT+AGG | 0.372756 | 5.1:-528923 | None:intergenic |
| ACACCGACTTTGGCTTCTTC+AGG | 0.396133 | 5.1:-525465 | None:intergenic |
| TTGCAACAGGATCCGTTACC+TGG | 0.403456 | 5.1:-528931 | None:intergenic |
| TGTGCAGGAGGCGGAGTTGC+TGG | 0.426628 | 5.1:+525833 | MS.gene92338:intron |
| GACAGTGTATCTCTCAAGTA+AGG | 0.434087 | 5.1:-525919 | None:intergenic |
| AGGCCATAATATCTTGCAAC+AGG | 0.438401 | 5.1:-528944 | None:intergenic |
| CAATGAAGACTTACACCAAC+AGG | 0.446390 | 5.1:+525493 | MS.gene92338:CDS |
| TCGTTGAGAATCTGATGTTC+CGG | 0.447338 | 5.1:-525882 | None:intergenic |
| GACAAGTTGTTAAGATAATC+CGG | 0.451366 | 5.1:+528975 | MS.gene92338:CDS |
| AATCACCGACGAGGTAGTTT+CGG | 0.453235 | 5.1:-525320 | None:intergenic |
| TTCCTGCAGTCTCACTTGGC+CGG | 0.488931 | 5.1:-528994 | None:intergenic |
| GAAATCCTTATACAACAAAT+CGG | 0.490397 | 5.1:-529030 | None:intergenic |
| TTTGGCAAAGGGAGTAAGAC+TGG | 0.523494 | 5.1:-525559 | None:intergenic |
| TATCTTCCTGCAGTCTCACT+TGG | 0.525204 | 5.1:-528998 | None:intergenic |
| CACGATTTCAAAGACAAATA+CGG | 0.530990 | 5.1:+525363 | MS.gene92338:CDS |
| ATTCTCAGAATTCATCCTGT+TGG | 0.552863 | 5.1:-525508 | None:intergenic |
| TTCTCAGCTACCTAGAATCC+AGG | 0.556727 | 5.1:+528913 | MS.gene92338:intron |
| AAAAGAGCATGTGCTTGTGC+CGG | 0.568897 | 5.1:+525863 | MS.gene92338:CDS |
| AGATATTATGGCCTGAAGCG+TGG | 0.578373 | 5.1:+528953 | MS.gene92338:CDS |
| ATCCGGCCAAGTGAGACTGC+AGG | 0.593487 | 5.1:+528992 | MS.gene92338:CDS |
| AAGACATAGATCTGATCAGA+AGG | 0.597739 | 5.1:-525438 | None:intergenic |
| ATACACTGTCAAGGAAACTC+AGG | 0.607183 | 5.1:+525932 | MS.gene92338:CDS |
| TTTCCTGAAGAAGCCAAAGT+CGG | 0.608753 | 5.1:+525462 | MS.gene92338:CDS |
| ACTTGAGAGATACACTGTCA+AGG | 0.648812 | 5.1:+525923 | MS.gene92338:CDS |
| GCTACCTAGAATCCAGGTAA+CGG | 0.648864 | 5.1:+528919 | MS.gene92338:intron |
| AAAGACCGAAACTACCTCGT+CGG | 0.681273 | 5.1:+525315 | MS.gene92338:CDS |
| TGAGTTCGAAATCACCGACG+AGG | 0.765537 | 5.1:-525329 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTATATCTAATATTTAT+GGG | + | chr5.1:528886-528905 | MS.gene92338:intron | 10.0% |
| !! | TTCATTATATCTAATATTTA+TGG | + | chr5.1:528885-528904 | MS.gene92338:intron | 10.0% |
| !! | AAAAAAAAACATAGAAACAT+GGG | - | chr5.1:528295-528314 | None:intergenic | 15.0% |
| !! | AATGATTACATAAATGAAAT+AGG | + | chr5.1:527753-527772 | MS.gene92338:intron | 15.0% |
| !!! | GATTTTCAAAGTAATATTAT+AGG | + | chr5.1:528055-528074 | MS.gene92338:intron | 15.0% |
| !! | AAAAACTTCCAAATGAAATT+TGG | - | chr5.1:525607-525626 | None:intergenic | 20.0% |
| !! | AAAATGTAAGTGATTTATCT+AGG | + | chr5.1:526923-526942 | MS.gene92338:intron | 20.0% |
| !! | AATTCTTAAATAGTCTCATT+TGG | + | chr5.1:526636-526655 | MS.gene92338:intron | 20.0% |
| !! | ACATTCAATCAATTCAATAA+GGG | - | chr5.1:526271-526290 | None:intergenic | 20.0% |
| !! | ATAAGTTGTTTATCAAAATC+GGG | - | chr5.1:526009-526028 | None:intergenic | 20.0% |
| !! | ATTCTTAAATAGTCTCATTT+GGG | + | chr5.1:526637-526656 | MS.gene92338:intron | 20.0% |
| !! | GAAAAAAAAACATAGAAACA+TGG | - | chr5.1:528296-528315 | None:intergenic | 20.0% |
| !! | GATAAGTTGTTTATCAAAAT+CGG | - | chr5.1:526010-526029 | None:intergenic | 20.0% |
| !! | GATATTATAGTATTTCAGTT+AGG | + | chr5.1:528441-528460 | MS.gene92338:intron | 20.0% |
| !! | TGAGAAAAATTTGATAAAGA+CGG | - | chr5.1:528162-528181 | None:intergenic | 20.0% |
| !! | TTAAGAATTAAGATGATCAA+AGG | - | chr5.1:526625-526644 | None:intergenic | 20.0% |
| !! | TTGAAATATTAATAGAGTCA+GGG | + | chr5.1:528367-528386 | MS.gene92338:intron | 20.0% |
| !!! | ATAAATCACTTACATTTTCT+AGG | - | chr5.1:526921-526940 | None:intergenic | 20.0% |
| !!! | GATTTTGAATCTTTTTAGAT+TGG | + | chr5.1:528705-528724 | MS.gene92338:intron | 20.0% |
| !!! | GTTTTTTGTGTTTTTAGTAT+GGG | + | chr5.1:525976-525995 | MS.gene92338:intron | 20.0% |
| !!! | TATTAACCGACATAATTTTT+GGG | - | chr5.1:526222-526241 | None:intergenic | 20.0% |
| !!! | TCATTTTCTCAAATTATCAT+CGG | - | chr5.1:525724-525743 | None:intergenic | 20.0% |
| !!! | TGAATCTTTTAACTTAGATT+TGG | + | chr5.1:526733-526752 | MS.gene92338:intron | 20.0% |
| !!! | TGTTTTTTGTGTTTTTAGTA+TGG | + | chr5.1:525975-525994 | MS.gene92338:intron | 20.0% |
| !!! | TTATTAACCGACATAATTTT+TGG | - | chr5.1:526223-526242 | None:intergenic | 20.0% |
| !!! | TTTGAAATATTAATAGAGTC+AGG | + | chr5.1:528366-528385 | MS.gene92338:intron | 20.0% |
| !!! | TTTTGAAATATTAACAGAGT+CGG | - | chr5.1:528133-528152 | None:intergenic | 20.0% |
| !!! | TTTTGCTCATGATTTTTTTT+AGG | - | chr5.1:528033-528052 | None:intergenic | 20.0% |
| ! | AAGATAATTAAGATGATCAG+CGG | - | chr5.1:526575-526594 | None:intergenic | 25.0% |
| ! | AAGTGAAAATGTAAGCTATT+AGG | + | chr5.1:526324-526343 | MS.gene92338:intron | 25.0% |
| ! | AATTGCTTCCAAATTTCATT+TGG | + | chr5.1:525596-525615 | MS.gene92338:CDS | 25.0% |
| ! | ACAAAATGCTATCATCAAAA+AGG | - | chr5.1:526414-526433 | None:intergenic | 25.0% |
| ! | AGAAAAATTTGATAAAGACG+GGG | - | chr5.1:528160-528179 | None:intergenic | 25.0% |
| ! | AGTGAAAATGTAAGCTATTA+GGG | + | chr5.1:526325-526344 | MS.gene92338:intron | 25.0% |
| ! | ATAAACCGCATAAACAAATT+AGG | - | chr5.1:525659-525678 | None:intergenic | 25.0% |
| ! | CACATTCAATCAATTCAATA+AGG | - | chr5.1:526272-526291 | None:intergenic | 25.0% |
| ! | CCAAAATTACTTCAATTTCT+AGG | - | chr5.1:526844-526863 | None:intergenic | 25.0% |
| ! | GAGAAAAATTTGATAAAGAC+GGG | - | chr5.1:528161-528180 | None:intergenic | 25.0% |
| ! | GTATTACTATTTACTGAAAG+TGG | + | chr5.1:526863-526882 | MS.gene92338:intron | 25.0% |
| ! | GTTATTTATACCTGACATAT+TGG | + | chr5.1:525692-525711 | MS.gene92338:intron | 25.0% |
| ! | TAAACCGCATAAACAAATTA+GGG | - | chr5.1:525658-525677 | None:intergenic | 25.0% |
| ! | TCTATTTGCGTTAAATACAA+TGG | - | chr5.1:528616-528635 | None:intergenic | 25.0% |
| ! | TGAGAAACTTTAGATAAAGA+CGG | + | chr5.1:528336-528355 | MS.gene92338:intron | 25.0% |
| ! | TTACTATAACACATCTGTAT+TGG | - | chr5.1:527680-527699 | None:intergenic | 25.0% |
| ! | TTCAACAATTACAGTGAAAA+TGG | + | chr5.1:527990-528009 | MS.gene92338:intron | 25.0% |
| ! | TTTGTCATAAAATTGTCGTT+GGG | + | chr5.1:528683-528702 | MS.gene92338:intron | 25.0% |
| !! | AATTTCAGAAACACAAGTTT+TGG | - | chr5.1:525580-525599 | None:intergenic | 25.0% |
| !! | ATTTCATTTGGAAGTTTTTC+AGG | + | chr5.1:525608-525627 | MS.gene92338:CDS | 25.0% |
| !! | CATTGTTTATTTCTTAGTGT+TGG | + | chr5.1:528643-528662 | MS.gene92338:intron | 25.0% |
| !! | CCTAGAAATTGAAGTAATTT+TGG | + | chr5.1:526841-526860 | MS.gene92338:intron | 25.0% |
| !! | TTTGAAATATTAACAGAGTC+GGG | - | chr5.1:528132-528151 | None:intergenic | 25.0% |
| !! | TTTTGTCATAAAATTGTCGT+TGG | + | chr5.1:528682-528701 | MS.gene92338:intron | 25.0% |
| !!! | ATCAGAAGGTTTATCTTTTT+TGG | - | chr5.1:525427-525446 | None:intergenic | 25.0% |
| !!! | TAAACCCTAATTTGTTTATG+CGG | + | chr5.1:525651-525670 | MS.gene92338:intron | 25.0% |
| !!! | TTTTACTGCTTTTGTTGATT+TGG | + | chr5.1:526454-526473 | MS.gene92338:intron | 25.0% |
| AACACATCTGTATTGGAAAA+GGG | - | chr5.1:527559-527578 | None:intergenic | 30.0% | |
| AAGAGGAAATCAGATGATAT+AGG | + | chr5.1:526815-526834 | MS.gene92338:intron | 30.0% | |
| AATTGATTGAATGTGTGTGA+TGG | + | chr5.1:526277-526296 | MS.gene92338:intron | 30.0% | |
| ACTAAGAAATGCTTCTAAAC+AGG | - | chr5.1:527385-527404 | None:intergenic | 30.0% | |
| AGAAACTTTAGATAAAGACG+GGG | + | chr5.1:528338-528357 | MS.gene92338:intron | 30.0% | |
| CAAATCTTCCTTGACTTAAT+TGG | - | chr5.1:526699-526718 | None:intergenic | 30.0% | |
| CAACAAAAGCAGTAAAAGAA+AGG | - | chr5.1:526451-526470 | None:intergenic | 30.0% | |
| CACGATTTCAAAGACAAATA+CGG | + | chr5.1:525363-525382 | MS.gene92338:CDS | 30.0% | |
| CATTAGACAAAGAATGATCA+AGG | - | chr5.1:528777-528796 | None:intergenic | 30.0% | |
| CTTGATCATTCTTTGTCTAA+TGG | + | chr5.1:528775-528794 | MS.gene92338:intron | 30.0% | |
| GAAAATCACTTACAAAGACA+GGG | - | chr5.1:528100-528119 | None:intergenic | 30.0% | |
| GACAAGTTGTTAAGATAATC+CGG | + | chr5.1:528975-528994 | MS.gene92338:CDS | 30.0% | |
| GAGAAACTTTAGATAAAGAC+GGG | + | chr5.1:528337-528356 | MS.gene92338:intron | 30.0% | |
| GCATTTGAAGATTAATTCTC+AGG | + | chr5.1:526945-526964 | MS.gene92338:intron | 30.0% | |
| TAACACATCTGTATTGGAAA+AGG | - | chr5.1:527560-527579 | None:intergenic | 30.0% | |
| TAACTAGGAAAGAAAGATGA+AGG | - | chr5.1:528510-528529 | None:intergenic | 30.0% | |
| TACTTTATCATCGTGTAACT+AGG | - | chr5.1:528525-528544 | None:intergenic | 30.0% | |
| TAGTCTCCCAAAAATTATGT+CGG | + | chr5.1:526213-526232 | MS.gene92338:intron | 30.0% | |
| TCACTATAACACATCTGTAT+TGG | - | chr5.1:527566-527585 | None:intergenic | 30.0% | |
| TGAAAATCACTTACAAAGAC+AGG | - | chr5.1:528101-528120 | None:intergenic | 30.0% | |
| TGTGTTATAGTGAGTTAACT+TGG | + | chr5.1:527573-527592 | MS.gene92338:intron | 30.0% | |
| TTAAATAGTCTCATTTGGGT+TGG | + | chr5.1:526641-526660 | MS.gene92338:intron | 30.0% | |
| TTACTGTTACTCGTTGTATT+TGG | - | chr5.1:527210-527229 | None:intergenic | 30.0% | |
| TTGAAATATTAACAGAGTCG+GGG | - | chr5.1:528131-528150 | None:intergenic | 30.0% | |
| ! | AATTACAGTGAAAATGGACT+TGG | + | chr5.1:527996-528015 | MS.gene92338:intron | 30.0% |
| ! | GTGTTGCATATTCTTACTTT+TGG | - | chr5.1:527443-527462 | None:intergenic | 30.0% |
| ! | TAGAATCTAGTTTGTGATTC+TGG | + | chr5.1:528543-528562 | MS.gene92338:intron | 30.0% |
| !! | GATTCTGGTTTAGATTTCAA+TGG | + | chr5.1:528558-528577 | MS.gene92338:intron | 30.0% |
| !! | TTTGTCTTTGAAATCGTGTT+TGG | - | chr5.1:525361-525380 | None:intergenic | 30.0% |
| !!! | GAGCTATTTTTGTAAGTTCT+TGG | + | chr5.1:526187-526206 | MS.gene92338:intron | 30.0% |
| !!! | GTGTTTTTAGTATGGGATTA+AGG | + | chr5.1:525983-526002 | MS.gene92338:intron | 30.0% |
| !!! | TATTAGGGTTTTGTTTGTTG+TGG | + | chr5.1:526340-526359 | MS.gene92338:intron | 30.0% |
| !!! | TTTTTTTTTCCACATGACGA+GGG | + | chr5.1:528306-528325 | MS.gene92338:intron | 30.0% |
| AAGACATAGATCTGATCAGA+AGG | - | chr5.1:525441-525460 | None:intergenic | 35.0% | |
| ACTATTTACTGAAAGTGGTG+AGG | + | chr5.1:526868-526887 | MS.gene92338:intron | 35.0% | |
| ATAGGAGTAAACCACCAATT+TGG | + | chr5.1:528073-528092 | MS.gene92338:intron | 35.0% | |
| ATTCTCAGAATTCATCCTGT+TGG | - | chr5.1:525511-525530 | None:intergenic | 35.0% | |
| CAATTCAATAAGGGTCTGTT+TGG | - | chr5.1:526262-526281 | None:intergenic | 35.0% | |
| CACAAGCTGTTATCATGATA+AGG | + | chr5.1:526042-526061 | MS.gene92338:intron | 35.0% | |
| CCTTTGTAATTAAAGCCACT+AGG | + | chr5.1:527082-527101 | MS.gene92338:intron | 35.0% | |
| CTATTTACTGAAAGTGGTGA+GGG | + | chr5.1:526869-526888 | MS.gene92338:intron | 35.0% | |
| GAAGAAGTAGTAGATGATGT+TGG | + | chr5.1:526370-526389 | MS.gene92338:intron | 35.0% | |
| GAGAATCACTTACAAAGACA+GGG | + | chr5.1:528398-528417 | MS.gene92338:intron | 35.0% | |
| GATCCTGTTGCAAGATATTA+TGG | + | chr5.1:528941-528960 | MS.gene92338:CDS | 35.0% | |
| GCGGTTTATAAGAGTTAGTT+AGG | + | chr5.1:525670-525689 | MS.gene92338:intron | 35.0% | |
| TACTCGTTGTATTTGGTTAG+AGG | - | chr5.1:527203-527222 | None:intergenic | 35.0% | |
| TAGACTGAGAGAAGAGAAAA+TGG | - | chr5.1:527361-527380 | None:intergenic | 35.0% | |
| TATCGAGTAAACCACCAATT+TGG | - | chr5.1:528425-528444 | None:intergenic | 35.0% | |
| TCAACTGAAGAGATGCAATT+AGG | + | chr5.1:527324-527343 | MS.gene92338:intron | 35.0% | |
| TGAGAATCACTTACAAAGAC+AGG | + | chr5.1:528397-528416 | MS.gene92338:intron | 35.0% | |
| TGATATAGCACATCGCAAAA+GGG | - | chr5.1:527259-527278 | None:intergenic | 35.0% | |
| TGTATTTGGTTAGAGGCAAA+TGG | - | chr5.1:527196-527215 | None:intergenic | 35.0% | |
| TTGATATAGCACATCGCAAA+AGG | - | chr5.1:527260-527279 | None:intergenic | 35.0% | |
| TTGTAATTAAAGCCACTAGG+TGG | + | chr5.1:527085-527104 | MS.gene92338:intron | 35.0% | |
| ! | AAGGCGGTTTTTATCACATA+AGG | + | chr5.1:527146-527165 | MS.gene92338:intron | 35.0% |
| ! | ACCTTTGAAAGAATTAGCAG+TGG | - | chr5.1:526600-526619 | None:intergenic | 35.0% |
| ! | AGGCGGTTTTTATCACATAA+GGG | + | chr5.1:527147-527166 | MS.gene92338:intron | 35.0% |
| ! | CCTTTGAAAGAATTAGCAGT+GGG | - | chr5.1:526599-526618 | None:intergenic | 35.0% |
| ! | CTCAAGTAAGGTTTTCTTCT+CGG | - | chr5.1:525910-525929 | None:intergenic | 35.0% |
| ! | CTTTGAAAGAATTAGCAGTG+GGG | - | chr5.1:526598-526617 | None:intergenic | 35.0% |
| ! | TGATGGATGTGTAATGTCAA+AGG | + | chr5.1:526294-526313 | MS.gene92338:intron | 35.0% |
| ! | TGGCAAATGTCAAGTTCTTT+TGG | + | chr5.1:528725-528744 | MS.gene92338:intron | 35.0% |
| !! | ACATGTGTCTGAAAAGTATC+TGG | + | chr5.1:527950-527969 | MS.gene92338:intron | 35.0% |
| !! | AGAAACACAAGTTTTGGCAA+AGG | - | chr5.1:525574-525593 | None:intergenic | 35.0% |
| !! | CCTAGTGGCTTTAATTACAA+AGG | - | chr5.1:527085-527104 | None:intergenic | 35.0% |
| !! | GAAACACAAGTTTTGGCAAA+GGG | - | chr5.1:525573-525592 | None:intergenic | 35.0% |
| !! | TGGAAAAGGGTACTAATTGT+CGG | - | chr5.1:527546-527565 | None:intergenic | 35.0% |
| !!! | GTTTTTTTTTCCACATGACG+AGG | + | chr5.1:528305-528324 | MS.gene92338:intron | 35.0% |
| ACTTGAGAGATACACTGTCA+AGG | + | chr5.1:525923-525942 | MS.gene92338:CDS | 40.0% | |
| AGGCCATAATATCTTGCAAC+AGG | - | chr5.1:528947-528966 | None:intergenic | 40.0% | |
| AGTACTGCGCTTAGAATTTG+TGG | + | chr5.1:526776-526795 | MS.gene92338:intron | 40.0% | |
| ATACACTGTCAAGGAAACTC+AGG | + | chr5.1:525932-525951 | MS.gene92338:CDS | 40.0% | |
| ATTGCATCTCTTCAGTTGAG+TGG | - | chr5.1:527323-527342 | None:intergenic | 40.0% | |
| CAATGAAGACTTACACCAAC+AGG | + | chr5.1:525493-525512 | MS.gene92338:CDS | 40.0% | |
| CCCACTGCTAATTCTTTCAA+AGG | + | chr5.1:526596-526615 | MS.gene92338:intron | 40.0% | |
| CTTCCTTGACTTAATTGGCA+AGG | - | chr5.1:526694-526713 | None:intergenic | 40.0% | |
| CTTCCTTGCCAATTAAGTCA+AGG | + | chr5.1:526688-526707 | MS.gene92338:intron | 40.0% | |
| GAATACTATGAGTCTTCAGC+TGG | - | chr5.1:527500-527519 | None:intergenic | 40.0% | |
| GACACATGTTGTACGAATGA+CGG | - | chr5.1:527939-527958 | None:intergenic | 40.0% | |
| GACAGTGTATCTCTCAAGTA+AGG | - | chr5.1:525922-525941 | None:intergenic | 40.0% | |
| GGATGTGTAATGTCAAAGGT+AGG | + | chr5.1:526298-526317 | MS.gene92338:intron | 40.0% | |
| TACAAAGACAGGGACCAAAT+TGG | + | chr5.1:528408-528427 | MS.gene92338:intron | 40.0% | |
| TACAAAGACAGGGACCAAAT+TGG | - | chr5.1:528427-528408 | None:intergenic | 40.0% | |
| TCGTTGAGAATCTGATGTTC+CGG | - | chr5.1:525885-525904 | None:intergenic | 40.0% | |
| TGCTTCAGTATAACTGTTGC+TGG | + | chr5.1:525796-525815 | MS.gene92338:intron | 40.0% | |
| TTCAATGGAATCAAGCTAGC+AGG | + | chr5.1:528573-528592 | MS.gene92338:intron | 40.0% | |
| TTGGTTAGAGGCAAATGGTT+GGG | - | chr5.1:527191-527210 | None:intergenic | 40.0% | |
| TTTCCTGAAGAAGCCAAAGT+CGG | + | chr5.1:525462-525481 | MS.gene92338:CDS | 40.0% | |
| TTTGGTTAGAGGCAAATGGT+TGG | - | chr5.1:527192-527211 | None:intergenic | 40.0% | |
| ! | GCATTTGCATCACTGTTTTG+CGG | - | chr5.1:525293-525312 | None:intergenic | 40.0% |
| ! | GGGTTTGTGTCTTGTCATTT+CGG | + | chr5.1:527910-527929 | MS.gene92338:intron | 40.0% |
| ! | TCATTGATAGTCCTGAGTAC+AGG | + | chr5.1:527886-527905 | MS.gene92338:intron | 40.0% |
| !!! | CATTGTTTTCACACCGACTT+TGG | - | chr5.1:525478-525497 | None:intergenic | 40.0% |
| AAAGACAGGGACCAAATTGG+TGG | + | chr5.1:528411-528430 | MS.gene92338:intron | 45.0% | |
| AAAGACAGGGACCAAATTGG+TGG | - | chr5.1:528430-528411 | None:intergenic | 45.0% | |
| AAAGACCGAAACTACCTCGT+CGG | + | chr5.1:525315-525334 | MS.gene92338:CDS | 45.0% | |
| AATCACCGACGAGGTAGTTT+CGG | - | chr5.1:525323-525342 | None:intergenic | 45.0% | |
| AATGGCATAGTTCCACCTAG+TGG | - | chr5.1:527100-527119 | None:intergenic | 45.0% | |
| ACTGCGCTTAGAATTTGTGG+AGG | + | chr5.1:526779-526798 | MS.gene92338:intron | 45.0% | |
| AGATATTATGGCCTGAAGCG+TGG | + | chr5.1:528953-528972 | MS.gene92338:CDS | 45.0% | |
| CAAACGGAAGGTAAGAAAGG+CGG | + | chr5.1:527130-527149 | MS.gene92338:intron | 45.0% | |
| CAAGGAAGCTTGATGTTGCA+GGG | - | chr5.1:526676-526695 | None:intergenic | 45.0% | |
| CAATTAAGTCCCTCGTCATG+TGG | - | chr5.1:528318-528337 | None:intergenic | 45.0% | |
| CACCAAACGGAAGGTAAGAA+AGG | + | chr5.1:527127-527146 | MS.gene92338:intron | 45.0% | |
| CATCTCTTCAGTTGAGTGGA+CGG | - | chr5.1:527319-527338 | None:intergenic | 45.0% | |
| CCAGTGAGACTTGAAAGTGA+AGG | - | chr5.1:527030-527049 | None:intergenic | 45.0% | |
| GAGGCAGCGAAAGATTTAAG+AGG | + | chr5.1:526798-526817 | MS.gene92338:intron | 45.0% | |
| GCCATTAGCTGAACACCAAA+CGG | + | chr5.1:527114-527133 | MS.gene92338:intron | 45.0% | |
| GCTACCTAGAATCCAGGTAA+CGG | + | chr5.1:528919-528938 | MS.gene92338:intron | 45.0% | |
| TAACAACTTGTCCACGCTTC+AGG | - | chr5.1:528967-528986 | None:intergenic | 45.0% | |
| TATCTTCCTGCAGTCTCACT+TGG | - | chr5.1:529001-529020 | None:intergenic | 45.0% | |
| TCGGATTAACGCATCTAAGC+AGG | - | chr5.1:527641-527660 | None:intergenic | 45.0% | |
| TCTGTACATATGTTGCCGTC+TGG | + | chr5.1:527291-527310 | MS.gene92338:intron | 45.0% | |
| TTAACGCATCTAAGCAGGCA+AGG | - | chr5.1:527636-527655 | None:intergenic | 45.0% | |
| TTAACGCATCTACGCAGGTA+AGG | - | chr5.1:527522-527541 | None:intergenic | 45.0% | |
| TTAGCTGAACACCAAACGGA+AGG | + | chr5.1:527118-527137 | MS.gene92338:intron | 45.0% | |
| TTCTCAGCTACCTAGAATCC+AGG | + | chr5.1:528913-528932 | MS.gene92338:intron | 45.0% | |
| TTGGGATAAGTATGTGCTGC+TGG | - | chr5.1:527173-527192 | None:intergenic | 45.0% | |
| TTTGGCAAAGGGAGTAAGAC+TGG | - | chr5.1:525562-525581 | None:intergenic | 45.0% | |
| ! | AAAAGAGCATGTGCTTGTGC+CGG | + | chr5.1:525863-525882 | MS.gene92338:CDS | 45.0% |
| ! | CCTTCACTTTCAAGTCTCAC+TGG | + | chr5.1:527027-527046 | MS.gene92338:intron | 45.0% |
| ! | GGTCATCTCGTTCATCCTTT+TGG | + | chr5.1:526543-526562 | MS.gene92338:intron | 45.0% |
| ! | TTGATAGTCCTGAGTACAGG+CGG | + | chr5.1:527889-527908 | MS.gene92338:intron | 45.0% |
| !! | ACTGGCTTGTCTCAGCAAAA+TGG | - | chr5.1:527473-527492 | None:intergenic | 45.0% |
| !! | TCCGTTTGGTGTTCAGCTAA+TGG | - | chr5.1:527118-527137 | None:intergenic | 45.0% |
| !! | TCGGTGTTGACCAATATGTC+AGG | - | chr5.1:525705-525724 | None:intergenic | 45.0% |
| AACGAGATGACCAGCACAGA+GGG | - | chr5.1:526535-526554 | None:intergenic | 50.0% | |
| ATGTGTCCTTCTAGTCCGAG+AGG | + | chr5.1:525761-525780 | MS.gene92338:intron | 50.0% | |
| CGCCTTTCTTACCTTCCGTT+TGG | - | chr5.1:527132-527151 | None:intergenic | 50.0% | |
| GATCAGCGGAAACGTCCAAA+AGG | - | chr5.1:526561-526580 | None:intergenic | 50.0% | |
| GCAAGGAAGCTTGATGTTGC+AGG | - | chr5.1:526677-526696 | None:intergenic | 50.0% | |
| GGATCCGTTACCTGGATTCT+AGG | - | chr5.1:528926-528945 | None:intergenic | 50.0% | |
| TCGGATTAACGCATCTACGC+AGG | - | chr5.1:527527-527546 | None:intergenic | 50.0% | |
| TGAGTTCGAAATCACCGACG+AGG | - | chr5.1:525332-525351 | None:intergenic | 50.0% | |
| TGATAGTCCTGAGTACAGGC+GGG | + | chr5.1:527890-527909 | MS.gene92338:intron | 50.0% | |
| TTGCAACAGGATCCGTTACC+TGG | - | chr5.1:528934-528953 | None:intergenic | 50.0% | |
| !! | ACACCGACTTTGGCTTCTTC+AGG | - | chr5.1:525468-525487 | None:intergenic | 50.0% |
| !! | GAGTCTTCAGCTGGTTCTAC+TGG | - | chr5.1:527491-527510 | None:intergenic | 50.0% |
| ACACAAACCCGCCTGTACTC+AGG | - | chr5.1:527900-527919 | None:intergenic | 55.0% | |
| ACGAGATGACCAGCACAGAG+GGG | - | chr5.1:526534-526553 | None:intergenic | 55.0% | |
| GAACGAGATGACCAGCACAG+AGG | - | chr5.1:526536-526555 | None:intergenic | 55.0% | |
| GCACAAGCACAGACACCTCT+CGG | - | chr5.1:525779-525798 | None:intergenic | 55.0% | |
| GTGTGTGTGTGTGTGTGTGC+AGG | + | chr5.1:525818-525837 | MS.gene92338:intron | 55.0% | |
| TGACCAGCACAGAGGGGAAT+AGG | - | chr5.1:526528-526547 | None:intergenic | 55.0% | |
| TGTGTGTGTGTGTGTGCAGG+AGG | + | chr5.1:525821-525840 | MS.gene92338:intron | 55.0% | |
| TTCCTGCAGTCTCACTTGGC+CGG | - | chr5.1:528997-529016 | None:intergenic | 55.0% | |
| TTGCCTATTCCCCTCTGTGC+TGG | + | chr5.1:526522-526541 | MS.gene92338:intron | 55.0% | |
| ! | CAGACACCTCTCGGACTAGA+AGG | - | chr5.1:525770-525789 | None:intergenic | 55.0% |
| ATCCGGCCAAGTGAGACTGC+AGG | + | chr5.1:528992-529011 | MS.gene92338:CDS | 60.0% | |
| GTGTGTGTGTGTGCAGGAGG+CGG | + | chr5.1:525824-525843 | MS.gene92338:intron | 60.0% | |
| GTTGAGTGGACGGAGCCAGA+CGG | - | chr5.1:527309-527328 | None:intergenic | 60.0% | |
| TGTGCAGGAGGCGGAGTTGC+TGG | + | chr5.1:525833-525852 | MS.gene92338:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 525249 | 529045 | 525249 | ID=MS.gene92338 |
| chr5.1 | mRNA | 525249 | 529045 | 525249 | ID=MS.gene92338.t1;Parent=MS.gene92338 |
| chr5.1 | exon | 525249 | 525629 | 525249 | ID=MS.gene92338.t1.exon1;Parent=MS.gene92338.t1 |
| chr5.1 | CDS | 525249 | 525629 | 525249 | ID=cds.MS.gene92338.t1;Parent=MS.gene92338.t1 |
| chr5.1 | exon | 525840 | 525953 | 525840 | ID=MS.gene92338.t1.exon2;Parent=MS.gene92338.t1 |
| chr5.1 | CDS | 525840 | 525953 | 525840 | ID=cds.MS.gene92338.t1;Parent=MS.gene92338.t1 |
| chr5.1 | exon | 528920 | 529045 | 528920 | ID=MS.gene92338.t1.exon3;Parent=MS.gene92338.t1 |
| chr5.1 | CDS | 528920 | 529045 | 528920 | ID=cds.MS.gene92338.t1;Parent=MS.gene92338.t1 |
| Gene Sequence |
| Protein sequence |
