Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030903.t1 | XP_003630017.1 | 98.8 | 583 | 7 | 0 | 4 | 586 | 17 | 599 | 0.00E+00 | 1110.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030903.t1 | Q84MA5 | 67.1 | 553 | 181 | 1 | 10 | 561 | 16 | 568 | 1.4e-211 | 737.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030903.t1 | G7L9L9 | 98.8 | 583 | 7 | 0 | 4 | 586 | 17 | 599 | 0.0e+00 | 1110.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030903 | MS.gene38964 | PPI |
| MS.gene030903 | MS.gene08144 | PPI |
| MS.gene030903 | MS.gene042491 | PPI |
| MS.gene030903 | MS.gene073450 | PPI |
| MS.gene030903 | MS.gene41795 | PPI |
| MS.gene030903 | MS.gene041367 | PPI |
| MS.gene030903 | MS.gene58674 | PPI |
| MS.gene030903 | MS.gene00402 | PPI |
| MS.gene030903 | MS.gene47297 | PPI |
| MS.gene030903 | MS.gene49831 | PPI |
| MS.gene007811 | MS.gene030903 | PPI |
| MS.gene030903 | MS.gene38965 | PPI |
| MS.gene030903 | MS.gene08137 | PPI |
| MS.gene41792 | MS.gene030903 | PPI |
| MS.gene030903 | MS.gene32277 | PPI |
| MS.gene030903 | MS.gene08148 | PPI |
| MS.gene030903 | MS.gene042480 | PPI |
| MS.gene032361 | MS.gene030903 | PPI |
| MS.gene030903 | MS.gene41790 | PPI |
| MS.gene030903 | MS.gene007812 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030903.t1 | MTR_8g089360 | 98.630 | 584 | 8 | 0 | 3 | 586 | 16 | 599 | 0.0 | 1180 |
| MS.gene030903.t1 | MTR_8g089360 | 98.969 | 582 | 6 | 0 | 5 | 586 | 1 | 582 | 0.0 | 1178 |
| MS.gene030903.t1 | MTR_8g089320 | 74.216 | 574 | 144 | 3 | 13 | 582 | 21 | 594 | 0.0 | 860 |
| MS.gene030903.t1 | MTR_1g030660 | 61.168 | 582 | 220 | 3 | 3 | 583 | 8 | 584 | 0.0 | 721 |
| MS.gene030903.t1 | MTR_2g035430 | 56.743 | 571 | 245 | 2 | 12 | 581 | 20 | 589 | 0.0 | 676 |
| MS.gene030903.t1 | MTR_8g089340 | 73.378 | 447 | 114 | 2 | 141 | 582 | 1 | 447 | 0.0 | 623 |
| MS.gene030903.t1 | MTR_8g461380 | 50.268 | 559 | 274 | 3 | 12 | 567 | 27 | 584 | 0.0 | 553 |
| MS.gene030903.t1 | MTR_1g111740 | 42.832 | 579 | 306 | 6 | 20 | 583 | 6 | 574 | 3.60e-154 | 455 |
| MS.gene030903.t1 | MTR_4g099270 | 39.817 | 545 | 313 | 6 | 52 | 585 | 10 | 550 | 9.88e-124 | 376 |
| MS.gene030903.t1 | MTR_4g099270 | 44.828 | 377 | 204 | 2 | 24 | 396 | 3 | 379 | 9.63e-104 | 319 |
| MS.gene030903.t1 | MTR_4g099270 | 37.330 | 442 | 262 | 6 | 155 | 585 | 1 | 438 | 4.78e-90 | 285 |
| MS.gene030903.t1 | MTR_4g099270 | 43.607 | 305 | 168 | 2 | 24 | 324 | 3 | 307 | 2.28e-78 | 250 |
| MS.gene030903.t1 | MTR_7g086510 | 35.279 | 394 | 248 | 2 | 52 | 438 | 26 | 419 | 4.72e-71 | 241 |
| MS.gene030903.t1 | MTR_7g007850 | 31.955 | 532 | 344 | 10 | 46 | 563 | 29 | 556 | 6.24e-69 | 233 |
| MS.gene030903.t1 | MTR_6g027630 | 34.434 | 424 | 260 | 5 | 27 | 438 | 7 | 424 | 6.26e-69 | 234 |
| MS.gene030903.t1 | MTR_6g027630 | 34.204 | 421 | 265 | 4 | 27 | 438 | 7 | 424 | 2.68e-68 | 233 |
| MS.gene030903.t1 | MTR_7g086610 | 33.831 | 402 | 256 | 3 | 44 | 438 | 15 | 413 | 3.64e-68 | 232 |
| MS.gene030903.t1 | MTR_6g027680 | 34.236 | 406 | 254 | 4 | 42 | 438 | 26 | 427 | 4.02e-67 | 229 |
| MS.gene030903.t1 | MTR_7g007850 | 29.545 | 572 | 335 | 10 | 46 | 563 | 29 | 586 | 9.03e-67 | 228 |
| MS.gene030903.t1 | MTR_7g007850 | 35.661 | 401 | 249 | 5 | 46 | 438 | 29 | 428 | 7.90e-66 | 223 |
| MS.gene030903.t1 | MTR_6g027660 | 33.985 | 409 | 251 | 6 | 42 | 438 | 24 | 425 | 1.29e-65 | 226 |
| MS.gene030903.t1 | MTR_7g007850 | 35.661 | 401 | 249 | 5 | 46 | 438 | 29 | 428 | 1.73e-65 | 223 |
| MS.gene030903.t1 | MTR_6g027650 | 33.763 | 388 | 248 | 3 | 60 | 438 | 30 | 417 | 8.13e-65 | 223 |
| MS.gene030903.t1 | MTR_6g034535 | 46.320 | 231 | 112 | 4 | 353 | 582 | 89 | 308 | 1.86e-64 | 214 |
| MS.gene030903.t1 | MTR_6g034535 | 44.792 | 96 | 28 | 1 | 90 | 185 | 19 | 89 | 3.18e-16 | 80.5 |
| MS.gene030903.t1 | MTR_8g089342 | 75.214 | 117 | 29 | 0 | 14 | 130 | 23 | 139 | 6.99e-58 | 191 |
| MS.gene030903.t1 | MTR_6g027630 | 33.138 | 341 | 215 | 3 | 108 | 438 | 2 | 339 | 1.47e-50 | 183 |
| MS.gene030903.t1 | MTR_6g027670 | 31.646 | 158 | 108 | 0 | 281 | 438 | 1 | 158 | 5.36e-22 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030903.t1 | AT4G21120 | 65.451 | 576 | 198 | 1 | 10 | 584 | 16 | 591 | 0.0 | 779 |
| MS.gene030903.t1 | AT2G34960 | 58.228 | 553 | 228 | 2 | 12 | 562 | 12 | 563 | 0.0 | 665 |
| MS.gene030903.t1 | AT4G21120 | 62.812 | 441 | 163 | 1 | 145 | 584 | 1 | 441 | 0.0 | 572 |
| MS.gene030903.t1 | AT1G17120 | 50.998 | 551 | 268 | 2 | 13 | 562 | 30 | 579 | 0.0 | 558 |
| MS.gene030903.t1 | AT5G04770 | 40.972 | 576 | 309 | 6 | 22 | 574 | 15 | 582 | 1.16e-146 | 436 |
| MS.gene030903.t1 | AT3G10600 | 41.885 | 573 | 299 | 7 | 19 | 565 | 11 | 575 | 1.25e-142 | 426 |
| MS.gene030903.t1 | AT5G04770 | 44.271 | 384 | 204 | 2 | 22 | 395 | 15 | 398 | 1.24e-108 | 332 |
| MS.gene030903.t1 | AT3G10600 | 40.046 | 437 | 228 | 7 | 155 | 565 | 1 | 429 | 4.84e-100 | 311 |
| MS.gene030903.t1 | AT5G04770 | 38.826 | 443 | 240 | 6 | 155 | 574 | 1 | 435 | 5.91e-98 | 305 |
| MS.gene030903.t1 | AT3G03720 | 32.587 | 402 | 264 | 2 | 44 | 438 | 4 | 405 | 1.95e-69 | 235 |
| MS.gene030903.t1 | AT5G36940 | 33.170 | 407 | 261 | 4 | 42 | 438 | 5 | 410 | 2.83e-69 | 235 |
| MS.gene030903.t1 | AT1G58030 | 31.235 | 429 | 278 | 4 | 17 | 438 | 3 | 421 | 1.61e-66 | 228 |
| MS.gene030903.t1 | AT1G05940 | 30.220 | 546 | 327 | 10 | 56 | 565 | 40 | 567 | 1.50e-63 | 219 |
| MS.gene030903.t1 | AT1G05940 | 29.921 | 508 | 308 | 8 | 56 | 533 | 40 | 529 | 2.51e-60 | 209 |
| MS.gene030903.t1 | AT1G05940 | 31.395 | 430 | 282 | 5 | 56 | 473 | 40 | 468 | 1.02e-59 | 207 |
| MS.gene030903.t1 | AT1G05940 | 29.039 | 458 | 273 | 8 | 143 | 565 | 9 | 449 | 1.20e-43 | 162 |
Find 123 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAAAGTTTAGGTGATTA+TGG | 0.183327 | 4.3:-11031399 | MS.gene030903:CDS |
| GCTATTAATATATTCCTTCT+TGG | 0.203938 | 4.3:-11028283 | MS.gene030903:CDS |
| TGAATGGTTGGGATCTTATT+TGG | 0.215470 | 4.3:-11031260 | MS.gene030903:CDS |
| ATTCTATCTTTCAACCTAAA+TGG | 0.233964 | 4.3:+11031357 | None:intergenic |
| TAATCTCTTTGTCAACATAT+TGG | 0.256532 | 4.3:+11028131 | None:intergenic |
| GAACTAAATGCAACCGAAAA+TGG | 0.258383 | 4.3:+11028859 | None:intergenic |
| CACAATATGAACCCTGATTA+TGG | 0.260743 | 4.3:-11029279 | MS.gene030903:CDS |
| TCAAAGTCTTCTTCATTTGA+TGG | 0.269199 | 4.3:+11031280 | None:intergenic |
| TGCATACTTAAGAGTAGAAT+TGG | 0.276540 | 4.3:-11029439 | MS.gene030903:CDS |
| GTTGCAGAGGGTGGCAAAAT+AGG | 0.283118 | 4.3:+11029332 | None:intergenic |
| TTGATAAAGATTCATATATA+AGG | 0.285317 | 4.3:-11028255 | MS.gene030903:CDS |
| AATCTCTTTGTCAACATATT+GGG | 0.288744 | 4.3:+11028132 | None:intergenic |
| ATACTCCTTGAATATGTTAT+AGG | 0.292518 | 4.3:-11029384 | MS.gene030903:CDS |
| TATGCTTCATTTGCTCCTTT+TGG | 0.292689 | 4.3:-11029093 | MS.gene030903:CDS |
| CATTTATGAAAACACCATTT+AGG | 0.293778 | 4.3:-11031371 | MS.gene030903:CDS |
| GTTGAAGAGAGAAGAGATTC+TGG | 0.301802 | 4.3:+11029194 | None:intergenic |
| AAGCAAAGAAACCTAAAGTT+TGG | 0.310693 | 4.3:-11028345 | MS.gene030903:CDS |
| GAAGATTCATTCAAAAGTTT+AGG | 0.314300 | 4.3:-11031408 | MS.gene030903:CDS |
| AAAGATTCATATATAAGGTT+TGG | 0.336683 | 4.3:-11028250 | MS.gene030903:CDS |
| ATCGGCGCCGTCGTCGGTTC+CGG | 0.340214 | 4.3:-11031231 | MS.gene030903:CDS |
| ATGAGGGCTATAACAGCAAT+AGG | 0.342880 | 4.3:+11029246 | None:intergenic |
| GACATTCCTATTGGTCTTGT+AGG | 0.349217 | 4.3:-11028970 | MS.gene030903:CDS |
| TTTCGGGGTTGGCGTTGATT+AGG | 0.363441 | 4.3:+11029118 | None:intergenic |
| ATTGCCTTCATCATCATTGT+TGG | 0.370746 | 4.3:-11029141 | MS.gene030903:CDS |
| GATCTTATTTGGTTCGGAAT+CGG | 0.376968 | 4.3:-11031249 | MS.gene030903:CDS |
| AGCAAAGAAACCTAAAGTTT+GGG | 0.379219 | 4.3:-11028344 | MS.gene030903:CDS |
| AAGATTCATATATAAGGTTT+GGG | 0.381982 | 4.3:-11028249 | MS.gene030903:CDS |
| GGGTCAAGATGACCATAATC+AGG | 0.382582 | 4.3:+11029267 | None:intergenic |
| ATAAGGTTTGGGATGTGGTC+AGG | 0.401357 | 4.3:-11028238 | MS.gene030903:CDS |
| GTGCGTCGTTATTATTCAAC+TGG | 0.401775 | 4.3:-11028538 | MS.gene030903:CDS |
| TTGCATTTAGTTCTGTTGGA+TGG | 0.409334 | 4.3:-11028849 | MS.gene030903:CDS |
| TGCATTTAGTTCTGTTGGAT+GGG | 0.411581 | 4.3:-11028848 | MS.gene030903:CDS |
| TGTTGCATTGGGAGCATTGA+AGG | 0.418790 | 4.3:-11028809 | MS.gene030903:CDS |
| GCTCTTGTTCATGAGAAAAC+CGG | 0.418847 | 4.3:-11028697 | MS.gene030903:CDS |
| CAAGGGTGGCGATGGCTATG+AGG | 0.419014 | 4.3:+11029229 | None:intergenic |
| GGTTGGGATCTTATTTGGTT+CGG | 0.419604 | 4.3:-11031255 | MS.gene030903:CDS |
| TAAGTGTTGAAATCGACAAT+AGG | 0.420519 | 4.3:+11028593 | None:intergenic |
| GGCTAAATACATTGTTGCAT+TGG | 0.420648 | 4.3:-11028821 | MS.gene030903:CDS |
| GGTTGAAAGCAGACATACTA+TGG | 0.421791 | 4.3:-11028155 | MS.gene030903:CDS |
| TTAGTTCTGTTGGATGGGGA+TGG | 0.422848 | 4.3:-11028843 | MS.gene030903:CDS |
| CTTTGATGCAGTGTCAACTA+TGG | 0.425840 | 4.3:-11029019 | MS.gene030903:CDS |
| GCTAAATACATTGTTGCATT+GGG | 0.433060 | 4.3:-11028820 | MS.gene030903:CDS |
| TGAAGAAGACTTTGAATGGT+TGG | 0.433470 | 4.3:-11031272 | MS.gene030903:CDS |
| ATTGATCCTACAAGACCAAT+AGG | 0.439236 | 4.3:+11028964 | None:intergenic |
| CATATATAAGGTTTGGGATG+TGG | 0.442523 | 4.3:-11028243 | MS.gene030903:CDS |
| CAAATGAAGAAGACTTTGAA+TGG | 0.443211 | 4.3:-11031276 | MS.gene030903:CDS |
| TATTGGTCTTGTAGGATCAA+TGG | 0.444727 | 4.3:-11028962 | MS.gene030903:CDS |
| TCGGTTGCATTTAGTTCTGT+TGG | 0.449501 | 4.3:-11028853 | MS.gene030903:CDS |
| GAAGAAGACTTTGAATGGTT+GGG | 0.451214 | 4.3:-11031271 | MS.gene030903:CDS |
| TAGTTCTGTTGGATGGGGAT+GGG | 0.454120 | 4.3:-11028842 | MS.gene030903:CDS |
| AGTAGAATTGGGAGACTTTG+TGG | 0.458556 | 4.3:-11029427 | MS.gene030903:CDS |
| CTGCTCCTATAACATATTCA+AGG | 0.458801 | 4.3:+11029379 | None:intergenic |
| GTACTCACATGATGCCTCCT+TGG | 0.466399 | 4.3:-11028723 | MS.gene030903:CDS |
| TTTGTGGCCTTCATAGCTGC+TGG | 0.472452 | 4.3:-11029411 | MS.gene030903:CDS |
| CTCTTGTTCATGAGAAAACC+GGG | 0.472524 | 4.3:-11028696 | MS.gene030903:CDS |
| AAATGGTGCATTGACATCAA+TGG | 0.475079 | 4.3:+11028876 | None:intergenic |
| CCTGGCAGAGACATTCCTAT+TGG | 0.477268 | 4.3:-11028979 | MS.gene030903:CDS |
| GCATACTTAAGAGTAGAATT+GGG | 0.485267 | 4.3:-11029438 | MS.gene030903:CDS |
| TATGTTTCCAGCAGCTATGA+AGG | 0.486802 | 4.3:+11029404 | None:intergenic |
| TTCGGAATCGGCGCCGTCGT+CGG | 0.489934 | 4.3:-11031237 | MS.gene030903:CDS |
| TGAGTGATGGTTGGATTGGA+TGG | 0.492403 | 4.3:-11028426 | MS.gene030903:CDS |
| CCAATAGGAATGTCTCTGCC+AGG | 0.497538 | 4.3:+11028979 | None:intergenic |
| CAGCAGCCGTAGCTCGATCA+TGG | 0.497728 | 4.3:-11029359 | MS.gene030903:CDS |
| ACTTTAGGTTTCTTTGCTTG+TGG | 0.499703 | 4.3:+11028349 | None:intergenic |
| CTTGAAGCTCGTGAGGAGGC+TGG | 0.502388 | 4.3:-11031189 | MS.gene030903:CDS |
| TAAGGTTTGGGATGTGGTCA+GGG | 0.502438 | 4.3:-11028237 | MS.gene030903:CDS |
| ACTATTATACGAAAATCGTT+AGG | 0.506095 | 4.3:+11029303 | None:intergenic |
| CATAATCAGGGTTCATATTG+TGG | 0.510899 | 4.3:+11029280 | None:intergenic |
| AAATTATATGACACAGGAGA+TGG | 0.511787 | 4.3:-11031469 | None:intergenic |
| GAAGGTAACCAAGGAACTAA+AGG | 0.517947 | 4.3:+11028316 | None:intergenic |
| GCATTTAGTTCTGTTGGATG+GGG | 0.520674 | 4.3:-11028847 | MS.gene030903:CDS |
| AAAAGATTACATGGAGATTG+TGG | 0.522533 | 4.3:-11031322 | MS.gene030903:CDS |
| AAAACACCTCTGGTACCAAA+AGG | 0.527195 | 4.3:+11029078 | None:intergenic |
| TGTAGCATTCAAAGGTGTCC+CGG | 0.529346 | 4.3:+11028678 | None:intergenic |
| TACACGATCAAAAGATTACA+TGG | 0.530851 | 4.3:-11031331 | MS.gene030903:CDS |
| ATAGAGCAATGAGTGATGGT+TGG | 0.531056 | 4.3:-11028435 | MS.gene030903:CDS |
| TTCTGGTGCTTAAGACTGCA+AGG | 0.531934 | 4.3:+11029211 | None:intergenic |
| AACAAGAAGGCAAATACCTC+CGG | 0.540070 | 4.3:+11028372 | None:intergenic |
| AGAGATTAACAATGTTGAAG+AGG | 0.543356 | 4.3:-11028116 | MS.gene030903:CDS |
| TTTGAATGCTACAATTGCAA+TGG | 0.543834 | 4.3:-11028668 | MS.gene030903:CDS |
| GCAATGAGTGATGGTTGGAT+TGG | 0.544767 | 4.3:-11028430 | MS.gene030903:CDS |
| GAAAATGCCGGAACCGACGA+CGG | 0.546498 | 4.3:+11031224 | None:intergenic |
| GCTGTGGAAATTCCTGTCGC+AGG | 0.549047 | 4.3:-11031093 | MS.gene030903:intron |
| TAAGACTGCAAGGGTGGCGA+TGG | 0.550212 | 4.3:+11029221 | None:intergenic |
| TTGATTATTGGATCTTCATG+TGG | 0.550908 | 4.3:-11028469 | MS.gene030903:CDS |
| GACAACATTAACCAACAAAA+CGG | 0.553927 | 4.3:+11028777 | None:intergenic |
| ATTGCAATTGTAGCATTCAA+AGG | 0.554677 | 4.3:+11028670 | None:intergenic |
| CAGTGTAATAAACCTGCGAC+AGG | 0.557065 | 4.3:+11031081 | None:intergenic |
| GCATACGACAAAACAACGGC+AGG | 0.559328 | 4.3:+11031165 | None:intergenic |
| CACGGGTCTTGAAGCTCGTG+AGG | 0.559748 | 4.3:-11031196 | MS.gene030903:CDS |
| GTTTATAGAGCAATGAGTGA+TGG | 0.561915 | 4.3:-11028439 | MS.gene030903:CDS |
| TGCTTCTTATGATGCATCAA+AGG | 0.567964 | 4.3:-11028179 | MS.gene030903:CDS |
| TGCAGTGTCAACTATGGCCG+AGG | 0.568528 | 4.3:-11029013 | MS.gene030903:CDS |
| GTTGCATTGGGAGCATTGAA+GGG | 0.572087 | 4.3:-11028808 | MS.gene030903:CDS |
| AAGGGTGGCGATGGCTATGA+GGG | 0.572955 | 4.3:+11029230 | None:intergenic |
| CTTTATCAATAGATCCAAGA+AGG | 0.573540 | 4.3:+11028269 | None:intergenic |
| TAGGCCAACAATGATGATGA+AGG | 0.578906 | 4.3:+11029137 | None:intergenic |
| TGAGGGCTATAACAGCAATA+GGG | 0.590082 | 4.3:+11029247 | None:intergenic |
| CAAATTAAATTATATGACAC+AGG | 0.591539 | 4.3:-11031475 | None:intergenic |
| TCTTTGCTTGTGGAACAAGA+AGG | 0.591771 | 4.3:+11028359 | None:intergenic |
| GCAGAGGGTGGCAAAATAGG+AGG | 0.598124 | 4.3:+11029335 | None:intergenic |
| AATTATATGACACAGGAGAT+GGG | 0.599472 | 4.3:-11031468 | None:intergenic |
| GCAAAGAAACCTAAAGTTTG+GGG | 0.603737 | 4.3:-11028343 | MS.gene030903:CDS |
| GGAGGTCCATGATCGAGCTA+CGG | 0.611878 | 4.3:+11029353 | None:intergenic |
| GGTCAAGATGACCATAATCA+GGG | 0.614215 | 4.3:+11029268 | None:intergenic |
| GGGTCTTGAAGCTCGTGAGG+AGG | 0.615839 | 4.3:-11031193 | MS.gene030903:CDS |
| ACCCGTGAGAACGAAAATGC+CGG | 0.617637 | 4.3:+11031212 | None:intergenic |
| CTGTTACACTGAGTTCGCTG+TGG | 0.620747 | 4.3:-11031109 | MS.gene030903:CDS |
| AATGGTTACAGCAACTTCCG+TGG | 0.620972 | 4.3:-11028650 | MS.gene030903:CDS |
| CAATAGGAATGTCTCTGCCA+GGG | 0.621672 | 4.3:+11028980 | None:intergenic |
| TTCTTATGATGCATCAAAGG+AGG | 0.629051 | 4.3:-11028176 | MS.gene030903:CDS |
| AGCAAAGAAAAGAACAGCTG+AGG | 0.637960 | 4.3:+11029050 | None:intergenic |
| GAGTGATGGTTGGATTGGAT+GGG | 0.641500 | 4.3:-11028425 | MS.gene030903:CDS |
| GGTGCTTAAGACTGCAAGGG+TGG | 0.641563 | 4.3:+11029215 | None:intergenic |
| TCTGGTGCTTAAGACTGCAA+GGG | 0.651168 | 4.3:+11029212 | None:intergenic |
| CAAAGAAACCTAAAGTTTGG+GGG | 0.656196 | 4.3:-11028342 | MS.gene030903:CDS |
| GACAGCATACGACAAAACAA+CGG | 0.658241 | 4.3:+11031161 | None:intergenic |
| CCGGTTCCTAAAAGCCACAA+TGG | 0.662648 | 4.3:+11028391 | None:intergenic |
| AAAGAAACCTAAAGTTTGGG+GGG | 0.664460 | 4.3:-11028341 | MS.gene030903:CDS |
| AATGTGAGTTAAATAACGTG+AGG | 0.693226 | 4.3:+11028750 | None:intergenic |
| TCATGAACAAGAGCAAACCA+AGG | 0.716329 | 4.3:+11028706 | None:intergenic |
| TGAACAAGAGCAAACCAAGG+AGG | 0.732183 | 4.3:+11028709 | None:intergenic |
| GAGATGGGTACAGAAAACAG+TGG | 0.787629 | 4.3:-11031453 | MS.gene030903:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATTTCCTAAATAA+AGG | + | chr4.3:11028573-11028592 | None:intergenic | 10.0% |
| !!! | ATTTTGTGATTTATTTTTTA+AGG | - | chr4.3:11028588-11028607 | MS.gene030903:CDS | 10.0% |
| !!! | TTATTTTTTTTATAGTGTTA+TGG | - | chr4.3:11029894-11029913 | MS.gene030903:intron | 10.0% |
| !! | TACAAAATGTATAGAAAAAT+AGG | + | chr4.3:11029822-11029841 | None:intergenic | 15.0% |
| !! | TTGATAAAGATTCATATATA+AGG | - | chr4.3:11031309-11031328 | MS.gene030903:CDS | 15.0% |
| !!! | TGAATATTATACCTTTATTT+AGG | - | chr4.3:11028559-11028578 | MS.gene030903:CDS | 15.0% |
| !!! | TGAGTAATTAATCATTTTTT+TGG | + | chr4.3:11029003-11029022 | None:intergenic | 15.0% |
| !! | AAAGATTCATATATAAGGTT+TGG | - | chr4.3:11031314-11031333 | MS.gene030903:CDS | 20.0% |
| !! | AAGATTCATATATAAGGTTT+GGG | - | chr4.3:11031315-11031334 | MS.gene030903:CDS | 20.0% |
| !! | ATCAACTATTATGTAGAAAA+TGG | + | chr4.3:11030023-11030042 | None:intergenic | 20.0% |
| !! | ATTAATTACTCATGAATTGA+AGG | - | chr4.3:11029011-11029030 | MS.gene030903:CDS | 20.0% |
| !! | TCAACTATTATGTAGAAAAT+GGG | + | chr4.3:11030022-11030041 | None:intergenic | 20.0% |
| !! | TGTATTTCTTAAAGTTAGAA+GGG | - | chr4.3:11029838-11029857 | MS.gene030903:intron | 20.0% |
| !! | TTAATAGCAATAGAAAAAGA+AGG | + | chr4.3:11031269-11031288 | None:intergenic | 20.0% |
| !! | TTGTATTTCTTAAAGTTAGA+AGG | - | chr4.3:11029837-11029856 | MS.gene030903:intron | 20.0% |
| !! | TTTAATTGATGTTATTCGTA+CGG | + | chr4.3:11029268-11029287 | None:intergenic | 20.0% |
| !! | TTTCTACATAATAGTTGATT+TGG | - | chr4.3:11030024-11030043 | MS.gene030903:intron | 20.0% |
| !!! | ATTAATCATTTTTTTGGTAG+TGG | + | chr4.3:11028997-11029016 | None:intergenic | 20.0% |
| !!! | ATTGATCATGAGTAATTTTA+AGG | + | chr4.3:11029332-11029351 | None:intergenic | 20.0% |
| !!! | ATTTAACTTTTAAGGTAAGA+GGG | + | chr4.3:11029972-11029991 | None:intergenic | 20.0% |
| !!! | GTATGTATTGTTTTGATTAT+TGG | - | chr4.3:11031083-11031102 | MS.gene030903:intron | 20.0% |
| !!! | TATTTTTTCTTGATATAGTC+AGG | + | chr4.3:11029166-11029185 | None:intergenic | 20.0% |
| !!! | TGATTTACTATTTTCTCATT+GGG | - | chr4.3:11031357-11031376 | MS.gene030903:CDS | 20.0% |
| !!! | TGTTTTAGAGTATGTTTTTA+AGG | + | chr4.3:11029641-11029660 | None:intergenic | 20.0% |
| !!! | TTAAAAGTATGTTTGAATAG+AGG | - | chr4.3:11028696-11028715 | MS.gene030903:CDS | 20.0% |
| !!! | TTGATTTACTATTTTCTCAT+TGG | - | chr4.3:11031356-11031375 | MS.gene030903:CDS | 20.0% |
| !!! | TTTTTATAGTGTTATGGTTA+TGG | - | chr4.3:11029900-11029919 | MS.gene030903:intron | 20.0% |
| ! | AAGTATAAACATGACTTTGT+TGG | + | chr4.3:11029190-11029209 | None:intergenic | 25.0% |
| ! | AATCTCTTTGTCAACATATT+GGG | + | chr4.3:11031435-11031454 | None:intergenic | 25.0% |
| ! | AATTACTCATGATCAATTGA+AGG | - | chr4.3:11029335-11029354 | MS.gene030903:CDS | 25.0% |
| ! | ACTATTATACGAAAATCGTT+AGG | + | chr4.3:11030264-11030283 | None:intergenic | 25.0% |
| ! | ATACTCCTTGAATATGTTAT+AGG | - | chr4.3:11030180-11030199 | MS.gene030903:intron | 25.0% |
| ! | ATTCTATCTTTCAACCTAAA+TGG | + | chr4.3:11028210-11028229 | None:intergenic | 25.0% |
| ! | CATTTATGAAAACACCATTT+AGG | - | chr4.3:11028193-11028212 | MS.gene030903:CDS | 25.0% |
| ! | GAAGATTCATTCAAAAGTTT+AGG | - | chr4.3:11028156-11028175 | MS.gene030903:CDS | 25.0% |
| ! | GCTATTAATATATTCCTTCT+TGG | - | chr4.3:11031281-11031300 | MS.gene030903:CDS | 25.0% |
| ! | GTCATGTTTATACTTAAAGT+TGG | - | chr4.3:11029195-11029214 | MS.gene030903:CDS | 25.0% |
| ! | TAATCTCTTTGTCAACATAT+TGG | + | chr4.3:11031436-11031455 | None:intergenic | 25.0% |
| ! | TGCATAAAATATGCAAAGTT+CGG | - | chr4.3:11028957-11028976 | MS.gene030903:CDS | 25.0% |
| ! | TTCAAAAGTTTAGGTGATTA+TGG | - | chr4.3:11028165-11028184 | MS.gene030903:CDS | 25.0% |
| !! | AAACTTTTGAATGAATCTTC+TGG | + | chr4.3:11028156-11028175 | None:intergenic | 25.0% |
| !! | AACTTTTGAATGAATCTTCT+GGG | + | chr4.3:11028155-11028174 | None:intergenic | 25.0% |
| !! | TTTGAATAGAGGATTTTGAA+GGG | - | chr4.3:11028707-11028726 | MS.gene030903:CDS | 25.0% |
| !! | TTTTGTAAACACAACAATCA+TGG | - | chr4.3:11029081-11029100 | MS.gene030903:CDS | 25.0% |
| !!! | AGTAATTTTAAGGTGAGTTT+TGG | + | chr4.3:11029322-11029341 | None:intergenic | 25.0% |
| !!! | GATTTAACTTTTAAGGTAAG+AGG | + | chr4.3:11029973-11029992 | None:intergenic | 25.0% |
| !!! | TATGTTTTTAAGGTGAGTTT+TGG | + | chr4.3:11029631-11029650 | None:intergenic | 25.0% |
| !!! | TGCATTGGATTTAACTTTTA+AGG | + | chr4.3:11029980-11029999 | None:intergenic | 25.0% |
| AAAAGATTACATGGAGATTG+TGG | - | chr4.3:11028242-11028261 | MS.gene030903:CDS | 30.0% | |
| AAGCAAAGAAACCTAAAGTT+TGG | - | chr4.3:11031219-11031238 | MS.gene030903:CDS | 30.0% | |
| AATGTGAGTTAAATAACGTG+AGG | + | chr4.3:11030817-11030836 | None:intergenic | 30.0% | |
| AGAGATTAACAATGTTGAAG+AGG | - | chr4.3:11031448-11031467 | MS.gene030903:CDS | 30.0% | |
| AGCAAAGAAACCTAAAGTTT+GGG | - | chr4.3:11031220-11031239 | MS.gene030903:CDS | 30.0% | |
| ATACAGTATATAGGTAGCAA+AGG | - | chr4.3:11029861-11029880 | MS.gene030903:intron | 30.0% | |
| ATAGAAAAAGAAGGTAACCA+AGG | + | chr4.3:11031260-11031279 | None:intergenic | 30.0% | |
| ATGATATGCAATCACAAGTA+AGG | + | chr4.3:11029781-11029800 | None:intergenic | 30.0% | |
| ATGATCAATTGAAGGTAAAC+GGG | - | chr4.3:11029343-11029362 | MS.gene030903:CDS | 30.0% | |
| ATTGCAATTGTAGCATTCAA+AGG | + | chr4.3:11030897-11030916 | None:intergenic | 30.0% | |
| CAAATGAAGAAGACTTTGAA+TGG | - | chr4.3:11028288-11028307 | MS.gene030903:CDS | 30.0% | |
| CATAAAATATGCAAAGTTCG+GGG | - | chr4.3:11028959-11028978 | MS.gene030903:CDS | 30.0% | |
| CATGATCAATTGAAGGTAAA+CGG | - | chr4.3:11029342-11029361 | MS.gene030903:CDS | 30.0% | |
| CTTTATCAATAGATCCAAGA+AGG | + | chr4.3:11031298-11031317 | None:intergenic | 30.0% | |
| GACAACATTAACCAACAAAA+CGG | + | chr4.3:11030790-11030809 | None:intergenic | 30.0% | |
| GATGCATATAGTTCATTGTA+AGG | + | chr4.3:11029226-11029245 | None:intergenic | 30.0% | |
| GCATAAAATATGCAAAGTTC+GGG | - | chr4.3:11028958-11028977 | MS.gene030903:CDS | 30.0% | |
| GCATACTTAAGAGTAGAATT+GGG | - | chr4.3:11030126-11030145 | MS.gene030903:intron | 30.0% | |
| GCTAAATACATTGTTGCATT+GGG | - | chr4.3:11030744-11030763 | MS.gene030903:intron | 30.0% | |
| GTGTTTACAAAAAGACTTAG+CGG | + | chr4.3:11029073-11029092 | None:intergenic | 30.0% | |
| TACACGATCAAAAGATTACA+TGG | - | chr4.3:11028233-11028252 | MS.gene030903:CDS | 30.0% | |
| TATAGTGTTATGGTTATGGA+TGG | - | chr4.3:11029904-11029923 | MS.gene030903:intron | 30.0% | |
| TCAAAGTCTTCTTCATTTGA+TGG | + | chr4.3:11028287-11028306 | None:intergenic | 30.0% | |
| TCTTGTGATTAAGTATGCAT+TGG | + | chr4.3:11029995-11030014 | None:intergenic | 30.0% | |
| TGAGACTAATTGAGTTATGT+GGG | - | chr4.3:11030073-11030092 | MS.gene030903:intron | 30.0% | |
| TGCATACTTAAGAGTAGAAT+TGG | - | chr4.3:11030125-11030144 | MS.gene030903:intron | 30.0% | |
| TTAGAAGGGATACAGTATAT+AGG | - | chr4.3:11029852-11029871 | MS.gene030903:intron | 30.0% | |
| TTGAGACTAATTGAGTTATG+TGG | - | chr4.3:11030072-11030091 | MS.gene030903:intron | 30.0% | |
| TTGATTATTGGATCTTCATG+TGG | - | chr4.3:11031095-11031114 | MS.gene030903:CDS | 30.0% | |
| TTTGAATGCTACAATTGCAA+TGG | - | chr4.3:11030896-11030915 | MS.gene030903:intron | 30.0% | |
| ! | AGCAAATGAAGCATAGTTTT+CGG | + | chr4.3:11030466-11030485 | None:intergenic | 30.0% |
| ! | GTTCTTTTCTTTGCTTACAT+AGG | - | chr4.3:11030522-11030541 | MS.gene030903:intron | 30.0% |
| ! | GTTTGAATAGAGGATTTTGA+AGG | - | chr4.3:11028706-11028725 | MS.gene030903:CDS | 30.0% |
| ! | TTTTTCTTGATATAGTCAGG+CGG | + | chr4.3:11029163-11029182 | None:intergenic | 30.0% |
| ! | TTTTTCTTGATATAGTCAGG+TGG | + | chr4.3:11029163-11029182 | None:intergenic | 30.0% |
| !! | GTTATTGTTTGTTATCAGGT+GGG | - | chr4.3:11030097-11030116 | MS.gene030903:intron | 30.0% |
| !! | GTTTTGTTGGTTAATGTTGT+CGG | - | chr4.3:11030789-11030808 | MS.gene030903:intron | 30.0% |
| !! | TAAGTGTTGAAATCGACAAT+AGG | + | chr4.3:11030974-11030993 | None:intergenic | 30.0% |
| !! | TGTTATTGTTTGTTATCAGG+TGG | - | chr4.3:11030096-11030115 | MS.gene030903:intron | 30.0% |
| !!! | AATTTTAAGGTGAGTTTTGG+AGG | + | chr4.3:11029319-11029338 | None:intergenic | 30.0% |
| !!! | ATTTTAAGGTGAGTTTTGGA+GGG | + | chr4.3:11029318-11029337 | None:intergenic | 30.0% |
| !!! | TTTTTAAGGTGAGTTTTGGA+GGG | + | chr4.3:11029627-11029646 | None:intergenic | 30.0% |
| AAAGAAACCTAAAGTTTGGG+GGG | - | chr4.3:11031223-11031242 | MS.gene030903:CDS | 35.0% | |
| ACTCATGAATTGAAGGTAAG+CGG | - | chr4.3:11029018-11029037 | MS.gene030903:CDS | 35.0% | |
| ATCAGTGAAAAATGCAACCA+CGG | + | chr4.3:11030934-11030953 | None:intergenic | 35.0% | |
| ATTGATCCTACAAGACCAAT+AGG | + | chr4.3:11030603-11030622 | None:intergenic | 35.0% | |
| ATTGCCTTCATCATCATTGT+TGG | - | chr4.3:11030423-11030442 | MS.gene030903:intron | 35.0% | |
| CAAAGAAACCTAAAGTTTGG+GGG | - | chr4.3:11031222-11031241 | MS.gene030903:CDS | 35.0% | |
| CACAATATGAACCCTGATTA+TGG | - | chr4.3:11030285-11030304 | MS.gene030903:intron | 35.0% | |
| CATAATCAGGGTTCATATTG+TGG | + | chr4.3:11030287-11030306 | None:intergenic | 35.0% | |
| CGGTATGTCTGGATATATTT+AGG | + | chr4.3:11029248-11029267 | None:intergenic | 35.0% | |
| CTGCTCCTATAACATATTCA+AGG | + | chr4.3:11030188-11030207 | None:intergenic | 35.0% | |
| GAACTAAATGCAACCGAAAA+TGG | + | chr4.3:11030708-11030727 | None:intergenic | 35.0% | |
| GAAGAAGACTTTGAATGGTT+GGG | - | chr4.3:11028293-11028312 | MS.gene030903:CDS | 35.0% | |
| GCAAAGAAACCTAAAGTTTG+GGG | - | chr4.3:11031221-11031240 | MS.gene030903:CDS | 35.0% | |
| GGCTAAATACATTGTTGCAT+TGG | - | chr4.3:11030743-11030762 | MS.gene030903:intron | 35.0% | |
| GTTTATAGAGCAATGAGTGA+TGG | - | chr4.3:11031125-11031144 | MS.gene030903:CDS | 35.0% | |
| TGAAGAAGACTTTGAATGGT+TGG | - | chr4.3:11028292-11028311 | MS.gene030903:CDS | 35.0% | |
| TGAATGGTTGGGATCTTATT+TGG | - | chr4.3:11028304-11028323 | MS.gene030903:CDS | 35.0% | |
| TGATCAATTGAAGGTAAACG+GGG | - | chr4.3:11029344-11029363 | MS.gene030903:CDS | 35.0% | |
| TGCTTCTTATGATGCATCAA+AGG | - | chr4.3:11031385-11031404 | MS.gene030903:CDS | 35.0% | |
| TTCTTATGATGCATCAAAGG+AGG | - | chr4.3:11031388-11031407 | MS.gene030903:CDS | 35.0% | |
| ! | AAATGGTGCATTGACATCAA+TGG | + | chr4.3:11030691-11030710 | None:intergenic | 35.0% |
| ! | ACTTTAGGTTTCTTTGCTTG+TGG | + | chr4.3:11031218-11031237 | None:intergenic | 35.0% |
| ! | ATTTTCGTGCTTGTAGCAAT+TGG | - | chr4.3:11030996-11031015 | MS.gene030903:intron | 35.0% |
| ! | CAAATGAAGCATAGTTTTCG+GGG | + | chr4.3:11030464-11030483 | None:intergenic | 35.0% |
| ! | CATATATAAGGTTTGGGATG+TGG | - | chr4.3:11031321-11031340 | MS.gene030903:CDS | 35.0% |
| ! | GCAAATGAAGCATAGTTTTC+GGG | + | chr4.3:11030465-11030484 | None:intergenic | 35.0% |
| ! | GTTAGGATTTTTGTTGCAGA+GGG | + | chr4.3:11030247-11030266 | None:intergenic | 35.0% |
| ! | TATGCTTCATTTGCTCCTTT+TGG | - | chr4.3:11030471-11030490 | MS.gene030903:intron | 35.0% |
| ! | TGATGTCAATGCACCATTTT+CGG | - | chr4.3:11030692-11030711 | MS.gene030903:intron | 35.0% |
| ! | TTTTCGTGCTTGTAGCAATT+GGG | - | chr4.3:11030997-11031016 | MS.gene030903:intron | 35.0% |
| !! | GATCTTATTTGGTTCGGAAT+CGG | - | chr4.3:11028315-11028334 | MS.gene030903:CDS | 35.0% |
| !! | GGGTGTTATTGTTTGTTATC+AGG | - | chr4.3:11030093-11030112 | MS.gene030903:intron | 35.0% |
| !! | TATTGGTCTTGTAGGATCAA+TGG | - | chr4.3:11030602-11030621 | MS.gene030903:intron | 35.0% |
| !! | TGCATTTAGTTCTGTTGGAT+GGG | - | chr4.3:11030716-11030735 | MS.gene030903:intron | 35.0% |
| !! | TTGCATTTAGTTCTGTTGGA+TGG | - | chr4.3:11030715-11030734 | MS.gene030903:intron | 35.0% |
| !!! | ATCATTTTTTTGGTAGTGGC+CGG | + | chr4.3:11028993-11029012 | None:intergenic | 35.0% |
| !!! | GTTTTTAAGGTGAGTTTTGG+AGG | + | chr4.3:11029628-11029647 | None:intergenic | 35.0% |
| !!! | TGGTTTTGTAGTTCTGCATA+AGG | + | chr4.3:11030671-11030690 | None:intergenic | 35.0% |
| AAAACACCTCTGGTACCAAA+AGG | + | chr4.3:11030489-11030508 | None:intergenic | 40.0% | |
| AACAAGAAGGCAAATACCTC+CGG | + | chr4.3:11031195-11031214 | None:intergenic | 40.0% | |
| AGCAAAGAAAAGAACAGCTG+AGG | + | chr4.3:11030517-11030536 | None:intergenic | 40.0% | |
| AGTAGAATTGGGAGACTTTG+TGG | - | chr4.3:11030137-11030156 | MS.gene030903:intron | 40.0% | |
| ATAGAGCAATGAGTGATGGT+TGG | - | chr4.3:11031129-11031148 | MS.gene030903:CDS | 40.0% | |
| ATGAGGGCTATAACAGCAAT+AGG | + | chr4.3:11030321-11030340 | None:intergenic | 40.0% | |
| CTCATGAATTGAAGGTAAGC+GGG | - | chr4.3:11029019-11029038 | MS.gene030903:CDS | 40.0% | |
| CTCTTGTTCATGAGAAAACC+GGG | - | chr4.3:11030868-11030887 | MS.gene030903:intron | 40.0% | |
| CTTTGATGCAGTGTCAACTA+TGG | - | chr4.3:11030545-11030564 | MS.gene030903:intron | 40.0% | |
| GAAGGTAACCAAGGAACTAA+AGG | + | chr4.3:11031251-11031270 | None:intergenic | 40.0% | |
| GACAGCATACGACAAAACAA+CGG | + | chr4.3:11028406-11028425 | None:intergenic | 40.0% | |
| GCTCTTGTTCATGAGAAAAC+CGG | - | chr4.3:11030867-11030886 | MS.gene030903:intron | 40.0% | |
| GGTCAAGATGACCATAATCA+GGG | + | chr4.3:11030299-11030318 | None:intergenic | 40.0% | |
| GGTTGAAAGCAGACATACTA+TGG | - | chr4.3:11031409-11031428 | MS.gene030903:CDS | 40.0% | |
| GTGCGTCGTTATTATTCAAC+TGG | - | chr4.3:11031026-11031045 | MS.gene030903:intron | 40.0% | |
| GTTGAAGAGAGAAGAGATTC+TGG | + | chr4.3:11030373-11030392 | None:intergenic | 40.0% | |
| TATGTTTCCAGCAGCTATGA+AGG | + | chr4.3:11030163-11030182 | None:intergenic | 40.0% | |
| TCATGAACAAGAGCAAACCA+AGG | + | chr4.3:11030861-11030880 | None:intergenic | 40.0% | |
| TCATGAATTGAAGGTAAGCG+GGG | - | chr4.3:11029020-11029039 | MS.gene030903:CDS | 40.0% | |
| TCTTTGCTTGTGGAACAAGA+AGG | + | chr4.3:11031208-11031227 | None:intergenic | 40.0% | |
| TGAGGGCTATAACAGCAATA+GGG | + | chr4.3:11030320-11030339 | None:intergenic | 40.0% | |
| TGTTATTCGTACGGTATGTC+TGG | + | chr4.3:11029259-11029278 | None:intergenic | 40.0% | |
| ! | CGTTAGGATTTTTGTTGCAG+AGG | + | chr4.3:11030248-11030267 | None:intergenic | 40.0% |
| ! | CTTAGCGGATAAAGACTTAG+CGG | + | chr4.3:11029058-11029077 | None:intergenic | 40.0% |
| ! | GGTTGGGATCTTATTTGGTT+CGG | - | chr4.3:11028309-11028328 | MS.gene030903:CDS | 40.0% |
| ! | TAGGCCAACAATGATGATGA+AGG | + | chr4.3:11030430-11030449 | None:intergenic | 40.0% |
| ! | TGAGTTTAGCTCAGTTGGTT+GGG | - | chr4.3:11028930-11028949 | MS.gene030903:CDS | 40.0% |
| !! | GAATAGAGGATTTTGAAGGG+TGG | - | chr4.3:11028710-11028729 | MS.gene030903:CDS | 40.0% |
| !! | GACATTCCTATTGGTCTTGT+AGG | - | chr4.3:11030594-11030613 | MS.gene030903:intron | 40.0% |
| !! | GCATTTAGTTCTGTTGGATG+GGG | - | chr4.3:11030717-11030736 | MS.gene030903:intron | 40.0% |
| !! | TCGGTTGCATTTAGTTCTGT+TGG | - | chr4.3:11030711-11030730 | MS.gene030903:intron | 40.0% |
| !! | TGAGGCTTTAAAAACACCTC+TGG | + | chr4.3:11030499-11030518 | None:intergenic | 40.0% |
| !!! | TCATTTTTTTGGTAGTGGCC+GGG | + | chr4.3:11028992-11029011 | None:intergenic | 40.0% |
| AAAACCAAGACCGCCAGAAA+GGG | + | chr4.3:11029139-11029158 | None:intergenic | 45.0% | |
| AAAGTTCGGGGTTCAAATCC+CGG | - | chr4.3:11028971-11028990 | MS.gene030903:CDS | 45.0% | |
| AATGGTTACAGCAACTTCCG+TGG | - | chr4.3:11030914-11030933 | MS.gene030903:intron | 45.0% | |
| CAATAGGAATGTCTCTGCCA+GGG | + | chr4.3:11030587-11030606 | None:intergenic | 45.0% | |
| CAGTGTAATAAACCTGCGAC+AGG | + | chr4.3:11028486-11028505 | None:intergenic | 45.0% | |
| GAGATGGGTACAGAAAACAG+TGG | - | chr4.3:11028111-11028130 | MS.gene030903:CDS | 45.0% | |
| GCAATGAGTGATGGTTGGAT+TGG | - | chr4.3:11031134-11031153 | MS.gene030903:CDS | 45.0% | |
| GGGTCAAGATGACCATAATC+AGG | + | chr4.3:11030300-11030319 | None:intergenic | 45.0% | |
| TCTGGTGCTTAAGACTGCAA+GGG | + | chr4.3:11030355-11030374 | None:intergenic | 45.0% | |
| TGAACAAGAGCAAACCAAGG+AGG | + | chr4.3:11030858-11030877 | None:intergenic | 45.0% | |
| TTCTGGTGCTTAAGACTGCA+AGG | + | chr4.3:11030356-11030375 | None:intergenic | 45.0% | |
| ! | AGGATTTTTGTTGCAGAGGG+TGG | + | chr4.3:11030244-11030263 | None:intergenic | 45.0% |
| ! | ATAAGGTTTGGGATGTGGTC+AGG | - | chr4.3:11031326-11031345 | MS.gene030903:CDS | 45.0% |
| ! | GAGTGATGGTTGGATTGGAT+GGG | - | chr4.3:11031139-11031158 | MS.gene030903:CDS | 45.0% |
| ! | GTGAGTTTAGCTCAGTTGGT+TGG | - | chr4.3:11028929-11028948 | MS.gene030903:CDS | 45.0% |
| ! | GTTTTGTCGTATGCTGTCTC+TGG | - | chr4.3:11028408-11028427 | MS.gene030903:CDS | 45.0% |
| ! | TAAGGTTTGGGATGTGGTCA+GGG | - | chr4.3:11031327-11031346 | MS.gene030903:CDS | 45.0% |
| ! | TAGTTCTGTTGGATGGGGAT+GGG | - | chr4.3:11030722-11030741 | MS.gene030903:intron | 45.0% |
| ! | TGAGTGATGGTTGGATTGGA+TGG | - | chr4.3:11031138-11031157 | MS.gene030903:CDS | 45.0% |
| ! | TTCCGGCATTTTCGTTCTCA+CGG | - | chr4.3:11028350-11028369 | MS.gene030903:CDS | 45.0% |
| ! | TTTGCTCCTTTTGGTACCAG+AGG | - | chr4.3:11030480-11030499 | MS.gene030903:intron | 45.0% |
| !! | AAAGGTACCCCCCAAACTTT+AGG | + | chr4.3:11031233-11031252 | None:intergenic | 45.0% |
| !! | CCATTGTGGCTTTTAGGAAC+CGG | - | chr4.3:11031173-11031192 | MS.gene030903:CDS | 45.0% |
| !! | GTTGCATTGGGAGCATTGAA+GGG | - | chr4.3:11030756-11030775 | MS.gene030903:intron | 45.0% |
| !! | TGAAGCATAGTTTTCGGGGT+TGG | + | chr4.3:11030460-11030479 | None:intergenic | 45.0% |
| !! | TGTAGCATTCAAAGGTGTCC+CGG | + | chr4.3:11030889-11030908 | None:intergenic | 45.0% |
| !! | TGTTGCATTGGGAGCATTGA+AGG | - | chr4.3:11030755-11030774 | MS.gene030903:intron | 45.0% |
| !! | TTAGTTCTGTTGGATGGGGA+TGG | - | chr4.3:11030721-11030740 | MS.gene030903:intron | 45.0% |
| !!! | GCCAGGGTTTTTAGTTTCCT+CGG | + | chr4.3:11030571-11030590 | None:intergenic | 45.0% |
| !!! | TATAAAATAATTTACATTTT+TGG | - | chr4.3:11029735-11029754 | MS.gene030903:intron | 5.0% |
| AAACCAAGACCGCCAGAAAG+GGG | + | chr4.3:11029138-11029157 | None:intergenic | 50.0% | |
| ACCCGTGAGAACGAAAATGC+CGG | + | chr4.3:11028355-11028374 | None:intergenic | 50.0% | |
| CAAAACCAAGACCGCCAGAA+AGG | + | chr4.3:11029140-11029159 | None:intergenic | 50.0% | |
| CCAACTGAGCTAAACTCACG+AGG | + | chr4.3:11028928-11028947 | None:intergenic | 50.0% | |
| CCAATAGGAATGTCTCTGCC+AGG | + | chr4.3:11030588-11030607 | None:intergenic | 50.0% | |
| CCGGTTCCTAAAAGCCACAA+TGG | + | chr4.3:11031176-11031195 | None:intergenic | 50.0% | |
| CCTGGCAGAGACATTCCTAT+TGG | - | chr4.3:11030585-11030604 | MS.gene030903:intron | 50.0% | |
| CTGTTACACTGAGTTCGCTG+TGG | - | chr4.3:11028455-11028474 | MS.gene030903:CDS | 50.0% | |
| GCATACGACAAAACAACGGC+AGG | + | chr4.3:11028402-11028421 | None:intergenic | 50.0% | |
| GCCGAGGAAACTAAAAACCC+TGG | - | chr4.3:11030567-11030586 | MS.gene030903:intron | 50.0% | |
| GTACTCACATGATGCCTCCT+TGG | - | chr4.3:11030841-11030860 | MS.gene030903:intron | 50.0% | |
| GTTGCAGAGGGTGGCAAAAT+AGG | + | chr4.3:11030235-11030254 | None:intergenic | 50.0% | |
| TTTGTGGCCTTCATAGCTGC+TGG | - | chr4.3:11030153-11030172 | MS.gene030903:intron | 50.0% | |
| ! | CCTCGTGAGTTTAGCTCAGT+TGG | - | chr4.3:11028925-11028944 | MS.gene030903:CDS | 50.0% |
| ! | GGGAATGACGACCGTTTTGT+TGG | - | chr4.3:11030776-11030795 | MS.gene030903:intron | 50.0% |
| ! | TCAGCGCCATTGTGGCTTTT+AGG | - | chr4.3:11031167-11031186 | MS.gene030903:CDS | 50.0% |
| ! | TCCGGCATTTTCGTTCTCAC+GGG | - | chr4.3:11028351-11028370 | MS.gene030903:CDS | 50.0% |
| !! | TTGTGGCTTTTAGGAACCGG+AGG | - | chr4.3:11031176-11031195 | MS.gene030903:CDS | 50.0% |
| !! | TTTCGGGGTTGGCGTTGATT+AGG | + | chr4.3:11030449-11030468 | None:intergenic | 50.0% |
| AAGGGTGGCGATGGCTATGA+GGG | + | chr4.3:11030337-11030356 | None:intergenic | 55.0% | |
| GAAAATGCCGGAACCGACGA+CGG | + | chr4.3:11028343-11028362 | None:intergenic | 55.0% | |
| GCAGAGGGTGGCAAAATAGG+AGG | + | chr4.3:11030232-11030251 | None:intergenic | 55.0% | |
| GCTGTGGAAATTCCTGTCGC+AGG | - | chr4.3:11028471-11028490 | MS.gene030903:CDS | 55.0% | |
| GGAGGTCCATGATCGAGCTA+CGG | + | chr4.3:11030214-11030233 | None:intergenic | 55.0% | |
| GGTGCTTAAGACTGCAAGGG+TGG | + | chr4.3:11030352-11030371 | None:intergenic | 55.0% | |
| TAAGACTGCAAGGGTGGCGA+TGG | + | chr4.3:11030346-11030365 | None:intergenic | 55.0% | |
| TGCAGTGTCAACTATGGCCG+AGG | - | chr4.3:11030551-11030570 | MS.gene030903:intron | 55.0% | |
| ! | GGGCATTTTCAGCGCCATTG+TGG | - | chr4.3:11031159-11031178 | MS.gene030903:CDS | 55.0% |
| !! | GGGGGGTACCTTTAGTTCCT+TGG | - | chr4.3:11031240-11031259 | MS.gene030903:CDS | 55.0% |
| CAAGGGTGGCGATGGCTATG+AGG | + | chr4.3:11030338-11030357 | None:intergenic | 60.0% | |
| CACCTGTCTCCCCTTTCTGG+CGG | - | chr4.3:11029126-11029145 | MS.gene030903:CDS | 60.0% | |
| CACGGGTCTTGAAGCTCGTG+AGG | - | chr4.3:11028368-11028387 | MS.gene030903:CDS | 60.0% | |
| CAGCAGCCGTAGCTCGATCA+TGG | - | chr4.3:11030205-11030224 | MS.gene030903:intron | 60.0% | |
| CTTGAAGCTCGTGAGGAGGC+TGG | - | chr4.3:11028375-11028394 | MS.gene030903:CDS | 60.0% | |
| GCCAGAAAGGGGAGACAGGT+GGG | + | chr4.3:11029127-11029146 | None:intergenic | 60.0% | |
| GGGTCTTGAAGCTCGTGAGG+AGG | - | chr4.3:11028371-11028390 | MS.gene030903:CDS | 60.0% | |
| TCCCACCTGTCTCCCCTTTC+TGG | - | chr4.3:11029123-11029142 | MS.gene030903:CDS | 60.0% | |
| ! | TCTCCCCTTTCTGGCGGTCT+TGG | - | chr4.3:11029132-11029151 | MS.gene030903:CDS | 60.0% |
| CGCCAGAAAGGGGAGACAGG+TGG | + | chr4.3:11029128-11029147 | None:intergenic | 65.0% | |
| GACCGCCAGAAAGGGGAGAC+AGG | + | chr4.3:11029131-11029150 | None:intergenic | 65.0% | |
| TTCGGAATCGGCGCCGTCGT+CGG | - | chr4.3:11028327-11028346 | MS.gene030903:CDS | 65.0% | |
| !! | ATCGGCGCCGTCGTCGGTTC+CGG | - | chr4.3:11028333-11028352 | MS.gene030903:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 11028102 | 11031484 | 11028102 | ID=MS.gene030903 |
| chr4.3 | mRNA | 11028102 | 11031484 | 11028102 | ID=MS.gene030903.t1;Parent=MS.gene030903 |
| chr4.3 | exon | 11031094 | 11031484 | 11031094 | ID=MS.gene030903.t1.exon1;Parent=MS.gene030903.t1 |
| chr4.3 | CDS | 11031094 | 11031484 | 11031094 | ID=cds.MS.gene030903.t1;Parent=MS.gene030903.t1 |
| chr4.3 | exon | 11028102 | 11029471 | 11028102 | ID=MS.gene030903.t1.exon2;Parent=MS.gene030903.t1 |
| chr4.3 | CDS | 11028102 | 11029471 | 11028102 | ID=cds.MS.gene030903.t1;Parent=MS.gene030903.t1 |
| Gene Sequence |
| Protein sequence |
