Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08144.t1 | XP_003624699.1 | 97.2 | 641 | 13 | 1 | 1 | 641 | 1 | 636 | 0.00E+00 | 1197.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08144.t1 | Q8W4K3 | 65.6 | 620 | 188 | 4 | 25 | 641 | 3 | 600 | 3.6e-226 | 786.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08144.t1 | Q2HVB3 | 97.2 | 641 | 13 | 1 | 1 | 641 | 1 | 636 | 0.0e+00 | 1197.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene030907 | MS.gene08144 | PPI |
MS.gene41795 | MS.gene08144 | PPI |
MS.gene030903 | MS.gene08144 | PPI |
MS.gene030906 | MS.gene08144 | PPI |
MS.gene08144 | MS.gene27968 | PPI |
MS.gene58674 | MS.gene08144 | PPI |
MS.gene53497 | MS.gene08144 | PPI |
MS.gene00402 | MS.gene08144 | PPI |
MS.gene057555 | MS.gene08144 | PPI |
MS.gene53496 | MS.gene08144 | PPI |
MS.gene47928 | MS.gene08144 | PPI |
MS.gene08144 | MS.gene27966 | PPI |
MS.gene53499 | MS.gene08144 | PPI |
MS.gene041367 | MS.gene08144 | PPI |
MS.gene47931 | MS.gene08144 | PPI |
MS.gene47297 | MS.gene08144 | PPI |
MS.gene021787 | MS.gene08144 | PPI |
MS.gene042491 | MS.gene08144 | PPI |
MS.gene47930 | MS.gene08144 | PPI |
MS.gene45219 | MS.gene08144 | PPI |
MS.gene08144 | MS.gene97609 | PPI |
MS.gene030905 | MS.gene08144 | PPI |
MS.gene27967 | MS.gene08144 | PPI |
MS.gene08144 | MS.gene073450 | PPI |
MS.gene08144 | MS.gene47929 | PPI |
MS.gene27969 | MS.gene08144 | PPI |
MS.gene49831 | MS.gene08144 | PPI |
MS.gene53498 | MS.gene08144 | PPI |
MS.gene08137 | MS.gene08144 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08144.t1 | MTR_7g086510 | 97.192 | 641 | 13 | 1 | 1 | 641 | 1 | 636 | 0.0 | 1255 |
MS.gene08144.t1 | MTR_7g086610 | 62.764 | 615 | 215 | 3 | 28 | 641 | 17 | 618 | 0.0 | 779 |
MS.gene08144.t1 | MTR_6g027660 | 58.165 | 643 | 245 | 6 | 8 | 641 | 2 | 629 | 0.0 | 744 |
MS.gene08144.t1 | MTR_6g027630 | 58.280 | 628 | 246 | 4 | 10 | 630 | 4 | 622 | 0.0 | 740 |
MS.gene08144.t1 | MTR_6g027650 | 57.843 | 612 | 239 | 4 | 25 | 631 | 18 | 615 | 0.0 | 721 |
MS.gene08144.t1 | MTR_6g027680 | 58.784 | 592 | 218 | 6 | 5 | 590 | 4 | 575 | 0.0 | 697 |
MS.gene08144.t1 | MTR_6g027630 | 57.823 | 588 | 232 | 4 | 10 | 590 | 4 | 582 | 0.0 | 686 |
MS.gene08144.t1 | MTR_6g027630 | 59.375 | 544 | 211 | 3 | 86 | 628 | 1 | 535 | 0.0 | 668 |
MS.gene08144.t1 | MTR_6g027670 | 55.280 | 322 | 122 | 4 | 271 | 590 | 5 | 306 | 1.56e-114 | 350 |
MS.gene08144.t1 | MTR_7g007850 | 38.028 | 426 | 245 | 6 | 21 | 435 | 22 | 439 | 1.82e-76 | 258 |
MS.gene08144.t1 | MTR_7g007850 | 38.028 | 426 | 245 | 6 | 21 | 435 | 22 | 439 | 3.88e-76 | 256 |
MS.gene08144.t1 | MTR_7g007850 | 38.028 | 426 | 245 | 6 | 21 | 435 | 22 | 439 | 6.52e-76 | 258 |
MS.gene08144.t1 | MTR_8g089320 | 36.410 | 390 | 241 | 3 | 35 | 424 | 64 | 446 | 9.11e-76 | 258 |
MS.gene08144.t1 | MTR_7g007850 | 38.795 | 415 | 235 | 6 | 21 | 424 | 22 | 428 | 1.44e-75 | 256 |
MS.gene08144.t1 | MTR_1g111740 | 36.473 | 414 | 247 | 4 | 21 | 425 | 28 | 434 | 7.33e-75 | 255 |
MS.gene08144.t1 | MTR_8g089360 | 35.279 | 394 | 248 | 2 | 31 | 424 | 65 | 451 | 1.03e-69 | 241 |
MS.gene08144.t1 | MTR_8g089360 | 35.279 | 394 | 248 | 2 | 31 | 424 | 48 | 434 | 1.07e-69 | 241 |
MS.gene08144.t1 | MTR_1g030660 | 33.835 | 399 | 249 | 4 | 31 | 424 | 53 | 441 | 1.61e-69 | 241 |
MS.gene08144.t1 | MTR_7g086580 | 82.143 | 140 | 13 | 2 | 674 | 801 | 1 | 140 | 6.87e-66 | 217 |
MS.gene08144.t1 | MTR_2g035430 | 32.376 | 383 | 252 | 3 | 42 | 424 | 71 | 446 | 8.56e-65 | 228 |
MS.gene08144.t1 | MTR_4g099270 | 38.060 | 402 | 246 | 1 | 30 | 431 | 9 | 407 | 1.93e-63 | 223 |
MS.gene08144.t1 | MTR_4g099270 | 38.420 | 367 | 223 | 1 | 19 | 385 | 19 | 382 | 1.18e-57 | 202 |
MS.gene08144.t1 | MTR_8g461380 | 33.943 | 383 | 244 | 4 | 43 | 424 | 79 | 453 | 1.74e-55 | 202 |
MS.gene08144.t1 | MTR_8g089340 | 36.066 | 305 | 188 | 3 | 120 | 424 | 1 | 298 | 5.86e-46 | 171 |
MS.gene08144.t1 | MTR_4g099270 | 39.931 | 288 | 170 | 1 | 19 | 306 | 19 | 303 | 3.57e-44 | 162 |
MS.gene08144.t1 | MTR_4g099270 | 37.584 | 298 | 183 | 1 | 134 | 431 | 1 | 295 | 7.65e-43 | 162 |
MS.gene08144.t1 | MTR_7g086760 | 40.845 | 142 | 30 | 3 | 668 | 756 | 51 | 191 | 1.89e-19 | 90.5 |
MS.gene08144.t1 | MTR_8g089342 | 38.961 | 77 | 47 | 0 | 35 | 111 | 65 | 141 | 4.32e-14 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08144.t1 | AT3G03720 | 65.484 | 620 | 189 | 4 | 25 | 641 | 3 | 600 | 0.0 | 823 |
MS.gene08144.t1 | AT1G58030 | 62.830 | 643 | 216 | 6 | 10 | 641 | 5 | 635 | 0.0 | 811 |
MS.gene08144.t1 | AT5G36940 | 60.821 | 633 | 203 | 5 | 25 | 641 | 6 | 609 | 0.0 | 763 |
MS.gene08144.t1 | AT1G05940 | 33.169 | 609 | 300 | 12 | 42 | 630 | 47 | 568 | 6.58e-86 | 285 |
MS.gene08144.t1 | AT1G05940 | 33.748 | 563 | 268 | 11 | 42 | 586 | 47 | 522 | 5.59e-79 | 265 |
MS.gene08144.t1 | AT1G05940 | 41.645 | 389 | 212 | 6 | 42 | 423 | 47 | 427 | 1.34e-78 | 263 |
MS.gene08144.t1 | AT5G04770 | 37.250 | 400 | 246 | 3 | 31 | 426 | 45 | 443 | 8.48e-78 | 263 |
MS.gene08144.t1 | AT3G10600 | 38.213 | 403 | 236 | 4 | 31 | 425 | 44 | 441 | 5.53e-74 | 253 |
MS.gene08144.t1 | AT4G21120 | 35.025 | 394 | 249 | 3 | 31 | 424 | 58 | 444 | 1.38e-72 | 249 |
MS.gene08144.t1 | AT5G04770 | 36.338 | 355 | 221 | 3 | 31 | 381 | 45 | 398 | 2.62e-67 | 229 |
MS.gene08144.t1 | AT2G34960 | 32.821 | 390 | 254 | 3 | 42 | 431 | 63 | 444 | 7.65e-66 | 230 |
MS.gene08144.t1 | AT1G05940 | 30.467 | 535 | 267 | 10 | 115 | 630 | 2 | 450 | 1.91e-61 | 215 |
MS.gene08144.t1 | AT1G17120 | 30.175 | 401 | 273 | 4 | 31 | 431 | 69 | 462 | 1.04e-56 | 205 |
MS.gene08144.t1 | AT3G10600 | 36.667 | 300 | 177 | 4 | 134 | 425 | 1 | 295 | 7.87e-54 | 193 |
MS.gene08144.t1 | AT5G04770 | 36.027 | 297 | 185 | 3 | 134 | 426 | 1 | 296 | 9.92e-50 | 182 |
MS.gene08144.t1 | AT4G21120 | 35.216 | 301 | 188 | 3 | 124 | 424 | 1 | 294 | 1.32e-47 | 176 |
Find 212 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCTGTTCTTGCATTCTTTA+TGG | 0.111551 | 7.1:-18810684 | MS.gene08144:CDS |
GCTGAGGAGATCGGGGTATC+AGG | 0.228074 | 7.1:+18811403 | None:intergenic |
TGCAATGCAAGAAGATAATA+TGG | 0.244685 | 7.1:-18806303 | MS.gene08144:CDS |
GCCGGAGTATATATTCTTAT+TGG | 0.245616 | 7.1:-18813109 | MS.gene08144:CDS |
AGACAACCTACCTTCATTTC+TGG | 0.247014 | 7.1:-18812251 | MS.gene08144:CDS |
GTGGAACGAAATGAGTTATT+TGG | 0.249591 | 7.1:+18804903 | None:intergenic |
TTTGCAGCCACGGGTCTTTA+TGG | 0.251178 | 7.1:-18810804 | MS.gene08144:intron |
GGAGGGAGGTTTAGAGGATT+TGG | 0.255235 | 7.1:-18813931 | MS.gene08144:CDS |
AAAGTGTAACACACCAGATT+TGG | 0.270117 | 7.1:+18812543 | None:intergenic |
GAAGGAGGAGGGAGGTTTAG+AGG | 0.271853 | 7.1:-18813937 | MS.gene08144:CDS |
ATAGGGATTCTCATTGTTAC+TGG | 0.285615 | 7.1:-18809390 | MS.gene08144:CDS |
GTTTCTGTGTGGTTGTTAAT+TGG | 0.289337 | 7.1:-18808465 | MS.gene08144:CDS |
ACCTACTTACTAATTGATCT+TGG | 0.298888 | 7.1:-18808589 | MS.gene08144:CDS |
CTTGTATCAGCAGTTATTGT+TGG | 0.303825 | 7.1:-18811451 | MS.gene08144:CDS |
AAGTGTAACACACCAGATTT+GGG | 0.305178 | 7.1:+18812544 | None:intergenic |
ATTATAGTTGGTGGATATCT+AGG | 0.315127 | 7.1:-18811980 | MS.gene08144:CDS |
TTATCTCAGGGTTGCTTGGC+TGG | 0.328252 | 7.1:-18812628 | MS.gene08144:intron |
ATCATGCTACAAGGATGAAT+TGG | 0.329507 | 7.1:-18806686 | MS.gene08144:CDS |
TTATCTGTTGTTGATCTTGT+TGG | 0.332921 | 7.1:-18813841 | MS.gene08144:CDS |
TACAGACCTGGGACATCTTT+CGG | 0.333301 | 7.1:+18809356 | None:intergenic |
TAATATTTCATCAGTGATTA+CGG | 0.341474 | 7.1:-18807085 | MS.gene08144:intron |
CCATAGCTCTTCTATGTATA+GGG | 0.343695 | 7.1:-18809407 | MS.gene08144:CDS |
ATGCTATTCATTATTATAGT+TGG | 0.345054 | 7.1:-18811992 | MS.gene08144:CDS |
TCAGGGTTCAACTCATAATA+TGG | 0.349037 | 7.1:+18811421 | None:intergenic |
GTAATATCACTCTTTATTGC+TGG | 0.353988 | 7.1:-18813052 | MS.gene08144:CDS |
GATCCATTGCTGAGGCATTC+TGG | 0.357731 | 7.1:-18810438 | MS.gene08144:CDS |
CGTCATACCTTGCCAGGTCT+TGG | 0.363463 | 7.1:-18812226 | MS.gene08144:CDS |
AGAAGATAATATGGGAAAAT+CGG | 0.365645 | 7.1:-18806294 | MS.gene08144:CDS |
TAGAAAATGCTGAGGAGATC+GGG | 0.372190 | 7.1:+18811395 | None:intergenic |
AAGTTGATTCTGTTCATTGC+AGG | 0.373454 | 7.1:-18813888 | MS.gene08144:CDS |
TGGATAATGATTGTGGAGGT+TGG | 0.376289 | 7.1:-18813985 | None:intergenic |
ACCATAGCTCTTCTATGTAT+AGG | 0.377588 | 7.1:-18809408 | MS.gene08144:CDS |
TGAATCTGCTGTTGCAACTT+TGG | 0.378209 | 7.1:-18805945 | MS.gene08144:CDS |
GTTGTTGATCTTGTTGGAAT+TGG | 0.378497 | 7.1:-18813835 | MS.gene08144:intron |
CAATTGTGTATTCAAGAATC+AGG | 0.379970 | 7.1:+18812595 | None:intergenic |
GAGGATTTGGAAGCTTGATT+AGG | 0.382177 | 7.1:-18813918 | MS.gene08144:CDS |
GTTTACCACAGTTGCAGTTT+CGG | 0.390572 | 7.1:-18810526 | MS.gene08144:CDS |
CTCAGGGTTGCTTGGCTGGT+TGG | 0.391357 | 7.1:-18812624 | MS.gene08144:intron |
TTTGTTTCAGAATCTGTTGA+TGG | 0.392249 | 7.1:-18804944 | MS.gene08144:intron |
GCATGTCGGTGTCCGTCAGC+AGG | 0.398287 | 7.1:-18812989 | MS.gene08144:CDS |
AAGGAATCTGTGTGCGCCTA+TGG | 0.398385 | 7.1:+18810738 | None:intergenic |
CATTGTTACTGGTTCAGCTT+CGG | 0.400963 | 7.1:-18809379 | MS.gene08144:CDS |
ATCACCCTCCTCTTGTGCCT+TGG | 0.404934 | 7.1:-18812163 | MS.gene08144:CDS |
GGAGTGAACGGGATGTTTGC+TGG | 0.408743 | 7.1:-18811820 | MS.gene08144:CDS |
GGATATCTAGGTTTCAAAAC+TGG | 0.410011 | 7.1:-18811968 | MS.gene08144:CDS |
TAAAATGCTACTTAGGTTGA+TGG | 0.413008 | 7.1:-18806349 | MS.gene08144:intron |
CTGATTCTTGAATACACAAT+TGG | 0.416556 | 7.1:-18812594 | MS.gene08144:CDS |
CCTCTTGTGCCTTGGAATCA+AGG | 0.417875 | 7.1:-18812155 | MS.gene08144:CDS |
ATATTTATCTCAGGGTTGCT+TGG | 0.418414 | 7.1:-18812632 | MS.gene08144:intron |
CGCGTAACGTTGTTTGGAGT+GGG | 0.419567 | 7.1:-18809197 | MS.gene08144:CDS |
ATGGATGTTTCTCAGTTAGC+AGG | 0.419596 | 7.1:-18810665 | MS.gene08144:CDS |
GTAGGTGTTTATTAGAATAC+AGG | 0.425123 | 7.1:+18808606 | None:intergenic |
CTGGCTCGTCATACCTTGCC+AGG | 0.429847 | 7.1:-18812232 | MS.gene08144:CDS |
CTTGCCAGGTCTTGGAATAG+TGG | 0.435867 | 7.1:-18812218 | MS.gene08144:CDS |
CCTACTTACTAATTGATCTT+GGG | 0.436245 | 7.1:-18808588 | MS.gene08144:intron |
CTATTCATTATTATAGTTGG+TGG | 0.442304 | 7.1:-18811989 | MS.gene08144:CDS |
TTAGCCTTGGAAGAGGTCAT+TGG | 0.443899 | 7.1:+18804871 | None:intergenic |
GGGTTGCTTGGCTGGTTGGT+TGG | 0.444076 | 7.1:-18812620 | MS.gene08144:CDS |
AAGAACTGATCCCAACAAAC+TGG | 0.445568 | 7.1:+18811213 | None:intergenic |
TCAGGGGTTGGAGCTACAAT+AGG | 0.446905 | 7.1:-18813133 | MS.gene08144:intron |
CATCCCTCTCCGTCCCTCTT+CGG | 0.449192 | 7.1:-18807051 | MS.gene08144:CDS |
GATTTGGAAGCTTGATTAGG+AGG | 0.455266 | 7.1:-18813915 | MS.gene08144:CDS |
GCAGGTAAGAATGGAACAAA+TGG | 0.455904 | 7.1:+18808631 | None:intergenic |
TTAACAATGAACTGTGAGTT+CGG | 0.456289 | 7.1:+18808418 | None:intergenic |
GAGGTTGGGAATGGAGGTGT+TGG | 0.456337 | 7.1:-18813970 | MS.gene08144:CDS |
ATTTACCTCCTCGGCTGTGC+TGG | 0.457172 | 7.1:+18811753 | None:intergenic |
TCGTGGCATAACCCCAAATC+TGG | 0.457510 | 7.1:-18812556 | MS.gene08144:intron |
ATCAACAACAGATAACTTCC+TGG | 0.457625 | 7.1:+18813849 | None:intergenic |
GGATAATGATTGTGGAGGTT+GGG | 0.460635 | 7.1:-18813984 | None:intergenic |
GCTGGAACGGGTACTTCATC+AGG | 0.461118 | 7.1:+18810480 | None:intergenic |
GTTGGGATCAGTTCTTCCTC+AGG | 0.462582 | 7.1:-18811206 | MS.gene08144:intron |
TTGCAGGGGACATCCTCAAT+TGG | 0.464542 | 7.1:-18813872 | MS.gene08144:CDS |
AGGGACGGAGAGGGATGAAA+AGG | 0.465597 | 7.1:+18807057 | None:intergenic |
AGCAGTTGCAGCAGCTAAGA+AGG | 0.468010 | 7.1:-18806032 | MS.gene08144:CDS |
AAGAGTGATATTACAAGTGC+TGG | 0.469118 | 7.1:+18813061 | None:intergenic |
TCATGCTACAAGGATGAATT+GGG | 0.473692 | 7.1:-18806685 | MS.gene08144:CDS |
TAATAGCTTCCAATTAGCCT+TGG | 0.474706 | 7.1:+18804858 | None:intergenic |
TTTCTAGCTATGGGATGGAA+TGG | 0.476792 | 7.1:-18811378 | MS.gene08144:CDS |
TGGAACAGTTGCAAGGGAGC+AGG | 0.479849 | 7.1:-18813089 | MS.gene08144:CDS |
CTAGAAAATGCTGAGGAGAT+CGG | 0.480682 | 7.1:+18811394 | None:intergenic |
GAATAACTAGTAAGATCAAC+GGG | 0.483841 | 7.1:+18810384 | None:intergenic |
GACAGGTACATAATAACAAC+CGG | 0.485204 | 7.1:-18811256 | MS.gene08144:intron |
CATTATACATACATATGCAT+TGG | 0.487204 | 7.1:-18812956 | MS.gene08144:CDS |
TTTGTGCAGCATAATTGTGC+TGG | 0.487828 | 7.1:-18809162 | MS.gene08144:CDS |
ATGATTGTGGAGGTTGGGAA+TGG | 0.488128 | 7.1:-18813979 | MS.gene08144:CDS |
TTCTAGCTATGGGATGGAAT+GGG | 0.490305 | 7.1:-18811377 | MS.gene08144:CDS |
GGTTTCAAAACTGGATGGGT+TGG | 0.492849 | 7.1:-18811959 | MS.gene08144:CDS |
AACATCCCGTTCACTCCGTA+TGG | 0.493158 | 7.1:+18811826 | None:intergenic |
TTCAATAGTCATTACCCGCT+CGG | 0.495052 | 7.1:+18811926 | None:intergenic |
TGAATTTCAGGGTTGATACA+TGG | 0.496642 | 7.1:-18808494 | MS.gene08144:intron |
GTACTTATATACTTGTTCTA+CGG | 0.497366 | 7.1:-18808441 | MS.gene08144:CDS |
ACAGATGTTAGCAGTGAAGC+TGG | 0.499130 | 7.1:+18810462 | None:intergenic |
GATGATACCAGGCATACCTT+TGG | 0.500319 | 7.1:-18809125 | MS.gene08144:CDS |
ATACAGGCAGCAGGTAAGAA+TGG | 0.501573 | 7.1:+18808622 | None:intergenic |
GATCTCATCAGCACGGGCCG+AGG | 0.505505 | 7.1:+18808380 | None:intergenic |
AGTAAGATCAACGGGACTTA+CGG | 0.507603 | 7.1:+18810392 | None:intergenic |
GATAACTTCCTGGCCAATTG+AGG | 0.510966 | 7.1:+18813859 | None:intergenic |
ATCTAGGTTTCAAAACTGGA+TGG | 0.510988 | 7.1:-18811964 | MS.gene08144:CDS |
GTTAGCAGTGAAGCTGGAAC+GGG | 0.511872 | 7.1:+18810468 | None:intergenic |
TGAGTGTCCAAAGGTATGCC+TGG | 0.515176 | 7.1:+18809118 | None:intergenic |
TCAATAGTCATTACCCGCTC+GGG | 0.515511 | 7.1:+18811927 | None:intergenic |
GTTTGCCTGTGCAATTTCTC+CGG | 0.515804 | 7.1:-18807017 | MS.gene08144:intron |
TTGAAAAGCACTATTGTCAC+TGG | 0.518658 | 7.1:-18810716 | MS.gene08144:CDS |
GGTATTGAAGAAGAAGGAGG+AGG | 0.519553 | 7.1:-18813949 | MS.gene08144:CDS |
CTTATGAGTATTTACCTCCT+CGG | 0.520525 | 7.1:+18811744 | None:intergenic |
GTGATGATATTGAGGAAGAC+AGG | 0.522363 | 7.1:-18810416 | MS.gene08144:CDS |
CCTCAACGAGATTTGCCAAT+CGG | 0.523301 | 7.1:-18811514 | MS.gene08144:CDS |
ATCATAAAAGAAGTAACTAA+AGG | 0.524620 | 7.1:-18810309 | MS.gene08144:intron |
TTTATTAGAATACAGGCAGC+AGG | 0.525300 | 7.1:+18808613 | None:intergenic |
CAAAACCGAAACTGCAACTG+TGG | 0.525340 | 7.1:+18810521 | None:intergenic |
AATGATTTGCTTGAGAGCGA+TGG | 0.525419 | 7.1:+18808358 | None:intergenic |
CTGCCGAAGAGGGACGGAGA+GGG | 0.526615 | 7.1:+18807048 | None:intergenic |
GGTCTTTATGGCAATGGCTA+GGG | 0.527222 | 7.1:-18810792 | MS.gene08144:CDS |
TTTATGGCAATGGCTAGGGA+TGG | 0.527645 | 7.1:-18810788 | MS.gene08144:CDS |
GGGGACATCCTCAATTGGCC+AGG | 0.528544 | 7.1:-18813867 | MS.gene08144:CDS |
ATTGTGGAGGTTGGGAATGG+AGG | 0.530605 | 7.1:-18813976 | MS.gene08144:CDS |
CCCTATACATAGAAGAGCTA+TGG | 0.531318 | 7.1:+18809407 | None:intergenic |
GGGTCTTTATGGCAATGGCT+AGG | 0.532747 | 7.1:-18810793 | MS.gene08144:CDS |
CTCTGATATCGACGACGAAG+AGG | 0.535143 | 7.1:-18806656 | MS.gene08144:intron |
TTGAAGAAGAAGGAGGAGGG+AGG | 0.535917 | 7.1:-18813945 | MS.gene08144:CDS |
CCCAAGATCAATTAGTAAGT+AGG | 0.536674 | 7.1:+18808588 | None:intergenic |
TTGTATGTACCTCATCCTCT+TGG | 0.538819 | 7.1:+18806269 | None:intergenic |
GCATCTCTTTCTCGTTGCAA+AGG | 0.540391 | 7.1:+18806323 | None:intergenic |
TGGGGTTATGCCACGAGCAA+CGG | 0.540435 | 7.1:+18812563 | None:intergenic |
TGTTTCTCAGTTAGCAGGGA+TGG | 0.542189 | 7.1:-18810660 | MS.gene08144:intron |
TGTTAGCAGTGAAGCTGGAA+CGG | 0.544774 | 7.1:+18810467 | None:intergenic |
CATACATATGCATTGGAGAA+GGG | 0.546121 | 7.1:-18812949 | MS.gene08144:intron |
GCCACGGGTCTTTATGGCAA+TGG | 0.546605 | 7.1:-18810798 | MS.gene08144:CDS |
CTGAGGAGATCGGGGTATCA+GGG | 0.546753 | 7.1:+18811404 | None:intergenic |
TTCTTATTGGAACAGTTGCA+AGG | 0.546898 | 7.1:-18813096 | MS.gene08144:CDS |
GTATGACGAGCCAGAAATGA+AGG | 0.547165 | 7.1:+18812241 | None:intergenic |
CCTATGGATATCTGAGAAGA+AGG | 0.547174 | 7.1:+18810754 | None:intergenic |
GCGCGTAACGTTGTTTGGAG+TGG | 0.548214 | 7.1:-18809198 | MS.gene08144:CDS |
CCTTCTTCTCAGATATCCAT+AGG | 0.548969 | 7.1:-18810754 | MS.gene08144:CDS |
TGGATGTTTCTCAGTTAGCA+GGG | 0.549416 | 7.1:-18810664 | MS.gene08144:CDS |
AGGCATACCTTTGGACACTC+AGG | 0.550135 | 7.1:-18809116 | MS.gene08144:CDS |
CAGGTAAGAATGGAACAAAT+GGG | 0.554758 | 7.1:+18808632 | None:intergenic |
TGCATACCTCCTTGATTCCA+AGG | 0.554886 | 7.1:+18812146 | None:intergenic |
AGTTGATTCTGTTCATTGCA+GGG | 0.555667 | 7.1:-18813887 | MS.gene08144:CDS |
AAAATGCTACTTAGGTTGAT+GGG | 0.556262 | 7.1:-18806348 | MS.gene08144:intron |
TTTGGGAATACAGGTTAGTG+TGG | 0.556347 | 7.1:-18810562 | MS.gene08144:intron |
GTATTGAAGAAGAAGGAGGA+GGG | 0.562087 | 7.1:-18813948 | MS.gene08144:CDS |
TCTAGGTTTCAAAACTGGAT+GGG | 0.564163 | 7.1:-18811963 | MS.gene08144:CDS |
TCTTATTGGAACAGTTGCAA+GGG | 0.564932 | 7.1:-18813095 | MS.gene08144:CDS |
GGTGTTGGTATTGAAGAAGA+AGG | 0.565878 | 7.1:-18813955 | MS.gene08144:CDS |
CACTATTCCAAGACCTGGCA+AGG | 0.565945 | 7.1:+18812219 | None:intergenic |
CCTTGATTCCAAGGCACAAG+AGG | 0.566099 | 7.1:+18812155 | None:intergenic |
TGATTCCAAGGCACAAGAGG+AGG | 0.566902 | 7.1:+18812158 | None:intergenic |
AAATGCAATCTATGTTCCCT+CGG | 0.568189 | 7.1:-18808397 | MS.gene08144:CDS |
CTTCCAATTAGCCTTGGAAG+AGG | 0.568758 | 7.1:+18804864 | None:intergenic |
TCACCAGAATGCCTCAGCAA+TGG | 0.572848 | 7.1:+18810435 | None:intergenic |
TTGGTTATGAGCTCCCGAGC+GGG | 0.573670 | 7.1:-18811940 | MS.gene08144:intron |
TTGGCAAAATTCAGAACGGT+AGG | 0.573772 | 7.1:-18805926 | MS.gene08144:intron |
GTTGGAGCTACAATAGGAGC+CGG | 0.575369 | 7.1:-18813127 | MS.gene08144:CDS |
TCCAATAAGAATATATACTC+CGG | 0.577392 | 7.1:+18813108 | None:intergenic |
CATGTCGGTGTCCGTCAGCA+GGG | 0.580739 | 7.1:-18812988 | MS.gene08144:CDS |
GCAATGCAAGAAGATAATAT+GGG | 0.581162 | 7.1:-18806302 | MS.gene08144:CDS |
GCATTCTGGTGATGATATTG+AGG | 0.585511 | 7.1:-18810424 | MS.gene08144:CDS |
ATTGATGTTTCAGAGTTCAA+CGG | 0.585901 | 7.1:-18812050 | MS.gene08144:intron |
GGTGCTTCAGCCGTTGCTCG+TGG | 0.585993 | 7.1:-18812573 | MS.gene08144:CDS |
ATCTCATCAGCACGGGCCGA+GGG | 0.586036 | 7.1:+18808381 | None:intergenic |
TGGATATCTGAGAAGAAGGC+GGG | 0.587686 | 7.1:+18810758 | None:intergenic |
TTTGAATAAATGTACTATGG+AGG | 0.588379 | 7.1:-18805993 | MS.gene08144:CDS |
ACAGTTGCAAGGGAGCAGGC+AGG | 0.593337 | 7.1:-18813085 | MS.gene08144:CDS |
AACGCGTAGGACTGCCGAAG+AGG | 0.594837 | 7.1:+18807037 | None:intergenic |
ACATACATATGCATTGGAGA+AGG | 0.595331 | 7.1:-18812950 | MS.gene08144:CDS |
ACGCGTAGGACTGCCGAAGA+GGG | 0.596578 | 7.1:+18807038 | None:intergenic |
AATGCAATCGATATACCGAT+TGG | 0.599231 | 7.1:+18811499 | None:intergenic |
AAATCGGAACCAAGAGGATG+AGG | 0.600852 | 7.1:-18806278 | MS.gene08144:intron |
TTCAGTGACCAGCACAGCCG+AGG | 0.600944 | 7.1:-18811761 | MS.gene08144:CDS |
GTAGGACTGCCGAAGAGGGA+CGG | 0.601391 | 7.1:+18807042 | None:intergenic |
AGCAACGTAATGAGAAGACT+AGG | 0.604938 | 7.1:-18809449 | MS.gene08144:CDS |
AGAATAACTAGTAAGATCAA+CGG | 0.607364 | 7.1:+18810383 | None:intergenic |
ACAATTAATACAGCTGCACA+TGG | 0.608628 | 7.1:+18812190 | None:intergenic |
GTTGGTATTGAAGAAGAAGG+AGG | 0.609082 | 7.1:-18813952 | MS.gene08144:CDS |
AATTGTGTATTCAAGAATCA+GGG | 0.610606 | 7.1:+18812596 | None:intergenic |
GCGATGGATCTCATCAGCAC+GGG | 0.614977 | 7.1:+18808374 | None:intergenic |
AGCGATGGATCTCATCAGCA+CGG | 0.615000 | 7.1:+18808373 | None:intergenic |
GAACGTCTGACTTGTCGTGT+AGG | 0.616270 | 7.1:+18810349 | None:intergenic |
CTTCGGCCGAAAGATGTCCC+AGG | 0.616341 | 7.1:-18809362 | MS.gene08144:intron |
TGATAAGCACTCCCTGCTGA+CGG | 0.617138 | 7.1:+18812977 | None:intergenic |
GTTGATTCTGTTCATTGCAG+GGG | 0.618218 | 7.1:-18813886 | MS.gene08144:CDS |
AACTCCAATGACCTCTTCCA+AGG | 0.621531 | 7.1:-18804875 | MS.gene08144:CDS |
GATTCCAAGGCACAAGAGGA+GGG | 0.629073 | 7.1:+18812159 | None:intergenic |
TCAACCACTATTCCAAGACC+TGG | 0.629524 | 7.1:+18812214 | None:intergenic |
AACTTTGGCAAAATTCAGAA+CGG | 0.631746 | 7.1:-18805930 | MS.gene08144:CDS |
CCGATTGGCAAATCTCGTTG+AGG | 0.632991 | 7.1:+18811514 | None:intergenic |
GCATAAAACAAGATGATACC+AGG | 0.633157 | 7.1:-18809136 | MS.gene08144:CDS |
TTGGGAATACAGGTTAGTGT+GGG | 0.634743 | 7.1:-18810561 | MS.gene08144:intron |
CATACCTCCTGAGTGTCCAA+AGG | 0.643801 | 7.1:+18809109 | None:intergenic |
CTAGGAGAAAACTTGCAGCA+TGG | 0.648138 | 7.1:-18809431 | MS.gene08144:CDS |
TAGTACCGGAGAAATTGCAC+AGG | 0.654445 | 7.1:+18807012 | None:intergenic |
AATTGCACAGGCAAACGCGT+AGG | 0.655849 | 7.1:+18807024 | None:intergenic |
GCCATTGCCATAAAGACCCG+TGG | 0.656912 | 7.1:+18810797 | None:intergenic |
AGTGACCAGCACAGCCGAGG+AGG | 0.658209 | 7.1:-18811758 | MS.gene08144:intron |
AGAAAATGCTGAGGAGATCG+GGG | 0.660720 | 7.1:+18811396 | None:intergenic |
ATGGATATCTGAGAAGAAGG+CGG | 0.666742 | 7.1:+18810757 | None:intergenic |
ACTGCCGAAGAGGGACGGAG+AGG | 0.670570 | 7.1:+18807047 | None:intergenic |
CCCATAGCTAGAAAATGCTG+AGG | 0.671121 | 7.1:+18811387 | None:intergenic |
AGTGTAACACACCAGATTTG+GGG | 0.684801 | 7.1:+18812545 | None:intergenic |
GGTTGAGGAGTTGAATACAA+TGG | 0.686732 | 7.1:-18806818 | MS.gene08144:CDS |
GGAACGGGTACTTCATCAGG+CGG | 0.688210 | 7.1:+18810483 | None:intergenic |
ATGGGAAAATCGGAACCAAG+AGG | 0.689281 | 7.1:-18806284 | MS.gene08144:CDS |
CATACCTTTGGACACTCAGG+AGG | 0.693693 | 7.1:-18809113 | MS.gene08144:intron |
GACGAGCCAGAAATGAAGGT+AGG | 0.694492 | 7.1:+18812245 | None:intergenic |
CATCTGTTGATCCATTGCTG+AGG | 0.697497 | 7.1:-18810446 | MS.gene08144:CDS |
GTTATGCAGAACTTGCATGT+CGG | 0.697999 | 7.1:-18813003 | MS.gene08144:CDS |
GTTGGTTATGAGCTCCCGAG+CGG | 0.700456 | 7.1:-18811941 | MS.gene08144:CDS |
ACTGTGTGAATCATGCTACA+AGG | 0.702948 | 7.1:-18806695 | MS.gene08144:CDS |
AGGTCATTGGAGTTGCAGCG+TGG | 0.710019 | 7.1:+18804884 | None:intergenic |
CATGGCTAAGAGTTTCTGTG+TGG | 0.734405 | 7.1:-18808476 | MS.gene08144:CDS |
CTTGTGCCTTGGAATCAAGG+AGG | 0.737334 | 7.1:-18812152 | MS.gene08144:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 18804871 | 18814001 | 18804871 | ID=MS.gene08144 |
chr7.1 | mRNA | 18804871 | 18814001 | 18804871 | ID=MS.gene08144.t1;Parent=MS.gene08144 |
chr7.1 | exon | 18813836 | 18814001 | 18813836 | ID=MS.gene08144.t1.exon1;Parent=MS.gene08144.t1 |
chr7.1 | CDS | 18813836 | 18814001 | 18813836 | ID=cds.MS.gene08144.t1;Parent=MS.gene08144.t1 |
chr7.1 | exon | 18812950 | 18813151 | 18812950 | ID=MS.gene08144.t1.exon2;Parent=MS.gene08144.t1 |
chr7.1 | CDS | 18812950 | 18813151 | 18812950 | ID=cds.MS.gene08144.t1;Parent=MS.gene08144.t1 |
chr7.1 | exon | 18812557 | 18812641 | 18812557 | ID=MS.gene08144.t1.exon3;Parent=MS.gene08144.t1 |
chr7.1 | CDS | 18812557 | 18812641 | 18812557 | ID=cds.MS.gene08144.t1;Parent=MS.gene08144.t1 |
chr7.1 | exon | 18812153 | 18812293 | 18812153 | ID=MS.gene08144.t1.exon4;Parent=MS.gene08144.t1 |
chr7.1 | CDS | 18812153 | 18812293 | 18812153 | ID=cds.MS.gene08144.t1;Parent=MS.gene08144.t1 |
chr7.1 | exon | 18811941 | 18812059 | 18811941 | ID=MS.gene08144.t1.exon5;Parent=MS.gene08144.t1 |
chr7.1 | CDS | 18811941 | 18812059 | 18811941 | ID=cds.MS.gene08144.t1;Parent=MS.gene08144.t1 |
chr7.1 | exon | 18811759 | 18811855 | 18811759 | ID=MS.gene08144.t1.exon6;Parent=MS.gene08144.t1 |
chr7.1 | CDS | 18811759 | 18811855 | 18811759 | ID=cds.MS.gene08144.t1;Parent=MS.gene08144.t1 |
chr7.1 | exon | 18811373 | 18811545 | 18811373 | ID=MS.gene08144.t1.exon7;Parent=MS.gene08144.t1 |
chr7.1 | CDS | 18811373 | 18811545 | 18811373 | ID=cds.MS.gene08144.t1;Parent=MS.gene08144.t1 |
chr7.1 | exon | 18811207 | 18811273 | 18811207 | ID=MS.gene08144.t1.exon8;Parent=MS.gene08144.t1 |
chr7.1 | CDS | 18811207 | 18811273 | 18811207 | ID=cds.MS.gene08144.t1;Parent=MS.gene08144.t1 |
chr7.1 | exon | 18810661 | 18810819 | 18810661 | ID=MS.gene08144.t1.exon9;Parent=MS.gene08144.t1 |
chr7.1 | CDS | 18810661 | 18810819 | 18810661 | ID=cds.MS.gene08144.t1;Parent=MS.gene08144.t1 |
chr7.1 | exon | 18810310 | 18810571 | 18810310 | ID=MS.gene08144.t1.exon10;Parent=MS.gene08144.t1 |
chr7.1 | CDS | 18810310 | 18810571 | 18810310 | ID=cds.MS.gene08144.t1;Parent=MS.gene08144.t1 |
chr7.1 | exon | 18809363 | 18809471 | 18809363 | ID=MS.gene08144.t1.exon11;Parent=MS.gene08144.t1 |
chr7.1 | CDS | 18809363 | 18809471 | 18809363 | ID=cds.MS.gene08144.t1;Parent=MS.gene08144.t1 |
chr7.1 | exon | 18809114 | 18809226 | 18809114 | ID=MS.gene08144.t1.exon12;Parent=MS.gene08144.t1 |
chr7.1 | CDS | 18809114 | 18809226 | 18809114 | ID=cds.MS.gene08144.t1;Parent=MS.gene08144.t1 |
chr7.1 | exon | 18808589 | 18808664 | 18808589 | ID=MS.gene08144.t1.exon13;Parent=MS.gene08144.t1 |
chr7.1 | CDS | 18808589 | 18808664 | 18808589 | ID=cds.MS.gene08144.t1;Parent=MS.gene08144.t1 |
chr7.1 | exon | 18808351 | 18808506 | 18808351 | ID=MS.gene08144.t1.exon14;Parent=MS.gene08144.t1 |
chr7.1 | CDS | 18808351 | 18808506 | 18808351 | ID=cds.MS.gene08144.t1;Parent=MS.gene08144.t1 |
chr7.1 | exon | 18807018 | 18807093 | 18807018 | ID=MS.gene08144.t1.exon15;Parent=MS.gene08144.t1 |
chr7.1 | CDS | 18807018 | 18807093 | 18807018 | ID=cds.MS.gene08144.t1;Parent=MS.gene08144.t1 |
chr7.1 | exon | 18806657 | 18806839 | 18806657 | ID=MS.gene08144.t1.exon16;Parent=MS.gene08144.t1 |
chr7.1 | CDS | 18806657 | 18806839 | 18806657 | ID=cds.MS.gene08144.t1;Parent=MS.gene08144.t1 |
chr7.1 | exon | 18806279 | 18806356 | 18806279 | ID=MS.gene08144.t1.exon17;Parent=MS.gene08144.t1 |
chr7.1 | CDS | 18806279 | 18806356 | 18806279 | ID=cds.MS.gene08144.t1;Parent=MS.gene08144.t1 |
chr7.1 | exon | 18805927 | 18806071 | 18805927 | ID=MS.gene08144.t1.exon18;Parent=MS.gene08144.t1 |
chr7.1 | CDS | 18805927 | 18806071 | 18805927 | ID=cds.MS.gene08144.t1;Parent=MS.gene08144.t1 |
chr7.1 | exon | 18804871 | 18804956 | 18804871 | ID=MS.gene08144.t1.exon19;Parent=MS.gene08144.t1 |
chr7.1 | CDS | 18804871 | 18804956 | 18804871 | ID=cds.MS.gene08144.t1;Parent=MS.gene08144.t1 |
Gene Sequence |
Protein sequence |