Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023858.t1 | XP_003623909.1 | 96 | 250 | 3 | 1 | 1 | 250 | 1 | 243 | 2.90E-130 | 474.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023858.t1 | Q9LX74 | 68.0 | 250 | 69 | 2 | 1 | 250 | 1 | 239 | 1.3e-94 | 347.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023858.t1 | G7L3K7 | 96.0 | 250 | 3 | 1 | 1 | 250 | 1 | 243 | 2.1e-130 | 474.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023858 | MS.gene023131 | PPI |
| MS.gene85900 | MS.gene023858 | PPI |
| MS.gene023858 | MS.gene032627 | PPI |
| MS.gene023858 | MS.gene028322 | PPI |
| MS.gene023858 | MS.gene53118 | PPI |
| MS.gene023858 | MS.gene78555 | PPI |
| MS.gene023858 | MS.gene82830 | PPI |
| MS.gene023858 | MS.gene55323 | PPI |
| MS.gene023858 | MS.gene36469 | PPI |
| MS.gene023858 | MS.gene35136 | PPI |
| MS.gene023858 | MS.gene072735 | PPI |
| MS.gene023858 | MS.gene053057 | PPI |
| MS.gene023858 | MS.gene024674 | PPI |
| MS.gene023858 | MS.gene21656 | PPI |
| MS.gene023858 | MS.gene22316 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023858.t1 | MTR_7g076910 | 96.000 | 250 | 3 | 1 | 1 | 250 | 1 | 243 | 1.01e-179 | 493 |
| MS.gene023858.t1 | MTR_7g116920 | 29.231 | 195 | 111 | 7 | 5 | 188 | 10 | 188 | 1.06e-16 | 77.0 |
| MS.gene023858.t1 | MTR_4g058720 | 32.544 | 169 | 99 | 4 | 5 | 167 | 33 | 192 | 3.36e-16 | 76.3 |
| MS.gene023858.t1 | MTR_7g116920 | 27.957 | 186 | 107 | 7 | 14 | 188 | 1 | 170 | 1.10e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023858.t1 | AT3G46210 | 68.033 | 244 | 71 | 1 | 1 | 244 | 1 | 237 | 1.62e-127 | 361 |
| MS.gene023858.t1 | AT3G46210 | 68.033 | 244 | 71 | 1 | 1 | 244 | 1 | 237 | 1.62e-127 | 361 |
| MS.gene023858.t1 | AT3G46210 | 68.033 | 244 | 71 | 1 | 1 | 244 | 1 | 237 | 1.62e-127 | 361 |
| MS.gene023858.t1 | AT3G46210 | 68.033 | 244 | 71 | 1 | 1 | 244 | 1 | 237 | 1.62e-127 | 361 |
| MS.gene023858.t1 | AT3G46210 | 68.033 | 244 | 71 | 1 | 1 | 244 | 1 | 237 | 1.62e-127 | 361 |
| MS.gene023858.t1 | AT3G46210 | 68.033 | 244 | 71 | 1 | 1 | 244 | 1 | 237 | 1.62e-127 | 361 |
| MS.gene023858.t1 | AT3G46210 | 68.033 | 244 | 71 | 1 | 1 | 244 | 1 | 237 | 1.62e-127 | 361 |
| MS.gene023858.t1 | AT3G61620 | 30.256 | 195 | 109 | 5 | 5 | 188 | 10 | 188 | 6.39e-21 | 88.6 |
| MS.gene023858.t1 | AT3G61620 | 30.256 | 195 | 109 | 5 | 5 | 188 | 10 | 188 | 6.39e-21 | 88.6 |
| MS.gene023858.t1 | AT2G07110 | 42.857 | 119 | 43 | 4 | 22 | 122 | 8 | 119 | 1.08e-19 | 83.2 |
| MS.gene023858.t1 | AT4G27490 | 31.214 | 173 | 104 | 4 | 1 | 167 | 30 | 193 | 1.02e-15 | 74.7 |
| MS.gene023858.t1 | AT4G27490 | 31.214 | 173 | 104 | 4 | 1 | 167 | 30 | 193 | 1.02e-15 | 74.7 |
| MS.gene023858.t1 | AT4G27490 | 31.214 | 173 | 104 | 4 | 1 | 167 | 30 | 193 | 1.02e-15 | 74.7 |
| MS.gene023858.t1 | AT4G27490 | 31.395 | 172 | 98 | 5 | 1 | 160 | 30 | 193 | 3.17e-14 | 69.7 |
| MS.gene023858.t1 | AT4G27490 | 31.395 | 172 | 98 | 5 | 1 | 160 | 30 | 193 | 3.17e-14 | 69.7 |
| MS.gene023858.t1 | AT4G27490 | 31.395 | 172 | 98 | 5 | 1 | 160 | 30 | 193 | 3.17e-14 | 69.7 |
Find 68 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCATCCATTGAAGTTATT+TGG | 0.147111 | 7.1:-26297695 | MS.gene023858:CDS |
| AACTACCAGCCAAATGTCTT+AGG | 0.238586 | 7.1:+26296978 | None:intergenic |
| TTCTTCTTGGTTCCGGCTTT+AGG | 0.251170 | 7.1:+26297732 | None:intergenic |
| AAAGTTCTGGCTGCAGTTTA+TGG | 0.252618 | 7.1:-26297756 | MS.gene023858:CDS |
| ACGACAGAAACAGTTGTATT+TGG | 0.287215 | 7.1:+26295863 | None:intergenic |
| TTGTGGCTCGTCCTCGTTCT+AGG | 0.303129 | 7.1:+26295539 | None:intergenic |
| AGATAGTAATTCTATTATAT+TGG | 0.304530 | 7.1:-26296852 | MS.gene023858:CDS |
| CAAATGTCTTAGGGGTATTC+CGG | 0.385630 | 7.1:+26296988 | None:intergenic |
| CGCCCATGTGGCTGAGCCAT+GGG | 0.387139 | 7.1:+26297791 | None:intergenic |
| AGCTAGCGGCCTCAGTTGAT+TGG | 0.391159 | 7.1:+26297839 | None:intergenic |
| TGACCAACGTGTCCTGTATT+AGG | 0.391932 | 7.1:+26297669 | None:intergenic |
| GATGCCTCACGAGTAGATTT+CGG | 0.395420 | 7.1:+26295478 | None:intergenic |
| GCGCCCATGTGGCTGAGCCA+TGG | 0.404361 | 7.1:+26297790 | None:intergenic |
| CGGAATACCCCTAAGACATT+TGG | 0.418470 | 7.1:-26296987 | MS.gene023858:CDS |
| AGGCTTCCAAATAACTTCAA+TGG | 0.433202 | 7.1:+26297689 | None:intergenic |
| GTTACACATGGCGCTATGTC+AGG | 0.450735 | 7.1:-26295782 | MS.gene023858:intron |
| CTGAGCCATGGGCTCGGTGG+AGG | 0.456856 | 7.1:+26297802 | None:intergenic |
| GTTATTTGGAAGCCTAATAC+AGG | 0.457823 | 7.1:-26297681 | MS.gene023858:CDS |
| CCCGCCTGTGATGATTTCTC+TGG | 0.462077 | 7.1:+26295839 | None:intergenic |
| TGATTGGGACTCCTTCCATC+AGG | 0.463824 | 7.1:+26297855 | None:intergenic |
| ACTACCAGCCAAATGTCTTA+GGG | 0.470199 | 7.1:+26296979 | None:intergenic |
| GCTAGCGGCCTCAGTTGATT+GGG | 0.478093 | 7.1:+26297840 | None:intergenic |
| GCAAGGAGAAACGAAAGTTC+TGG | 0.479894 | 7.1:-26297769 | MS.gene023858:CDS |
| TGCGCTGCACTTGTGGATGC+CGG | 0.480910 | 7.1:-26297007 | MS.gene023858:CDS |
| ACACGTTGGTCAAGCGGATA+GGG | 0.485898 | 7.1:-26297658 | MS.gene023858:CDS |
| GAGCCCATGGCTCAGCCACA+TGG | 0.489486 | 7.1:-26297794 | MS.gene023858:CDS |
| ATGTGGCTGAGCCATGGGCT+CGG | 0.490093 | 7.1:+26297796 | None:intergenic |
| TGCAGCATGCGCTGCACTTG+TGG | 0.504983 | 7.1:-26297014 | MS.gene023858:CDS |
| CATGCTGCATTTATTGCACA+TGG | 0.506130 | 7.1:+26297028 | None:intergenic |
| TCTGTCCTCCACCGAGCCCA+TGG | 0.508453 | 7.1:-26297807 | MS.gene023858:CDS |
| GGCTCAGCCACATGGGCGCA+AGG | 0.519438 | 7.1:-26297786 | MS.gene023858:CDS |
| ACTTCTGTTATAGTCCAGGC+AGG | 0.520075 | 7.1:-26297567 | MS.gene023858:CDS |
| TTCAGACAACCTTTGAGTTG+TGG | 0.523471 | 7.1:+26295522 | None:intergenic |
| ATAACAGAAGTAGTGGTGTT+GGG | 0.528062 | 7.1:+26297579 | None:intergenic |
| TATAACAGAAGTAGTGGTGT+TGG | 0.529283 | 7.1:+26297578 | None:intergenic |
| CACTACTTCTGTTATAGTCC+AGG | 0.543010 | 7.1:-26297571 | MS.gene023858:CDS |
| ACTCGTGAGGCATCTAAAGC+TGG | 0.545709 | 7.1:-26295469 | MS.gene023858:CDS |
| GGCAATGATCCCATGGCACA+TGG | 0.547079 | 7.1:-26295818 | MS.gene023858:CDS |
| AATGATATTGAAGAAAACCT+TGG | 0.551446 | 7.1:-26297628 | MS.gene023858:CDS |
| GACACGTTGGTCAAGCGGAT+AGG | 0.555141 | 7.1:-26297659 | MS.gene023858:CDS |
| CTACCAGCCAAATGTCTTAG+GGG | 0.562498 | 7.1:+26296980 | None:intergenic |
| GTCCTCGTTCTAGGCAATGA+AGG | 0.565244 | 7.1:+26295548 | None:intergenic |
| ACGAATGCAGATGCTTTCCA+AGG | 0.570974 | 7.1:+26297611 | None:intergenic |
| TACAGGACACGTTGGTCAAG+CGG | 0.571194 | 7.1:-26297664 | MS.gene023858:CDS |
| AGCCCATGGCTCAGCCACAT+GGG | 0.573081 | 7.1:-26297793 | MS.gene023858:CDS |
| CGTTTCTCCTTGCGCCCATG+TGG | 0.574683 | 7.1:+26297779 | None:intergenic |
| ATGGAGATAGACAGACCTGA+TGG | 0.574980 | 7.1:-26297870 | MS.gene023858:CDS |
| GCAGTTTATGGACCTAAAGC+CGG | 0.580294 | 7.1:-26297744 | MS.gene023858:CDS |
| AGGATACAGCACCATCGTCA+TGG | 0.589637 | 7.1:+26297436 | None:intergenic |
| AAGGAAGTGAGAAACCTGCC+TGG | 0.595562 | 7.1:+26297553 | None:intergenic |
| TGGCTGAGCCATGGGCTCGG+TGG | 0.606885 | 7.1:+26297799 | None:intergenic |
| CCAGAGAAATCATCACAGGC+GGG | 0.610323 | 7.1:-26295839 | MS.gene023858:CDS |
| GCCAGAGAAATCATCACAGG+CGG | 0.611420 | 7.1:-26295840 | MS.gene023858:CDS |
| CTGGACTATAACAGAAGTAG+TGG | 0.614747 | 7.1:+26297572 | None:intergenic |
| CGTGCCAGAGAAATCATCAC+AGG | 0.616708 | 7.1:-26295843 | MS.gene023858:CDS |
| ACAGGCGGGCAATGATCCCA+TGG | 0.618979 | 7.1:-26295825 | MS.gene023858:CDS |
| GTGATGATTCCATGTGCCAT+GGG | 0.621550 | 7.1:+26295809 | None:intergenic |
| TGTGATGATTCCATGTGCCA+TGG | 0.630250 | 7.1:+26295808 | None:intergenic |
| ATACCCCTAAGACATTTGGC+TGG | 0.637263 | 7.1:-26296983 | MS.gene023858:intron |
| AGATAGACAGACCTGATGGA+AGG | 0.649068 | 7.1:-26297866 | MS.gene023858:CDS |
| TACCTTCATTGCCTAGAACG+AGG | 0.649903 | 7.1:-26295550 | MS.gene023858:CDS |
| GAGGACGAGCCACAACTCAA+AGG | 0.650203 | 7.1:-26295531 | MS.gene023858:CDS |
| ATCATCACATCTGTTACACA+TGG | 0.653258 | 7.1:-26295794 | MS.gene023858:CDS |
| AGCGCCGAAATCTACTCGTG+AGG | 0.671984 | 7.1:-26295482 | MS.gene023858:CDS |
| ACAGAATGAGAGCAAGCTAG+CGG | 0.683024 | 7.1:+26297825 | None:intergenic |
| GAAGGAGTCCCAATCAACTG+AGG | 0.713387 | 7.1:-26297848 | MS.gene023858:CDS |
| ATGCAGGTTGTCCATGACGA+TGG | 0.713615 | 7.1:-26297447 | MS.gene023858:intron |
| AAGCCTAATACAGGACACGT+TGG | 0.717877 | 7.1:-26297672 | MS.gene023858:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | + | chr7.1:26296541-26296560 | None:intergenic | 0.0% |
| !! | ATATTAGAATTGAATTAAAT+AGG | + | chr7.1:26295922-26295941 | None:intergenic | 10.0% |
| !!! | TTATTTTATAAATATGTTTC+TGG | - | chr7.1:26296244-26296263 | MS.gene023858:intron | 10.0% |
| !! | AGATAGTAATTCTATTATAT+TGG | - | chr7.1:26296483-26296502 | MS.gene023858:intron | 15.0% |
| !! | TTTAAACAAAGTTCATAAAT+TGG | - | chr7.1:26297357-26297376 | MS.gene023858:intron | 15.0% |
| !!! | AAATATTGATGATTTTCAAT+TGG | - | chr7.1:26296073-26296092 | MS.gene023858:intron | 15.0% |
| !!! | AATAAAATATTTTTAACTCC+AGG | + | chr7.1:26295828-26295847 | None:intergenic | 15.0% |
| !! | AATTACTTTAACATCCTTTA+AGG | - | chr7.1:26296920-26296939 | MS.gene023858:intron | 20.0% |
| !! | TGTATTTGGAAAAACTAAAT+AGG | + | chr7.1:26297461-26297480 | None:intergenic | 20.0% |
| !!! | TTTTGCATACTAGAAATATA+TGG | - | chr7.1:26297011-26297030 | MS.gene023858:CDS | 20.0% |
| ! | AATCTTGATTTCTACTAGTT+AGG | - | chr7.1:26296003-26296022 | MS.gene023858:intron | 25.0% |
| ! | AATGATATTGAAGAAAACCT+TGG | - | chr7.1:26295707-26295726 | MS.gene023858:intron | 25.0% |
| ! | AGTTAGAGTTAATGAACTAA+AGG | + | chr7.1:26295804-26295823 | None:intergenic | 25.0% |
| ! | AGTTAGGATATAAATCATTG+TGG | - | chr7.1:26296019-26296038 | MS.gene023858:intron | 25.0% |
| ! | ATAATTTAACCATTATCCAC+AGG | + | chr7.1:26296688-26296707 | None:intergenic | 25.0% |
| ! | ATATTCAATTGCATGTTGTA+TGG | - | chr7.1:26297248-26297267 | MS.gene023858:intron | 25.0% |
| ! | CCACTAAAAGAATATTAAAC+AGG | + | chr7.1:26297760-26297779 | None:intergenic | 25.0% |
| ! | TAACATTTATCGTACATGAA+GGG | + | chr7.1:26296824-26296843 | None:intergenic | 25.0% |
| ! | TAATTTAACCATTATCCACA+GGG | + | chr7.1:26296687-26296706 | None:intergenic | 25.0% |
| ! | TCATGTACACAAATAAACAT+TGG | + | chr7.1:26297137-26297156 | None:intergenic | 25.0% |
| ! | TCTAGTTATTCAACTCAAAT+AGG | + | chr7.1:26297040-26297059 | None:intergenic | 25.0% |
| !! | ATGAACTTTGTTTAAACTAC+TGG | + | chr7.1:26297353-26297372 | None:intergenic | 25.0% |
| !! | CCTGTTTAATATTCTTTTAG+TGG | - | chr7.1:26297757-26297776 | MS.gene023858:CDS | 25.0% |
| !! | TGAACTTTGTTTAAACTACT+GGG | + | chr7.1:26297352-26297371 | None:intergenic | 25.0% |
| !!! | AAACAACTATGCTTTGTTTA+TGG | + | chr7.1:26297317-26297336 | None:intergenic | 25.0% |
| !!! | AACAACTATGCTTTGTTTAT+GGG | + | chr7.1:26297316-26297335 | None:intergenic | 25.0% |
| !!! | ATTGATGATTTTCAATTGGT+TGG | - | chr7.1:26296077-26296096 | MS.gene023858:intron | 25.0% |
| AAGCATCCATTGAAGTTATT+TGG | - | chr7.1:26295640-26295659 | MS.gene023858:intron | 30.0% | |
| CTAGGTTAATCAAACCTTAA+AGG | + | chr7.1:26296937-26296956 | None:intergenic | 30.0% | |
| GTAACATTTATCGTACATGA+AGG | + | chr7.1:26296825-26296844 | None:intergenic | 30.0% | |
| ! | AAAGGTTGTCTGAATTTTTG+AGG | - | chr7.1:26297822-26297841 | MS.gene023858:CDS | 30.0% |
| ! | AGTCTGCATTTTACTTTCTT+AGG | - | chr7.1:26296111-26296130 | MS.gene023858:intron | 30.0% |
| ! | ATTTTCATTCTTCTTGGTTC+CGG | + | chr7.1:26295613-26295632 | None:intergenic | 30.0% |
| ! | CATGAACTATTTCTTAGATC+AGG | + | chr7.1:26297213-26297232 | None:intergenic | 30.0% |
| ! | TTCTGGATTTTCATTCTTCT+TGG | + | chr7.1:26295619-26295638 | None:intergenic | 30.0% |
| !! | ACATTCTGTTTCTAATATGC+AGG | - | chr7.1:26295872-26295891 | MS.gene023858:CDS | 30.0% |
| !! | ACTTGTTGGTTATTGTCTTT+TGG | - | chr7.1:26296383-26296402 | MS.gene023858:intron | 30.0% |
| !! | TCTAATTTTGTTTAGCTGAC+TGG | + | chr7.1:26296627-26296646 | None:intergenic | 30.0% |
| !!! | CTCAGATTGTTATTTTCGTT+TGG | - | chr7.1:26295978-26295997 | MS.gene023858:intron | 30.0% |
| !!! | TTCAGTGCATTTTTGTTTTC+TGG | - | chr7.1:26297416-26297435 | MS.gene023858:intron | 30.0% |
| AAACCTACAGACAGATTCTA+TGG | + | chr7.1:26297699-26297718 | None:intergenic | 35.0% | |
| ACGACAGAAACAGTTGTATT+TGG | + | chr7.1:26297475-26297494 | None:intergenic | 35.0% | |
| ACTAACAAGAAAGACATTGG+GGG | + | chr7.1:26297594-26297613 | None:intergenic | 35.0% | |
| AGGACTAACAAGAAAGACAT+TGG | + | chr7.1:26297597-26297616 | None:intergenic | 35.0% | |
| AGGCTTCCAAATAACTTCAA+TGG | + | chr7.1:26295649-26295668 | None:intergenic | 35.0% | |
| ATAACAGAAGTAGTGGTGTT+GGG | + | chr7.1:26295759-26295778 | None:intergenic | 35.0% | |
| ATCATCACATCTGTTACACA+TGG | - | chr7.1:26297541-26297560 | MS.gene023858:intron | 35.0% | |
| ATTCCATAGAATCTGTCTGT+AGG | - | chr7.1:26297693-26297712 | MS.gene023858:CDS | 35.0% | |
| CATAAACAAGATGGAAGCAA+CGG | + | chr7.1:26296162-26296181 | None:intergenic | 35.0% | |
| CATTACTTGCAACATCAATG+AGG | + | chr7.1:26296865-26296884 | None:intergenic | 35.0% | |
| GAACAGAAACTAAAATCCCA+AGG | + | chr7.1:26296053-26296072 | None:intergenic | 35.0% | |
| GAATTGTGTACAAGCAACAT+AGG | + | chr7.1:26297393-26297412 | None:intergenic | 35.0% | |
| GACTAACAAGAAAGACATTG+GGG | + | chr7.1:26297595-26297614 | None:intergenic | 35.0% | |
| GGAATCAACACTTCTATTGA+AGG | + | chr7.1:26297617-26297636 | None:intergenic | 35.0% | |
| GGACTAACAAGAAAGACATT+GGG | + | chr7.1:26297596-26297615 | None:intergenic | 35.0% | |
| GTTATTTGGAAGCCTAATAC+AGG | - | chr7.1:26295654-26295673 | MS.gene023858:intron | 35.0% | |
| GTTCATTAACTCTAACTTCC+TGG | - | chr7.1:26295807-26295826 | MS.gene023858:CDS | 35.0% | |
| TATAACAGAAGTAGTGGTGT+TGG | + | chr7.1:26295760-26295779 | None:intergenic | 35.0% | |
| TGTACATGAAGCTAGCTAAT+TGG | - | chr7.1:26297148-26297167 | MS.gene023858:intron | 35.0% | |
| TTACTTTCTTAGGACTGTGA+AGG | - | chr7.1:26296121-26296140 | MS.gene023858:intron | 35.0% | |
| TTGCATGTTGTATGGTTTAG+TGG | - | chr7.1:26297256-26297275 | MS.gene023858:intron | 35.0% | |
| TTTAGATACCCTGTGGATAA+TGG | - | chr7.1:26296676-26296695 | MS.gene023858:intron | 35.0% | |
| TTTGTTTATCACTAGAGCAG+TGG | - | chr7.1:26296205-26296224 | MS.gene023858:intron | 35.0% | |
| !!! | ACCTCTTCTTCTTTTTTGGA+AGG | + | chr7.1:26296511-26296530 | None:intergenic | 35.0% |
| !!! | ACGAACCTCTTCTTCTTTTT+TGG | + | chr7.1:26296515-26296534 | None:intergenic | 35.0% |
| !!! | ACTTCAATGGATGCTTTTTC+TGG | + | chr7.1:26295636-26295655 | None:intergenic | 35.0% |
| !!! | ATTAACCTAGCTGCTTTTAC+TGG | - | chr7.1:26296947-26296966 | MS.gene023858:intron | 35.0% |
| !!! | CCTCTTCTTCTTTTTTGGAA+GGG | + | chr7.1:26296510-26296529 | None:intergenic | 35.0% |
| AACTACCAGCCAAATGTCTT+AGG | + | chr7.1:26296360-26296379 | None:intergenic | 40.0% | |
| ACTACCAGCCAAATGTCTTA+GGG | + | chr7.1:26296359-26296378 | None:intergenic | 40.0% | |
| ACTAGAGCGCATAAACAAGA+TGG | + | chr7.1:26296171-26296190 | None:intergenic | 40.0% | |
| CACTACTTCTGTTATAGTCC+AGG | - | chr7.1:26295764-26295783 | MS.gene023858:intron | 40.0% | |
| CATGCTGCATTTATTGCACA+TGG | + | chr7.1:26296310-26296329 | None:intergenic | 40.0% | |
| CCCTTCCAAAAAAGAAGAAG+AGG | - | chr7.1:26296507-26296526 | MS.gene023858:intron | 40.0% | |
| CTGGACTATAACAGAAGTAG+TGG | + | chr7.1:26295766-26295785 | None:intergenic | 40.0% | |
| GGACTGTGAAGGAACAAAAT+AGG | - | chr7.1:26296132-26296151 | MS.gene023858:intron | 40.0% | |
| GTACAAGCAACATAGGATCA+AGG | + | chr7.1:26297386-26297405 | None:intergenic | 40.0% | |
| TGACTGGATTCACTAGACAA+CGG | + | chr7.1:26296611-26296630 | None:intergenic | 40.0% | |
| ! | AAAGTTCTGGCTGCAGTTTA+TGG | - | chr7.1:26295579-26295598 | MS.gene023858:intron | 40.0% |
| ! | CTGTGAAAAACAGAAGCATG+CGG | + | chr7.1:26297647-26297666 | None:intergenic | 40.0% |
| ! | GTTTTCCAGTAAAAGCAGCT+AGG | + | chr7.1:26296955-26296974 | None:intergenic | 40.0% |
| ! | GTTTTTACTGTAAGTCTCCC+AGG | - | chr7.1:26297063-26297082 | MS.gene023858:intron | 40.0% |
| !! | CAAATGTCTTAGGGGTATTC+CGG | + | chr7.1:26296350-26296369 | None:intergenic | 40.0% |
| !! | TTCAGACAACCTTTGAGTTG+TGG | + | chr7.1:26297816-26297835 | None:intergenic | 40.0% |
| AAGCCTAATACAGGACACGT+TGG | - | chr7.1:26295663-26295682 | MS.gene023858:intron | 45.0% | |
| ACAGAATGAGAGCAAGCTAG+CGG | + | chr7.1:26295513-26295532 | None:intergenic | 45.0% | |
| ACGAATGCAGATGCTTTCCA+AGG | + | chr7.1:26295727-26295746 | None:intergenic | 45.0% | |
| ACTTCTGTTATAGTCCAGGC+AGG | - | chr7.1:26295768-26295787 | MS.gene023858:intron | 45.0% | |
| AGATAGACAGACCTGATGGA+AGG | - | chr7.1:26295469-26295488 | MS.gene023858:CDS | 45.0% | |
| ATACCCCTAAGACATTTGGC+TGG | - | chr7.1:26296352-26296371 | MS.gene023858:intron | 45.0% | |
| ATGGAGATAGACAGACCTGA+TGG | - | chr7.1:26295465-26295484 | MS.gene023858:CDS | 45.0% | |
| CATTGTGGCATGTGTTCCTT+GGG | - | chr7.1:26296034-26296053 | MS.gene023858:intron | 45.0% | |
| CGGAATACCCCTAAGACATT+TGG | - | chr7.1:26296348-26296367 | MS.gene023858:intron | 45.0% | |
| CTACCAGCCAAATGTCTTAG+GGG | + | chr7.1:26296358-26296377 | None:intergenic | 45.0% | |
| GAAGCTAGCTAATTGGAGTC+TGG | - | chr7.1:26297155-26297174 | MS.gene023858:intron | 45.0% | |
| GACTGGATTCACTAGACAAC+GGG | + | chr7.1:26296610-26296629 | None:intergenic | 45.0% | |
| GATGCCTCACGAGTAGATTT+CGG | + | chr7.1:26297860-26297879 | None:intergenic | 45.0% | |
| GCAAGGAGAAACGAAAGTTC+TGG | - | chr7.1:26295566-26295585 | MS.gene023858:intron | 45.0% | |
| GCAGTTTATGGACCTAAAGC+CGG | - | chr7.1:26295591-26295610 | MS.gene023858:intron | 45.0% | |
| GGCTGGTAGTTGAAACTTGT+TGG | - | chr7.1:26296369-26296388 | MS.gene023858:intron | 45.0% | |
| GTGATGATTCCATGTGCCAT+GGG | + | chr7.1:26297529-26297548 | None:intergenic | 45.0% | |
| TACCTTCATTGCCTAGAACG+AGG | - | chr7.1:26297785-26297804 | MS.gene023858:CDS | 45.0% | |
| TCATTGTGGCATGTGTTCCT+TGG | - | chr7.1:26296033-26296052 | MS.gene023858:intron | 45.0% | |
| TGACCAACGTGTCCTGTATT+AGG | + | chr7.1:26295669-26295688 | None:intergenic | 45.0% | |
| TGTGATGATTCCATGTGCCA+TGG | + | chr7.1:26297530-26297549 | None:intergenic | 45.0% | |
| TTCTTCTTGGTTCCGGCTTT+AGG | + | chr7.1:26295606-26295625 | None:intergenic | 45.0% | |
| ! | CGAAGCATTTAGATACCCTG+TGG | - | chr7.1:26296669-26296688 | MS.gene023858:intron | 45.0% |
| !! | TATAAAATAATAATATCTTT+AGG | + | chr7.1:26296234-26296253 | None:intergenic | 5.0% |
| AAGGAAGTGAGAAACCTGCC+TGG | + | chr7.1:26295785-26295804 | None:intergenic | 50.0% | |
| ACACGTTGGTCAAGCGGATA+GGG | - | chr7.1:26295677-26295696 | MS.gene023858:intron | 50.0% | |
| AGGATACAGCACCATCGTCA+TGG | + | chr7.1:26295902-26295921 | None:intergenic | 50.0% | |
| ATGCAGGTTGTCCATGACGA+TGG | - | chr7.1:26295888-26295907 | MS.gene023858:CDS | 50.0% | |
| CCAGAGAAATCATCACAGGC+GGG | - | chr7.1:26297496-26297515 | MS.gene023858:intron | 50.0% | |
| CGTGCCAGAGAAATCATCAC+AGG | - | chr7.1:26297492-26297511 | MS.gene023858:intron | 50.0% | |
| GAAGGAGTCCCAATCAACTG+AGG | - | chr7.1:26295487-26295506 | MS.gene023858:CDS | 50.0% | |
| GCCAGAGAAATCATCACAGG+CGG | - | chr7.1:26297495-26297514 | MS.gene023858:intron | 50.0% | |
| GTTACACATGGCGCTATGTC+AGG | - | chr7.1:26297553-26297572 | MS.gene023858:CDS | 50.0% | |
| TACAGGACACGTTGGTCAAG+CGG | - | chr7.1:26295671-26295690 | MS.gene023858:intron | 50.0% | |
| TGATTGGGACTCCTTCCATC+AGG | + | chr7.1:26295483-26295502 | None:intergenic | 50.0% | |
| ! | ACAGAAGCATGCGGAACACT+TGG | + | chr7.1:26297638-26297657 | None:intergenic | 50.0% |
| ! | ACTCGTGAGGCATCTAAAGC+TGG | - | chr7.1:26297866-26297885 | MS.gene023858:CDS | 50.0% |
| ! | GTACAAGTATCGCAGACAGC+AGG | + | chr7.1:26297091-26297110 | None:intergenic | 50.0% |
| ! | GTCCTCGTTCTAGGCAATGA+AGG | + | chr7.1:26297790-26297809 | None:intergenic | 50.0% |
| AGCTAGCGGCCTCAGTTGAT+TGG | + | chr7.1:26295499-26295518 | None:intergenic | 55.0% | |
| ATCGCAGACAGCAGGATCCT+GGG | + | chr7.1:26297083-26297102 | None:intergenic | 55.0% | |
| CCCGCCTGTGATGATTTCTC+TGG | + | chr7.1:26297499-26297518 | None:intergenic | 55.0% | |
| GACACGTTGGTCAAGCGGAT+AGG | - | chr7.1:26295676-26295695 | MS.gene023858:intron | 55.0% | |
| GAGGACGAGCCACAACTCAA+AGG | - | chr7.1:26297804-26297823 | MS.gene023858:CDS | 55.0% | |
| GCTAGCGGCCTCAGTTGATT+GGG | + | chr7.1:26295498-26295517 | None:intergenic | 55.0% | |
| GGCAATGATCCCATGGCACA+TGG | - | chr7.1:26297517-26297536 | MS.gene023858:intron | 55.0% | |
| TATCGCAGACAGCAGGATCC+TGG | + | chr7.1:26297084-26297103 | None:intergenic | 55.0% | |
| TTGTGGCTCGTCCTCGTTCT+AGG | + | chr7.1:26297799-26297818 | None:intergenic | 55.0% | |
| ! | AGCGCCGAAATCTACTCGTG+AGG | - | chr7.1:26297853-26297872 | MS.gene023858:CDS | 55.0% |
| ACAGGCGGGCAATGATCCCA+TGG | - | chr7.1:26297510-26297529 | MS.gene023858:intron | 60.0% | |
| AGCCCATGGCTCAGCCACAT+GGG | - | chr7.1:26295542-26295561 | MS.gene023858:CDS | 60.0% | |
| ATGTGGCTGAGCCATGGGCT+CGG | + | chr7.1:26295542-26295561 | None:intergenic | 60.0% | |
| CGTTTCTCCTTGCGCCCATG+TGG | + | chr7.1:26295559-26295578 | None:intergenic | 60.0% | |
| TGCAGCATGCGCTGCACTTG+TGG | - | chr7.1:26296321-26296340 | MS.gene023858:intron | 60.0% | |
| TGCGCTGCACTTGTGGATGC+CGG | - | chr7.1:26296328-26296347 | MS.gene023858:intron | 60.0% | |
| CGCCCATGTGGCTGAGCCAT+GGG | + | chr7.1:26295547-26295566 | None:intergenic | 65.0% | |
| GAGCCCATGGCTCAGCCACA+TGG | - | chr7.1:26295541-26295560 | MS.gene023858:CDS | 65.0% | |
| TCTGTCCTCCACCGAGCCCA+TGG | - | chr7.1:26295528-26295547 | MS.gene023858:CDS | 65.0% | |
| GCGCCCATGTGGCTGAGCCA+TGG | + | chr7.1:26295548-26295567 | None:intergenic | 70.0% | |
| GGCTCAGCCACATGGGCGCA+AGG | - | chr7.1:26295549-26295568 | MS.gene023858:CDS | 70.0% | |
| TGGCTGAGCCATGGGCTCGG+TGG | + | chr7.1:26295539-26295558 | None:intergenic | 70.0% | |
| !! | CTGAGCCATGGGCTCGGTGG+AGG | + | chr7.1:26295536-26295555 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 26295465 | 26297892 | 26295465 | ID=MS.gene023858 |
| chr7.1 | mRNA | 26295465 | 26297892 | 26295465 | ID=MS.gene023858.t1;Parent=MS.gene023858 |
| chr7.1 | exon | 26297551 | 26297892 | 26297551 | ID=MS.gene023858.t1.exon1;Parent=MS.gene023858.t1 |
| chr7.1 | CDS | 26297551 | 26297892 | 26297551 | ID=cds.MS.gene023858.t1;Parent=MS.gene023858.t1 |
| chr7.1 | exon | 26297443 | 26297463 | 26297443 | ID=MS.gene023858.t1.exon2;Parent=MS.gene023858.t1 |
| chr7.1 | CDS | 26297443 | 26297463 | 26297443 | ID=cds.MS.gene023858.t1;Parent=MS.gene023858.t1 |
| chr7.1 | exon | 26296984 | 26297056 | 26296984 | ID=MS.gene023858.t1.exon3;Parent=MS.gene023858.t1 |
| chr7.1 | CDS | 26296984 | 26297056 | 26296984 | ID=cds.MS.gene023858.t1;Parent=MS.gene023858.t1 |
| chr7.1 | exon | 26296829 | 26296896 | 26296829 | ID=MS.gene023858.t1.exon4;Parent=MS.gene023858.t1 |
| chr7.1 | CDS | 26296829 | 26296896 | 26296829 | ID=cds.MS.gene023858.t1;Parent=MS.gene023858.t1 |
| chr7.1 | exon | 26295783 | 26295915 | 26295783 | ID=MS.gene023858.t1.exon5;Parent=MS.gene023858.t1 |
| chr7.1 | CDS | 26295783 | 26295915 | 26295783 | ID=cds.MS.gene023858.t1;Parent=MS.gene023858.t1 |
| chr7.1 | exon | 26295465 | 26295580 | 26295465 | ID=MS.gene023858.t1.exon6;Parent=MS.gene023858.t1 |
| chr7.1 | CDS | 26295465 | 26295580 | 26295465 | ID=cds.MS.gene023858.t1;Parent=MS.gene023858.t1 |
| Gene Sequence |
| Protein sequence |
