Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47853.t1 | XP_003629907.1 | 97.8 | 139 | 3 | 0 | 1 | 139 | 1 | 139 | 2.90E-71 | 277.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47853.t1 | Q9FVI1 | 84.8 | 138 | 21 | 0 | 1 | 138 | 1 | 138 | 1.9e-63 | 243.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47853.t1 | G7L826 | 97.8 | 139 | 3 | 0 | 1 | 139 | 1 | 139 | 2.1e-71 | 277.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47853 | MS.gene97005 | PPI |
| MS.gene003535 | MS.gene47853 | PPI |
| MS.gene02797 | MS.gene47853 | PPI |
| MS.gene47853 | MS.gene27898 | PPI |
| MS.gene037980 | MS.gene47853 | PPI |
| MS.gene87667 | MS.gene47853 | PPI |
| MS.gene47853 | MS.gene037982 | PPI |
| MS.gene47853 | MS.gene037990 | PPI |
| MS.gene24057 | MS.gene47853 | PPI |
| MS.gene47853 | MS.gene24057 | PPI |
| MS.gene057694 | MS.gene47853 | PPI |
| MS.gene41437 | MS.gene47853 | PPI |
| MS.gene003218 | MS.gene47853 | PPI |
| MS.gene018706 | MS.gene47853 | PPI |
| MS.gene023659 | MS.gene47853 | PPI |
| MS.gene037990 | MS.gene47853 | PPI |
| MS.gene47853 | MS.gene020366 | PPI |
| MS.gene47853 | MS.gene058991 | PPI |
| MS.gene037983 | MS.gene47853 | PPI |
| MS.gene47853 | MS.gene23488 | PPI |
| MS.gene47853 | MS.gene063026 | PPI |
| MS.gene47853 | MS.gene037986 | PPI |
| MS.gene47853 | MS.gene34500 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47853.t1 | MTR_8g088210 | 97.842 | 139 | 3 | 0 | 1 | 139 | 1 | 139 | 3.14e-101 | 286 |
| MS.gene47853.t1 | MTR_8g088210 | 97.727 | 132 | 3 | 0 | 8 | 139 | 1 | 132 | 1.30e-95 | 271 |
| MS.gene47853.t1 | MTR_2g028670 | 88.489 | 139 | 16 | 0 | 1 | 139 | 1 | 139 | 7.75e-94 | 267 |
| MS.gene47853.t1 | MTR_1g068950 | 79.137 | 139 | 29 | 0 | 1 | 139 | 1 | 139 | 3.22e-82 | 238 |
| MS.gene47853.t1 | MTR_8g098470 | 72.464 | 138 | 36 | 1 | 1 | 138 | 1 | 136 | 5.24e-75 | 219 |
| MS.gene47853.t1 | MTR_5g010430 | 68.613 | 137 | 41 | 1 | 2 | 138 | 4 | 138 | 2.74e-69 | 205 |
| MS.gene47853.t1 | MTR_1g101190 | 69.343 | 137 | 40 | 1 | 2 | 138 | 463 | 597 | 7.02e-65 | 207 |
| MS.gene47853.t1 | MTR_7g096890 | 59.124 | 137 | 56 | 0 | 3 | 139 | 10 | 146 | 2.01e-62 | 188 |
| MS.gene47853.t1 | MTR_4g073590 | 58.519 | 135 | 56 | 0 | 4 | 138 | 8 | 142 | 1.75e-57 | 175 |
| MS.gene47853.t1 | MTR_1g076170 | 56.522 | 138 | 60 | 0 | 2 | 139 | 10 | 147 | 4.76e-50 | 157 |
| MS.gene47853.t1 | MTR_4g073590 | 56.322 | 87 | 38 | 0 | 4 | 90 | 8 | 94 | 2.90e-33 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47853.t1 | AT3G46010 | 80.576 | 139 | 27 | 0 | 1 | 139 | 1 | 139 | 1.00e-86 | 249 |
| MS.gene47853.t1 | AT3G46010 | 80.435 | 138 | 27 | 0 | 2 | 139 | 13 | 150 | 6.11e-86 | 248 |
| MS.gene47853.t1 | AT5G59880 | 82.014 | 139 | 25 | 0 | 1 | 139 | 1 | 139 | 1.38e-85 | 246 |
| MS.gene47853.t1 | AT5G59890 | 80.576 | 139 | 27 | 0 | 1 | 139 | 1 | 139 | 4.32e-84 | 243 |
| MS.gene47853.t1 | AT3G46000 | 77.698 | 139 | 29 | 1 | 1 | 139 | 1 | 137 | 5.72e-79 | 229 |
| MS.gene47853.t1 | AT5G59890 | 79.545 | 132 | 27 | 0 | 8 | 139 | 1 | 132 | 1.60e-78 | 228 |
| MS.gene47853.t1 | AT5G59890 | 79.545 | 132 | 27 | 0 | 8 | 139 | 1 | 132 | 1.60e-78 | 228 |
| MS.gene47853.t1 | AT3G46000 | 76.978 | 139 | 30 | 1 | 1 | 139 | 20 | 156 | 5.05e-78 | 228 |
| MS.gene47853.t1 | AT3G46000 | 76.515 | 132 | 29 | 1 | 8 | 139 | 1 | 130 | 2.14e-73 | 215 |
| MS.gene47853.t1 | AT1G01750 | 69.784 | 139 | 42 | 0 | 1 | 139 | 1 | 139 | 3.54e-73 | 215 |
| MS.gene47853.t1 | AT4G00680 | 68.345 | 139 | 44 | 0 | 1 | 139 | 1 | 139 | 7.46e-73 | 214 |
| MS.gene47853.t1 | AT1G01750 | 69.565 | 138 | 42 | 0 | 2 | 139 | 7 | 144 | 2.84e-72 | 213 |
| MS.gene47853.t1 | AT4G00680 | 68.116 | 138 | 44 | 0 | 2 | 139 | 12 | 149 | 7.46e-72 | 212 |
| MS.gene47853.t1 | AT4G25590 | 70.290 | 138 | 39 | 1 | 1 | 138 | 1 | 136 | 2.55e-71 | 210 |
| MS.gene47853.t1 | AT5G52360 | 69.565 | 138 | 40 | 1 | 1 | 138 | 1 | 136 | 1.75e-70 | 208 |
| MS.gene47853.t1 | AT5G59880 | 71.223 | 139 | 25 | 1 | 1 | 139 | 1 | 124 | 2.26e-70 | 207 |
| MS.gene47853.t1 | AT4G25590 | 68.702 | 131 | 39 | 1 | 8 | 138 | 1 | 129 | 7.71e-66 | 196 |
| MS.gene47853.t1 | AT2G31200 | 54.745 | 137 | 62 | 0 | 3 | 139 | 10 | 146 | 2.35e-57 | 175 |
| MS.gene47853.t1 | AT4G34970 | 53.237 | 139 | 65 | 0 | 1 | 139 | 3 | 141 | 6.55e-55 | 169 |
| MS.gene47853.t1 | AT2G16700 | 53.333 | 135 | 63 | 0 | 4 | 138 | 8 | 142 | 6.20e-53 | 164 |
| MS.gene47853.t1 | AT2G16700 | 53.435 | 131 | 61 | 0 | 8 | 138 | 1 | 131 | 6.39e-51 | 158 |
| MS.gene47853.t1 | AT2G16700 | 53.435 | 131 | 61 | 0 | 8 | 138 | 1 | 131 | 6.39e-51 | 158 |
| MS.gene47853.t1 | AT3G45990 | 58.993 | 139 | 44 | 4 | 8 | 139 | 1 | 133 | 1.16e-49 | 155 |
| MS.gene47853.t1 | AT2G16700 | 51.724 | 87 | 42 | 0 | 4 | 90 | 8 | 94 | 1.74e-29 | 103 |
Find 31 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTGCAAGTTGAGGTTTA+TGG | 0.271763 | 4.4:+12813181 | MS.gene47853:CDS |
| CTCTCTCTTGAATCTATCTT+TGG | 0.282496 | 4.4:-12813544 | None:intergenic |
| CTTCTAACCCTTGATGTGTC+AGG | 0.419707 | 4.4:-12813501 | None:intergenic |
| GTTCATCATTTACAAGATTG+AGG | 0.446804 | 4.4:+12813229 | MS.gene47853:CDS |
| GCAACTGATCCTACCGAGAT+TGG | 0.447691 | 4.4:+12813594 | MS.gene47853:CDS |
| GCACTCATCAGCAGGAAGGC+AGG | 0.460234 | 4.4:-12813318 | None:intergenic |
| ACTGTTGGAGATCATTTAGT+TGG | 0.469715 | 4.4:-12813640 | None:intergenic |
| GAAGGTCTCCTGACACATCA+AGG | 0.471655 | 4.4:+12813493 | MS.gene47853:intron |
| TTACAGGCAAATGCGGCATC+CGG | 0.477481 | 4.4:+12813143 | MS.gene47853:intron |
| GTCATCATGGACCGCCATAC+CGG | 0.500234 | 4.4:-12813162 | None:intergenic |
| ACCTCAACTTGCAGTCATCA+TGG | 0.504088 | 4.4:-12813175 | None:intergenic |
| AGATTCAAGAGAGAGCTTGA+TGG | 0.510719 | 4.4:+12813552 | MS.gene47853:CDS |
| GCATAGCGGCACTCATCAGC+AGG | 0.511636 | 4.4:-12813326 | None:intergenic |
| GGCAAATGCGGCATCCGGTA+TGG | 0.514841 | 4.4:+12813148 | MS.gene47853:intron |
| CAAGTCATTGTGGAGAAGCT+TGG | 0.515016 | 4.4:+12813263 | MS.gene47853:CDS |
| GAACACATCAAGACCAATCT+CGG | 0.518975 | 4.4:-12813607 | None:intergenic |
| AAGGCAATGTTCCCAAAAGC+AGG | 0.520698 | 4.4:+12813375 | MS.gene47853:CDS |
| TTATGGAGCTCAAGGCGAAA+AGG | 0.536997 | 4.4:+12813198 | MS.gene47853:CDS |
| GATTATGAGTTTATGACTGA+AGG | 0.546901 | 4.4:+12813356 | MS.gene47853:CDS |
| GTTGAGGTTTATGGAGCTCA+AGG | 0.554455 | 4.4:+12813190 | MS.gene47853:CDS |
| AATTGTTCGTAACCTTCGAC+GGG | 0.561631 | 4.4:-12813290 | None:intergenic |
| AAATTGTTCGTAACCTTCGA+CGG | 0.562726 | 4.4:-12813291 | None:intergenic |
| TGGAGATCATTTAGTTGGCA+CGG | 0.583240 | 4.4:-12813635 | None:intergenic |
| AAGCTTGGCGAGCCCGTCGA+AGG | 0.586923 | 4.4:+12813278 | MS.gene47853:CDS |
| TCCATGATGACTGCAAGTTG+AGG | 0.591374 | 4.4:+12813174 | MS.gene47853:CDS |
| AAGGTCTCCTGACACATCAA+GGG | 0.598732 | 4.4:+12813494 | MS.gene47853:intron |
| AGCGGCACTCATCAGCAGGA+AGG | 0.621421 | 4.4:-12813322 | None:intergenic |
| GAAACAGAAACAAGTCATTG+TGG | 0.633781 | 4.4:+12813253 | MS.gene47853:CDS |
| ACATCAAGACCAATCTCGGT+AGG | 0.647816 | 4.4:-12813603 | None:intergenic |
| AAATGCGGCATCCGGTATGG+CGG | 0.649579 | 4.4:+12813151 | MS.gene47853:CDS |
| TCAAGGCGAAAAGGACACAC+AGG | 0.692606 | 4.4:+12813207 | MS.gene47853:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCTTAAAAACCTAATTA+GGG | + | chr4.4:12812661-12812680 | MS.gene47853:intron | 15.0% |
| !! | TAAATCTTAAAAACCTAATT+AGG | + | chr4.4:12812660-12812679 | MS.gene47853:intron | 15.0% |
| !! | TACAATCATTTATTTATTTG+AGG | + | chr4.4:12813028-12813047 | MS.gene47853:intron | 15.0% |
| !!! | ACTTATTTTTTTAGCTATTT+TGG | + | chr4.4:12812750-12812769 | MS.gene47853:intron | 15.0% |
| !!! | CTTATTTTTTTAGCTATTTT+GGG | + | chr4.4:12812751-12812770 | MS.gene47853:intron | 15.0% |
| !!! | TTATTTTTTTAGCTATTTTG+GGG | + | chr4.4:12812752-12812771 | MS.gene47853:intron | 15.0% |
| !!! | TTGAATTAAATTTTATGTTG+TGG | - | chr4.4:12812515-12812534 | None:intergenic | 15.0% |
| !! | AAATGATAAAGTAAACAGAA+CGG | - | chr4.4:12812225-12812244 | None:intergenic | 20.0% |
| !! | ACAGTAATCAAATAATCATT+AGG | - | chr4.4:12812372-12812391 | None:intergenic | 20.0% |
| !! | TAATAATTTAACTAAGCACT+TGG | + | chr4.4:12812695-12812714 | MS.gene47853:intron | 20.0% |
| !! | TATATATGTTCTATTTGGAT+TGG | - | chr4.4:12812616-12812635 | None:intergenic | 20.0% |
| !! | TTGCATATATATGTTCTATT+TGG | - | chr4.4:12812621-12812640 | None:intergenic | 20.0% |
| !! | TTTATGTTGTGGTATAAAAA+TGG | - | chr4.4:12812504-12812523 | None:intergenic | 20.0% |
| !!! | AATAAGTTGATCAAAACTTA+TGG | + | chr4.4:12812778-12812797 | MS.gene47853:intron | 20.0% |
| !!! | ATTAGGTTTGCTTAAAAAAT+GGG | - | chr4.4:12812355-12812374 | None:intergenic | 20.0% |
| ! | AAAAATAAGGGAAACTTATG+TGG | + | chr4.4:12812910-12812929 | MS.gene47853:intron | 25.0% |
| ! | AATTAACCACTCAAAATCAT+AGG | + | chr4.4:12812402-12812421 | MS.gene47853:intron | 25.0% |
| ! | ACAAGCAGACATAATTTAAA+CGG | - | chr4.4:12813056-12813075 | None:intergenic | 25.0% |
| ! | AGAGAAAACACAATAAAACT+TGG | - | chr4.4:12812991-12813010 | None:intergenic | 25.0% |
| ! | GAAGTATGCTTCAAAAATAA+GGG | + | chr4.4:12812898-12812917 | MS.gene47853:intron | 25.0% |
| ! | TGAAGTATGCTTCAAAAATA+AGG | + | chr4.4:12812897-12812916 | MS.gene47853:intron | 25.0% |
| !! | AACATGATAGTTTCTTTTGA+AGG | + | chr4.4:12813475-12813494 | MS.gene47853:intron | 25.0% |
| !! | CATTAGGTTTGCTTAAAAAA+TGG | - | chr4.4:12812356-12812375 | None:intergenic | 25.0% |
| !! | TATGAAAAAAATCCTGCTTT+TGG | - | chr4.4:12813390-12813409 | None:intergenic | 25.0% |
| !!! | ATGAAAAAAATCCTGCTTTT+GGG | - | chr4.4:12813389-12813408 | None:intergenic | 25.0% |
| AAAACTTATGGATCTGTCAT+CGG | + | chr4.4:12812790-12812809 | MS.gene47853:intron | 30.0% | |
| CAGTTTCAATCGAACTATTT+GGG | + | chr4.4:12813097-12813116 | MS.gene47853:intron | 30.0% | |
| CATAATATTGACCTGAATGA+TGG | - | chr4.4:12812439-12812458 | None:intergenic | 30.0% | |
| CATAATCAAAAACAGCATAG+CGG | - | chr4.4:12813343-12813362 | None:intergenic | 30.0% | |
| GATTATGAGTTTATGACTGA+AGG | + | chr4.4:12813356-12813375 | MS.gene47853:CDS | 30.0% | |
| GTTCATCATTTACAAGATTG+AGG | + | chr4.4:12813229-12813248 | MS.gene47853:CDS | 30.0% | |
| TCAGCATTTAAGAAAGATGA+AGG | - | chr4.4:12812158-12812177 | None:intergenic | 30.0% | |
| TTGAAGCATACTTCAATCTA+GGG | - | chr4.4:12812892-12812911 | None:intergenic | 30.0% | |
| ! | TGTAATTTTACAGGCAAATG+CGG | + | chr4.4:12813136-12813155 | MS.gene47853:intron | 30.0% |
| ! | TTATGCGTCTGTAATTTTAC+AGG | + | chr4.4:12813127-12813146 | MS.gene47853:intron | 30.0% |
| ! | TTTGAAGCATACTTCAATCT+AGG | - | chr4.4:12812893-12812912 | None:intergenic | 30.0% |
| ! | TTTTCGTAATTCCATCATTC+AGG | + | chr4.4:12812425-12812444 | MS.gene47853:intron | 30.0% |
| !! | AAAACCTCACTATTTTGAAG+GGG | + | chr4.4:12812946-12812965 | MS.gene47853:intron | 30.0% |
| !! | GAAAACCTCACTATTTTGAA+GGG | + | chr4.4:12812945-12812964 | MS.gene47853:intron | 30.0% |
| !! | TGAAAACCTCACTATTTTGA+AGG | + | chr4.4:12812944-12812963 | MS.gene47853:intron | 30.0% |
| AAATTGTTCGTAACCTTCGA+CGG | - | chr4.4:12813294-12813313 | None:intergenic | 35.0% | |
| AATCCAAACAAGCCCTAATT+AGG | - | chr4.4:12812676-12812695 | None:intergenic | 35.0% | |
| CCAAATAGTTCGATTGAAAC+TGG | - | chr4.4:12813099-12813118 | None:intergenic | 35.0% | |
| CCAGTTTCAATCGAACTATT+TGG | + | chr4.4:12813096-12813115 | MS.gene47853:intron | 35.0% | |
| CTCTCTCTTGAATCTATCTT+TGG | - | chr4.4:12813547-12813566 | None:intergenic | 35.0% | |
| GAAACAGAAACAAGTCATTG+TGG | + | chr4.4:12813253-12813272 | MS.gene47853:CDS | 35.0% | |
| GCTTATTTGAACTAATCCAG+CGG | - | chr4.4:12812594-12812613 | None:intergenic | 35.0% | |
| TGAAGCATACTTCAATCTAG+GGG | - | chr4.4:12812891-12812910 | None:intergenic | 35.0% | |
| ! | AAACCTAATTAGGGCTTGTT+TGG | + | chr4.4:12812670-12812689 | MS.gene47853:intron | 35.0% |
| ! | CGAAAACCTATGATTTTGAG+TGG | - | chr4.4:12812411-12812430 | None:intergenic | 35.0% |
| !!! | GCAGGATTTTTTTCATAGCA+TGG | + | chr4.4:12813393-12813412 | MS.gene47853:CDS | 35.0% |
| AATTGTTCGTAACCTTCGAC+GGG | - | chr4.4:12813293-12813312 | None:intergenic | 40.0% | |
| AGATTCAAGAGAGAGCTTGA+TGG | + | chr4.4:12813552-12813571 | MS.gene47853:CDS | 40.0% | |
| GAACACATCAAGACCAATCT+CGG | - | chr4.4:12813610-12813629 | None:intergenic | 40.0% | |
| GAGATCAAAATCAGATCTGC+AGG | - | chr4.4:12812249-12812268 | None:intergenic | 40.0% | |
| TTCTCCCCTTCAAAATAGTG+AGG | - | chr4.4:12812953-12812972 | None:intergenic | 40.0% | |
| ! | TGACTGCAAGTTGAGGTTTA+TGG | + | chr4.4:12813181-12813200 | MS.gene47853:CDS | 40.0% |
| !! | AGCATGGTGATGTTCTGTTT+TGG | + | chr4.4:12813409-12813428 | MS.gene47853:intron | 40.0% |
| AAGGCAATGTTCCCAAAAGC+AGG | + | chr4.4:12813375-12813394 | MS.gene47853:CDS | 45.0% | |
| AAGGTCTCCTGACACATCAA+GGG | + | chr4.4:12813494-12813513 | MS.gene47853:intron | 45.0% | |
| ACATCAAGACCAATCTCGGT+AGG | - | chr4.4:12813606-12813625 | None:intergenic | 45.0% | |
| ACCGATGCTACAACAGTAAC+TGG | - | chr4.4:12813439-12813458 | None:intergenic | 45.0% | |
| ACCTCAACTTGCAGTCATCA+TGG | - | chr4.4:12813178-12813197 | None:intergenic | 45.0% | |
| CAAGTCATTGTGGAGAAGCT+TGG | + | chr4.4:12813263-12813282 | MS.gene47853:CDS | 45.0% | |
| CTTCTAACCCTTGATGTGTC+AGG | - | chr4.4:12813504-12813523 | None:intergenic | 45.0% | |
| GCCAGTTACTGTTGTAGCAT+CGG | + | chr4.4:12813435-12813454 | MS.gene47853:intron | 45.0% | |
| GTTGAGGTTTATGGAGCTCA+AGG | + | chr4.4:12813190-12813209 | MS.gene47853:CDS | 45.0% | |
| TCAAATAGTTCCTTTGCCGC+TGG | + | chr4.4:12812575-12812594 | MS.gene47853:intron | 45.0% | |
| TCCATGATGACTGCAAGTTG+AGG | + | chr4.4:12813174-12813193 | MS.gene47853:CDS | 45.0% | |
| TTATGGAGCTCAAGGCGAAA+AGG | + | chr4.4:12813198-12813217 | MS.gene47853:CDS | 45.0% | |
| TTGAACTAATCCAGCGGCAA+AGG | - | chr4.4:12812588-12812607 | None:intergenic | 45.0% | |
| GAAGGTCTCCTGACACATCA+AGG | + | chr4.4:12813493-12813512 | MS.gene47853:intron | 50.0% | |
| GCAACTGATCCTACCGAGAT+TGG | + | chr4.4:12813594-12813613 | MS.gene47853:CDS | 50.0% | |
| TCAAGGCGAAAAGGACACAC+AGG | + | chr4.4:12813207-12813226 | MS.gene47853:CDS | 50.0% | |
| TTACAGGCAAATGCGGCATC+CGG | + | chr4.4:12813143-12813162 | MS.gene47853:intron | 50.0% | |
| AAATGCGGCATCCGGTATGG+CGG | + | chr4.4:12813151-12813170 | MS.gene47853:CDS | 55.0% | |
| GTCATCATGGACCGCCATAC+CGG | - | chr4.4:12813165-12813184 | None:intergenic | 55.0% | |
| AGCGGCACTCATCAGCAGGA+AGG | - | chr4.4:12813325-12813344 | None:intergenic | 60.0% | |
| GCACTCATCAGCAGGAAGGC+AGG | - | chr4.4:12813321-12813340 | None:intergenic | 60.0% | |
| GCATAGCGGCACTCATCAGC+AGG | - | chr4.4:12813329-12813348 | None:intergenic | 60.0% | |
| GGCAAATGCGGCATCCGGTA+TGG | + | chr4.4:12813148-12813167 | MS.gene47853:intron | 60.0% | |
| AAGCTTGGCGAGCCCGTCGA+AGG | + | chr4.4:12813278-12813297 | MS.gene47853:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 12812139 | 12813647 | 12812139 | ID=MS.gene47853 |
| chr4.4 | mRNA | 12812139 | 12813647 | 12812139 | ID=MS.gene47853.t1;Parent=MS.gene47853 |
| chr4.4 | exon | 12812139 | 12812141 | 12812139 | ID=MS.gene47853.t1.exon1;Parent=MS.gene47853.t1 |
| chr4.4 | CDS | 12812139 | 12812141 | 12812139 | ID=cds.MS.gene47853.t1;Parent=MS.gene47853.t1 |
| chr4.4 | exon | 12813149 | 12813414 | 12813149 | ID=MS.gene47853.t1.exon2;Parent=MS.gene47853.t1 |
| chr4.4 | CDS | 12813149 | 12813414 | 12813149 | ID=cds.MS.gene47853.t1;Parent=MS.gene47853.t1 |
| chr4.4 | exon | 12813497 | 12813647 | 12813497 | ID=MS.gene47853.t1.exon3;Parent=MS.gene47853.t1 |
| chr4.4 | CDS | 12813497 | 12813647 | 12813497 | ID=cds.MS.gene47853.t1;Parent=MS.gene47853.t1 |
| Gene Sequence |
| Protein sequence |
