AlfalfaGEDB | MS.gene037982

M. sativa cultivar XinJiangDaYe / MS.gene037982

KEGG: K05765
GO: GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005856 GO:0007015 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0015629 GO:0016043 GO:0022411 GO:0030042 GO:0032984 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043624 GO:0043933 GO:0051261 GO:0071840 GO:0097435 GO:0110165
PFAM: PF00241.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene037982.t1	XP_013468343.1	97.8	136	3	0	34	169	2	137	3.30E-69	271.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene037982.t1	Q9ZSK3	81.6	136	25	0	34	169	2	137	1.7e-61	236.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene037982.t1	G7ZZK8	97.8	136	3	0	34	169	2	137	2.4e-69	271.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene037983	MS.gene037982	PPI
MS.gene037982	MS.gene23488	PPI
MS.gene037986	MS.gene037982	PPI
MS.gene037982	MS.gene34500	PPI
MS.gene058991	MS.gene037982	PPI
MS.gene003535	MS.gene037982	PPI
MS.gene037982	MS.gene27898	PPI
MS.gene47853	MS.gene037982	PPI
MS.gene02797	MS.gene037982	PPI
MS.gene037980	MS.gene037982	PPI
MS.gene063026	MS.gene037982	PPI
MS.gene87667	MS.gene037982	PPI
MS.gene24057	MS.gene037982	PPI
MS.gene037990	MS.gene037982	PPI
MS.gene057694	MS.gene037982	PPI
MS.gene41437	MS.gene037982	PPI
MS.gene037982	MS.gene058991	PPI
MS.gene003218	MS.gene037982	PPI
MS.gene018706	MS.gene037982	PPI
MS.gene023659	MS.gene037982	PPI
MS.gene037982	MS.gene037986	PPI
MS.gene037982	MS.gene97005	PPI
MS.gene037982	MS.gene020366	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene037982.t1	MTR_1g068950	97.794	136	3	0	34	169	2	137	5.80e-96	274
MS.gene037982.t1	MTR_2g028670	78.676	136	29	0	34	169	2	137	4.24e-80	234
MS.gene037982.t1	MTR_8g088210	77.206	136	31	0	34	169	2	137	1.49e-77	227
MS.gene037982.t1	MTR_5g010430	74.820	139	33	1	31	169	1	137	1.44e-76	225
MS.gene037982.t1	MTR_8g098470	72.059	136	36	1	34	169	2	135	2.43e-73	216
MS.gene037982.t1	MTR_8g088210	76.154	130	31	0	40	169	1	130	1.27e-72	214
MS.gene037982.t1	MTR_1g101190	72.464	138	36	1	32	169	461	596	1.28e-67	216
MS.gene037982.t1	MTR_7g096890	60.432	139	55	0	31	169	6	144	7.43e-65	195
MS.gene037982.t1	MTR_1g076170	61.765	136	52	0	34	169	10	145	5.17e-58	178
MS.gene037982.t1	MTR_4g073590	60.448	134	53	0	36	169	8	141	7.12e-58	177
MS.gene037982.t1	MTR_4g073590	60.920	87	34	0	36	122	8	94	1.94e-35	119

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene037982.t1	AT3G46010	82.353	136	24	0	34	169	13	148	8.37e-83	241
MS.gene037982.t1	AT5G59890	81.618	136	25	0	34	169	2	137	9.48e-83	240
MS.gene037982.t1	AT3G46010	82.353	136	24	0	34	169	2	137	1.75e-82	240
MS.gene037982.t1	AT5G59890	80.769	130	25	0	40	169	1	130	7.33e-78	228
MS.gene037982.t1	AT5G59890	80.769	130	25	0	40	169	1	130	7.33e-78	228
MS.gene037982.t1	AT4G00680	73.239	142	37	1	28	169	7	147	2.09e-77	227
MS.gene037982.t1	AT1G01750	72.535	142	39	0	28	169	1	142	2.48e-77	227
MS.gene037982.t1	AT5G59880	75.000	136	34	0	34	169	2	137	1.14e-76	225
MS.gene037982.t1	AT4G00680	74.265	136	35	0	34	169	2	137	1.71e-76	224
MS.gene037982.t1	AT1G01750	74.265	136	35	0	34	169	2	137	1.58e-75	222
MS.gene037982.t1	AT3G46000	77.206	136	29	1	34	169	2	135	3.67e-75	221
MS.gene037982.t1	AT3G46000	77.206	136	29	1	34	169	21	154	5.65e-75	221
MS.gene037982.t1	AT4G25590	75.735	136	31	1	34	169	2	135	6.27e-74	218
MS.gene037982.t1	AT5G52360	75.735	136	31	1	34	169	2	135	8.40e-72	213
MS.gene037982.t1	AT3G46000	76.154	130	29	1	40	169	1	128	2.32e-70	209
MS.gene037982.t1	AT4G25590	74.615	130	31	1	40	169	1	128	5.22e-69	205
MS.gene037982.t1	AT5G59880	63.971	136	34	1	34	169	2	122	1.36e-61	186
MS.gene037982.t1	AT2G31200	58.273	139	58	0	31	169	6	144	1.49e-60	184
MS.gene037982.t1	AT2G16700	54.478	134	61	0	36	169	8	141	5.97e-54	168
MS.gene037982.t1	AT4G34970	54.074	135	62	0	35	169	5	139	8.12e-54	167
MS.gene037982.t1	AT2G16700	54.615	130	59	0	40	169	1	130	9.44e-52	162
MS.gene037982.t1	AT2G16700	54.615	130	59	0	40	169	1	130	9.44e-52	162
MS.gene037982.t1	AT3G45990	51.471	136	55	3	40	169	1	131	8.37e-42	137
MS.gene037982.t1	AT2G16700	49.020	102	52	0	36	137	8	109	1.66e-32	112

Find 0 sgRNAs with CRISPR-Local

Find 40 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTAAAATCAATCATAAAAAA+TGG	-	50851:20790-20809	MS.gene037982:intergenic	10.0%
!!	GTATATCATTTACAAGATTA+AGG	+	50851:20546-20565	MS.gene037982:CDS	20.0%
!	AAGCAACAAAATGATATACT+CGG	-	50851:20814-20833	MS.gene037982:intergenic	25.0%
!	CAACAGTTAACTTATAGATT+TGG	+	50851:20759-20778	MS.gene037982:intron	25.0%
!!	TGAATGCAAGTTAAAGTTTT+TGG	+	50851:20498-20517	MS.gene037982:CDS	25.0%
!!	TGATGTTTGTGAAATTTTAC+AGG	+	50851:20444-20463	MS.gene037982:CDS	25.0%
!!!	ATTTTGTTGCTTTTGTTTGA+AGG	+	50851:20822-20841	MS.gene037982:intron	25.0%
	AGCAACAAAATGATATACTC+GGG	-	50851:20813-20832	MS.gene037981:intergenic	30.0%
	CTTGTAAATGATATACCGAT+AGG	-	50851:20542-20561	MS.gene037982:intergenic	30.0%
!!	TGAAGAAAATTCTGCTTTTC+TGG	-	50851:20705-20724	MS.gene037982:intergenic	30.0%
!!!	TGATTTTGATTTTGTCACTG+AGG	+	50851:20672-20691	MS.gene037982:CDS	30.0%
	AAATCATCGTAACCATTTGC+AGG	-	50851:20610-20629	MS.gene037981:intergenic	35.0%
	ACATCAGATGCATCAACAAA+AGG	-	50851:20430-20449	MS.gene037981:intergenic	35.0%
	CTCCAAAGATAGGTTCAAAA+GGG	+	50851:20889-20908	MS.gene037982:CDS	35.0%
	GTTGTTAGTATGCTTGTTTG+TGG	+	50851:20378-20397	MS.gene037982:CDS	35.0%
	TCCTTACCCTTGAAATATCA+GGG	-	50851:20850-20869	MS.gene037982:intergenic	35.0%
	TTTATGCTAGCTCCAAAGAT+AGG	+	50851:20879-20898	MS.gene037982:CDS	35.0%
!	GCAGAATTTTCTTCATAGCT+TGG	+	50851:20710-20729	MS.gene037982:CDS	35.0%
!!!	GCTTGGTAATGTCAACTTTT+TGG	+	50851:20727-20746	MS.gene037982:intron	35.0%
!!!	GTTAAAGTTTTTGGAGCTCA+AGG	+	50851:20507-20526	MS.gene037982:CDS	35.0%
	ACATCAAGATCCATCTCAGT+AGG	-	50851:20953-20972	MS.gene037981:intergenic	40.0%
	CTCCTTACCCTTGAAATATC+AGG	-	50851:20851-20870	MS.gene037982:intergenic	40.0%
	GCTCCAAAGATAGGTTCAAA+AGG	+	50851:20888-20907	MS.gene037982:CDS	40.0%
!	AAGGTGCCCTGATATTTCAA+GGG	+	50851:20841-20860	MS.gene037982:intron	40.0%
!	CAAGTTGTTGTTGACAAGGT+TGG	+	50851:20580-20599	MS.gene037982:CDS	40.0%
!	CTCCCTTTTGAACCTATCTT+TGG	-	50851:20894-20913	MS.gene037982:intergenic	40.0%
!	GAAGCAAGTTGTTGTTGACA+AGG	+	50851:20576-20595	MS.gene037982:CDS	40.0%
	AACAGCATATCGACACTCGT+CGG	-	50851:20650-20669	MS.gene037981:intergenic	45.0%
	AGCTACTGATCCTACTGAGA+TGG	+	50851:20940-20959	MS.gene037982:CDS	45.0%
	AGGTTCAAAAGGGAGCTTGA+TGG	+	50851:20899-20918	MS.gene037982:CDS	45.0%
	GCCCTGATATTTCAAGGGTA+AGG	+	50851:20846-20865	MS.gene037982:CDS	45.0%
	GGTTCAAAAGGGAGCTTGAT+GGG	+	50851:20900-20919	MS.gene037982:CDS	45.0%
!	TGTGGCGTTGAAAGTGTGTA+TGG	+	50851:20396-20415	MS.gene037982:CDS	45.0%
!!	AAGGTTGGTGATCCTGCAAA+TGG	+	50851:20595-20614	MS.gene037982:CDS	45.0%
!!	GAAGGTGCCCTGATATTTCA+AGG	+	50851:20840-20859	MS.gene037982:intron	45.0%
	TCAAGGCGAAGAGGACCTAT+CGG	+	50851:20524-20543	MS.gene037982:CDS	50.0%
	TTACAGGCGAATGCAGCATC+AGG	+	50851:20460-20479	MS.gene037982:CDS	50.0%
!!!	TTTTGGAGCTCAAGGCGAAG+AGG	+	50851:20515-20534	MS.gene037982:CDS	50.0%
	GGCGAATGCAGCATCAGGTA+TGG	+	50851:20465-20484	MS.gene037982:CDS	55.0%
	GCATATCGACACTCGTCGGC+AGG	-	50851:20646-20665	MS.gene037982:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
50851	gene	20367	20985	20367	ID=MS.gene037982
50851	mRNA	20367	20985	20367	ID=MS.gene037982.t1;Parent=MS.gene037982
50851	exon	20367	20731	20367	ID=MS.gene037982.t1.exon1;Parent=MS.gene037982.t1
50851	CDS	20367	20731	20367	ID=cds.MS.gene037982.t1;Parent=MS.gene037982.t1
50851	exon	20844	20985	20844	ID=MS.gene037982.t1.exon2;Parent=MS.gene037982.t1
50851	CDS	20844	20985	20844	ID=cds.MS.gene037982.t1;Parent=MS.gene037982.t1

Gene Sequence

>MS.gene037982

ATGGTAATGGGGTTGTTAGTATGCTTGTTTGTGGCGTTGAAAGTGTGTATGGAGAAATTTCCTTTTGTTGATGCATCTGATGTTTGTGAAATTTTACAGGCGAATGCAGCATCAGGTATGGATGTGAATGATGAATGCAAGTTAAAGTTTTTGGAGCTCAAGGCGAAGAGGACCTATCGGTATATCATTTACAAGATTAAGGTGAAGCAGAAGCAAGTTGTTGTTGACAAGGTTGGTGATCCTGCAAATGGTTACGATGATTTCACTGCTAATCTTCCTGCCGACGAGTGTCGATATGCTGTTTATGATTTTGATTTTGTCACTGAGGAGAATTGCCAGAAAAGCAGAATTTTCTTCATAGCTTGGTAATGTCAACTTTTTGGATCTTAAAGCAACAGTTAACTTATAGATTTGGATATTCCATTTTTTATGATTGATTTTAACCCGAGTATATCATTTTGTTGCTTTTGTTTGAAGGTGCCCTGATATTTCAAGGGTAAGGAGCAAGATGATTTATGCTAGCTCCAAAGATAGGTTCAAAAGGGAGCTTGATGGGATTCAAGTTGAGTTGCAAGCTACTGATCCTACTGAGATGGATCTTGATGTGTTCAAAAGCCGT

Protein sequence

>MS.gene037982.t1

MVMGLLVCLFVALKVCMEKFPFVDASDVCEILQANAASGMDVNDECKLKFLELKAKRTYRYIIYKIKVKQKQVVVDKVGDPANGYDDFTANLPADECRYAVYDFDFVTEENCQKSRIFFIAWCPDISRVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFKSR