AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041367

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041367.t1 MTR_2g035430 98.308 591 10 0 1 591 1 591 0.0 1201
MS.gene041367.t1 MTR_8g461380 62.366 558 209 1 14 571 21 577 0.0 696
MS.gene041367.t1 MTR_8g089320 57.043 575 247 0 13 587 13 587 0.0 681
MS.gene041367.t1 MTR_1g030660 57.041 561 236 2 28 584 23 582 0.0 676
MS.gene041367.t1 MTR_8g089360 57.603 559 236 1 20 578 8 565 0.0 668
MS.gene041367.t1 MTR_8g089360 57.603 559 236 1 20 578 25 582 0.0 667
MS.gene041367.t1 MTR_8g089340 56.136 440 192 1 149 587 1 440 3.09e-166 481
MS.gene041367.t1 MTR_1g111740 41.361 573 318 5 28 585 6 575 4.92e-148 439
MS.gene041367.t1 MTR_4g099270 41.399 529 297 5 60 579 10 534 4.40e-127 385
MS.gene041367.t1 MTR_4g099270 42.820 383 215 2 34 412 5 387 2.84e-99 308
MS.gene041367.t1 MTR_4g099270 39.671 426 244 5 163 579 1 422 1.15e-93 295
MS.gene041367.t1 MTR_6g034535 59.912 227 83 2 361 580 89 314 2.33e-84 266
MS.gene041367.t1 MTR_6g034535 39.604 101 36 1 98 198 19 94 3.29e-13 71.2
MS.gene041367.t1 MTR_4g099270 42.053 302 171 2 34 331 5 306 6.64e-72 233
MS.gene041367.t1 MTR_6g027630 33.412 422 269 6 34 446 6 424 4.59e-69 234
MS.gene041367.t1 MTR_6g027630 33.412 422 269 6 34 446 6 424 1.30e-68 234
MS.gene041367.t1 MTR_6g027660 31.754 422 275 4 32 446 10 425 4.84e-67 230
MS.gene041367.t1 MTR_6g027680 31.090 431 283 4 24 446 3 427 1.05e-66 228
MS.gene041367.t1 MTR_7g086610 31.884 414 262 4 43 446 10 413 2.09e-66 228
MS.gene041367.t1 MTR_7g007850 31.021 519 342 10 65 572 42 555 2.37e-66 226
MS.gene041367.t1 MTR_7g086510 31.472 394 263 3 60 446 26 419 6.30e-65 224
MS.gene041367.t1 MTR_6g027650 31.190 420 274 4 34 446 6 417 3.48e-64 222
MS.gene041367.t1 MTR_7g007850 29.250 547 323 10 65 561 42 574 1.80e-63 219
MS.gene041367.t1 MTR_7g007850 33.249 397 256 7 65 455 42 435 9.66e-58 201
MS.gene041367.t1 MTR_7g007850 33.249 397 256 7 65 455 42 435 2.06e-57 202
MS.gene041367.t1 MTR_6g027630 33.136 338 217 4 117 446 3 339 4.47e-53 190
MS.gene041367.t1 MTR_8g089342 65.812 117 40 0 22 138 23 139 4.32e-49 167
MS.gene041367.t1 MTR_6g027670 31.646 158 108 0 289 446 1 158 2.24e-24 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041367.t1 AT2G34960 73.619 561 146 2 13 572 5 564 0.0 862
MS.gene041367.t1 AT4G21120 61.498 574 219 1 1 574 1 572 0.0 737
MS.gene041367.t1 AT1G17120 61.879 564 214 1 8 571 17 579 0.0 719
MS.gene041367.t1 AT4G21120 59.953 422 169 0 153 574 1 422 0.0 532
MS.gene041367.t1 AT3G10600 42.984 563 287 6 27 567 11 561 1.84e-143 428
MS.gene041367.t1 AT5G04770 41.772 553 302 5 30 567 15 562 1.07e-142 426
MS.gene041367.t1 AT5G04770 43.411 387 209 2 30 406 15 401 1.87e-104 322
MS.gene041367.t1 AT3G10600 42.155 427 213 6 163 567 1 415 7.35e-104 321
MS.gene041367.t1 AT5G04770 41.190 420 227 5 163 567 1 415 5.09e-98 306
MS.gene041367.t1 AT3G03720 26.878 599 363 12 54 585 6 596 4.30e-68 232
MS.gene041367.t1 AT5G36940 32.918 401 258 3 55 448 16 412 8.31e-68 231
MS.gene041367.t1 AT1G05940 28.288 555 377 9 41 577 14 565 4.00e-64 221
MS.gene041367.t1 AT1G58030 30.097 412 277 3 42 446 14 421 1.52e-63 221
MS.gene041367.t1 AT1G05940 28.180 511 347 8 41 534 14 521 1.03e-56 199
MS.gene041367.t1 AT1G05940 28.918 453 306 6 41 478 14 465 2.47e-56 198
MS.gene041367.t1 AT1G05940 27.438 441 304 6 151 577 9 447 1.52e-45 167

Find 96 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGGGAATTTCAGCTTAT+TGG 0.124964 2.1:+55328834 MS.gene041367:CDS
TCAATTGGTGGGACCTAATT+TGG 0.164490 2.1:+55327649 MS.gene041367:CDS
AATGGGAATTTCAGCTTATT+GGG 0.215067 2.1:+55328835 MS.gene041367:CDS
GATGATATCCATTGCACTTT+TGG 0.225184 2.1:+55328727 MS.gene041367:CDS
TTTCAGCTTATTGGGGATTA+AGG 0.251625 2.1:+55328843 MS.gene041367:CDS
CACATCCAAGCTAGTGAAAA+AGG 0.261858 2.1:-55328663 None:intergenic
AGTCGCCTAATTCAATTCTT+AGG 0.284521 2.1:-55327854 None:intergenic
GCAAAATATGTAGTAGCTTT+TGG 0.291066 2.1:+55328467 MS.gene041367:CDS
CCCTATAGCAGTTGGTGTTC+TGG 0.294221 2.1:+55328040 MS.gene041367:CDS
TTCAGAAAGTTGGAATGAAT+TGG 0.299542 2.1:+55328444 MS.gene041367:CDS
CTCATTGTTGCTTCTTCAAT+GGG 0.303127 2.1:+55328818 MS.gene041367:CDS
GTAAGAAGGTATTATGTTAG+AGG 0.322508 2.1:+55328749 MS.gene041367:CDS
GCAATTCTTTACTTTGCATA+TGG 0.325124 2.1:+55328242 MS.gene041367:CDS
TTGATTCGAAGCGAATCTTT+TGG 0.333880 2.1:-55327981 None:intergenic
GATATACCAATCGGCTTGAT+TGG 0.334574 2.1:+55328317 MS.gene041367:CDS
AGCAAAGGAAGCCAAAGTTT+TGG 0.341150 2.1:+55328945 MS.gene041367:CDS
CACAGTTATCTATTGCTTGA+TGG 0.343574 2.1:+55328355 MS.gene041367:CDS
TCCTACCTAAGAATTGAATT+AGG 0.344020 2.1:+55327849 MS.gene041367:CDS
ATCATATTCGTAATCATTGC+AGG 0.347703 2.1:+55328146 MS.gene041367:CDS
CTCTTTCACAAACATGGTTA+AGG 0.349691 2.1:+55327538 MS.gene041367:CDS
CATCTCCAATAGCTTCTTTG+TGG 0.353269 2.1:-55327456 None:intergenic
TCTCATTGTTGCTTCTTCAA+TGG 0.355395 2.1:+55328817 MS.gene041367:CDS
GACCTAATTTGGTTTGGCTT+TGG 0.371810 2.1:+55327660 MS.gene041367:CDS
TCAGTTGCATTTCAGAAAGT+TGG 0.376841 2.1:+55328434 MS.gene041367:CDS
CACCAAAGCCAAACCAAATT+AGG 0.385473 2.1:-55327662 None:intergenic
ACCAGAACACCAACTGCTAT+AGG 0.387682 2.1:-55328041 None:intergenic
CTCAGTGGCATCGTCTGATC+TGG 0.388850 2.1:-55327580 None:intergenic
TCAGAAAGTTGGAATGAATT+GGG 0.390454 2.1:+55328445 MS.gene041367:CDS
TTTGGCTTTGGTGCAGTGAT+TGG 0.393125 2.1:+55327672 MS.gene041367:CDS
GCAGGAATCTTTGTGCTAAC+TGG 0.395596 2.1:+55327696 MS.gene041367:CDS
TTTGTTGCAATTGACAAAGA+TGG 0.406903 2.1:-55328992 None:intergenic
AAGCCGATTGGTATATCCTT+TGG 0.407727 2.1:-55328311 None:intergenic
ATCAGAAGTGTAGCATTTAT+CGG 0.409131 2.1:-55328617 None:intergenic
TGGTGGGACCTAATTTGGTT+TGG 0.409509 2.1:+55327654 MS.gene041367:CDS
GTCTTATCCTATGTAGCTTC+AGG 0.410241 2.1:+55327753 MS.gene041367:CDS
ACACTGTTACTGTTCCTGTT+TGG 0.410710 2.1:+55328885 MS.gene041367:CDS
ACAAACATGGTTAAGGTTCA+AGG 0.416776 2.1:+55327545 MS.gene041367:CDS
AATACACCTTTAACTCCATA+AGG 0.422612 2.1:-55328209 None:intergenic
AGAGAGACTGCTAGGATTGA+AGG 0.423881 2.1:+55329169 MS.gene041367:CDS
CAGCTTTGAAAGGATTCCTC+TGG 0.424940 2.1:-55327498 None:intergenic
ATGAACCACAAAGAAGCTAT+TGG 0.431579 2.1:+55327451 MS.gene041367:CDS
CTTTGAATGGCATCCACAAA+AGG 0.433676 2.1:+55327417 None:intergenic
GGGGAGTTCCACTTGTTCCA+TGG 0.441381 2.1:+55328966 MS.gene041367:CDS
TATTGGGGATTAAGGCCTAA+TGG 0.442064 2.1:+55328851 MS.gene041367:CDS
GCGCTTGTACATCCGAAAAC+AGG 0.445402 2.1:+55328590 MS.gene041367:CDS
AGTGGAACTCCCCAAAACTT+TGG 0.452180 2.1:-55328956 None:intergenic
CCAGAACACCAACTGCTATA+GGG 0.459155 2.1:-55328040 None:intergenic
TTAAGGCCTAATGGTTGGAT+TGG 0.460463 2.1:+55328860 MS.gene041367:CDS
GCATTCAAGAAGTATGTTAC+CGG 0.465899 2.1:-55327895 None:intergenic
CCGATTGGTATATCCTTTGG+TGG 0.474482 2.1:-55328308 None:intergenic
ATTCTTTACTTTGCATATGG+AGG 0.482566 2.1:+55328245 MS.gene041367:CDS
CTTCTGCTCTTTCACAAACA+TGG 0.484220 2.1:+55327532 MS.gene041367:CDS
GCTGTTGAAGTTCCAGCTGC+AGG 0.487505 2.1:+55327816 MS.gene041367:CDS
TGAAATTCCTGAAGCTACAT+AGG 0.493757 2.1:-55327760 None:intergenic
GTTCGCACATGATTCCTCCT+TGG 0.495552 2.1:+55328564 MS.gene041367:CDS
CAGAGGAATCCTTTCAAAGC+TGG 0.496146 2.1:+55327499 MS.gene041367:CDS
TTCTTTACTTTGCATATGGA+GGG 0.502896 2.1:+55328246 MS.gene041367:CDS
GAAAATGAACCACCTGCAGC+TGG 0.507050 2.1:-55327828 None:intergenic
AAAGCACACCATCTCAAAGA+TGG 0.514487 2.1:+55328002 MS.gene041367:CDS
GGGGATTAAGGCCTAATGGT+TGG 0.518202 2.1:+55328855 MS.gene041367:CDS
AAATACACAGATATAGATAC+AGG 0.520624 2.1:+55328401 MS.gene041367:CDS
TTTGGTGCAGTGATTGGTGC+AGG 0.520646 2.1:+55327678 MS.gene041367:CDS
GTGCAGCAGTATCAAGATCA+TGG 0.523129 2.1:+55327928 MS.gene041367:CDS
GCTTCTCAATTGGATTGCAT+CGG 0.527593 2.1:+55328106 MS.gene041367:CDS
CCACCAAAGGATATACCAAT+CGG 0.532745 2.1:+55328308 MS.gene041367:CDS
GTTTGACAGTCTTGCAACCA+TGG 0.540242 2.1:+55328268 MS.gene041367:CDS
GTGTATCCAATCCAACCATT+AGG 0.541391 2.1:-55328866 None:intergenic
CACAAAGAAGCTATTGGAGA+TGG 0.542271 2.1:+55327457 MS.gene041367:CDS
TTACTAGACCCTATAGCAGT+TGG 0.542343 2.1:+55328032 MS.gene041367:CDS
ATACTTCTTGAATGCGTACT+CGG 0.547711 2.1:+55327903 MS.gene041367:CDS
TTTGTTGCTTTCATAGCAGC+CGG 0.549975 2.1:+55327876 MS.gene041367:CDS
TTTAGTCGGAAGATTAGGAC+AGG 0.552555 2.1:+55328517 MS.gene041367:CDS
ATAGTTGTTCCAGCTTTGAA+AGG 0.559794 2.1:-55327508 None:intergenic
AATTGTATCCATCTTTGAGA+TGG 0.571253 2.1:-55328010 None:intergenic
CAAGAAGCTCATAACCATGC+AGG 0.571449 2.1:+55327720 MS.gene041367:CDS
CCTTCTTACCAAAAGTGCAA+TGG 0.572193 2.1:-55328735 None:intergenic
ATTGACAAAGATGGCAACCA+TGG 0.573355 2.1:-55328983 None:intergenic
GATGGCAACCATGGAACAAG+TGG 0.573911 2.1:-55328974 None:intergenic
AATATGCACTTTGATAATGT+TGG 0.578928 2.1:+55329063 MS.gene041367:CDS
ATGGGAATTTCAGCTTATTG+GGG 0.579215 2.1:+55328836 MS.gene041367:CDS
GCCTAATTCAATTCTTAGGT+AGG 0.579227 2.1:-55327850 None:intergenic
TGAGTCACAGAGAGACTGCT+AGG 0.580292 2.1:+55329161 MS.gene041367:CDS
GAGAGACTGCTAGGATTGAA+GGG 0.588598 2.1:+55329170 MS.gene041367:CDS
AATGGCATCCACAAAAGGCA+TGG 0.591331 2.1:+55327422 None:intergenic
AGACTATTGCTGCTCCTGCA+TGG 0.592496 2.1:-55327734 None:intergenic
CTTAAGCTCATGTGTCTCAG+TGG 0.594867 2.1:-55327595 None:intergenic
CATGGCTCATCAACAAGAGA+AGG 0.601649 2.1:+55329123 MS.gene041367:CDS
ATTGCATCGGCAGTCAACAT+AGG 0.606531 2.1:+55328119 MS.gene041367:CDS
TCATATTCGTAATCATTGCA+GGG 0.613623 2.1:+55328147 MS.gene041367:CDS
ATTGAACCAATCAAGCCGAT+TGG 0.614297 2.1:-55328323 None:intergenic
TAAACAAGATTTCTTGCCAG+AGG 0.615202 2.1:+55327482 MS.gene041367:CDS
GTTGAAGTTCCAGCTGCAGG+TGG 0.622133 2.1:+55327819 MS.gene041367:CDS
TCTACATTCAACTTATGACA+TGG 0.632436 2.1:+55329105 MS.gene041367:CDS
GGATGTACAAGCGCGAACCA+AGG 0.667921 2.1:-55328581 None:intergenic
TGTACAAGCGCGAACCAAGG+AGG 0.678479 2.1:-55328578 None:intergenic
GCTGATCATTGCAATCATTG+CGG 0.733326 2.1:-55328069 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAAAAAATGTCTCAAT+TGG + chr2.1:55327634-55327653 MS.gene041367:CDS 20.0%
!!! TATGAAGCTTTTATAAGATT+TGG + chr2.1:55329040-55329059 MS.gene041367:CDS 20.0%
! AAATACACAGATATAGATAC+AGG + chr2.1:55328401-55328420 MS.gene041367:CDS 25.0%
! TTAACTCCATAAGGTAAAAA+AGG - chr2.1:55328203-55328222 None:intergenic 25.0%
!! GCAACAAATATTTTTCTCAT+GGG + chr2.1:55329007-55329026 MS.gene041367:CDS 25.0%
!! TGCAACAAATATTTTTCTCA+TGG + chr2.1:55329006-55329025 MS.gene041367:CDS 25.0%
!! TTGGTTTACTATGTTTTCTT+TGG + chr2.1:55329082-55329101 MS.gene041367:CDS 25.0%
!! TTTTTACCTTATGGAGTTAA+AGG + chr2.1:55328203-55328222 MS.gene041367:CDS 25.0%
!!! AATATGCACTTTGATAATGT+TGG + chr2.1:55329063-55329082 MS.gene041367:CDS 25.0%
!!! TTTGGTTTTTTTCAACTCTT+GGG + chr2.1:55328903-55328922 MS.gene041367:CDS 25.0%
AATACACCTTTAACTCCATA+AGG - chr2.1:55328212-55328231 None:intergenic 30.0%
AATGGGAATTTCAGCTTATT+GGG + chr2.1:55328835-55328854 MS.gene041367:CDS 30.0%
AGAAACTAAAAATCCACCAA+AGG + chr2.1:55328295-55328314 MS.gene041367:CDS 30.0%
AGAGTTGAAAAAAACCAAAC+AGG - chr2.1:55328902-55328921 None:intergenic 30.0%
ATCATATTCGTAATCATTGC+AGG + chr2.1:55328146-55328165 MS.gene041367:CDS 30.0%
ATTCTTTACTTTGCATATGG+AGG + chr2.1:55328245-55328264 MS.gene041367:CDS 30.0%
GAAAAAATGTCTCAATTGGT+GGG + chr2.1:55327638-55327657 MS.gene041367:CDS 30.0%
GCAATTCTTTACTTTGCATA+TGG + chr2.1:55328242-55328261 MS.gene041367:CDS 30.0%
TCAGAAAGTTGGAATGAATT+GGG + chr2.1:55328445-55328464 MS.gene041367:CDS 30.0%
TCATATTCGTAATCATTGCA+GGG + chr2.1:55328147-55328166 MS.gene041367:CDS 30.0%
TCCTACCTAAGAATTGAATT+AGG + chr2.1:55327849-55327868 MS.gene041367:CDS 30.0%
TCTACATTCAACTTATGACA+TGG + chr2.1:55329105-55329124 MS.gene041367:CDS 30.0%
TGAAAAAATGTCTCAATTGG+TGG + chr2.1:55327637-55327656 MS.gene041367:CDS 30.0%
TTCAGAAAGTTGGAATGAAT+TGG + chr2.1:55328444-55328463 MS.gene041367:CDS 30.0%
TTCTTTACTTTGCATATGGA+GGG + chr2.1:55328246-55328265 MS.gene041367:CDS 30.0%
TTTGTTGCAATTGACAAAGA+TGG - chr2.1:55328995-55329014 None:intergenic 30.0%
! AATCTTTTGGACGATTCAAA+AGG - chr2.1:55327971-55327990 None:intergenic 30.0%
! AATTGTATCCATCTTTGAGA+TGG - chr2.1:55328013-55328032 None:intergenic 30.0%
! ATCAGAAGTGTAGCATTTAT+CGG - chr2.1:55328620-55328639 None:intergenic 30.0%
! GCAAAATATGTAGTAGCTTT+TGG + chr2.1:55328467-55328486 MS.gene041367:CDS 30.0%
! TATTTTTCTCATGGGATCTT+TGG + chr2.1:55329015-55329034 MS.gene041367:CDS 30.0%
!! GTAAGAAGGTATTATGTTAG+AGG + chr2.1:55328749-55328768 MS.gene041367:CDS 30.0%
!!! ATTTTTAGTTTCTTCAGCCA+TGG - chr2.1:55328288-55328307 None:intergenic 30.0%
!!! CATATTTTTTGACTCAGCAA+AGG + chr2.1:55328930-55328949 MS.gene041367:CDS 30.0%
!!! GTTTGGTTTTTTTCAACTCT+TGG + chr2.1:55328902-55328921 MS.gene041367:CDS 30.0%
!!! TTGACACCTTTTTTACCTTA+TGG + chr2.1:55328194-55328213 MS.gene041367:CDS 30.0%
ACAAACATGGTTAAGGTTCA+AGG + chr2.1:55327545-55327564 MS.gene041367:CDS 35.0%
AGTCGCCTAATTCAATTCTT+AGG - chr2.1:55327857-55327876 None:intergenic 35.0%
ATACTTCTTGAATGCGTACT+CGG + chr2.1:55327903-55327922 MS.gene041367:CDS 35.0%
ATGAACCACAAAGAAGCTAT+TGG + chr2.1:55327451-55327470 MS.gene041367:CDS 35.0%
ATGGGAATTTCAGCTTATTG+GGG + chr2.1:55328836-55328855 MS.gene041367:CDS 35.0%
CAATGGGAATTTCAGCTTAT+TGG + chr2.1:55328834-55328853 MS.gene041367:CDS 35.0%
CACAGTTATCTATTGCTTGA+TGG + chr2.1:55328355-55328374 MS.gene041367:CDS 35.0%
CTCTTTCACAAACATGGTTA+AGG + chr2.1:55327538-55327557 MS.gene041367:CDS 35.0%
GAAAAACTTCGCTTCTCAAT+TGG + chr2.1:55328096-55328115 MS.gene041367:CDS 35.0%
GCCTAATTCAATTCTTAGGT+AGG - chr2.1:55327853-55327872 None:intergenic 35.0%
TAAACAAGATTTCTTGCCAG+AGG + chr2.1:55327482-55327501 MS.gene041367:CDS 35.0%
TCAGTTGCATTTCAGAAAGT+TGG + chr2.1:55328434-55328453 MS.gene041367:CDS 35.0%
TGAAATTCCTGAAGCTACAT+AGG - chr2.1:55327763-55327782 None:intergenic 35.0%
TTTCAGCTTATTGGGGATTA+AGG + chr2.1:55328843-55328862 MS.gene041367:CDS 35.0%
! ATGACAACAGTGCTTTTAGT+CGG + chr2.1:55328503-55328522 MS.gene041367:CDS 35.0%
! CTCATTGTTGCTTCTTCAAT+GGG + chr2.1:55328818-55328837 MS.gene041367:CDS 35.0%
! GATGATATCCATTGCACTTT+TGG + chr2.1:55328727-55328746 MS.gene041367:CDS 35.0%
! GCATTCAAGAAGTATGTTAC+CGG - chr2.1:55327898-55327917 None:intergenic 35.0%
! TCTCATTGTTGCTTCTTCAA+TGG + chr2.1:55328817-55328836 MS.gene041367:CDS 35.0%
!! ATAGTTGTTCCAGCTTTGAA+AGG - chr2.1:55327511-55327530 None:intergenic 35.0%
!! TTGATTCGAAGCGAATCTTT+TGG - chr2.1:55327984-55328003 None:intergenic 35.0%
!! TTTATCGGTGTTCCTGTTTT+CGG - chr2.1:55328605-55328624 None:intergenic 35.0%
AAAGCACACCATCTCAAAGA+TGG + chr2.1:55328002-55328021 MS.gene041367:CDS 40.0%
AAGCCGATTGGTATATCCTT+TGG - chr2.1:55328314-55328333 None:intergenic 40.0%
ACACTGTTACTGTTCCTGTT+TGG + chr2.1:55328885-55328904 MS.gene041367:CDS 40.0%
ATTGAACCAATCAAGCCGAT+TGG - chr2.1:55328326-55328345 None:intergenic 40.0%
ATTGACAAAGATGGCAACCA+TGG - chr2.1:55328986-55329005 None:intergenic 40.0%
CACAAAGAAGCTATTGGAGA+TGG + chr2.1:55327457-55327476 MS.gene041367:CDS 40.0%
CACATCCAAGCTAGTGAAAA+AGG - chr2.1:55328666-55328685 None:intergenic 40.0%
CACCAAAGCCAAACCAAATT+AGG - chr2.1:55327665-55327684 None:intergenic 40.0%
CATCTCCAATAGCTTCTTTG+TGG - chr2.1:55327459-55327478 None:intergenic 40.0%
CCACCAAAGGATATACCAAT+CGG + chr2.1:55328308-55328327 MS.gene041367:CDS 40.0%
CTTCTGCTCTTTCACAAACA+TGG + chr2.1:55327532-55327551 MS.gene041367:CDS 40.0%
GCTGATCATTGCAATCATTG+CGG - chr2.1:55328072-55328091 None:intergenic 40.0%
GCTTCTCAATTGGATTGCAT+CGG + chr2.1:55328106-55328125 MS.gene041367:CDS 40.0%
GTCTTATCCTATGTAGCTTC+AGG + chr2.1:55327753-55327772 MS.gene041367:CDS 40.0%
GTGTATCCAATCCAACCATT+AGG - chr2.1:55328869-55328888 None:intergenic 40.0%
TATTGGGGATTAAGGCCTAA+TGG + chr2.1:55328851-55328870 MS.gene041367:CDS 40.0%
TCAATTGGTGGGACCTAATT+TGG + chr2.1:55327649-55327668 MS.gene041367:CDS 40.0%
TTAAGGCCTAATGGTTGGAT+TGG + chr2.1:55328860-55328879 MS.gene041367:CDS 40.0%
TTACTAGACCCTATAGCAGT+TGG + chr2.1:55328032-55328051 MS.gene041367:CDS 40.0%
TTTAGTCGGAAGATTAGGAC+AGG + chr2.1:55328517-55328536 MS.gene041367:CDS 40.0%
! AGCAAAGGAAGCCAAAGTTT+TGG + chr2.1:55328945-55328964 MS.gene041367:CDS 40.0%
! ATTGTCATCCATGCCTTTTG+TGG - chr2.1:55327433-55327452 None:intergenic 40.0%
! CAAAGGAAGCCAAAGTTTTG+GGG + chr2.1:55328947-55328966 MS.gene041367:CDS 40.0%
! CCATTGCACTTTTGGTAAGA+AGG + chr2.1:55328735-55328754 MS.gene041367:CDS 40.0%
! CCTTCTTACCAAAAGTGCAA+TGG - chr2.1:55328738-55328757 None:intergenic 40.0%
! GCAAAGGAAGCCAAAGTTTT+GGG + chr2.1:55328946-55328965 MS.gene041367:CDS 40.0%
! GTGCTTTTAGTCGGAAGATT+AGG + chr2.1:55328512-55328531 MS.gene041367:CDS 40.0%
!! AGTAGCTTTTGGTGCATTGA+AGG + chr2.1:55328478-55328497 MS.gene041367:CDS 40.0%
!! CATAGCCTTTTTCACTAGCT+TGG + chr2.1:55328658-55328677 MS.gene041367:CDS 40.0%
!! GACCTAATTTGGTTTGGCTT+TGG + chr2.1:55327660-55327679 MS.gene041367:CDS 40.0%
!! GATATACCAATCGGCTTGAT+TGG + chr2.1:55328317-55328336 MS.gene041367:CDS 40.0%
!! GTAGCTTTTGGTGCATTGAA+GGG + chr2.1:55328479-55328498 MS.gene041367:CDS 40.0%
!! TTTGTTGCTTTCATAGCAGC+CGG + chr2.1:55327876-55327895 MS.gene041367:CDS 40.0%
ACCAGAACACCAACTGCTAT+AGG - chr2.1:55328044-55328063 None:intergenic 45.0%
AGAGAGACTGCTAGGATTGA+AGG + chr2.1:55329169-55329188 MS.gene041367:CDS 45.0%
AGTGGAACTCCCCAAAACTT+TGG - chr2.1:55328959-55328978 None:intergenic 45.0%
CAAGAAGCTCATAACCATGC+AGG + chr2.1:55327720-55327739 MS.gene041367:CDS 45.0%
CAGAGGAATCCTTTCAAAGC+TGG + chr2.1:55327499-55327518 MS.gene041367:CDS 45.0%
CATGGCTCATCAACAAGAGA+AGG + chr2.1:55329123-55329142 MS.gene041367:CDS 45.0%
CCAGAACACCAACTGCTATA+GGG - chr2.1:55328043-55328062 None:intergenic 45.0%
CCGATTGGTATATCCTTTGG+TGG - chr2.1:55328311-55328330 None:intergenic 45.0%
CTTAAGCTCATGTGTCTCAG+TGG - chr2.1:55327598-55327617 None:intergenic 45.0%
GAGAGACTGCTAGGATTGAA+GGG + chr2.1:55329170-55329189 MS.gene041367:CDS 45.0%
GCAGGAATCTTTGTGCTAAC+TGG + chr2.1:55327696-55327715 MS.gene041367:CDS 45.0%
GTGCAGCAGTATCAAGATCA+TGG + chr2.1:55327928-55327947 MS.gene041367:CDS 45.0%
GTTTGACAGTCTTGCAACCA+TGG + chr2.1:55328268-55328287 MS.gene041367:CDS 45.0%
TGGTGGGACCTAATTTGGTT+TGG + chr2.1:55327654-55327673 MS.gene041367:CDS 45.0%
! ATTGCATCGGCAGTCAACAT+AGG + chr2.1:55328119-55328138 MS.gene041367:CDS 45.0%
!! CAGCTTTGAAAGGATTCCTC+TGG - chr2.1:55327501-55327520 None:intergenic 45.0%
!! TTTGGCTTTGGTGCAGTGAT+TGG + chr2.1:55327672-55327691 MS.gene041367:CDS 45.0%
AGACTATTGCTGCTCCTGCA+TGG - chr2.1:55327737-55327756 None:intergenic 50.0%
GAAAATGAACCACCTGCAGC+TGG - chr2.1:55327831-55327850 None:intergenic 50.0%
GATGGCAACCATGGAACAAG+TGG - chr2.1:55328977-55328996 None:intergenic 50.0%
GCGCTTGTACATCCGAAAAC+AGG + chr2.1:55328590-55328609 MS.gene041367:CDS 50.0%
GGGGATTAAGGCCTAATGGT+TGG + chr2.1:55328855-55328874 MS.gene041367:CDS 50.0%
GTTCGCACATGATTCCTCCT+TGG + chr2.1:55328564-55328583 MS.gene041367:CDS 50.0%
TGAGTCACAGAGAGACTGCT+AGG + chr2.1:55329161-55329180 MS.gene041367:CDS 50.0%
! CCCTATAGCAGTTGGTGTTC+TGG + chr2.1:55328040-55328059 MS.gene041367:CDS 50.0%
! TTTGGTGCAGTGATTGGTGC+AGG + chr2.1:55327678-55327697 MS.gene041367:CDS 50.0%
CTCAGTGGCATCGTCTGATC+TGG - chr2.1:55327583-55327602 None:intergenic 55.0%
GCTGTTGAAGTTCCAGCTGC+AGG + chr2.1:55327816-55327835 MS.gene041367:CDS 55.0%
GGATGTACAAGCGCGAACCA+AGG - chr2.1:55328584-55328603 None:intergenic 55.0%
GGGGAGTTCCACTTGTTCCA+TGG + chr2.1:55328966-55328985 MS.gene041367:CDS 55.0%
GTTGAAGTTCCAGCTGCAGG+TGG + chr2.1:55327819-55327838 MS.gene041367:CDS 55.0%
TGTACAAGCGCGAACCAAGG+AGG - chr2.1:55328581-55328600 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 55327423 55329198 55327423 ID=MS.gene041367
chr2.1 mRNA 55327423 55329198 55327423 ID=MS.gene041367.t1;Parent=MS.gene041367
chr2.1 exon 55327423 55329198 55327423 ID=MS.gene041367.t1.exon1;Parent=MS.gene041367.t1
chr2.1 CDS 55327423 55329198 55327423 ID=cds.MS.gene041367.t1;Parent=MS.gene041367.t1
Gene Sequence

>MS.gene041367

ATGGCATCCACAAAAGGCATGGATGACAATGAACCACAAAGAAGCTATTGGAGATGGAGTAAACAAGATTTCTTGCCAGAGGAATCCTTTCAAAGCTGGAACAACTATGCTTCTGCTCTTTCACAAACATGGTTAAGGTTCAAGGATCGTGTTCAGACCAGATCAGACGATGCCACTGAGACACATGAGCTTAAGAAACAAAGTGAGAATGAAATGAAAAAATGTCTCAATTGGTGGGACCTAATTTGGTTTGGCTTTGGTGCAGTGATTGGTGCAGGAATCTTTGTGCTAACTGGTCAAGAAGCTCATAACCATGCAGGAGCAGCAATAGTCTTATCCTATGTAGCTTCAGGAATTTCAGCAATGCTTTCTGTTTTTTGTTACACAGAATTTGCTGTTGAAGTTCCAGCTGCAGGTGGTTCATTTTCCTACCTAAGAATTGAATTAGGCGACTTTGTTGCTTTCATAGCAGCCGGTAACATACTTCTTGAATGCGTACTCGGAAGTGCAGCAGTATCAAGATCATGGACATCTTACTTCACAAGCCTTTTGAATCGTCCAAAAGATTCGCTTCGAATCAAAGCACACCATCTCAAAGATGGATACAATTTACTAGACCCTATAGCAGTTGGTGTTCTGGTAATTGCCGCAATGATTGCAATGATCAGCACAAGAAAAACTTCGCTTCTCAATTGGATTGCATCGGCAGTCAACATAGGTGTAATCATATTCGTAATCATTGCAGGGTTCTCTCATGCAAATACATCAAACTTGACACCTTTTTTACCTTATGGAGTTAAAGGTGTATTTCAAGCATCTGCAATTCTTTACTTTGCATATGGAGGGTTTGACAGTCTTGCAACCATGGCTGAAGAAACTAAAAATCCACCAAAGGATATACCAATCGGCTTGATTGGTTCAATGTCTGTGATCACAGTTATCTATTGCTTGATGGCACTTTCATTAAGCATGATGCAGAAATACACAGATATAGATACAGGCGCAGCTTTCTCAGTTGCATTTCAGAAAGTTGGAATGAATTGGGCAAAATATGTAGTAGCTTTTGGTGCATTGAAGGGTATGACAACAGTGCTTTTAGTCGGAAGATTAGGACAGGCACGTTATATCGCTCACATCGCACGTTCGCACATGATTCCTCCTTGGTTCGCGCTTGTACATCCGAAAACAGGAACACCGATAAATGCTACACTTCTGATTACAATTTCAAGTGCTTGCATAGCCTTTTTCACTAGCTTGGATGTGTTATCAAGTTTGATATCAGTAAGCACACTTTTCGTTTTCGTGATGATATCCATTGCACTTTTGGTAAGAAGGTATTATGTTAGAGGAGTTACAACAAAAGAGAATCAGTTAAAGCTTGTTGTGTTTTTGATTCTCATTGTTGCTTCTTCAATGGGAATTTCAGCTTATTGGGGATTAAGGCCTAATGGTTGGATTGGATACACTGTTACTGTTCCTGTTTGGTTTTTTTCAACTCTTGGGATGTCATATTTTTTGACTCAGCAAAGGAAGCCAAAGTTTTGGGGAGTTCCACTTGTTCCATGGTTGCCATCTTTGTCAATTGCAACAAATATTTTTCTCATGGGATCTTTGGAATATGAAGCTTTTATAAGATTTGGAATATGCACTTTGATAATGTTGGTTTACTATGTTTTCTTTGGTCTACATTCAACTTATGACATGGCTCATCAACAAGAGAAGGTGCAAACAATCAATGTGAGTCACAGAGAGACTGCTAGGATTGAAGGGCCTTAA
Protein sequence

>MS.gene041367.t1

MASTKGMDDNEPQRSYWRWSKQDFLPEESFQSWNNYASALSQTWLRFKDRVQTRSDDATETHELKKQSENEMKKCLNWWDLIWFGFGAVIGAGIFVLTGQEAHNHAGAAIVLSYVASGISAMLSVFCYTEFAVEVPAAGGSFSYLRIELGDFVAFIAAGNILLECVLGSAAVSRSWTSYFTSLLNRPKDSLRIKAHHLKDGYNLLDPIAVGVLVIAAMIAMISTRKTSLLNWIASAVNIGVIIFVIIAGFSHANTSNLTPFLPYGVKGVFQASAILYFAYGGFDSLATMAEETKNPPKDIPIGLIGSMSVITVIYCLMALSLSMMQKYTDIDTGAAFSVAFQKVGMNWAKYVVAFGALKGMTTVLLVGRLGQARYIAHIARSHMIPPWFALVHPKTGTPINATLLITISSACIAFFTSLDVLSSLISVSTLFVFVMISIALLVRRYYVRGVTTKENQLKLVVFLILIVASSMGISAYWGLRPNGWIGYTVTVPVWFFSTLGMSYFLTQQRKPKFWGVPLVPWLPSLSIATNIFLMGSLEYEAFIRFGICTLIMLVYYVFFGLHSTYDMAHQQEKVQTINVSHRETARIEGP