Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023585.t1 | XP_003629785.1 | 99.4 | 524 | 3 | 0 | 1 | 524 | 1 | 524 | 5.80E-298 | 1032.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023585.t1 | Q94C70 | 83.6 | 524 | 86 | 0 | 1 | 524 | 1 | 524 | 5.8e-262 | 904.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023585.t1 | G7LJF6 | 99.4 | 524 | 3 | 0 | 1 | 524 | 1 | 524 | 4.2e-298 | 1032.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023585 | MS.gene96701 | PPI |
| MS.gene074377 | MS.gene023585 | PPI |
| MS.gene25932 | MS.gene023585 | PPI |
| MS.gene023585 | MS.gene43290 | PPI |
| MS.gene033221 | MS.gene023585 | PPI |
| MS.gene044204 | MS.gene023585 | PPI |
| MS.gene25800 | MS.gene023585 | PPI |
| MS.gene71606 | MS.gene023585 | PPI |
| MS.gene60344 | MS.gene023585 | PPI |
| MS.gene56947 | MS.gene023585 | PPI |
| MS.gene023585 | MS.gene91317 | PPI |
| MS.gene70718 | MS.gene023585 | PPI |
| MS.gene86930 | MS.gene023585 | PPI |
| MS.gene70604 | MS.gene023585 | PPI |
| MS.gene022275 | MS.gene023585 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023585.t1 | MTR_8g086520 | 99.427 | 524 | 3 | 0 | 1 | 524 | 1 | 524 | 0.0 | 1059 |
| MS.gene023585.t1 | MTR_2g016460 | 83.397 | 524 | 87 | 0 | 1 | 524 | 1 | 524 | 0.0 | 916 |
| MS.gene023585.t1 | MTR_8g086520 | 99.339 | 454 | 3 | 0 | 1 | 454 | 1 | 454 | 0.0 | 910 |
| MS.gene023585.t1 | MTR_8g086520 | 99.502 | 402 | 2 | 0 | 123 | 524 | 7 | 408 | 0.0 | 813 |
| MS.gene023585.t1 | MTR_8g086520 | 99.005 | 402 | 4 | 0 | 1 | 402 | 1 | 402 | 0.0 | 802 |
| MS.gene023585.t1 | MTR_3g080390 | 72.587 | 518 | 141 | 1 | 8 | 524 | 3 | 520 | 0.0 | 793 |
| MS.gene023585.t1 | MTR_8g063220 | 59.846 | 518 | 206 | 1 | 7 | 522 | 14 | 531 | 0.0 | 645 |
| MS.gene023585.t1 | MTR_3g078270 | 59.653 | 518 | 207 | 1 | 7 | 522 | 13 | 530 | 0.0 | 633 |
| MS.gene023585.t1 | MTR_4g106750 | 59.266 | 518 | 209 | 1 | 7 | 522 | 13 | 530 | 0.0 | 629 |
| MS.gene023585.t1 | MTR_1g021120 | 57.534 | 511 | 217 | 0 | 12 | 522 | 35 | 545 | 0.0 | 607 |
| MS.gene023585.t1 | MTR_5g035180 | 56.298 | 524 | 221 | 4 | 5 | 522 | 15 | 536 | 0.0 | 597 |
| MS.gene023585.t1 | MTR_4g106750 | 59.583 | 480 | 192 | 1 | 45 | 522 | 2 | 481 | 0.0 | 583 |
| MS.gene023585.t1 | MTR_3g103230 | 52.481 | 524 | 238 | 5 | 5 | 522 | 34 | 552 | 0.0 | 576 |
| MS.gene023585.t1 | MTR_1g106085 | 54.356 | 528 | 232 | 4 | 1 | 522 | 1 | 525 | 0.0 | 572 |
| MS.gene023585.t1 | MTR_5g022110 | 52.481 | 524 | 239 | 4 | 5 | 522 | 26 | 545 | 0.0 | 551 |
| MS.gene023585.t1 | MTR_4g106750 | 59.783 | 368 | 146 | 1 | 157 | 522 | 11 | 378 | 2.65e-158 | 456 |
| MS.gene023585.t1 | MTR_8g068550 | 35.727 | 543 | 309 | 6 | 11 | 521 | 221 | 755 | 4.16e-112 | 350 |
| MS.gene023585.t1 | MTR_2g084895 | 36.381 | 536 | 303 | 5 | 20 | 521 | 147 | 678 | 8.33e-111 | 344 |
| MS.gene023585.t1 | MTR_5g032020 | 37.170 | 530 | 297 | 5 | 20 | 517 | 168 | 693 | 1.61e-109 | 342 |
| MS.gene023585.t1 | MTR_2g103510 | 33.461 | 523 | 302 | 6 | 20 | 521 | 94 | 591 | 4.73e-100 | 314 |
| MS.gene023585.t1 | MTR_4g055290 | 34.701 | 536 | 307 | 6 | 20 | 521 | 154 | 680 | 1.31e-99 | 315 |
| MS.gene023585.t1 | MTR_8g086535 | 91.089 | 101 | 9 | 0 | 302 | 402 | 18 | 118 | 7.92e-54 | 177 |
| MS.gene023585.t1 | MTR_5g042660 | 64.286 | 56 | 20 | 0 | 455 | 510 | 39 | 94 | 1.00e-18 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023585.t1 | AT2G34190 | 83.588 | 524 | 86 | 0 | 1 | 524 | 1 | 524 | 0.0 | 926 |
| MS.gene023585.t1 | AT2G05760 | 70.077 | 518 | 154 | 1 | 8 | 524 | 3 | 520 | 0.0 | 764 |
| MS.gene023585.t1 | AT5G62890 | 59.266 | 518 | 209 | 1 | 7 | 522 | 13 | 530 | 0.0 | 628 |
| MS.gene023585.t1 | AT5G62890 | 59.266 | 518 | 209 | 1 | 7 | 522 | 13 | 530 | 0.0 | 628 |
| MS.gene023585.t1 | AT5G62890 | 59.266 | 518 | 209 | 1 | 7 | 522 | 13 | 530 | 0.0 | 628 |
| MS.gene023585.t1 | AT1G60030 | 57.198 | 514 | 218 | 1 | 11 | 522 | 23 | 536 | 0.0 | 621 |
| MS.gene023585.t1 | AT2G26510 | 57.553 | 523 | 221 | 1 | 1 | 522 | 25 | 547 | 0.0 | 612 |
| MS.gene023585.t1 | AT1G10540 | 54.771 | 524 | 231 | 4 | 5 | 522 | 14 | 537 | 0.0 | 590 |
| MS.gene023585.t1 | AT5G49990 | 56.371 | 518 | 224 | 1 | 7 | 522 | 9 | 526 | 0.0 | 586 |
| MS.gene023585.t1 | AT5G49990 | 56.371 | 518 | 224 | 1 | 7 | 522 | 9 | 526 | 0.0 | 586 |
| MS.gene023585.t1 | AT5G49990 | 56.371 | 518 | 224 | 1 | 7 | 522 | 9 | 526 | 0.0 | 586 |
| MS.gene023585.t1 | AT5G49990 | 56.371 | 518 | 224 | 1 | 7 | 522 | 9 | 526 | 0.0 | 586 |
| MS.gene023585.t1 | AT1G49960 | 55.832 | 523 | 228 | 2 | 3 | 522 | 2 | 524 | 0.0 | 577 |
| MS.gene023585.t1 | AT1G65550 | 50.758 | 528 | 248 | 5 | 5 | 522 | 14 | 539 | 0.0 | 552 |
| MS.gene023585.t1 | AT5G62890 | 58.482 | 448 | 186 | 0 | 7 | 454 | 13 | 460 | 0.0 | 535 |
| MS.gene023585.t1 | AT2G26510 | 57.867 | 375 | 158 | 0 | 1 | 375 | 25 | 399 | 1.07e-147 | 430 |
| MS.gene023585.t1 | AT1G10540 | 55.200 | 375 | 164 | 3 | 5 | 375 | 14 | 388 | 2.97e-144 | 421 |
| MS.gene023585.t1 | AT2G26510 | 57.735 | 362 | 153 | 0 | 1 | 362 | 25 | 386 | 6.52e-142 | 416 |
| MS.gene023585.t1 | AT5G25420 | 42.986 | 442 | 171 | 5 | 5 | 439 | 26 | 393 | 6.65e-123 | 367 |
| MS.gene023585.t1 | AT2G27810 | 35.261 | 536 | 310 | 6 | 20 | 521 | 169 | 701 | 1.32e-102 | 324 |
| MS.gene023585.t1 | AT4G38050 | 35.581 | 534 | 308 | 5 | 20 | 521 | 175 | 704 | 2.98e-99 | 315 |
| MS.gene023585.t1 | AT2G27810 | 33.750 | 560 | 310 | 7 | 20 | 521 | 169 | 725 | 2.81e-97 | 310 |
| MS.gene023585.t1 | AT2G27810 | 36.256 | 422 | 250 | 4 | 20 | 423 | 169 | 589 | 2.32e-82 | 268 |
| MS.gene023585.t1 | AT2G27810 | 36.533 | 375 | 219 | 4 | 20 | 376 | 169 | 542 | 8.80e-71 | 236 |
Find 128 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCAGCATACAAATTATTT+TGG | 0.101959 | 4.4:-13614340 | MS.gene023585:CDS |
| TAATTTGTTTCAGGTAAATT+TGG | 0.196029 | 4.4:-13612748 | MS.gene023585:intron |
| TTCATTTCTTGTTCCTTCAA+TGG | 0.226954 | 4.4:-13615704 | MS.gene023585:CDS |
| TTTGATGCTGGCCACTCTTT+TGG | 0.230201 | 4.4:-13613338 | MS.gene023585:CDS |
| GTAATTACATTAGTTGGTTT+TGG | 0.246380 | 4.4:-13614124 | MS.gene023585:CDS |
| GGTGAATGACTTATCTCTTC+TGG | 0.248677 | 4.4:+13615943 | None:intergenic |
| TCATAACAACCACAGTGATA+TGG | 0.275276 | 4.4:-13613608 | MS.gene023585:CDS |
| ATTGATTATTGCTGTGTTCT+TGG | 0.284940 | 4.4:-13612111 | MS.gene023585:CDS |
| ATTTCAGAGAATACACTATC+AGG | 0.289187 | 4.4:-13612459 | MS.gene023585:CDS |
| CCATGGCATTCCTCTATCTT+TGG | 0.292772 | 4.4:+13612061 | None:intergenic |
| TTCACCAATGGATCAACTTC+AGG | 0.304968 | 4.4:-13615926 | MS.gene023585:CDS |
| GGACAATACTCTTGACTATA+AGG | 0.306775 | 4.4:-13612090 | MS.gene023585:CDS |
| AAACCAACTAATGTAATTAC+TGG | 0.315074 | 4.4:+13614127 | None:intergenic |
| AAGAATAGAAGATGGTATTC+AGG | 0.318777 | 4.4:+13612147 | None:intergenic |
| ATGATATTCTTTGCAATGTT+AGG | 0.319292 | 4.4:-13612866 | MS.gene023585:intron |
| CTCCTATCACTGTTGGTAAC+CGG | 0.320169 | 4.4:+13614637 | None:intergenic |
| GTGGGGACTTGTGTTGAAAT+TGG | 0.325063 | 4.4:-13613969 | MS.gene023585:CDS |
| AAATATGGGCTATTTGTTCT+AGG | 0.325670 | 4.4:-13614308 | MS.gene023585:intron |
| TCATTTCTTGTTCCTTCAAT+GGG | 0.346165 | 4.4:-13615703 | MS.gene023585:CDS |
| GTGTATTCTCTGAAATATTC+AGG | 0.350685 | 4.4:+13612466 | None:intergenic |
| ATCTCATTTCTTCCGCTCCT+TGG | 0.363626 | 4.4:-13613500 | MS.gene023585:intron |
| TATAGATTCAAATCCATCTT+GGG | 0.371990 | 4.4:-13615890 | MS.gene023585:CDS |
| CTTGTTTGTAGTGTTCTCTC+AGG | 0.378594 | 4.4:-13613931 | MS.gene023585:intron |
| AAAAGAAGGGTCACGAATAA+TGG | 0.387784 | 4.4:+13614584 | None:intergenic |
| ACAGTGGAGACAATACTTCT+TGG | 0.392031 | 4.4:-13615772 | MS.gene023585:intron |
| TTTGGGATTTAGTCAAATAT+GGG | 0.396617 | 4.4:-13614322 | MS.gene023585:CDS |
| GAGCCGTGGTATCGGTTGGC+AGG | 0.401838 | 4.4:-13613099 | MS.gene023585:CDS |
| GTTCCAGTAATTACATTAGT+TGG | 0.413657 | 4.4:-13614130 | MS.gene023585:CDS |
| TGCCAACACGGTTGCTTCCT+AGG | 0.415342 | 4.4:+13612921 | None:intergenic |
| GGTATCGGTTGGCAGGGAAT+TGG | 0.421613 | 4.4:-13613092 | MS.gene023585:CDS |
| AGGGTTATTCAAGTTTCTGC+TGG | 0.424755 | 4.4:-13612893 | MS.gene023585:CDS |
| TACACTATCAGGGCCTTTCA+TGG | 0.429220 | 4.4:-13612448 | MS.gene023585:CDS |
| TCCCAAAATAATTTGTATGC+TGG | 0.431042 | 4.4:+13614338 | None:intergenic |
| AGAGAGAATGTAGGACTCCT+AGG | 0.436161 | 4.4:-13612938 | MS.gene023585:CDS |
| CATAACAACCACAGTGATAT+GGG | 0.441500 | 4.4:-13613607 | MS.gene023585:CDS |
| TGTTGCAGGATGATAAAGTA+AGG | 0.446203 | 4.4:-13614722 | MS.gene023585:intron |
| GTATAGATTCAAATCCATCT+TGG | 0.446520 | 4.4:-13615891 | MS.gene023585:CDS |
| AGGAGGATCATATGCATTCA+TGG | 0.453580 | 4.4:-13614619 | MS.gene023585:CDS |
| ACATCATTTCCACCCATTGA+AGG | 0.466107 | 4.4:+13615691 | None:intergenic |
| AACATAGTTGTAGGACAGAC+AGG | 0.467914 | 4.4:-13613527 | MS.gene023585:CDS |
| TCACGAATAATGGATACAAT+GGG | 0.468928 | 4.4:+13614594 | None:intergenic |
| TGCTCATACCAAAGCTGGAT+GGG | 0.470991 | 4.4:-13612422 | MS.gene023585:intron |
| TGCAAACACTGTTTGGAACC+CGG | 0.473980 | 4.4:-13614656 | MS.gene023585:CDS |
| AATGATAGATGACCCACAAT+TGG | 0.477393 | 4.4:-13614559 | MS.gene023585:intron |
| TCCTATCACTGTTGGTAACC+GGG | 0.477745 | 4.4:+13614638 | None:intergenic |
| GCCAACCGATACCACGGCTC+AGG | 0.478834 | 4.4:+13613102 | None:intergenic |
| AGAAATGTACTAACCAATTG+TGG | 0.479205 | 4.4:+13614546 | None:intergenic |
| GAATAGACAAGCCTAAGAAA+AGG | 0.479304 | 4.4:+13612488 | None:intergenic |
| GGTCCTGCTCATACCAAAGC+TGG | 0.479360 | 4.4:-13612427 | MS.gene023585:CDS |
| TCACCAATGGATCAACTTCA+GGG | 0.480974 | 4.4:-13615925 | MS.gene023585:CDS |
| GAAACTCACCCATCCAGCTT+TGG | 0.485860 | 4.4:+13612414 | None:intergenic |
| GTACACAGAAACTGTTGAAC+CGG | 0.486278 | 4.4:+13613037 | None:intergenic |
| ACCCGGTTACCAACAGTGAT+AGG | 0.489452 | 4.4:-13614639 | MS.gene023585:CDS |
| ATTGAAGGAACAAGAAATGA+AGG | 0.499359 | 4.4:+13615706 | None:intergenic |
| GCACCCCACTCAAGAGGGTA+TGG | 0.499949 | 4.4:+13613368 | None:intergenic |
| ATGTAACTCAACATAGTTGT+AGG | 0.501947 | 4.4:-13613536 | MS.gene023585:CDS |
| TCATCTATCATTGCAAAAGA+AGG | 0.502196 | 4.4:+13614570 | None:intergenic |
| AAACCCTGAAGTTGATCCAT+TGG | 0.502837 | 4.4:+13615922 | None:intergenic |
| AAGAAGCGGTTGAGATTGAA+AGG | 0.503438 | 4.4:+13611981 | None:intergenic |
| AACCGGTTAGTGTTCCGAAA+AGG | 0.514137 | 4.4:+13613054 | None:intergenic |
| ATGAGGAACCTCTTTATCAC+TGG | 0.516659 | 4.4:-13612517 | MS.gene023585:CDS |
| CATGTCCTGAGCCGTGGTAT+CGG | 0.518412 | 4.4:-13613107 | MS.gene023585:CDS |
| AATAGACAAGCCTAAGAAAA+GGG | 0.522987 | 4.4:+13612489 | None:intergenic |
| TTTCTTGTTCCTTCAATGGG+TGG | 0.525960 | 4.4:-13615700 | MS.gene023585:CDS |
| GCAATAATCAATGCAACAGT+TGG | 0.533111 | 4.4:+13612122 | None:intergenic |
| AAGGACAGTGCCAAAGATAG+AGG | 0.534675 | 4.4:-13612071 | MS.gene023585:CDS |
| TCCTGAGCCGTGGTATCGGT+TGG | 0.538613 | 4.4:-13613103 | MS.gene023585:CDS |
| TATGATCCTCCTATCACTGT+TGG | 0.541705 | 4.4:+13614630 | None:intergenic |
| GGTGCTCCTACATTTGATGC+TGG | 0.543276 | 4.4:-13613350 | MS.gene023585:CDS |
| CCACGGCTCAGGACATGAGC+AGG | 0.543664 | 4.4:+13613113 | None:intergenic |
| CATCCAGCTTTGGTATGAGC+AGG | 0.545272 | 4.4:+13612424 | None:intergenic |
| GAAATGTACTAACCAATTGT+GGG | 0.546919 | 4.4:+13614547 | None:intergenic |
| GAGTGGCCAGCATCAAATGT+AGG | 0.547055 | 4.4:+13613344 | None:intergenic |
| CTGCTCATACCAAAGCTGGA+TGG | 0.547379 | 4.4:-13612423 | MS.gene023585:CDS |
| GTCACGAATAATGGATACAA+TGG | 0.549123 | 4.4:+13614593 | None:intergenic |
| CAGAAACTTGAATAACCCTT+CGG | 0.550365 | 4.4:+13612897 | None:intergenic |
| CTCAGGACATGAGCAGGCGG+TGG | 0.550799 | 4.4:+13613119 | None:intergenic |
| CAACTATGTTGAGTTACATC+CGG | 0.554296 | 4.4:+13613540 | None:intergenic |
| GGGCAACACCAGTGATAAAG+AGG | 0.555822 | 4.4:+13612509 | None:intergenic |
| GACATGAGCAGGCGGTGGTG+TGG | 0.560084 | 4.4:+13613124 | None:intergenic |
| CATGCAAACATACCCCAAGA+TGG | 0.560663 | 4.4:+13615877 | None:intergenic |
| TAACCCTTCGGCTGCCAACA+CGG | 0.560723 | 4.4:+13612909 | None:intergenic |
| ATTTGACAGAGGTTTCCCTA+TGG | 0.567601 | 4.4:-13614098 | MS.gene023585:intron |
| GTTCCTCATTGAATTCATGT+TGG | 0.571510 | 4.4:+13612531 | None:intergenic |
| GCAACCGTGTTGGCAGCCGA+AGG | 0.576172 | 4.4:-13612913 | MS.gene023585:CDS |
| CACTACAAACAAGATTAGCA+TGG | 0.579230 | 4.4:+13613941 | None:intergenic |
| CTCCTAGGAAGCAACCGTGT+TGG | 0.580038 | 4.4:-13612923 | MS.gene023585:CDS |
| TTTCAGAGAATACACTATCA+GGG | 0.580243 | 4.4:-13612458 | MS.gene023585:CDS |
| AGTTGGTGAAGAATAGAAGA+TGG | 0.581474 | 4.4:+13612139 | None:intergenic |
| CCTGCTCATGTCCTGAGCCG+TGG | 0.582782 | 4.4:-13613113 | MS.gene023585:CDS |
| AGCCGTGGTATCGGTTGGCA+GGG | 0.590320 | 4.4:-13613098 | MS.gene023585:CDS |
| GGTATGAGCAGGACCATGAA+AGG | 0.591544 | 4.4:+13612435 | None:intergenic |
| CATCTATCATTGCAAAAGAA+GGG | 0.595562 | 4.4:+13614571 | None:intergenic |
| TTCCCTGCCAACCGATACCA+CGG | 0.595568 | 4.4:+13613096 | None:intergenic |
| AGAGCAAATCTCTCTAGTAT+CGG | 0.602160 | 4.4:+13613633 | None:intergenic |
| CATCTTGACAGAGAGAATGT+AGG | 0.602743 | 4.4:-13612947 | MS.gene023585:intron |
| ACTACAAACAAGATTAGCAT+GGG | 0.605867 | 4.4:+13613942 | None:intergenic |
| CAGCCATCATTCCAAAAGAG+TGG | 0.607490 | 4.4:+13613327 | None:intergenic |
| AGATTCCATACCCTCTTGAG+TGG | 0.607942 | 4.4:-13613373 | MS.gene023585:CDS |
| ATGCTACAATTAGTGCACCT+TGG | 0.608851 | 4.4:+13614361 | None:intergenic |
| TAGGAGCACCCCACTCAAGA+GGG | 0.617390 | 4.4:+13613363 | None:intergenic |
| AGAGATAAGTCATTCACCAA+TGG | 0.619804 | 4.4:-13615938 | MS.gene023585:CDS |
| GCACATCTATTGACAGCGAG+TGG | 0.619907 | 4.4:-13613579 | MS.gene023585:CDS |
| GATTCCATACCCTCTTGAGT+GGG | 0.620879 | 4.4:-13613372 | MS.gene023585:CDS |
| GTAGGAGCACCCCACTCAAG+AGG | 0.622953 | 4.4:+13613362 | None:intergenic |
| AAGATAGAGGAATGCCATGG+TGG | 0.624875 | 4.4:-13612058 | MS.gene023585:CDS |
| TATGTTGAGTTACATCCGGC+CGG | 0.624907 | 4.4:+13613544 | None:intergenic |
| CAACCGTGTTGGCAGCCGAA+GGG | 0.626544 | 4.4:-13612912 | MS.gene023585:CDS |
| AGATAGAGGAATGCCATGGT+GGG | 0.635902 | 4.4:-13612057 | MS.gene023585:CDS |
| GTTGCAGGATGATAAAGTAA+GGG | 0.641584 | 4.4:-13614721 | MS.gene023585:intron |
| TGGAGCATACAAACACCGGC+CGG | 0.643571 | 4.4:-13613559 | MS.gene023585:CDS |
| ATAGATTCAAATCCATCTTG+GGG | 0.643928 | 4.4:-13615889 | MS.gene023585:intron |
| CGGTTACCAACAGTGATAGG+AGG | 0.653551 | 4.4:-13614636 | MS.gene023585:CDS |
| GCAGGATGATAAAGTAAGGG+TGG | 0.654485 | 4.4:-13614718 | MS.gene023585:intron |
| AGCACAATGAGAGCAGTCCA+AGG | 0.659630 | 4.4:-13614378 | MS.gene023585:CDS |
| CGAGTGGAGCATACAAACAC+CGG | 0.663938 | 4.4:-13613563 | MS.gene023585:CDS |
| CGGCTCAGGACATGAGCAGG+CGG | 0.664877 | 4.4:+13613116 | None:intergenic |
| ATTCCATACCCTCTTGAGTG+GGG | 0.671790 | 4.4:-13613371 | MS.gene023585:CDS |
| GTTCTAAACTTAGCCCACCA+TGG | 0.673056 | 4.4:+13612044 | None:intergenic |
| TATTGGTACCAACCAAGGAG+CGG | 0.679674 | 4.4:+13613488 | None:intergenic |
| ATTACTGGAACCATTCCAAG+TGG | 0.685617 | 4.4:+13614142 | None:intergenic |
| CCAAAGATAGAGGAATGCCA+TGG | 0.686802 | 4.4:-13612061 | MS.gene023585:CDS |
| TCACCAACATGAATTCAATG+AGG | 0.689628 | 4.4:-13612534 | MS.gene023585:CDS |
| ACATAGTTGTAGGACAGACA+GGG | 0.696081 | 4.4:-13613526 | MS.gene023585:CDS |
| TCTATGATGGAGGAAAGAAG+CGG | 0.698502 | 4.4:+13611967 | None:intergenic |
| TTACTGGAACCATTCCAAGT+GGG | 0.700944 | 4.4:+13614143 | None:intergenic |
| CACGAATAATGGATACAATG+GGG | 0.733637 | 4.4:+13614595 | None:intergenic |
| TGCATATGCCCATATCACTG+TGG | 0.777461 | 4.4:+13613599 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTAAATATATATTTTTGT+TGG | - | chr4.4:13613897-13613916 | MS.gene023585:intron | 10.0% |
| !!! | TATAATTAATAAATGTGTTT+TGG | + | chr4.4:13612655-13612674 | None:intergenic | 10.0% |
| !! | CTTCACAAATATATAAAATA+AGG | + | chr4.4:13613648-13613667 | None:intergenic | 15.0% |
| !!! | ATATGGTTTTCATTTTTTAT+GGG | - | chr4.4:13614936-13614955 | MS.gene023585:intron | 15.0% |
| !! | CAAAGAAAATATTGAACTAT+TGG | - | chr4.4:13614497-13614516 | MS.gene023585:intron | 20.0% |
| !! | TAGTTAAAAGAATTGAAGTT+AGG | + | chr4.4:13612270-13612289 | None:intergenic | 20.0% |
| !! | TATCATTGGAAAAATTATAC+CGG | - | chr4.4:13614669-13614688 | MS.gene023585:CDS | 20.0% |
| !!! | CATATGGTTTTCATTTTTTA+TGG | - | chr4.4:13614935-13614954 | MS.gene023585:intron | 20.0% |
| !!! | TAATTTGTTTCAGGTAAATT+TGG | - | chr4.4:13615178-13615197 | MS.gene023585:intron | 20.0% |
| !!! | TATTTTCTTTTTATCGTGTT+TGG | - | chr4.4:13613037-13613056 | MS.gene023585:intron | 20.0% |
| !!! | TATTTTTGATAAGATGCAAA+GGG | - | chr4.4:13613004-13613023 | MS.gene023585:intron | 20.0% |
| !!! | TGGTTTTCAACATTATATTT+TGG | - | chr4.4:13612174-13612193 | MS.gene023585:intron | 20.0% |
| !!! | TTATTTTTGATAAGATGCAA+AGG | - | chr4.4:13613003-13613022 | MS.gene023585:intron | 20.0% |
| !!! | TTTAAGTTTAAATTAGCTTG+TGG | - | chr4.4:13614050-13614069 | MS.gene023585:intron | 20.0% |
| !!! | TTTTCTTATTCTCATTCATA+TGG | - | chr4.4:13614919-13614938 | MS.gene023585:intron | 20.0% |
| ! | AAACCAACTAATGTAATTAC+TGG | + | chr4.4:13613802-13613821 | None:intergenic | 25.0% |
| ! | AAATACCCATGACTATTTAT+TGG | - | chr4.4:13612843-13612862 | MS.gene023585:intron | 25.0% |
| ! | AGTATATAGCAGCAAAAATA+GGG | + | chr4.4:13615228-13615247 | None:intergenic | 25.0% |
| ! | ATGATATTCTTTGCAATGTT+AGG | - | chr4.4:13615060-13615079 | MS.gene023585:intron | 25.0% |
| ! | ATTGATCCAAACACAATAAA+AGG | + | chr4.4:13612389-13612408 | None:intergenic | 25.0% |
| ! | CAACACATCATAATACATTA+AGG | + | chr4.4:13614236-13614255 | None:intergenic | 25.0% |
| ! | CTTCATAAAATGACTATCAT+TGG | - | chr4.4:13614655-13614674 | MS.gene023585:CDS | 25.0% |
| ! | TATAGATTCAAATCCATCTT+GGG | - | chr4.4:13612036-13612055 | MS.gene023585:CDS | 25.0% |
| ! | TCTATCCAATAAATAGTCAT+GGG | + | chr4.4:13612851-13612870 | None:intergenic | 25.0% |
| ! | TGAAACAAATTATGAAACAC+AGG | + | chr4.4:13615170-13615189 | None:intergenic | 25.0% |
| ! | TTGATCCAAACACAATAAAA+GGG | + | chr4.4:13612388-13612407 | None:intergenic | 25.0% |
| !! | AGCATCTATTGATAATTGTT+TGG | - | chr4.4:13615303-13615322 | MS.gene023585:intron | 25.0% |
| !! | ATCCAGCATACAAATTATTT+TGG | - | chr4.4:13613586-13613605 | MS.gene023585:CDS | 25.0% |
| !! | TAATTCCCTTTTATTGTGTT+TGG | - | chr4.4:13612380-13612399 | MS.gene023585:intron | 25.0% |
| !! | TCCAGCATACAAATTATTTT+GGG | - | chr4.4:13613587-13613606 | MS.gene023585:CDS | 25.0% |
| !! | TGAATTTTACACTGTTGTTA+AGG | - | chr4.4:13612583-13612602 | MS.gene023585:intron | 25.0% |
| !! | TTTGGGATTTAGTCAAATAT+GGG | - | chr4.4:13613604-13613623 | MS.gene023585:CDS | 25.0% |
| !!! | ATATTTTTTTCAGCTTCTGT+AGG | - | chr4.4:13615352-13615371 | MS.gene023585:intron | 25.0% |
| !!! | ATTTTTTTTGTCTTGTGTAC+TGG | - | chr4.4:13613063-13613082 | MS.gene023585:CDS | 25.0% |
| !!! | CAACATTATATTTTGGCATT+AGG | - | chr4.4:13612181-13612200 | MS.gene023585:intron | 25.0% |
| !!! | CTACTTTGATTTGATTTTGA+TGG | - | chr4.4:13612964-13612983 | MS.gene023585:intron | 25.0% |
| !!! | GTAATTACATTAGTTGGTTT+TGG | - | chr4.4:13613802-13613821 | MS.gene023585:intron | 25.0% |
| !!! | TATTTTTTTCAGCTTCTGTA+GGG | - | chr4.4:13615353-13615372 | MS.gene023585:intron | 25.0% |
| !!! | TGGATCAATGTTTTAACAAT+CGG | - | chr4.4:13612400-13612419 | MS.gene023585:intron | 25.0% |
| !!! | TGTGTTTCATAATTTGTTTC+AGG | - | chr4.4:13615169-13615188 | MS.gene023585:intron | 25.0% |
| !!! | TTATTATTTTGACAGTCAAC+TGG | - | chr4.4:13614747-13614766 | MS.gene023585:intron | 25.0% |
| !!! | TTTGTCTATTGGTTTAATCA+TGG | - | chr4.4:13612511-13612530 | MS.gene023585:CDS | 25.0% |
| !!! | TTTTGGGATTTAGTCAAATA+TGG | - | chr4.4:13613603-13613622 | MS.gene023585:CDS | 25.0% |
| AAAATCTGCATGAAAGGAAA+AGG | + | chr4.4:13613759-13613778 | None:intergenic | 30.0% | |
| AAACCAATAGACAAACTAGT+AGG | + | chr4.4:13612506-13612525 | None:intergenic | 30.0% | |
| AACTGGTTGAATTGGAAATT+GGG | - | chr4.4:13612454-13612473 | MS.gene023585:CDS | 30.0% | |
| AAGAATAGAAGATGGTATTC+AGG | + | chr4.4:13615782-13615801 | None:intergenic | 30.0% | |
| AATAGACAAGCCTAAGAAAA+GGG | + | chr4.4:13615440-13615459 | None:intergenic | 30.0% | |
| ACTACAAACAAGATTAGCAT+GGG | + | chr4.4:13613987-13614006 | None:intergenic | 30.0% | |
| AGAAATGTACTAACCAATTG+TGG | + | chr4.4:13613383-13613402 | None:intergenic | 30.0% | |
| AGATGCTGAAGTAAATTCAA+AGG | + | chr4.4:13615290-13615309 | None:intergenic | 30.0% | |
| AGTTGAATCAGATTGAATAG+TGG | - | chr4.4:13612548-13612567 | MS.gene023585:CDS | 30.0% | |
| ATAGATTCAAATCCATCTTG+GGG | - | chr4.4:13612037-13612056 | MS.gene023585:CDS | 30.0% | |
| ATGTAACTCAACATAGTTGT+AGG | - | chr4.4:13614390-13614409 | MS.gene023585:CDS | 30.0% | |
| ATTGAAGGAACAAGAAATGA+AGG | + | chr4.4:13612223-13612242 | None:intergenic | 30.0% | |
| ATTGATTATTGCTGTGTTCT+TGG | - | chr4.4:13615815-13615834 | MS.gene023585:intron | 30.0% | |
| ATTTCAGAGAATACACTATC+AGG | - | chr4.4:13615467-13615486 | MS.gene023585:intron | 30.0% | |
| CAGTATATAGCAGCAAAAAT+AGG | + | chr4.4:13615229-13615248 | None:intergenic | 30.0% | |
| CATATATTGCTTATTGTTGC+AGG | - | chr4.4:13613190-13613209 | MS.gene023585:intron | 30.0% | |
| CATCTATCATTGCAAAAGAA+GGG | + | chr4.4:13613358-13613377 | None:intergenic | 30.0% | |
| CATGACTATTTATTGGATAG+AGG | - | chr4.4:13612850-13612869 | MS.gene023585:intron | 30.0% | |
| CTCTATCCAATAAATAGTCA+TGG | + | chr4.4:13612852-13612871 | None:intergenic | 30.0% | |
| GAAATGTACTAACCAATTGT+GGG | + | chr4.4:13613382-13613401 | None:intergenic | 30.0% | |
| GACAATGAAAAATACTAGCA+AGG | - | chr4.4:13612779-13612798 | MS.gene023585:intron | 30.0% | |
| GATGCTGAAGTAAATTCAAA+GGG | + | chr4.4:13615289-13615308 | None:intergenic | 30.0% | |
| GTAACAAATTGAACAGAAAG+AGG | + | chr4.4:13614189-13614208 | None:intergenic | 30.0% | |
| GTATAGATTCAAATCCATCT+TGG | - | chr4.4:13612035-13612054 | MS.gene023585:CDS | 30.0% | |
| GTATGTTTAACAGGTTGTAA+CGG | - | chr4.4:13612477-13612496 | MS.gene023585:CDS | 30.0% | |
| GTTCCAGTAATTACATTAGT+TGG | - | chr4.4:13613796-13613815 | MS.gene023585:intron | 30.0% | |
| TATATGTCAAATAACTGGAC+TGG | - | chr4.4:13614018-13614037 | MS.gene023585:intron | 30.0% | |
| TCAGGTATATGTCAAATAAC+TGG | - | chr4.4:13614013-13614032 | MS.gene023585:intron | 30.0% | |
| TCATCTATCATTGCAAAAGA+AGG | + | chr4.4:13613359-13613378 | None:intergenic | 30.0% | |
| TCATTCATTCAAACCTATTC+AGG | + | chr4.4:13614213-13614232 | None:intergenic | 30.0% | |
| TCATTGAACTGCAAAATCAA+AGG | + | chr4.4:13615756-13615775 | None:intergenic | 30.0% | |
| TCATTTCTTGTTCCTTCAAT+GGG | - | chr4.4:13612223-13612242 | MS.gene023585:intron | 30.0% | |
| TGAATATCAATCCTCTATCT+TGG | + | chr4.4:13613172-13613191 | None:intergenic | 30.0% | |
| TTCATTTCTTGTTCCTTCAA+TGG | - | chr4.4:13612222-13612241 | MS.gene023585:intron | 30.0% | |
| TTTCAGAGAATACACTATCA+GGG | - | chr4.4:13615468-13615487 | MS.gene023585:intron | 30.0% | |
| ! | AAATATGGGCTATTTGTTCT+AGG | - | chr4.4:13613618-13613637 | MS.gene023585:CDS | 30.0% |
| ! | GATAATTGTTTGGTCTTCTT+TGG | - | chr4.4:13615313-13615332 | MS.gene023585:intron | 30.0% |
| ! | TAACCTACTAGTTTGTCTAT+TGG | - | chr4.4:13612500-13612519 | MS.gene023585:CDS | 30.0% |
| ! | TCCCAAAATAATTTGTATGC+TGG | + | chr4.4:13613591-13613610 | None:intergenic | 30.0% |
| !! | GCTATATACTGTGTTTTGTT+TGG | - | chr4.4:13615238-13615257 | MS.gene023585:intron | 30.0% |
| !! | GTGTATTCTCTGAAATATTC+AGG | + | chr4.4:13615463-13615482 | None:intergenic | 30.0% |
| !! | GTGTTTTGAATTGTTAACAG+TGG | - | chr4.4:13612138-13612157 | MS.gene023585:CDS | 30.0% |
| !! | TCAATTTGTTACACCTGAAT+AGG | - | chr4.4:13614197-13614216 | MS.gene023585:intron | 30.0% |
| !! | TCACGAATAATGGATACAAT+GGG | + | chr4.4:13613335-13613354 | None:intergenic | 30.0% |
| !! | TTAAATTAGCTTGTGGAATG+TGG | - | chr4.4:13614057-13614076 | MS.gene023585:intron | 30.0% |
| !! | TTGATTTTGATGGATGATAC+TGG | - | chr4.4:13612974-13612993 | MS.gene023585:intron | 30.0% |
| !!! | CAAACTCTACTTTTTGTTGA+AGG | - | chr4.4:13613233-13613252 | MS.gene023585:intron | 30.0% |
| !!! | GTTTTCATTTTTTATGGGAC+AGG | - | chr4.4:13614941-13614960 | MS.gene023585:intron | 30.0% |
| !!! | TGTTTTAGTCTCATTAGTTG+AGG | - | chr4.4:13614623-13614642 | MS.gene023585:CDS | 30.0% |
| AAAAGAAGGGTCACGAATAA+TGG | + | chr4.4:13613345-13613364 | None:intergenic | 35.0% | |
| AATGATAGATGACCCACAAT+TGG | - | chr4.4:13613367-13613386 | MS.gene023585:CDS | 35.0% | |
| ACTGGTTGAATTGGAAATTG+GGG | - | chr4.4:13612455-13612474 | MS.gene023585:CDS | 35.0% | |
| AGAGATAAGTCATTCACCAA+TGG | - | chr4.4:13611988-13612007 | MS.gene023585:CDS | 35.0% | |
| AGAGCAAATCTCTCTAGTAT+CGG | + | chr4.4:13614296-13614315 | None:intergenic | 35.0% | |
| ATAGCAGCAAAAATAGGGAA+TGG | + | chr4.4:13615223-13615242 | None:intergenic | 35.0% | |
| CAACTATGTTGAGTTACATC+CGG | + | chr4.4:13614389-13614408 | None:intergenic | 35.0% | |
| CAACTGGTTGAATTGGAAAT+TGG | - | chr4.4:13612453-13612472 | MS.gene023585:CDS | 35.0% | |
| CACTACAAACAAGATTAGCA+TGG | + | chr4.4:13613988-13614007 | None:intergenic | 35.0% | |
| CAGAAACTTGAATAACCCTT+CGG | + | chr4.4:13615032-13615051 | None:intergenic | 35.0% | |
| CAGTGTTGTACTATACCATA+GGG | + | chr4.4:13613846-13613865 | None:intergenic | 35.0% | |
| CATAACAACCACAGTGATAT+GGG | - | chr4.4:13614319-13614338 | MS.gene023585:CDS | 35.0% | |
| CTCTATGCAAATCTCTACTT+AGG | - | chr4.4:13612347-13612366 | MS.gene023585:intron | 35.0% | |
| GAAATTGGGGTATGTTTAAC+AGG | - | chr4.4:13612468-13612487 | MS.gene023585:CDS | 35.0% | |
| GAATAGACAAGCCTAAGAAA+AGG | + | chr4.4:13615441-13615460 | None:intergenic | 35.0% | |
| GCAATAATCAATGCAACAGT+TGG | + | chr4.4:13615807-13615826 | None:intergenic | 35.0% | |
| GGACAATACTCTTGACTATA+AGG | - | chr4.4:13615836-13615855 | MS.gene023585:intron | 35.0% | |
| GTTCCTCATTGAATTCATGT+TGG | + | chr4.4:13615398-13615417 | None:intergenic | 35.0% | |
| GTTGCAGGATGATAAAGTAA+GGG | - | chr4.4:13613205-13613224 | MS.gene023585:intron | 35.0% | |
| TAGGTGAGTGGCAAATTATA+GGG | - | chr4.4:13615079-13615098 | MS.gene023585:intron | 35.0% | |
| TCACCAACATGAATTCAATG+AGG | - | chr4.4:13615392-13615411 | MS.gene023585:intron | 35.0% | |
| TCAGTGTTGTACTATACCAT+AGG | + | chr4.4:13613847-13613866 | None:intergenic | 35.0% | |
| TCATAACAACCACAGTGATA+TGG | - | chr4.4:13614318-13614337 | MS.gene023585:CDS | 35.0% | |
| TGTTGCAGGATGATAAAGTA+AGG | - | chr4.4:13613204-13613223 | MS.gene023585:intron | 35.0% | |
| TTAGGTGAGTGGCAAATTAT+AGG | - | chr4.4:13615078-13615097 | MS.gene023585:intron | 35.0% | |
| TTCAGTTCAACTGGTTGAAT+TGG | - | chr4.4:13612446-13612465 | MS.gene023585:CDS | 35.0% | |
| TTGTCACATGCTAAATGAAG+TGG | - | chr4.4:13613089-13613108 | MS.gene023585:CDS | 35.0% | |
| ! | ACACTTTTGCAAACACTGTT+TGG | - | chr4.4:13613263-13613282 | MS.gene023585:intron | 35.0% |
| ! | ATTTTGCTGAATGGCCTTTT+CGG | - | chr4.4:13614858-13614877 | MS.gene023585:intron | 35.0% |
| ! | GGAATTGGAATTTTGCTGAA+TGG | - | chr4.4:13614849-13614868 | MS.gene023585:intron | 35.0% |
| !! | AGTTGGTGAAGAATAGAAGA+TGG | + | chr4.4:13615790-13615809 | None:intergenic | 35.0% |
| !! | CACGAATAATGGATACAATG+GGG | + | chr4.4:13613334-13613353 | None:intergenic | 35.0% |
| !! | GTCACGAATAATGGATACAA+TGG | + | chr4.4:13613336-13613355 | None:intergenic | 35.0% |
| !! | GTCTATTGGTTTAATCATGG+TGG | - | chr4.4:13612514-13612533 | MS.gene023585:CDS | 35.0% |
| !!! | GGTTTTGGATTATTTGACAG+AGG | - | chr4.4:13613817-13613836 | MS.gene023585:intron | 35.0% |
| !!! | TGTGTTTTGTTTGGTCTTGT+AGG | - | chr4.4:13615247-13615266 | MS.gene023585:intron | 35.0% |
| AAAGCCTAGAGCAAGAAAGA+AGG | - | chr4.4:13614138-13614157 | MS.gene023585:CDS | 40.0% | |
| AACATAGTTGTAGGACAGAC+AGG | - | chr4.4:13614399-13614418 | MS.gene023585:intron | 40.0% | |
| AAGAAGCGGTTGAGATTGAA+AGG | + | chr4.4:13615948-13615967 | None:intergenic | 40.0% | |
| ACAGTGGAGACAATACTTCT+TGG | - | chr4.4:13612154-13612173 | MS.gene023585:CDS | 40.0% | |
| ACATAGTTGTAGGACAGACA+GGG | - | chr4.4:13614400-13614419 | MS.gene023585:intron | 40.0% | |
| ACATCATTTCCACCCATTGA+AGG | + | chr4.4:13612238-13612257 | None:intergenic | 40.0% | |
| AGGAGGATCATATGCATTCA+TGG | - | chr4.4:13613307-13613326 | MS.gene023585:CDS | 40.0% | |
| ATCATATCTCATCTCGTCTC+AGG | - | chr4.4:13615559-13615578 | MS.gene023585:intron | 40.0% | |
| ATGAGGAACCTCTTTATCAC+TGG | - | chr4.4:13615409-13615428 | MS.gene023585:intron | 40.0% | |
| ATGCTACAATTAGTGCACCT+TGG | + | chr4.4:13613568-13613587 | None:intergenic | 40.0% | |
| ATTACTGGAACCATTCCAAG+TGG | + | chr4.4:13613787-13613806 | None:intergenic | 40.0% | |
| ATTTGACAGAGGTTTCCCTA+TGG | - | chr4.4:13613828-13613847 | MS.gene023585:intron | 40.0% | |
| CACATGCTAAATGAAGTGGT+GGG | - | chr4.4:13613093-13613112 | MS.gene023585:CDS | 40.0% | |
| CATCTTGACAGAGAGAATGT+AGG | - | chr4.4:13614979-13614998 | MS.gene023585:intron | 40.0% | |
| CCTCAAACTTACCAAGATAG+AGG | - | chr4.4:13613158-13613177 | MS.gene023585:CDS | 40.0% | |
| CCTCTATCTTGGTAAGTTTG+AGG | + | chr4.4:13613161-13613180 | None:intergenic | 40.0% | |
| CTTGTTTGTAGTGTTCTCTC+AGG | - | chr4.4:13613995-13614014 | MS.gene023585:intron | 40.0% | |
| GAATACAAGTACAAGTCACG+TGG | + | chr4.4:13613872-13613891 | None:intergenic | 40.0% | |
| GAGATACACAAACATGGAAG+AGG | + | chr4.4:13613516-13613535 | None:intergenic | 40.0% | |
| GGCTGAAAAATCTGCATGAA+AGG | + | chr4.4:13613765-13613784 | None:intergenic | 40.0% | |
| GGTGAATGACTTATCTCTTC+TGG | + | chr4.4:13611986-13612005 | None:intergenic | 40.0% | |
| GTACACAGAAACTGTTGAAC+CGG | + | chr4.4:13614892-13614911 | None:intergenic | 40.0% | |
| TATGATCCTCCTATCACTGT+TGG | + | chr4.4:13613299-13613318 | None:intergenic | 40.0% | |
| TCACATGCTAAATGAAGTGG+TGG | - | chr4.4:13613092-13613111 | MS.gene023585:CDS | 40.0% | |
| TCACCAATGGATCAACTTCA+GGG | - | chr4.4:13612001-13612020 | MS.gene023585:CDS | 40.0% | |
| TCATATCTCATCTCGTCTCA+GGG | - | chr4.4:13615560-13615579 | MS.gene023585:intron | 40.0% | |
| TCATTGTGCTAAGAAACCTC+TGG | + | chr4.4:13613538-13613557 | None:intergenic | 40.0% | |
| TCTCCCAAAAGAGGAAAATC+TGG | - | chr4.4:13613116-13613135 | MS.gene023585:CDS | 40.0% | |
| TCTTTGCAATGTTAGGTGAG+TGG | - | chr4.4:13615067-13615086 | MS.gene023585:intron | 40.0% | |
| TGTGTGTTACGTAAGCATAC+CGG | + | chr4.4:13614691-13614710 | None:intergenic | 40.0% | |
| TTACTGGAACCATTCCAAGT+GGG | + | chr4.4:13613786-13613805 | None:intergenic | 40.0% | |
| TTCACCAATGGATCAACTTC+AGG | - | chr4.4:13612000-13612019 | MS.gene023585:CDS | 40.0% | |
| TTCGACAACAACGATGCTAT+TGG | + | chr4.4:13614458-13614477 | None:intergenic | 40.0% | |
| TTTCTTGTTCCTTCAATGGG+TGG | - | chr4.4:13612226-13612245 | MS.gene023585:intron | 40.0% | |
| ! | AAACCCTGAAGTTGATCCAT+TGG | + | chr4.4:13612007-13612026 | None:intergenic | 40.0% |
| ! | AGGGTTATTCAAGTTTCTGC+TGG | - | chr4.4:13615033-13615052 | MS.gene023585:intron | 40.0% |
| ! | CCACCAGATTTTCCTCTTTT+GGG | + | chr4.4:13613122-13613141 | None:intergenic | 40.0% |
| ! | TCCACCAGATTTTCCTCTTT+TGG | + | chr4.4:13613123-13613142 | None:intergenic | 40.0% |
| !! | ATTTTTCAGCCCACTTGGAA+TGG | - | chr4.4:13613774-13613793 | MS.gene023585:intron | 40.0% |
| !! | CATTGACTCTTGACACATGT+TGG | - | chr4.4:13614520-13614539 | MS.gene023585:intron | 40.0% |
| AACCGGTTAGTGTTCCGAAA+AGG | + | chr4.4:13614875-13614894 | None:intergenic | 45.0% | |
| AAGATAGAGGAATGCCATGG+TGG | - | chr4.4:13615868-13615887 | MS.gene023585:intron | 45.0% | |
| AAGGACAGTGCCAAAGATAG+AGG | - | chr4.4:13615855-13615874 | MS.gene023585:intron | 45.0% | |
| ACCAGTCAGTTCAGTTCAAC+TGG | - | chr4.4:13612437-13612456 | MS.gene023585:CDS | 45.0% | |
| ACCAGTTGAACTGAACTGAC+TGG | + | chr4.4:13612441-13612460 | None:intergenic | 45.0% | |
| AGAGAGAATGTAGGACTCCT+AGG | - | chr4.4:13614988-13615007 | MS.gene023585:intron | 45.0% | |
| AGATAGAGGAATGCCATGGT+GGG | - | chr4.4:13615869-13615888 | MS.gene023585:intron | 45.0% | |
| AGATTCCATACCCTCTTGAG+TGG | - | chr4.4:13614553-13614572 | MS.gene023585:intron | 45.0% | |
| ATCTCATTTCTTCCGCTCCT+TGG | - | chr4.4:13614426-13614445 | MS.gene023585:intron | 45.0% | |
| ATGCTGTTCTGTCCTTTCTC+AGG | - | chr4.4:13613935-13613954 | MS.gene023585:CDS | 45.0% | |
| ATTCCATACCCTCTTGAGTG+GGG | - | chr4.4:13614555-13614574 | MS.gene023585:intron | 45.0% | |
| CAGCCATCATTCCAAAAGAG+TGG | + | chr4.4:13614602-13614621 | None:intergenic | 45.0% | |
| CATATCTCATCTCGTCTCAG+GGG | - | chr4.4:13615561-13615580 | MS.gene023585:intron | 45.0% | |
| CATGCAAACATACCCCAAGA+TGG | + | chr4.4:13612052-13612071 | None:intergenic | 45.0% | |
| CCAAAGATAGAGGAATGCCA+TGG | - | chr4.4:13615865-13615884 | MS.gene023585:intron | 45.0% | |
| CCATGGCATTCCTCTATCTT+TGG | + | chr4.4:13615868-13615887 | None:intergenic | 45.0% | |
| CCATGTTTGTGTATCTCCAG+AGG | - | chr4.4:13613519-13613538 | MS.gene023585:CDS | 45.0% | |
| CCCAAAAGAGGAAAATCTGG+TGG | - | chr4.4:13613119-13613138 | MS.gene023585:CDS | 45.0% | |
| GATGCTATTGGTACCAACCA+AGG | + | chr4.4:13614446-13614465 | None:intergenic | 45.0% | |
| GATTCCATACCCTCTTGAGT+GGG | - | chr4.4:13614554-13614573 | MS.gene023585:intron | 45.0% | |
| GCAGGATGATAAAGTAAGGG+TGG | - | chr4.4:13613208-13613227 | MS.gene023585:intron | 45.0% | |
| GTGGGGACTTGTGTTGAAAT+TGG | - | chr4.4:13613957-13613976 | MS.gene023585:CDS | 45.0% | |
| TACACTATCAGGGCCTTTCA+TGG | - | chr4.4:13615478-13615497 | MS.gene023585:intron | 45.0% | |
| TATGTTGAGTTACATCCGGC+CGG | + | chr4.4:13614385-13614404 | None:intergenic | 45.0% | |
| TATTGGTACCAACCAAGGAG+CGG | + | chr4.4:13614441-13614460 | None:intergenic | 45.0% | |
| TCCTCCTTCTTTCTTGCTCT+AGG | + | chr4.4:13614145-13614164 | None:intergenic | 45.0% | |
| TGCATATGCCCATATCACTG+TGG | + | chr4.4:13614330-13614349 | None:intergenic | 45.0% | |
| TGCTCATACCAAAGCTGGAT+GGG | - | chr4.4:13615504-13615523 | MS.gene023585:intron | 45.0% | |
| TGTTCTGTCCTTTCTCAGGT+GGG | - | chr4.4:13613939-13613958 | MS.gene023585:CDS | 45.0% | |
| ! | CCTCTGGAGATACACAAACA+TGG | + | chr4.4:13613522-13613541 | None:intergenic | 45.0% |
| ! | GTTCTAAACTTAGCCCACCA+TGG | + | chr4.4:13615885-13615904 | None:intergenic | 45.0% |
| ! | TGCAAACACTGTTTGGAACC+CGG | - | chr4.4:13613270-13613289 | MS.gene023585:intron | 45.0% |
| ! | TTTGATGCTGGCCACTCTTT+TGG | - | chr4.4:13614588-13614607 | MS.gene023585:CDS | 45.0% |
| !! | CTCCTATCACTGTTGGTAAC+CGG | + | chr4.4:13613292-13613311 | None:intergenic | 45.0% |
| !! | TCCTATCACTGTTGGTAACC+GGG | + | chr4.4:13613291-13613310 | None:intergenic | 45.0% |
| !! | TGCAGATTTTTCAGCCCACT+TGG | - | chr4.4:13613769-13613788 | MS.gene023585:intron | 45.0% |
| !!! | ACTGGTGTTGCCCTTTTCTT+AGG | - | chr4.4:13615427-13615446 | MS.gene023585:intron | 45.0% |
| !!! | TGGCCACTCTTTTGGAATGA+TGG | - | chr4.4:13614596-13614615 | MS.gene023585:CDS | 45.0% |
| ACCCGGTTACCAACAGTGAT+AGG | - | chr4.4:13613287-13613306 | MS.gene023585:intron | 50.0% | |
| AGCACAATGAGAGCAGTCCA+AGG | - | chr4.4:13613548-13613567 | MS.gene023585:CDS | 50.0% | |
| CATTTCTTCCGCTCCTTGGT+TGG | - | chr4.4:13614430-13614449 | MS.gene023585:intron | 50.0% | |
| CGAGTGGAGCATACAAACAC+CGG | - | chr4.4:13614363-13614382 | MS.gene023585:CDS | 50.0% | |
| CGGTTACCAACAGTGATAGG+AGG | - | chr4.4:13613290-13613309 | MS.gene023585:intron | 50.0% | |
| CTCTTGACACATGTTGGTGC+AGG | - | chr4.4:13614526-13614545 | MS.gene023585:intron | 50.0% | |
| CTGCTCATACCAAAGCTGGA+TGG | - | chr4.4:13615503-13615522 | MS.gene023585:intron | 50.0% | |
| CTGTTCTGTCCTTTCTCAGG+TGG | - | chr4.4:13613938-13613957 | MS.gene023585:CDS | 50.0% | |
| GAAACTCACCCATCCAGCTT+TGG | + | chr4.4:13615515-13615534 | None:intergenic | 50.0% | |
| GAGTGGCCAGCATCAAATGT+AGG | + | chr4.4:13614585-13614604 | None:intergenic | 50.0% | |
| GCACATCTATTGACAGCGAG+TGG | - | chr4.4:13614347-13614366 | MS.gene023585:CDS | 50.0% | |
| GCCTAGAGCAAGAAAGAAGG+AGG | - | chr4.4:13614141-13614160 | MS.gene023585:CDS | 50.0% | |
| GGGCAACACCAGTGATAAAG+AGG | + | chr4.4:13615420-13615439 | None:intergenic | 50.0% | |
| GGTATGAGCAGGACCATGAA+AGG | + | chr4.4:13615494-13615513 | None:intergenic | 50.0% | |
| GGTGCTCCTACATTTGATGC+TGG | - | chr4.4:13614576-13614595 | MS.gene023585:CDS | 50.0% | |
| GTTCTGTCCTTTCTCAGGTG+GGG | - | chr4.4:13613940-13613959 | MS.gene023585:CDS | 50.0% | |
| ! | CATCCAGCTTTGGTATGAGC+AGG | + | chr4.4:13615505-13615524 | None:intergenic | 50.0% |
| ! | GGCCTTTTCGGAACACTAAC+CGG | - | chr4.4:13614870-13614889 | MS.gene023585:intron | 50.0% |
| !! | ACTGACTGGTTCGACTCGTT+CGG | + | chr4.4:13612427-13612446 | None:intergenic | 50.0% |
| CACAAGTCCCCACCTGAGAA+AGG | + | chr4.4:13613950-13613969 | None:intergenic | 55.0% | |
| CATGTCCTGAGCCGTGGTAT+CGG | - | chr4.4:13614819-13614838 | MS.gene023585:intron | 55.0% | |
| CTCCTAGGAAGCAACCGTGT+TGG | - | chr4.4:13615003-13615022 | MS.gene023585:intron | 55.0% | |
| GGTCCTGCTCATACCAAAGC+TGG | - | chr4.4:13615499-13615518 | MS.gene023585:intron | 55.0% | |
| TAACCCTTCGGCTGCCAACA+CGG | + | chr4.4:13615020-13615039 | None:intergenic | 55.0% | |
| TGCCAACACGGTTGCTTCCT+AGG | + | chr4.4:13615008-13615027 | None:intergenic | 55.0% | |
| TGGAGCATACAAACACCGGC+CGG | - | chr4.4:13614367-13614386 | MS.gene023585:CDS | 55.0% | |
| TTCCCTGCCAACCGATACCA+CGG | + | chr4.4:13614833-13614852 | None:intergenic | 55.0% | |
| !! | AGTGGTGGGTCTCCCAAAAG+AGG | - | chr4.4:13613107-13613126 | MS.gene023585:CDS | 55.0% |
| !! | GGTATCGGTTGGCAGGGAAT+TGG | - | chr4.4:13614834-13614853 | MS.gene023585:intron | 55.0% |
| !! | TAGGAGCACCCCACTCAAGA+GGG | + | chr4.4:13614566-13614585 | None:intergenic | 55.0% |
| GCACCCCACTCAAGAGGGTA+TGG | + | chr4.4:13614561-13614580 | None:intergenic | 60.0% | |
| ! | CAACCGTGTTGGCAGCCGAA+GGG | - | chr4.4:13615014-13615033 | MS.gene023585:intron | 60.0% |
| !! | AGCCGTGGTATCGGTTGGCA+GGG | - | chr4.4:13614828-13614847 | MS.gene023585:intron | 60.0% |
| !! | GTAGGAGCACCCCACTCAAG+AGG | + | chr4.4:13614567-13614586 | None:intergenic | 60.0% |
| !! | TCCTGAGCCGTGGTATCGGT+TGG | - | chr4.4:13614823-13614842 | MS.gene023585:intron | 60.0% |
| CCACGGCTCAGGACATGAGC+AGG | + | chr4.4:13614816-13614835 | None:intergenic | 65.0% | |
| CCTGCTCATGTCCTGAGCCG+TGG | - | chr4.4:13614813-13614832 | MS.gene023585:intron | 65.0% | |
| CGGCTCAGGACATGAGCAGG+CGG | + | chr4.4:13614813-13614832 | None:intergenic | 65.0% | |
| CTCAGGACATGAGCAGGCGG+TGG | + | chr4.4:13614810-13614829 | None:intergenic | 65.0% | |
| GACATGAGCAGGCGGTGGTG+TGG | + | chr4.4:13614805-13614824 | None:intergenic | 65.0% | |
| GCCAACCGATACCACGGCTC+AGG | + | chr4.4:13614827-13614846 | None:intergenic | 65.0% | |
| ! | GCAACCGTGTTGGCAGCCGA+AGG | - | chr4.4:13615013-13615032 | MS.gene023585:intron | 65.0% |
| !! | GAGCCGTGGTATCGGTTGGC+AGG | - | chr4.4:13614827-13614846 | MS.gene023585:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 13611968 | 13615980 | 13611968 | ID=MS.gene023585 |
| chr4.4 | mRNA | 13611968 | 13615980 | 13611968 | ID=MS.gene023585.t1;Parent=MS.gene023585 |
| chr4.4 | exon | 13615890 | 13615980 | 13615890 | ID=MS.gene023585.t1.exon1;Parent=MS.gene023585.t1 |
| chr4.4 | CDS | 13615890 | 13615980 | 13615890 | ID=cds.MS.gene023585.t1;Parent=MS.gene023585.t1 |
| chr4.4 | exon | 13615693 | 13615790 | 13615693 | ID=MS.gene023585.t1.exon2;Parent=MS.gene023585.t1 |
| chr4.4 | CDS | 13615693 | 13615790 | 13615693 | ID=cds.MS.gene023585.t1;Parent=MS.gene023585.t1 |
| chr4.4 | exon | 13614560 | 13614736 | 13614560 | ID=MS.gene023585.t1.exon3;Parent=MS.gene023585.t1 |
| chr4.4 | CDS | 13614560 | 13614736 | 13614560 | ID=cds.MS.gene023585.t1;Parent=MS.gene023585.t1 |
| chr4.4 | exon | 13614309 | 13614409 | 13614309 | ID=MS.gene023585.t1.exon4;Parent=MS.gene023585.t1 |
| chr4.4 | CDS | 13614309 | 13614409 | 13614309 | ID=cds.MS.gene023585.t1;Parent=MS.gene023585.t1 |
| chr4.4 | exon | 13614099 | 13614174 | 13614099 | ID=MS.gene023585.t1.exon5;Parent=MS.gene023585.t1 |
| chr4.4 | CDS | 13614099 | 13614174 | 13614099 | ID=cds.MS.gene023585.t1;Parent=MS.gene023585.t1 |
| chr4.4 | exon | 13613932 | 13613991 | 13613932 | ID=MS.gene023585.t1.exon6;Parent=MS.gene023585.t1 |
| chr4.4 | CDS | 13613932 | 13613991 | 13613932 | ID=cds.MS.gene023585.t1;Parent=MS.gene023585.t1 |
| chr4.4 | exon | 13613501 | 13613685 | 13613501 | ID=MS.gene023585.t1.exon7;Parent=MS.gene023585.t1 |
| chr4.4 | CDS | 13613501 | 13613685 | 13613501 | ID=cds.MS.gene023585.t1;Parent=MS.gene023585.t1 |
| chr4.4 | exon | 13613304 | 13613400 | 13613304 | ID=MS.gene023585.t1.exon8;Parent=MS.gene023585.t1 |
| chr4.4 | CDS | 13613304 | 13613400 | 13613304 | ID=cds.MS.gene023585.t1;Parent=MS.gene023585.t1 |
| chr4.4 | exon | 13613041 | 13613186 | 13613041 | ID=MS.gene023585.t1.exon9;Parent=MS.gene023585.t1 |
| chr4.4 | CDS | 13613041 | 13613186 | 13613041 | ID=cds.MS.gene023585.t1;Parent=MS.gene023585.t1 |
| chr4.4 | exon | 13612867 | 13612958 | 13612867 | ID=MS.gene023585.t1.exon10;Parent=MS.gene023585.t1 |
| chr4.4 | CDS | 13612867 | 13612958 | 13612867 | ID=cds.MS.gene023585.t1;Parent=MS.gene023585.t1 |
| chr4.4 | exon | 13612680 | 13612757 | 13612680 | ID=MS.gene023585.t1.exon11;Parent=MS.gene023585.t1 |
| chr4.4 | CDS | 13612680 | 13612757 | 13612680 | ID=cds.MS.gene023585.t1;Parent=MS.gene023585.t1 |
| chr4.4 | exon | 13612423 | 13612583 | 13612423 | ID=MS.gene023585.t1.exon12;Parent=MS.gene023585.t1 |
| chr4.4 | CDS | 13612423 | 13612583 | 13612423 | ID=cds.MS.gene023585.t1;Parent=MS.gene023585.t1 |
| chr4.4 | exon | 13611968 | 13612180 | 13611968 | ID=MS.gene023585.t1.exon13;Parent=MS.gene023585.t1 |
| chr4.4 | CDS | 13611968 | 13612180 | 13611968 | ID=cds.MS.gene023585.t1;Parent=MS.gene023585.t1 |
| Gene Sequence |
| Protein sequence |
