AlfalfaGEDB | MS.gene02797

M. sativa cultivar XinJiangDaYe / MS.gene02797

KEGG: K05765
GO: GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005856 GO:0007015 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0015629 GO:0016043 GO:0022411 GO:0030042 GO:0032984 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043624 GO:0043933 GO:0051261 GO:0071840 GO:0097435 GO:0110165
PFAM: PF00241.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02797.t1	XP_003594440.1	97.8	139	3	0	1	139	1	139	2.90E-71	277.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02797.t1	Q9FVI1	84.8	138	21	0	1	138	1	138	5.0e-64	245.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02797.t1	G7IFU0	97.8	139	3	0	1	139	1	139	2.1e-71	277.7

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene02797	MS.gene97005	PPI
MS.gene02797	MS.gene020366	PPI
MS.gene02797	MS.gene23488	PPI
MS.gene02797	MS.gene47853	PPI
MS.gene02797	MS.gene34500	PPI
MS.gene037983	MS.gene02797	PPI
MS.gene003535	MS.gene02797	PPI
MS.gene02797	MS.gene037982	PPI
MS.gene037980	MS.gene02797	PPI
MS.gene02797	MS.gene27898	PPI
MS.gene87667	MS.gene02797	PPI
MS.gene02797	MS.gene037990	PPI
MS.gene02797	MS.gene24057	PPI
MS.gene057694	MS.gene02797	PPI
MS.gene003218	MS.gene02797	PPI
MS.gene018706	MS.gene02797	PPI
MS.gene023659	MS.gene02797	PPI
MS.gene02797	MS.gene058991	PPI
MS.gene02797	MS.gene063026	PPI
MS.gene02797	MS.gene037986	PPI
MS.gene41437	MS.gene02797	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02797.t1	MTR_2g028670	97.842	139	3	0	1	139	1	139	4.51e-101	285
MS.gene02797.t1	MTR_8g088210	87.050	139	18	0	1	139	1	139	4.30e-92	263
MS.gene02797.t1	MTR_8g088210	86.364	132	18	0	8	139	1	132	2.89e-86	248
MS.gene02797.t1	MTR_1g068950	80.576	139	27	0	1	139	1	139	2.84e-85	245
MS.gene02797.t1	MTR_8g098470	71.739	138	37	1	1	138	1	136	1.24e-75	221
MS.gene02797.t1	MTR_5g010430	69.343	137	40	1	2	138	4	138	1.33e-70	208
MS.gene02797.t1	MTR_1g101190	70.073	137	39	1	2	138	463	597	8.66e-66	210
MS.gene02797.t1	MTR_7g096890	59.854	137	55	0	3	139	10	146	6.76e-65	194
MS.gene02797.t1	MTR_4g073590	54.815	135	61	0	4	138	8	142	3.10e-55	170
MS.gene02797.t1	MTR_1g076170	55.797	138	61	0	2	139	10	147	3.50e-52	162
MS.gene02797.t1	MTR_4g073590	54.023	87	40	0	4	90	8	94	4.84e-33	112

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02797.t1	AT5G59880	81.295	139	26	0	1	139	1	139	1.41e-87	251
MS.gene02797.t1	AT3G46010	81.295	139	26	0	1	139	1	139	3.73e-87	250
MS.gene02797.t1	AT3G46010	81.159	138	26	0	2	139	13	150	1.60e-86	249
MS.gene02797.t1	AT5G59890	81.295	139	26	0	1	139	1	139	5.87e-85	244
MS.gene02797.t1	AT3G46000	78.417	139	28	1	1	139	1	137	2.11e-79	231
MS.gene02797.t1	AT5G59890	80.303	132	26	0	8	139	1	132	2.56e-79	230
MS.gene02797.t1	AT5G59890	80.303	132	26	0	8	139	1	132	2.56e-79	230
MS.gene02797.t1	AT3G46000	77.698	139	29	1	1	139	20	156	1.72e-78	229
MS.gene02797.t1	AT4G00680	69.065	139	43	0	1	139	1	139	3.78e-74	218
MS.gene02797.t1	AT1G01750	69.784	139	42	0	1	139	1	139	5.92e-74	217
MS.gene02797.t1	AT3G46000	77.273	132	28	1	8	139	1	130	9.60e-74	216
MS.gene02797.t1	AT5G59880	71.942	139	24	1	1	139	1	124	2.78e-73	214
MS.gene02797.t1	AT4G00680	68.841	138	43	0	2	139	12	149	4.51e-73	215
MS.gene02797.t1	AT1G01750	69.565	138	42	0	2	139	7	144	4.81e-73	215
MS.gene02797.t1	AT4G25590	68.841	138	41	1	1	138	1	136	2.94e-72	213
MS.gene02797.t1	AT5G52360	69.565	138	40	1	1	138	1	136	3.66e-72	212
MS.gene02797.t1	AT4G25590	67.176	131	41	1	8	138	1	129	1.38e-66	198
MS.gene02797.t1	AT2G31200	54.745	137	62	0	3	139	10	146	2.93e-58	177
MS.gene02797.t1	AT4G34970	52.899	138	65	0	1	138	3	140	1.11e-54	168
MS.gene02797.t1	AT2G16700	50.370	135	67	0	4	138	8	142	1.69e-51	160
MS.gene02797.t1	AT2G16700	50.382	131	65	0	8	138	1	131	1.58e-49	155
MS.gene02797.t1	AT2G16700	50.382	131	65	0	8	138	1	131	1.58e-49	155
MS.gene02797.t1	AT3G45990	56.522	138	49	3	8	139	1	133	6.42e-48	151
MS.gene02797.t1	AT2G16700	50.575	87	43	0	4	90	8	94	4.05e-30	105

Find 0 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TAATTTAAATTAAAAAAAAA+AGG	+	15007:25947-25966	None:intergenic	0.0%
!!	ATAAAGAGTAAATTAATACA+TGG	+	15007:26606-26625	None:intergenic	15.0%
!!	CAAATTAATCGTATAATAAT+TGG	-	15007:26151-26170	MS.gene02797:CDS	15.0%
!!!	TTTTTGTAGTAGTTAATTAT+TGG	-	15007:26315-26334	MS.gene02797:CDS	15.0%
!!	ATAATAATTGGATGATTTAG+TGG	-	15007:26163-26182	MS.gene02797:CDS	20.0%
!!	TTATCTGTATGAATTGAATT+TGG	-	15007:26770-26789	MS.gene02797:intron	20.0%
!!!	AAAAGCAGAATTTTTTTCAT+TGG	-	15007:27391-27410	MS.gene02797:intron	20.0%
!!!	AAAGCAGAATTTTTTTCATT+GGG	-	15007:27392-27411	MS.gene02797:intron	20.0%
!!!	AATGAAAAAAATTCTGCTTT+TGG	+	15007:27392-27411	None:intergenic	20.0%
!!!	ATGAAAAAAATTCTGCTTTT+GGG	+	15007:27391-27410	None:intergenic	20.0%
!!!	CAATGTGATACAAAATTTTT+AGG	-	15007:26736-26755	MS.gene02797:intron	20.0%
!!!	CTAAAAATTTTGTATCACAT+TGG	+	15007:26738-26757	None:intergenic	20.0%
!!!	TTTGAAGTAAGAAATGTAAA+TGG	-	15007:26916-26935	MS.gene02797:intron	20.0%
!	AAAAAAAAAGGCAAAATTCG+CGG	+	15007:25935-25954	None:intergenic	25.0%
!	ATGAATTGAATTTGGTATGT+AGG	-	15007:26778-26797	MS.gene02797:intron	25.0%
!	TAGGAAATCATGTGAAAATA+AGG	-	15007:26875-26894	MS.gene02797:intron	25.0%
!	TATACAAATCTTCGAATAGA+AGG	+	15007:26712-26731	None:intergenic	25.0%
!	TCTGTAGAAACTTGAAAAAT+AGG	-	15007:26856-26875	MS.gene02797:intron	25.0%
!!	TTGTCTATATTCCATTGATT+TGG	-	15007:26507-26526	MS.gene02797:intron	25.0%
!!!	TGAAAAAAATTCTGCTTTTG+GGG	+	15007:27390-27409	None:intergenic	25.0%
	AGACGCATCTAAACATAAAT+TGG	-	15007:26441-26460	MS.gene02797:intron	30.0%
	CAAAATCATAGACAGCATAA+CGG	+	15007:27345-27364	None:intergenic	30.0%
	GAAATCATGTGAAAATAAGG+TGG	-	15007:26878-26897	MS.gene02797:intron	30.0%
	TGACTGCAAGTTAAAGTTTA+TGG	-	15007:27183-27202	MS.gene02797:intron	30.0%
!	GTCGATTTCATTGTTTGAAT+TGG	-	15007:26120-26139	MS.gene02797:CDS	30.0%
!!	AATGTTTGCTTTTCGATACA+TGG	-	15007:27419-27438	MS.gene02797:intron	30.0%
!!	CTATATTCCATTGATTTGGA+CGG	-	15007:26511-26530	MS.gene02797:intron	30.0%
!!	GGTGTCAATTTTTCAATCAA+AGG	+	15007:26691-26710	None:intergenic	30.0%
	AACCGTTCAATTCTTACACA+TGG	-	15007:25899-25918	MS.gene02797:CDS	35.0%
	ACATCAAGATCCATTTCAGT+AGG	+	15007:27612-27631	None:intergenic	35.0%
	AGATAGGAAGTAAACAACCA+AGG	+	15007:27455-27474	None:intergenic	35.0%
	AGATCATGAAAATTCCAGCT+CGG	+	15007:26030-26049	None:intergenic	35.0%
	AGCCATGTGTAAGAATTGAA+CGG	+	15007:25904-25923	None:intergenic	35.0%
	AGGATAACTCACTTTGTTAG+CGG	-	15007:26549-26568	MS.gene02797:intron	35.0%
	CAAGTTTCTACAGACCAAAA+GGG	+	15007:26850-26869	None:intergenic	35.0%
	CCAACAGAATTAATGCAGAT+AGG	+	15007:27471-27490	None:intergenic	35.0%
	CCTATCTGCATTAATTCTGT+TGG	-	15007:27468-27487	MS.gene02797:intron	35.0%
	CGATCTTATACACTATGAAC+CGG	+	15007:27231-27250	None:intergenic	35.0%
	GTTAAAGTTTATGGAGCTCA+AGG	-	15007:27192-27211	MS.gene02797:intron	35.0%
	GTTCATAGTGTATAAGATCG+AGG	-	15007:27231-27250	MS.gene02797:intron	35.0%
	GTTTCTAACTGCAATTCTAC+AGG	-	15007:27129-27148	MS.gene02797:intron	35.0%
	TCAAGTTTCTACAGACCAAA+AGG	+	15007:26851-26870	None:intergenic	35.0%
	TGGAATTCAAATAGAGTTGC+AGG	-	15007:27578-27597	MS.gene02797:intron	35.0%
	TTTATGCAAGCACCAAAGAA+AGG	-	15007:27538-27557	MS.gene02797:intron	35.0%
!	AAATTTTCATAGCCTTCAGC+TGG	+	15007:27295-27314	None:intergenic	35.0%
!	TACATGGCTATAGTTTTCCT+TGG	-	15007:27435-27454	MS.gene02797:intron	35.0%
!!	ACTTTAACTTGCAGTCATCA+TGG	+	15007:27180-27199	None:intergenic	35.0%
!!	ATTTTGTTTGGGTAAGCTTG+TGG	-	15007:26281-26300	MS.gene02797:CDS	35.0%
!!!	GCAGAATTTTTTTCATTGGG+TGG	-	15007:27395-27414	MS.gene02797:intron	35.0%
	CAAAAAGAGCTGAAATCGAG+AGG	+	15007:25991-26010	None:intergenic	40.0%
	CAAGTCATTGTGGAAAAGCT+TGG	-	15007:27265-27284	MS.gene02797:intron	40.0%
	CACCAAAGAAAGGTTCAAGA+GGG	-	15007:27548-27567	MS.gene02797:intron	40.0%
	CATAGTACCGTCCAAATCAA+TGG	+	15007:26521-26540	None:intergenic	40.0%
	CTTGTGAATTGTGATCTGTG+TGG	-	15007:26210-26229	MS.gene02797:CDS	40.0%
	GAAACAGAAGCAAGTCATTG+TGG	-	15007:27255-27274	MS.gene02797:intron	40.0%
	GACGGTACTATGCTTGTATA+AGG	-	15007:26529-26548	MS.gene02797:intron	40.0%
	GGATAACTCACTTTGTTAGC+GGG	-	15007:26550-26569	MS.gene02797:intron	40.0%
	TTATGGAGCTCAAGGCAAAA+AGG	-	15007:27200-27219	MS.gene02797:intron	40.0%
!!	ATTCTGTTGGCTTTGTGTGT+AGG	-	15007:27481-27500	MS.gene02797:intron	40.0%
	CTCCCTCTTGAACCTTTCTT+TGG	+	15007:27553-27572	None:intergenic	45.0%
	GACTATAGTACAATCCGAGC+TGG	-	15007:26013-26032	MS.gene02797:intron	45.0%
	GCACCAAAGAAAGGTTCAAG+AGG	-	15007:27547-27566	MS.gene02797:intron	45.0%
	GGCAACTGATCCTACTGAAA+TGG	-	15007:27599-27618	MS.gene02797:intron	45.0%
	TCAAGGCAAAAAGGACACAC+CGG	-	15007:27209-27228	MS.gene02797:intron	45.0%
	TCATGTGATTGCTGATCTGC+TGG	-	15007:27077-27096	MS.gene02797:intron	45.0%
	TCTACAGACCAAAAGGGTCT+AGG	+	15007:26844-26863	None:intergenic	45.0%
!	CTTCTCACTCTTGCTGTATC+AGG	+	15007:27510-27529	None:intergenic	45.0%
!!!	TTATTTTTATTATTTTGTTT+GGG	-	15007:26270-26289	MS.gene02797:CDS	5.0%
!!!	TTTATTTTTATTATTTTGTT+TGG	-	15007:26269-26288	MS.gene02797:CDS	5.0%
	AGAAAGGTTCAAGAGGGAGC+TGG	-	15007:27554-27573	MS.gene02797:intron	50.0%
	CTACAGGCAAATGCAGCATC+TGG	-	15007:27145-27164	MS.gene02797:intron	50.0%
	GGCAAATGCAGCATCTGGTA+TGG	-	15007:27150-27169	MS.gene02797:intron	50.0%
	AACGGCACTCATCAGCAGGA+AGG	+	15007:27327-27346	None:intergenic	55.0%
	AGGGTCTAGGCGCAAGTCAT+TGG	+	15007:26831-26850	None:intergenic	55.0%
	AGGTTCAAGAGGGAGCTGGA+TGG	-	15007:27558-27577	MS.gene02797:intron	55.0%
	GCATAACGGCACTCATCAGC+AGG	+	15007:27331-27350	None:intergenic	55.0%
!	AAGCTTGGTGAGCCAGCTGA+AGG	-	15007:27280-27299	MS.gene02797:intron	55.0%
!	GACTTGCGCCTAGACCCTTT+TGG	-	15007:26833-26852	MS.gene02797:intron	55.0%

Chromosome	Type	Strat	End	Strand	Name
15007	gene	25871	27653	25871	ID=MS.gene02797
15007	mRNA	25871	27653	25871	ID=MS.gene02797.t1;Parent=MS.gene02797
15007	exon	27651	27653	27651	ID=MS.gene02797.t1.exon1;Parent=MS.gene02797.t1
15007	CDS	27651	27653	27651	ID=cds.MS.gene02797.t1;Parent=MS.gene02797.t1
15007	exon	26108	26373	26108	ID=MS.gene02797.t1.exon2;Parent=MS.gene02797.t1
15007	CDS	26108	26373	26108	ID=cds.MS.gene02797.t1;Parent=MS.gene02797.t1
15007	exon	25871	26021	25871	ID=MS.gene02797.t1.exon3;Parent=MS.gene02797.t1
15007	CDS	25871	26021	25871	ID=cds.MS.gene02797.t1;Parent=MS.gene02797.t1

Gene Sequence

>MS.gene02797

ATGGTTCGTTTTCTCTATCTTCTTCTTTAACCGTTCAATTCTTACACATGGCTAACAATTTCCGCGAATTTTGCCTTTTTTTTTTAATTTAAATTATCATATATGATTGAATTTAGTCCTCTCGATTTCAGCTCTTTTTGTTGACTATAGTACAATCCGAGCTGGAATTTTCATGATCTGATCTTTTCATTTCAGCTGCATTTTTTTTTTCGTTGCAAATCTCACTTCATTCTCAGATCTGATCTCGTTGTCGATTTCATTGTTTGAATTGGATTATTATCAAATTAATCGTATAATAATTGGATGATTTAGTGGATTGTTAATTTATTATTACAATAGCTTGTGAATTGTGATCTGTGTGGACATATTATCTGATTTCTGTGAATTTTATTTATTTATTTATTTTTATTATTTTGTTTGGGTAAGCTTGTGGATTCAATTTATTTTTTGTAGTAGTTAATTATTGGTGCAATTTTTAATTAGAGAATATTCTTTTTAATAGATTTATTTTGTCTTTTATTAGATTTTTGTAAATAAACTGAGATATTCTATATATTTTTAGCTTGAAGAAGACGCATCTAAACATAAATTGGCTTTTTGTTGTTCTTTACTTAATTTTGCACTAATCACTTGTATTTGTCTATATTCCATTGATTTGGACGGTACTATGCTTGTATAAGGATAACTCACTTTGTTAGCGGGCTACGTATTGCTATAACATTTTATCGTTCACCATGTATTAATTTACTCTTTATTTTTCAGCTTCTTAAAGATCAGCTATTATGAATTGTTTTGTTTGAGAAAGAGTTTGTCTTTGCCTTTGATTGAAAAATTGACACCTTCTATTCGAAGATTTGTATATTTCCAATGTGATACAAAATTTTTAGGATCTTGTTTTTTTATCTGTATGAATTGAATTTGGTATGTAGGTTTTACAACACTCACACACAATAAGCACCAATGACTTGCGCCTAGACCCTTTTGGTCTGTAGAAACTTGAAAAATAGGAAATCATGTGAAAATAAGGTGGTATTTTTGTAATAAATTTGAAGTAAGAAATGTAAATGGTTAGCAACTAAAAACTTCTCATCTGATTCAGACTTTTAGTCTTTCTTTCAGATCATGTCATGAACTGTCTTTTTCTTTGTTTTTCTCTTTTGTTGAGTAACAAGTTAAATGACGAAGTTTACTTATTTGTGTACAATCTCATGTGATTGCTGATCTGCTGGTGCATGACATTGATGATTGATTATGATGTGTTTCTAACTGCAATTCTACAGGCAAATGCAGCATCTGGTATGGCAGTCCATGATGACTGCAAGTTAAAGTTTATGGAGCTCAAGGCAAAAAGGACACACCGGTTCATAGTGTATAAGATCGAGGAGAAACAGAAGCAAGTCATTGTGGAAAAGCTTGGTGAGCCAGCTGAAGGCTATGAAAATTTCACTGCATGCCTTCCTGCTGATGAGTGCCGTTATGCTGTCTATGATTTTGAGTATCTGACAGAAGAGAATGTCCCCAAAAGCAGAATTTTTTTCATTGGGTGGTAATGTTTGCTTTTCGATACATGGCTATAGTTTTCCTTGGTTGTTTACTTCCTATCTGCATTAATTCTGTTGGCTTTGTGTGTAGGTCGCCTGATACAGCAAGAGTGAGAAGCAAGATGATTTATGCAAGCACCAAAGAAAGGTTCAAGAGGGAGCTGGATGGAATTCAAATAGAGTTGCAGGCAACTGATCCTACTGAAATGGATCTTGATGTGTTCAAAAGCCGTGCCAACTAA

Protein sequence

>MS.gene02797.t1

MANAASGMAVHDDCKLKFMELKAKRTHRFIVYKIEEKQKQVIVEKLGEPAEGYENFTACLPADECRYAVYDFEYLTEENVPKSRIFFIGWSPDTARVRSKMIYASTKERFKRELDGIQIELQATDPTEMDLDVFKSRAN