AlfalfaGEDB | MS.gene87667

M. sativa cultivar XinJiangDaYe / MS.gene87667

KEGG: K05765
GO: GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005856 GO:0007015 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0015629 GO:0016043 GO:0022411 GO:0030042 GO:0032984 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043624 GO:0043933 GO:0051261 GO:0071840 GO:0097435 GO:0110165
PFAM: PF00241.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87667.t1	XP_013468343.1	97.8	138	3	0	34	171	2	139	2.30E-70	275

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87667.t1	Q9ZSK3	81.9	138	25	0	34	171	2	139	1.2e-62	240.7

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87667.t1	G7ZZK8	97.8	138	3	0	34	171	2	139	1.7e-70	275.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene058991	MS.gene87667	0.901868	1.73E-78	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene87667	MS.gene23488	PPI
MS.gene87667	MS.gene037986	PPI
MS.gene87667	MS.gene34500	PPI
MS.gene037983	MS.gene87667	PPI
MS.gene87667	MS.gene97005	PPI
MS.gene87667	MS.gene037980	PPI
MS.gene87667	MS.gene47853	PPI
MS.gene87667	MS.gene27898	PPI
MS.gene87667	MS.gene037983	PPI
MS.gene87667	MS.gene037982	PPI
MS.gene87667	MS.gene02797	PPI
MS.gene87667	MS.gene037990	PPI
MS.gene87667	MS.gene24057	PPI
MS.gene018706	MS.gene87667	PPI
MS.gene87667	MS.gene41437	PPI
MS.gene87667	MS.gene058991	PPI
MS.gene87667	MS.gene003535	PPI
MS.gene87667	MS.gene063026	PPI
MS.gene87667	MS.gene023659	PPI
MS.gene87667	MS.gene057694	PPI
MS.gene87667	MS.gene020366	PPI
MS.gene87667	MS.gene003218	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87667.t1	MTR_1g068950	97.826	138	3	0	34	171	2	139	1.61e-97	278
MS.gene87667.t1	MTR_2g028670	78.261	138	30	0	34	171	2	139	3.20e-81	236
MS.gene87667.t1	MTR_8g088210	76.087	138	33	0	34	171	2	139	7.10e-78	228
MS.gene87667.t1	MTR_5g010430	74.286	140	34	1	31	170	1	138	9.13e-77	225
MS.gene87667.t1	MTR_8g098470	71.533	137	37	1	34	170	2	136	2.54e-73	216
MS.gene87667.t1	MTR_8g088210	75.000	132	33	0	40	171	1	132	5.48e-73	216
MS.gene87667.t1	MTR_1g101190	72.464	138	36	1	32	169	461	596	1.30e-67	216
MS.gene87667.t1	MTR_7g096890	59.574	141	57	0	31	171	6	146	3.98e-65	196
MS.gene87667.t1	MTR_1g076170	61.594	138	53	0	34	171	10	147	4.70e-59	181
MS.gene87667.t1	MTR_4g073590	60.000	135	54	0	36	170	8	142	6.03e-58	178
MS.gene87667.t1	MTR_4g073590	60.920	87	34	0	36	122	8	94	2.19e-35	119

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87667.t1	AT5G59890	81.884	138	25	0	34	171	2	139	2.26e-84	244
MS.gene87667.t1	AT3G46010	81.884	138	25	0	34	171	13	150	8.03e-84	244
MS.gene87667.t1	AT3G46010	81.884	138	25	0	34	171	2	139	1.66e-83	243
MS.gene87667.t1	AT5G59890	81.061	132	25	0	40	171	1	132	1.48e-79	232
MS.gene87667.t1	AT5G59890	81.061	132	25	0	40	171	1	132	1.48e-79	232
MS.gene87667.t1	AT1G01750	72.917	144	39	0	28	171	1	144	7.88e-79	231
MS.gene87667.t1	AT4G00680	72.917	144	38	1	28	171	7	149	1.58e-78	230
MS.gene87667.t1	AT5G59880	74.638	138	35	0	34	171	2	139	9.57e-78	228
MS.gene87667.t1	AT4G00680	73.913	138	36	0	34	171	2	139	1.33e-77	228
MS.gene87667.t1	AT1G01750	74.638	138	35	0	34	171	2	139	4.02e-77	226
MS.gene87667.t1	AT3G46000	76.812	138	30	1	34	171	2	137	2.25e-76	224
MS.gene87667.t1	AT3G46000	76.812	138	30	1	34	171	21	156	4.76e-76	224
MS.gene87667.t1	AT4G25590	75.182	137	32	1	34	170	2	136	6.56e-74	218
MS.gene87667.t1	AT5G52360	75.182	137	32	1	34	170	2	136	7.37e-72	213
MS.gene87667.t1	AT3G46000	75.758	132	30	1	40	171	1	130	1.66e-71	212
MS.gene87667.t1	AT4G25590	74.046	131	32	1	40	170	1	129	5.57e-69	205
MS.gene87667.t1	AT5G59880	63.768	138	35	1	34	171	2	124	1.26e-62	189
MS.gene87667.t1	AT2G31200	58.156	141	59	0	31	171	6	146	1.43e-61	187
MS.gene87667.t1	AT2G16700	53.676	136	63	0	36	171	8	143	5.52e-54	168
MS.gene87667.t1	AT4G34970	53.285	137	64	0	35	171	5	141	5.78e-54	168
MS.gene87667.t1	AT2G16700	53.788	132	61	0	40	171	1	132	8.44e-52	162
MS.gene87667.t1	AT2G16700	53.788	132	61	0	40	171	1	132	8.44e-52	162
MS.gene87667.t1	AT3G45990	51.449	138	56	3	40	171	1	133	3.09e-43	140
MS.gene87667.t1	AT2G16700	49.020	102	52	0	36	137	8	109	1.58e-32	112

Find 0 sgRNAs with CRISPR-Local

Find 40 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTAAAATCAATCATAAAAAA+TGG	-	50850:10058-10077	None:intergenic	10.0%
!!	GTATATCATTTACAAGATTA+AGG	+	50850:9814-9833	MS.gene87667:CDS	20.0%
!	AAGCAACAAAATGATATACT+CGG	-	50850:10082-10101	None:intergenic	25.0%
!	CAACAGTTAACTTATAGATT+TGG	+	50850:10027-10046	MS.gene87667:intron	25.0%
!!	TGAATGCAAGTTAAAGTTTT+TGG	+	50850:9766-9785	MS.gene87667:CDS	25.0%
!!	TGATGTTTGTGAAATTTTAC+AGG	+	50850:9712-9731	MS.gene87667:CDS	25.0%
!!!	ATTTTGTTGCTTTTGTTTGA+AGG	+	50850:10090-10109	MS.gene87667:intron	25.0%
	AGCAACAAAATGATATACTC+GGG	-	50850:10081-10100	None:intergenic	30.0%
	CTTGTAAATGATATACCGAT+AGG	-	50850:9810-9829	None:intergenic	30.0%
!!	TGAAGAAAATTCTGCTTTTC+TGG	-	50850:9973-9992	None:intergenic	30.0%
!!!	TGATTTTGATTTTGTCACTG+AGG	+	50850:9940-9959	MS.gene87667:CDS	30.0%
	AAATCATCGTAACCATTTGC+AGG	-	50850:9878-9897	None:intergenic	35.0%
	ACATCAGATGCATCAACAAA+AGG	-	50850:9698-9717	None:intergenic	35.0%
	CTCCAAAGATAGGTTCAAAA+GGG	+	50850:10157-10176	MS.gene87667:CDS	35.0%
	GTTGTTAGTATGCTTGTTTG+TGG	+	50850:9646-9665	MS.gene87667:CDS	35.0%
	TCCTTACCCTTGAAATATCA+GGG	-	50850:10118-10137	None:intergenic	35.0%
	TTTATGCTAGCTCCAAAGAT+AGG	+	50850:10147-10166	MS.gene87667:CDS	35.0%
!	GCAGAATTTTCTTCATAGCT+TGG	+	50850:9978-9997	MS.gene87667:CDS	35.0%
!!!	GCTTGGTAATGTCAACTTTT+TGG	+	50850:9995-10014	MS.gene87667:intron	35.0%
!!!	GTTAAAGTTTTTGGAGCTCA+AGG	+	50850:9775-9794	MS.gene87667:CDS	35.0%
	ACATCAAGATCCATCTCAGT+AGG	-	50850:10221-10240	None:intergenic	40.0%
	CTCCTTACCCTTGAAATATC+AGG	-	50850:10119-10138	None:intergenic	40.0%
	GCTCCAAAGATAGGTTCAAA+AGG	+	50850:10156-10175	MS.gene87667:CDS	40.0%
!	AAGGTGCCCTGATATTTCAA+GGG	+	50850:10109-10128	MS.gene87667:intron	40.0%
!	CAAGTTGTTGTTGACAAGGT+TGG	+	50850:9848-9867	MS.gene87667:CDS	40.0%
!	CTCCCTTTTGAACCTATCTT+TGG	-	50850:10162-10181	None:intergenic	40.0%
!	GAAGCAAGTTGTTGTTGACA+AGG	+	50850:9844-9863	MS.gene87667:CDS	40.0%
	AACAGCATATCGACACTCGT+CGG	-	50850:9918-9937	None:intergenic	45.0%
	AGCTACTGATCCTACTGAGA+TGG	+	50850:10208-10227	MS.gene87667:CDS	45.0%
	AGGTTCAAAAGGGAGCTTGA+TGG	+	50850:10167-10186	MS.gene87667:CDS	45.0%
	GCCCTGATATTTCAAGGGTA+AGG	+	50850:10114-10133	MS.gene87667:CDS	45.0%
	GGTTCAAAAGGGAGCTTGAT+GGG	+	50850:10168-10187	MS.gene87667:CDS	45.0%
!	TGTGGCGTTGAAAGTGTGTA+TGG	+	50850:9664-9683	MS.gene87667:CDS	45.0%
!!	AAGGTTGGTGATCCTGCAAA+TGG	+	50850:9863-9882	MS.gene87667:CDS	45.0%
!!	GAAGGTGCCCTGATATTTCA+AGG	+	50850:10108-10127	MS.gene87667:intron	45.0%
	TCAAGGCGAAGAGGACCTAT+CGG	+	50850:9792-9811	MS.gene87667:CDS	50.0%
	TTACAGGCGAATGCAGCATC+AGG	+	50850:9728-9747	MS.gene87667:CDS	50.0%
!!!	TTTTGGAGCTCAAGGCGAAG+AGG	+	50850:9783-9802	MS.gene87667:CDS	50.0%
	GGCGAATGCAGCATCAGGTA+TGG	+	50850:9733-9752	MS.gene87667:CDS	55.0%
	GCATATCGACACTCGTCGGC+AGG	-	50850:9914-9933	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
50850	gene	9635	10262	9635	ID=MS.gene87667
50850	mRNA	9635	10262	9635	ID=MS.gene87667.t1;Parent=MS.gene87667
50850	exon	9635	9999	9635	ID=MS.gene87667.t1.exon1;Parent=MS.gene87667.t1
50850	CDS	9635	9999	9635	ID=cds.MS.gene87667.t1;Parent=MS.gene87667.t1
50850	exon	10112	10262	10112	ID=MS.gene87667.t1.exon2;Parent=MS.gene87667.t1
50850	CDS	10112	10262	10112	ID=cds.MS.gene87667.t1;Parent=MS.gene87667.t1

Gene Sequence

>MS.gene87667

ATGGTAATGGGGTTGTTAGTATGCTTGTTTGTGGCGTTGAAAGTGTGTATGGAGAAATTTCCTTTTGTTGATGCATCTGATGTTTGTGAAATTTTACAGGCGAATGCAGCATCAGGTATGGATGTGAATGATGAATGCAAGTTAAAGTTTTTGGAGCTCAAGGCGAAGAGGACCTATCGGTATATCATTTACAAGATTAAGGTGAAGCAGAAGCAAGTTGTTGTTGACAAGGTTGGTGATCCTGCAAATGGTTACGATGATTTCACTGCTAATCTTCCTGCCGACGAGTGTCGATATGCTGTTTATGATTTTGATTTTGTCACTGAGGAGAATTGCCAGAAAAGCAGAATTTTCTTCATAGCTTGGTAATGTCAACTTTTTGGATCTTAAAGCAACAGTTAACTTATAGATTTGGATATTCCATTTTTTATGATTGATTTTAACCCGAGTATATCATTTTGTTGCTTTTGTTTGAAGGTGCCCTGATATTTCAAGGGTAAGGAGCAAGATGATTTATGCTAGCTCCAAAGATAGGTTCAAAAGGGAGCTTGATGGGATTCAAGTTGAGTTGCAAGCTACTGATCCTACTGAGATGGATCTTGATGTGTTCAAAAGCCGTGTCAATTAA

Protein sequence

>MS.gene87667.t1

MVMGLLVCLFVALKVCMEKFPFVDASDVCEILQANAASGMDVNDECKLKFLELKAKRTYRYIIYKIKVKQKQVVVDKVGDPANGYDDFTANLPADECRYAVYDFDFVTEENCQKSRIFFIAWCPDISRVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFKSRVN