Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015284.t1 | XP_003611535.1 | 98.5 | 481 | 6 | 1 | 1 | 480 | 1 | 481 | 4.90E-275 | 956.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015284.t1 | Q42881 | 75.5 | 477 | 108 | 4 | 1 | 477 | 1 | 468 | 6.1e-210 | 731.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015284.t1 | G7K167 | 98.5 | 481 | 6 | 1 | 1 | 480 | 1 | 481 | 3.5e-275 | 956.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene66342 | MS.gene015284 | PPI |
| MS.gene030294 | MS.gene015284 | PPI |
| MS.gene015284 | MS.gene66343 | PPI |
| MS.gene015284 | MS.gene006416 | PPI |
| MS.gene015284 | MS.gene55882 | PPI |
| MS.gene015284 | MS.gene20161 | PPI |
| MS.gene015284 | MS.gene006415 | PPI |
| MS.gene015284 | MS.gene20160 | PPI |
| MS.gene015284 | MS.gene049022 | PPI |
| MS.gene015284 | MS.gene55883 | PPI |
| MS.gene015284 | MS.gene75059 | PPI |
| MS.gene015284 | MS.gene06176 | PPI |
| MS.gene015284 | MS.gene06177 | PPI |
| MS.gene015284 | MS.gene049021 | PPI |
| MS.gene064035 | MS.gene015284 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015284.t1 | MTR_5g015020 | 98.545 | 481 | 6 | 1 | 1 | 480 | 1 | 481 | 0.0 | 990 |
| MS.gene015284.t1 | MTR_4g097540 | 83.160 | 481 | 69 | 5 | 1 | 479 | 1 | 471 | 0.0 | 830 |
| MS.gene015284.t1 | MTR_3g103550 | 70.766 | 431 | 120 | 4 | 3 | 432 | 1 | 426 | 0.0 | 654 |
| MS.gene015284.t1 | MTR_6g091760 | 61.806 | 432 | 156 | 5 | 4 | 435 | 14 | 436 | 0.0 | 560 |
| MS.gene015284.t1 | MTR_8g101750 | 60.508 | 433 | 154 | 6 | 4 | 435 | 12 | 428 | 0.0 | 541 |
| MS.gene015284.t1 | MTR_8g098930 | 54.464 | 448 | 197 | 5 | 2 | 449 | 10 | 450 | 0.0 | 535 |
| MS.gene015284.t1 | MTR_8g028600 | 53.580 | 433 | 192 | 3 | 2 | 434 | 9 | 432 | 4.77e-178 | 508 |
| MS.gene015284.t1 | MTR_7g079080 | 53.009 | 432 | 195 | 3 | 2 | 433 | 9 | 432 | 4.95e-176 | 503 |
| MS.gene015284.t1 | MTR_8g101820 | 55.991 | 434 | 159 | 8 | 4 | 435 | 12 | 415 | 1.40e-171 | 489 |
| MS.gene015284.t1 | MTR_6g463260 | 44.316 | 431 | 230 | 4 | 4 | 433 | 104 | 525 | 1.04e-141 | 417 |
| MS.gene015284.t1 | MTR_7g079080 | 53.134 | 335 | 149 | 3 | 99 | 433 | 1 | 327 | 7.65e-133 | 389 |
| MS.gene015284.t1 | MTR_5g011400 | 41.546 | 414 | 233 | 4 | 16 | 429 | 84 | 488 | 3.01e-122 | 366 |
| MS.gene015284.t1 | MTR_2g090730 | 89.247 | 93 | 6 | 1 | 57 | 149 | 12 | 100 | 1.28e-52 | 176 |
| MS.gene015284.t1 | MTR_5g033230 | 26.733 | 202 | 134 | 7 | 79 | 276 | 100 | 291 | 1.03e-14 | 76.6 |
| MS.gene015284.t1 | MTR_5g033230 | 26.733 | 202 | 134 | 7 | 79 | 276 | 100 | 291 | 1.16e-14 | 76.6 |
| MS.gene015284.t1 | MTR_4g011820 | 22.792 | 351 | 227 | 12 | 87 | 430 | 69 | 382 | 4.33e-13 | 71.2 |
| MS.gene015284.t1 | MTR_8g023140 | 23.304 | 339 | 236 | 11 | 112 | 432 | 182 | 514 | 6.02e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015284.t1 | AT4G37770 | 72.141 | 481 | 121 | 6 | 1 | 480 | 1 | 469 | 0.0 | 722 |
| MS.gene015284.t1 | AT3G49700 | 73.333 | 480 | 118 | 6 | 1 | 480 | 1 | 470 | 0.0 | 717 |
| MS.gene015284.t1 | AT5G65800 | 72.083 | 480 | 124 | 5 | 1 | 480 | 1 | 470 | 0.0 | 709 |
| MS.gene015284.t1 | AT2G22810 | 71.458 | 480 | 131 | 5 | 1 | 480 | 1 | 474 | 0.0 | 701 |
| MS.gene015284.t1 | AT4G08040 | 63.753 | 469 | 154 | 5 | 3 | 471 | 1 | 453 | 0.0 | 625 |
| MS.gene015284.t1 | AT4G26200 | 59.861 | 431 | 165 | 4 | 4 | 433 | 18 | 441 | 0.0 | 530 |
| MS.gene015284.t1 | AT1G01480 | 54.233 | 437 | 193 | 5 | 3 | 438 | 11 | 441 | 6.70e-180 | 513 |
| MS.gene015284.t1 | AT3G61510 | 53.580 | 433 | 190 | 5 | 2 | 434 | 9 | 430 | 3.82e-179 | 511 |
| MS.gene015284.t1 | AT4G11280 | 53.917 | 434 | 192 | 4 | 1 | 434 | 12 | 437 | 1.37e-174 | 500 |
| MS.gene015284.t1 | AT1G01480 | 55.718 | 341 | 144 | 5 | 99 | 438 | 1 | 335 | 1.40e-141 | 412 |
| MS.gene015284.t1 | AT5G51690 | 42.757 | 428 | 235 | 5 | 4 | 430 | 69 | 487 | 7.69e-133 | 393 |
| MS.gene015284.t1 | AT1G62960 | 43.023 | 430 | 228 | 9 | 4 | 430 | 132 | 547 | 6.10e-125 | 375 |
| MS.gene015284.t1 | AT5G51690 | 42.520 | 381 | 202 | 5 | 50 | 430 | 1 | 364 | 2.65e-115 | 344 |
| MS.gene015284.t1 | AT1G70580 | 24.476 | 286 | 189 | 12 | 79 | 348 | 100 | 374 | 3.45e-17 | 84.3 |
| MS.gene015284.t1 | AT1G70580 | 24.476 | 286 | 189 | 12 | 79 | 348 | 100 | 374 | 3.45e-17 | 84.3 |
| MS.gene015284.t1 | AT1G70580 | 24.476 | 286 | 189 | 12 | 79 | 348 | 100 | 374 | 3.45e-17 | 84.3 |
| MS.gene015284.t1 | AT1G70580 | 24.476 | 286 | 189 | 12 | 79 | 348 | 100 | 374 | 3.45e-17 | 84.3 |
| MS.gene015284.t1 | AT1G23310 | 27.119 | 177 | 123 | 5 | 79 | 253 | 100 | 272 | 1.71e-16 | 82.0 |
| MS.gene015284.t1 | AT1G23310 | 27.119 | 177 | 123 | 5 | 79 | 253 | 100 | 272 | 2.62e-16 | 81.6 |
| MS.gene015284.t1 | AT1G72330 | 26.012 | 346 | 222 | 15 | 110 | 432 | 196 | 530 | 1.66e-14 | 76.3 |
| MS.gene015284.t1 | AT1G72330 | 30.303 | 132 | 89 | 3 | 110 | 240 | 196 | 325 | 2.03e-13 | 72.4 |
| MS.gene015284.t1 | AT1G17290 | 21.774 | 372 | 269 | 11 | 77 | 432 | 168 | 533 | 2.06e-13 | 72.8 |
| MS.gene015284.t1 | AT1G72330 | 24.791 | 359 | 223 | 15 | 110 | 432 | 196 | 543 | 2.97e-12 | 69.3 |
| MS.gene015284.t1 | AT1G80360 | 23.810 | 357 | 215 | 14 | 87 | 430 | 69 | 381 | 5.79e-12 | 67.8 |
| MS.gene015284.t1 | AT1G80360 | 23.810 | 357 | 215 | 14 | 87 | 430 | 69 | 381 | 5.79e-12 | 67.8 |
| MS.gene015284.t1 | AT1G80360 | 23.810 | 357 | 215 | 14 | 87 | 430 | 69 | 381 | 5.79e-12 | 67.8 |
| MS.gene015284.t1 | AT1G80360 | 23.810 | 357 | 215 | 14 | 87 | 430 | 69 | 381 | 5.79e-12 | 67.8 |
| MS.gene015284.t1 | AT4G28420 | 22.841 | 359 | 232 | 13 | 87 | 432 | 103 | 429 | 7.04e-12 | 67.8 |
| MS.gene015284.t1 | AT4G23600 | 23.099 | 355 | 236 | 12 | 87 | 432 | 78 | 404 | 1.66e-11 | 66.6 |
Find 95 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAGACACCTTTGACTTTA+AGG | 0.051253 | 5.4:+8707778 | None:intergenic |
| ACTGCACCCTTCACCATTAA+TGG | 0.203371 | 5.4:+8707038 | None:intergenic |
| CTTAGCTATGAAAAGGTTAA+AGG | 0.260676 | 5.4:-8707076 | MS.gene015284:CDS |
| ACTACGTACCCTGGGTAATA+AGG | 0.296823 | 5.4:+8708041 | None:intergenic |
| TTTGTTGCAAACTCCATTAA+TGG | 0.303571 | 5.4:-8707051 | MS.gene015284:CDS |
| ACCTGGCAAACCCAAGTCTT+TGG | 0.314092 | 5.4:+8707521 | None:intergenic |
| TAAGATCATTTCTTTCCTTA+AGG | 0.335369 | 5.4:+8707595 | None:intergenic |
| GAAAGCATTGGTAGATTTCA+TGG | 0.343370 | 5.4:-8708192 | MS.gene015284:CDS |
| CGAAGAAATCTATTTCCAAT+TGG | 0.345373 | 5.4:-8706972 | MS.gene015284:CDS |
| CGTTTGAATCCAGCTACATC+TGG | 0.348486 | 5.4:+8708281 | None:intergenic |
| AAATACATTTGAAGCTGAAA+TGG | 0.350097 | 5.4:-8707220 | MS.gene015284:CDS |
| AATGGGCCTTGCAGAGAATC+AGG | 0.355872 | 5.4:-8708695 | MS.gene015284:intron |
| AGAGACCTAAAATGGAGAAC+TGG | 0.364057 | 5.4:-8707897 | MS.gene015284:CDS |
| CAAGATTCTTCATATTTCCT+AGG | 0.370017 | 5.4:-8708778 | MS.gene015284:CDS |
| GCAACGAAAATGTCGAGTTT+TGG | 0.378850 | 5.4:-8707450 | MS.gene015284:CDS |
| TCATGTCATTGCACCGAACC+TGG | 0.380869 | 5.4:-8707144 | MS.gene015284:CDS |
| CCCATTTGAATAATTCCCTT+GGG | 0.387982 | 5.4:+8708712 | None:intergenic |
| TAAGGAAAGAAATGATCTTA+AGG | 0.388499 | 5.4:-8707592 | MS.gene015284:CDS |
| GCAAAGCCGATTCTGTGATT+TGG | 0.393738 | 5.4:+8707832 | None:intergenic |
| GAAGAAATCTATTTCCAATT+GGG | 0.406948 | 5.4:-8706971 | MS.gene015284:CDS |
| CAAATGTATTTGAATTAAGA+AGG | 0.409557 | 5.4:+8707232 | None:intergenic |
| AGAAGATATTATTCGATGTT+CGG | 0.411380 | 5.4:-8707188 | MS.gene015284:CDS |
| TCCAAAGACTTGGGTTTGCC+AGG | 0.411783 | 5.4:-8707522 | MS.gene015284:CDS |
| GATTTGATAGAGACCTAAAA+TGG | 0.416741 | 5.4:-8707905 | MS.gene015284:CDS |
| TTTGAGCTTGTGCATTGTAT+TGG | 0.416870 | 5.4:+8707861 | None:intergenic |
| CTAGGAAATATGAAGAATCT+TGG | 0.418153 | 5.4:+8708779 | None:intergenic |
| ATAAACGATATGAACTCTTT+CGG | 0.420519 | 5.4:+8707551 | None:intergenic |
| TTGAAGCTGAAATGGAACTA+TGG | 0.421415 | 5.4:-8707212 | MS.gene015284:CDS |
| CAGTGTCATGGAAATCCTTA+AGG | 0.422050 | 5.4:-8707610 | MS.gene015284:CDS |
| CCCCAAGGGAATTATTCAAA+TGG | 0.429955 | 5.4:-8708713 | MS.gene015284:CDS |
| CGTAAAACTTCTAGAAGCTT+GGG | 0.433016 | 5.4:+8706993 | None:intergenic |
| TCGTAAAACTTCTAGAAGCT+TGG | 0.437659 | 5.4:+8706992 | None:intergenic |
| GCTGTTAGAACAATGTGGTT+TGG | 0.438391 | 5.4:+8708137 | None:intergenic |
| ACCAATGCTTTCTTGAAAGA+AGG | 0.439628 | 5.4:+8708203 | None:intergenic |
| GTAGTGCCTAGTGGGTTTGA+TGG | 0.441338 | 5.4:+8707747 | None:intergenic |
| GCCCATTTGAATAATTCCCT+TGG | 0.452199 | 5.4:+8708711 | None:intergenic |
| AAGGTAGACCATGGTAGTCT+TGG | 0.461144 | 5.4:+8708222 | None:intergenic |
| CATTAAACTTAGCTATGAAA+AGG | 0.483162 | 5.4:-8707083 | MS.gene015284:CDS |
| GCTAAGAACCCAGATGTAGC+TGG | 0.483190 | 5.4:-8708290 | MS.gene015284:CDS |
| TCTCATATTCTTGCCACCCT+AGG | 0.485179 | 5.4:+8708761 | None:intergenic |
| TGTCTCAAAACAAATAATGC+TGG | 0.496154 | 5.4:-8707282 | MS.gene015284:CDS |
| TAACTTCCAAATCACAGAAT+CGG | 0.496716 | 5.4:-8707838 | MS.gene015284:CDS |
| AACACGAAACCACCCAGGTT+CGG | 0.497469 | 5.4:+8707131 | None:intergenic |
| GGTTTGCCAGGTTTCCGTGT+AGG | 0.498693 | 5.4:-8707510 | MS.gene015284:CDS |
| TTGACATTGTAGTGCCTAGT+GGG | 0.500135 | 5.4:+8707739 | None:intergenic |
| CCCAAGGGAATTATTCAAAT+GGG | 0.502528 | 5.4:-8708712 | MS.gene015284:CDS |
| AACCACATTGTTCTAACAGC+TGG | 0.513432 | 5.4:-8708134 | MS.gene015284:CDS |
| GAGTGTCTCATTTGCAGAAG+TGG | 0.513434 | 5.4:+8708109 | None:intergenic |
| AAGATTCTTCATATTTCCTA+GGG | 0.523269 | 5.4:-8708777 | MS.gene015284:CDS |
| ACCTTCTTTCAAGAAAGCAT+TGG | 0.525726 | 5.4:-8708204 | MS.gene015284:CDS |
| TTATAGTCTATCCAAAGACT+TGG | 0.525935 | 5.4:-8707532 | MS.gene015284:CDS |
| TTCCCACTCCTTATTACCCA+GGG | 0.526414 | 5.4:-8708049 | MS.gene015284:intron |
| CTTCCCACTCCTTATTACCC+AGG | 0.527471 | 5.4:-8708050 | MS.gene015284:CDS |
| ATAAGTGACGAAATTTACTC+AGG | 0.531938 | 5.4:-8707660 | MS.gene015284:CDS |
| AACAAGAACCTTAAAGTCAA+AGG | 0.545404 | 5.4:-8707786 | MS.gene015284:CDS |
| ATTCTTCATATTTCCTAGGG+TGG | 0.549169 | 5.4:-8708774 | MS.gene015284:CDS |
| GAGACCTAAAATGGAGAACT+GGG | 0.550316 | 5.4:-8707896 | MS.gene015284:CDS |
| TCCGAGTTTCATCAGTGTCA+TGG | 0.550388 | 5.4:-8707622 | MS.gene015284:CDS |
| GATTTCATGGCTGAGATTCG+AGG | 0.551442 | 5.4:-8708179 | MS.gene015284:CDS |
| ATAGCGCCTACACGGAAACC+TGG | 0.551973 | 5.4:+8707504 | None:intergenic |
| CATGTCATTGCACCGAACCT+GGG | 0.557249 | 5.4:-8707143 | MS.gene015284:CDS |
| TATAGTCTATCCAAAGACTT+GGG | 0.560364 | 5.4:-8707531 | MS.gene015284:CDS |
| CTTTGATGAAGTCAACGAGA+AGG | 0.561638 | 5.4:+8707703 | None:intergenic |
| GTTTGAATCCAGCTACATCT+GGG | 0.563494 | 5.4:+8708282 | None:intergenic |
| TATCTCCTCTCATCTATGCT+AGG | 0.566553 | 5.4:-8707405 | MS.gene015284:CDS |
| TCCATGACACTGATGAAACT+CGG | 0.567201 | 5.4:+8707621 | None:intergenic |
| TTTGACATTGTAGTGCCTAG+TGG | 0.577255 | 5.4:+8707738 | None:intergenic |
| CAGAATAGATAGCGCCTACA+CGG | 0.579609 | 5.4:+8707496 | None:intergenic |
| AGTTAACCTGATTCTCTGCA+AGG | 0.590703 | 5.4:+8708689 | None:intergenic |
| GCAAACTCCATTAATGGTGA+AGG | 0.593150 | 5.4:-8707045 | MS.gene015284:CDS |
| GTTCGGTTGAACATTTCACC+TGG | 0.597060 | 5.4:-8707171 | MS.gene015284:CDS |
| AAGCTTCTCCTTGTTCAGCA+AGG | 0.599299 | 5.4:+8708078 | None:intergenic |
| GTAGCTGGATTCAAACGTGA+TGG | 0.600691 | 5.4:-8708275 | MS.gene015284:CDS |
| AAAGCCACATGCAACTCTCA+TGG | 0.602554 | 5.4:-8708802 | MS.gene015284:CDS |
| TAAGTGACGAAATTTACTCA+GGG | 0.606958 | 5.4:-8707659 | MS.gene015284:CDS |
| TACCCTGGGTAATAAGGAGT+GGG | 0.613428 | 5.4:+8708047 | None:intergenic |
| CCATTTGAATAATTCCCTTG+GGG | 0.613853 | 5.4:+8708713 | None:intergenic |
| TGTCACCTAGCATAGATGAG+AGG | 0.616320 | 5.4:+8707400 | None:intergenic |
| TGATGAAGTTCAAAACCCCA+AGG | 0.617608 | 5.4:-8708728 | MS.gene015284:CDS |
| GTGCAATGACATGAAGCACC+AGG | 0.624795 | 5.4:+8707153 | None:intergenic |
| TGAAAACGACATGGTCGTTG+CGG | 0.625488 | 5.4:-8707475 | MS.gene015284:CDS |
| CAAACTCCATTAATGGTGAA+GGG | 0.626301 | 5.4:-8707044 | MS.gene015284:CDS |
| GTACCCTGGGTAATAAGGAG+TGG | 0.633094 | 5.4:+8708046 | None:intergenic |
| GCTCTCTTCCAAGACTACCA+TGG | 0.637227 | 5.4:-8708230 | MS.gene015284:CDS |
| CTGGGTAATAAGGAGTGGGA+AGG | 0.641068 | 5.4:+8708051 | None:intergenic |
| GTCATTGCACCGAACCTGGG+TGG | 0.644838 | 5.4:-8707140 | MS.gene015284:CDS |
| ACAAATCCATCAAACCCACT+AGG | 0.656298 | 5.4:-8707753 | MS.gene015284:CDS |
| GATGAAGTTCAAAACCCCAA+GGG | 0.661842 | 5.4:-8708727 | MS.gene015284:CDS |
| TCTTGAAAGAAGGTAGACCA+TGG | 0.675537 | 5.4:+8708213 | None:intergenic |
| CACCAGCTGTTAGAACAATG+TGG | 0.689195 | 5.4:+8708132 | None:intergenic |
| TATCTATTCTGAAAACGACA+TGG | 0.701566 | 5.4:-8707484 | MS.gene015284:CDS |
| AAACAAACACGAAACCACCC+AGG | 0.702988 | 5.4:+8707126 | None:intergenic |
| TTGGCCATGAGAGTTGCATG+TGG | 0.737064 | 5.4:+8708798 | None:intergenic |
| AGACCTAAAATGGAGAACTG+GGG | 0.753019 | 5.4:-8707895 | MS.gene015284:CDS |
| GACACTGATGAAACTCGGAG+AGG | 0.753561 | 5.4:+8707626 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATGTCTAAATAATTA+AGG | - | chr5.4:8707366-8707385 | MS.gene015284:CDS | 10.0% |
| !!! | TTCTTAATTAAGATTTTTTT+TGG | + | chr5.4:8707272-8707291 | None:intergenic | 10.0% |
| !! | AAATCTGCATATAAAAATAT+TGG | + | chr5.4:8707824-8707843 | None:intergenic | 15.0% |
| !! | ATTATTTAGACATTATATGA+TGG | + | chr5.4:8707364-8707383 | None:intergenic | 15.0% |
| !! | TAAATAAAAATATGGTTGTT+AGG | + | chr5.4:8707105-8707124 | None:intergenic | 15.0% |
| !! | AAGCACACTAAATAAAAATA+TGG | + | chr5.4:8707113-8707132 | None:intergenic | 20.0% |
| !! | CAAATGTATTTGAATTAAGA+AGG | + | chr5.4:8708515-8708534 | None:intergenic | 20.0% |
| !!! | ACATTTTTGAGAATCAAAAT+AGG | - | chr5.4:8708385-8708404 | MS.gene015284:intron | 20.0% |
| ! | AAGATTCTTCATATTTCCTA+GGG | - | chr5.4:8706967-8706986 | MS.gene015284:CDS | 25.0% |
| ! | AGAAGATATTATTCGATGTT+CGG | - | chr5.4:8708556-8708575 | MS.gene015284:intron | 25.0% |
| ! | ATAAACGATATGAACTCTTT+CGG | + | chr5.4:8708196-8708215 | None:intergenic | 25.0% |
| ! | CATTAAACTTAGCTATGAAA+AGG | - | chr5.4:8708661-8708680 | MS.gene015284:intron | 25.0% |
| ! | GAAGAAATCTATTTCCAATT+GGG | - | chr5.4:8708773-8708792 | MS.gene015284:CDS | 25.0% |
| ! | GTCTAAATAATTAAGGTTGT+GGG | - | chr5.4:8707373-8707392 | MS.gene015284:CDS | 25.0% |
| ! | TAAGATCATTTCTTTCCTTA+AGG | + | chr5.4:8708152-8708171 | None:intergenic | 25.0% |
| ! | TAAGGAAAGAAATGATCTTA+AGG | - | chr5.4:8708152-8708171 | MS.gene015284:CDS | 25.0% |
| ! | TGTCTAAATAATTAAGGTTG+TGG | - | chr5.4:8707372-8707391 | MS.gene015284:CDS | 25.0% |
| !! | AAATACATTTGAAGCTGAAA+TGG | - | chr5.4:8708524-8708543 | MS.gene015284:intron | 25.0% |
| !! | AGACAAAAAATGCTTGTTAA+TGG | - | chr5.4:8708417-8708436 | MS.gene015284:intron | 25.0% |
| !! | AGCTCATCACATAATTTTTA+GGG | - | chr5.4:8707245-8707264 | MS.gene015284:CDS | 25.0% |
| !! | TAGCTCATCACATAATTTTT+AGG | - | chr5.4:8707244-8707263 | MS.gene015284:CDS | 25.0% |
| !!! | ATTATGAAGTTTTGATGTGA+TGG | + | chr5.4:8707173-8707192 | None:intergenic | 25.0% |
| !!! | TTATGAAGTTTTGATGTGAT+GGG | + | chr5.4:8707172-8707191 | None:intergenic | 25.0% |
| AAAATAAATACTACGTACCC+TGG | + | chr5.4:8707715-8707734 | None:intergenic | 30.0% | |
| AAATAAATACTACGTACCCT+GGG | + | chr5.4:8707714-8707733 | None:intergenic | 30.0% | |
| AACAAGAACCTTAAAGTCAA+AGG | - | chr5.4:8707958-8707977 | MS.gene015284:intron | 30.0% | |
| ATAAGTGACGAAATTTACTC+AGG | - | chr5.4:8708084-8708103 | MS.gene015284:CDS | 30.0% | |
| CAAGATTCTTCATATTTCCT+AGG | - | chr5.4:8706966-8706985 | MS.gene015284:CDS | 30.0% | |
| CGAAGAAATCTATTTCCAAT+TGG | - | chr5.4:8708772-8708791 | MS.gene015284:CDS | 30.0% | |
| CTAGGAAATATGAAGAATCT+TGG | + | chr5.4:8706968-8706987 | None:intergenic | 30.0% | |
| CTTAGCTATGAAAAGGTTAA+AGG | - | chr5.4:8708668-8708687 | MS.gene015284:intron | 30.0% | |
| GATTTGATAGAGACCTAAAA+TGG | - | chr5.4:8707839-8707858 | MS.gene015284:CDS | 30.0% | |
| TAACTTCCAAATCACAGAAT+CGG | - | chr5.4:8707906-8707925 | MS.gene015284:CDS | 30.0% | |
| TAAGTGACGAAATTTACTCA+GGG | - | chr5.4:8708085-8708104 | MS.gene015284:CDS | 30.0% | |
| TATAGTCTATCCAAAGACTT+GGG | - | chr5.4:8708213-8708232 | MS.gene015284:CDS | 30.0% | |
| TGTCTCAAAACAAATAATGC+TGG | - | chr5.4:8708462-8708481 | MS.gene015284:intron | 30.0% | |
| TTAGACATTATATGATGGCT+TGG | + | chr5.4:8707359-8707378 | None:intergenic | 30.0% | |
| TTATAGTCTATCCAAAGACT+TGG | - | chr5.4:8708212-8708231 | MS.gene015284:CDS | 30.0% | |
| TTTGTTGCAAACTCCATTAA+TGG | - | chr5.4:8708693-8708712 | MS.gene015284:intron | 30.0% | |
| ! | CTATTTCCAATTGGGTTTTT+CGG | - | chr5.4:8708781-8708800 | MS.gene015284:CDS | 30.0% |
| ! | TATCTATTCTGAAAACGACA+TGG | - | chr5.4:8708260-8708279 | MS.gene015284:CDS | 30.0% |
| !! | GTTAATGGATTACAAAAAGC+AGG | - | chr5.4:8708432-8708451 | MS.gene015284:intron | 30.0% |
| !!! | GGTTTTGAACTTCATCATAA+GGG | + | chr5.4:8707013-8707032 | None:intergenic | 30.0% |
| ACCAATGCTTTCTTGAAAGA+AGG | + | chr5.4:8707544-8707563 | None:intergenic | 35.0% | |
| ATTCTTCATATTTCCTAGGG+TGG | - | chr5.4:8706970-8706989 | MS.gene015284:CDS | 35.0% | |
| CAAACTCCATTAATGGTGAA+GGG | - | chr5.4:8708700-8708719 | MS.gene015284:CDS | 35.0% | |
| CCATTTGAATAATTCCCTTG+GGG | + | chr5.4:8707034-8707053 | None:intergenic | 35.0% | |
| CCCAAGGGAATTATTCAAAT+GGG | - | chr5.4:8707032-8707051 | MS.gene015284:CDS | 35.0% | |
| CCCATTTGAATAATTCCCTT+GGG | + | chr5.4:8707035-8707054 | None:intergenic | 35.0% | |
| TTGAAGCTGAAATGGAACTA+TGG | - | chr5.4:8708532-8708551 | MS.gene015284:intron | 35.0% | |
| TTTGAGCTTGTGCATTGTAT+TGG | + | chr5.4:8707886-8707905 | None:intergenic | 35.0% | |
| ! | ACCTTCTTTCAAGAAAGCAT+TGG | - | chr5.4:8707540-8707559 | MS.gene015284:CDS | 35.0% |
| ! | CGTAAAACTTCTAGAAGCTT+GGG | + | chr5.4:8708754-8708773 | None:intergenic | 35.0% |
| ! | CTAAGACACCTTTGACTTTA+AGG | + | chr5.4:8707969-8707988 | None:intergenic | 35.0% |
| ! | CTTTTGATCTATTGGAGTCA+TGG | - | chr5.4:8707428-8707447 | MS.gene015284:CDS | 35.0% |
| ! | TCGTAAAACTTCTAGAAGCT+TGG | + | chr5.4:8708755-8708774 | None:intergenic | 35.0% |
| !! | GAAAGCATTGGTAGATTTCA+TGG | - | chr5.4:8707552-8707571 | MS.gene015284:CDS | 35.0% |
| !!! | ATAATGCTGGTTTGTTTTGC+TGG | - | chr5.4:8708475-8708494 | MS.gene015284:intron | 35.0% |
| !!! | GAAAATGTCGAGTTTTGGTT+TGG | - | chr5.4:8708299-8708318 | MS.gene015284:CDS | 35.0% |
| !!! | GGGTTTTGAACTTCATCATA+AGG | + | chr5.4:8707014-8707033 | None:intergenic | 35.0% |
| !!! | TAATGCTGGTTTGTTTTGCT+GGG | - | chr5.4:8708476-8708495 | MS.gene015284:intron | 35.0% |
| AACCACATTGTTCTAACAGC+TGG | - | chr5.4:8707610-8707629 | MS.gene015284:CDS | 40.0% | |
| ACAAATCCATCAAACCCACT+AGG | - | chr5.4:8707991-8708010 | MS.gene015284:intron | 40.0% | |
| AGACCTAAAATGGAGAACTG+GGG | - | chr5.4:8707849-8707868 | MS.gene015284:CDS | 40.0% | |
| AGAGACCTAAAATGGAGAAC+TGG | - | chr5.4:8707847-8707866 | MS.gene015284:CDS | 40.0% | |
| AGATAGCCGAAAAACCCAAT+TGG | + | chr5.4:8708790-8708809 | None:intergenic | 40.0% | |
| AGTTAACCTGATTCTCTGCA+AGG | + | chr5.4:8707058-8707077 | None:intergenic | 40.0% | |
| CAGTGTCATGGAAATCCTTA+AGG | - | chr5.4:8708134-8708153 | MS.gene015284:CDS | 40.0% | |
| CCCCAAGGGAATTATTCAAA+TGG | - | chr5.4:8707031-8707050 | MS.gene015284:CDS | 40.0% | |
| CTTTGATGAAGTCAACGAGA+AGG | + | chr5.4:8708044-8708063 | None:intergenic | 40.0% | |
| GAGACCTAAAATGGAGAACT+GGG | - | chr5.4:8707848-8707867 | MS.gene015284:CDS | 40.0% | |
| GATGAAGTTCAAAACCCCAA+GGG | - | chr5.4:8707017-8707036 | MS.gene015284:CDS | 40.0% | |
| GCAAACTCCATTAATGGTGA+AGG | - | chr5.4:8708699-8708718 | MS.gene015284:CDS | 40.0% | |
| GCCCATTTGAATAATTCCCT+TGG | + | chr5.4:8707036-8707055 | None:intergenic | 40.0% | |
| GCTGTTAGAACAATGTGGTT+TGG | + | chr5.4:8707610-8707629 | None:intergenic | 40.0% | |
| GTTTGAATCCAGCTACATCT+GGG | + | chr5.4:8707465-8707484 | None:intergenic | 40.0% | |
| TATCTCCTCTCATCTATGCT+AGG | - | chr5.4:8708339-8708358 | MS.gene015284:intron | 40.0% | |
| TCCATGACACTGATGAAACT+CGG | + | chr5.4:8708126-8708145 | None:intergenic | 40.0% | |
| TCTTGAAAGAAGGTAGACCA+TGG | + | chr5.4:8707534-8707553 | None:intergenic | 40.0% | |
| TGATGAAGTTCAAAACCCCA+AGG | - | chr5.4:8707016-8707035 | MS.gene015284:CDS | 40.0% | |
| TTGACATTGTAGTGCCTAGT+GGG | + | chr5.4:8708008-8708027 | None:intergenic | 40.0% | |
| TTTGACATTGTAGTGCCTAG+TGG | + | chr5.4:8708009-8708028 | None:intergenic | 40.0% | |
| ! | ATGTTTTGCCTTGCTGAACA+AGG | - | chr5.4:8707658-8707677 | MS.gene015284:CDS | 40.0% |
| ! | GCAACGAAAATGTCGAGTTT+TGG | - | chr5.4:8708294-8708313 | MS.gene015284:CDS | 40.0% |
| ! | GCAGCTGTCTTTTGATCTAT+TGG | - | chr5.4:8707420-8707439 | MS.gene015284:CDS | 40.0% |
| AAACAAACACGAAACCACCC+AGG | + | chr5.4:8708621-8708640 | None:intergenic | 45.0% | |
| AAAGCCACATGCAACTCTCA+TGG | - | chr5.4:8706942-8706961 | MS.gene015284:CDS | 45.0% | |
| AAGCTTCTCCTTGTTCAGCA+AGG | + | chr5.4:8707669-8707688 | None:intergenic | 45.0% | |
| AAGGTAGACCATGGTAGTCT+TGG | + | chr5.4:8707525-8707544 | None:intergenic | 45.0% | |
| ACTACGTACCCTGGGTAATA+AGG | + | chr5.4:8707706-8707725 | None:intergenic | 45.0% | |
| ACTGCACCCTTCACCATTAA+TGG | + | chr5.4:8708709-8708728 | None:intergenic | 45.0% | |
| CACCAGCTGTTAGAACAATG+TGG | + | chr5.4:8707615-8707634 | None:intergenic | 45.0% | |
| CAGAATAGATAGCGCCTACA+CGG | + | chr5.4:8708251-8708270 | None:intergenic | 45.0% | |
| CGTTTGAATCCAGCTACATC+TGG | + | chr5.4:8707466-8707485 | None:intergenic | 45.0% | |
| GAGTGTCTCATTTGCAGAAG+TGG | + | chr5.4:8707638-8707657 | None:intergenic | 45.0% | |
| GATTTCATGGCTGAGATTCG+AGG | - | chr5.4:8707565-8707584 | MS.gene015284:CDS | 45.0% | |
| GTAGCTGGATTCAAACGTGA+TGG | - | chr5.4:8707469-8707488 | MS.gene015284:CDS | 45.0% | |
| GTTCGGTTGAACATTTCACC+TGG | - | chr5.4:8708573-8708592 | MS.gene015284:intron | 45.0% | |
| TACCCTGGGTAATAAGGAGT+GGG | + | chr5.4:8707700-8707719 | None:intergenic | 45.0% | |
| TCCGAGTTTCATCAGTGTCA+TGG | - | chr5.4:8708122-8708141 | MS.gene015284:CDS | 45.0% | |
| TCTCATATTCTTGCCACCCT+AGG | + | chr5.4:8706986-8707005 | None:intergenic | 45.0% | |
| TGAAAACGACATGGTCGTTG+CGG | - | chr5.4:8708269-8708288 | MS.gene015284:CDS | 45.0% | |
| TGTCACCTAGCATAGATGAG+AGG | + | chr5.4:8708347-8708366 | None:intergenic | 45.0% | |
| TTCCCACTCCTTATTACCCA+GGG | - | chr5.4:8707695-8707714 | MS.gene015284:CDS | 45.0% | |
| ! | GCAAAGCCGATTCTGTGATT+TGG | + | chr5.4:8707915-8707934 | None:intergenic | 45.0% |
| AACACGAAACCACCCAGGTT+CGG | + | chr5.4:8708616-8708635 | None:intergenic | 50.0% | |
| AATGGGCCTTGCAGAGAATC+AGG | - | chr5.4:8707049-8707068 | MS.gene015284:CDS | 50.0% | |
| ACCTGGCAAACCCAAGTCTT+TGG | + | chr5.4:8708226-8708245 | None:intergenic | 50.0% | |
| CATGTCATTGCACCGAACCT+GGG | - | chr5.4:8708601-8708620 | MS.gene015284:intron | 50.0% | |
| CTGGGTAATAAGGAGTGGGA+AGG | + | chr5.4:8707696-8707715 | None:intergenic | 50.0% | |
| CTTCCCACTCCTTATTACCC+AGG | - | chr5.4:8707694-8707713 | MS.gene015284:CDS | 50.0% | |
| GACACTGATGAAACTCGGAG+AGG | + | chr5.4:8708121-8708140 | None:intergenic | 50.0% | |
| GCTAAGAACCCAGATGTAGC+TGG | - | chr5.4:8707454-8707473 | MS.gene015284:CDS | 50.0% | |
| GCTCTCTTCCAAGACTACCA+TGG | - | chr5.4:8707514-8707533 | MS.gene015284:CDS | 50.0% | |
| GTACCCTGGGTAATAAGGAG+TGG | + | chr5.4:8707701-8707720 | None:intergenic | 50.0% | |
| TCATGTCATTGCACCGAACC+TGG | - | chr5.4:8708600-8708619 | MS.gene015284:intron | 50.0% | |
| TCCAAAGACTTGGGTTTGCC+AGG | - | chr5.4:8708222-8708241 | MS.gene015284:CDS | 50.0% | |
| TTGGCCATGAGAGTTGCATG+TGG | + | chr5.4:8706949-8706968 | None:intergenic | 50.0% | |
| ! | CGACCCCAGTTCTCCATTTT+AGG | + | chr5.4:8707855-8707874 | None:intergenic | 50.0% |
| ! | GTGCAATGACATGAAGCACC+AGG | + | chr5.4:8708594-8708613 | None:intergenic | 50.0% |
| !! | GTAGTGCCTAGTGGGTTTGA+TGG | + | chr5.4:8708000-8708019 | None:intergenic | 50.0% |
| ATAGCGCCTACACGGAAACC+TGG | + | chr5.4:8708243-8708262 | None:intergenic | 55.0% | |
| GGTTTGCCAGGTTTCCGTGT+AGG | - | chr5.4:8708234-8708253 | MS.gene015284:CDS | 55.0% | |
| GTCATTGCACCGAACCTGGG+TGG | - | chr5.4:8708604-8708623 | MS.gene015284:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 8706924 | 8708842 | 8706924 | ID=MS.gene015284 |
| chr5.4 | mRNA | 8706924 | 8708842 | 8706924 | ID=MS.gene015284.t1;Parent=MS.gene015284 |
| chr5.4 | exon | 8708696 | 8708842 | 8708696 | ID=MS.gene015284.t1.exon1;Parent=MS.gene015284.t1 |
| chr5.4 | CDS | 8708696 | 8708842 | 8708696 | ID=cds.MS.gene015284.t1;Parent=MS.gene015284.t1 |
| chr5.4 | exon | 8708050 | 8708342 | 8708050 | ID=MS.gene015284.t1.exon2;Parent=MS.gene015284.t1 |
| chr5.4 | CDS | 8708050 | 8708342 | 8708050 | ID=cds.MS.gene015284.t1;Parent=MS.gene015284.t1 |
| chr5.4 | exon | 8706924 | 8707926 | 8706924 | ID=MS.gene015284.t1.exon3;Parent=MS.gene015284.t1 |
| chr5.4 | CDS | 8706924 | 8707926 | 8706924 | ID=cds.MS.gene015284.t1;Parent=MS.gene015284.t1 |
| Gene Sequence |
| Protein sequence |
