AlfalfaGEDB | MS.gene38965

M. sativa cultivar XinJiangDaYe / MS.gene38965

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF13520.9 PF13906.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38965.t1	RHN40813.1	96.3	572	19	1	21	592	20	589	2.5e-310	1074.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38965.t1	Q9SHH0	71.5	565	161	0	22	586	23	587	1.3e-233	810.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38965.t1	A0A396GJV2	96.3	572	19	1	21	592	20	589	1.8e-310	1074.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene030903	MS.gene38965	PPI
MS.gene38965	MS.gene030907	PPI
MS.gene38965	MS.gene064542	PPI
MS.gene38965	MS.gene037356	PPI
MS.gene38965	MS.gene029217	PPI
MS.gene38965	MS.gene47928	PPI
MS.gene38965	MS.gene035805	PPI
MS.gene38965	MS.gene53499	PPI
MS.gene38965	MS.gene27968	PPI
MS.gene38965	MS.gene030906	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38965.t1	MTR_8g461380	95.608	592	23	2	1	592	1	589	0.0	1144
MS.gene38965.t1	MTR_2g035430	60.575	591	222	4	10	591	2	590	0.0	723
MS.gene38965.t1	MTR_8g089320	49.825	572	279	2	27	590	19	590	0.0	585
MS.gene38965.t1	MTR_8g089360	49.823	566	276	3	28	586	25	589	0.0	565
MS.gene38965.t1	MTR_8g089360	49.823	566	276	3	28	586	8	572	0.0	565
MS.gene38965.t1	MTR_1g030660	48.479	559	283	3	37	594	24	578	0.0	554
MS.gene38965.t1	MTR_6g034535	85.830	247	31	1	352	594	68	314	2.08e-149	433
MS.gene38965.t1	MTR_6g034535	67.708	96	6	1	106	201	19	89	1.01e-28	117
MS.gene38965.t1	MTR_8g089340	47.333	450	225	4	157	594	1	450	1.97e-135	403
MS.gene38965.t1	MTR_1g111740	40.174	575	313	8	37	590	7	571	3.70e-133	401

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38965.t1	AT1G17120	71.278	571	163	1	19	588	20	590	0.0	824
MS.gene38965.t1	AT2G34960	62.321	560	208	3	20	577	4	562	0.0	728
MS.gene38965.t1	AT4G21120	51.418	564	273	1	28	590	18	581	0.0	594
MS.gene38965.t1	AT4G21120	49.884	431	215	1	161	590	1	431	1.57e-148	436
MS.gene38965.t1	AT5G04770	40.253	554	312	5	38	576	15	564	1.78e-129	392
MS.gene38965.t1	AT3G10600	39.373	574	323	8	35	590	11	577	5.11e-129	391
MS.gene38965.t1	AT5G04770	43.490	384	207	2	38	411	15	398	3.96e-98	305
MS.gene38965.t1	AT3G10600	37.900	438	247	8	171	590	1	431	8.46e-90	285
MS.gene38965.t1	AT5G04770	37.358	439	252	6	171	590	1	435	1.69e-84	271
MS.gene38965.t1	AT1G05940	30.784	536	333	9	76	584	44	568	1.42e-61	214

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Find 128 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACCTTTAACACCGTA+AGG	0.526823	8.4:-49232213	None:intergenic
AACAAAACCACAACGGCTAA+TGG	0.322847	8.4:-49232045	None:intergenic
AACCACGAAGCTACTGGCGA+TGG	0.600504	8.4:+49231461	MS.gene38965:CDS
AACCGTGAAGAGAGAATGGA+AGG	0.591306	8.4:+49233152	MS.gene38965:CDS
AACCTGACGCTGCATATGAG+AGG	0.617228	8.4:-49231759	None:intergenic
AACGGTTATTTATTGTTTGA+TGG	0.330270	8.4:+49232359	MS.gene38965:CDS
AAGAGGCAACCGAAGGTTTG+GGG	0.551045	8.4:+49232948	MS.gene38965:CDS
AAGTATAGTGAGATTGATGC+TGG	0.595966	8.4:+49232405	MS.gene38965:CDS
AAGTTTGCTTGTTGGGTCAA+TGG	0.398278	8.4:+49232515	MS.gene38965:CDS
AATCACCGAGTTCAATTCTC+AGG	0.448824	8.4:-49231858	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTGATTAACAAAACCACAA+CGG	-	chr8.4:49232055-49232074	None:intergenic	30.0%
CAATAGGTATATCTCTTGAA+GGG	-	chr8.4:49232314-49232333	None:intergenic	30.0%
CACAATGATAAAGAACGATT+CGG	+	chr8.4:49231969-49231988	MS.gene38965:CDS	30.0%
GGATGAATAAGTGCAAAAAA+GGG	-	chr8.4:49232588-49232607	None:intergenic	30.0%
GTTCAAATTGGTATGAAATG+GGG	+	chr8.4:49232450-49232469	MS.gene38965:CDS	30.0%
TGGTTCAATGTCTATGATAA+CGG	+	chr8.4:49232341-49232360	MS.gene38965:CDS	30.0%
TTAACACCGTAAGGAAAAAA+CGG	-	chr8.4:49232207-49232226	None:intergenic	30.0%
AAAACACCTTTAACACCGTA+AGG	-	chr8.4:49232216-49232235	None:intergenic	35.0%
AAGTATAGTGAGATTGATGC+TGG	+	chr8.4:49232405-49232424	MS.gene38965:CDS	35.0%
AGTTGCAACCATATCAAAAC+CGG	-	chr8.4:49232271-49232290	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	49231403	49233187	49231403	ID=MS.gene38965
chr8.4	mRNA	49231403	49233187	49231403	ID=MS.gene38965.t1;Parent=MS.gene38965
chr8.4	exon	49231403	49233187	49231403	ID=MS.gene38965.t1.exon1;Parent=MS.gene38965.t1
chr8.4	CDS	49231403	49233187	49231403	ID=cds.MS.gene38965.t1;Parent=MS.gene38965.t1

Gene Sequence

>MS.gene38965

ATGACACCACCGACATCATCCTCCTCCTCCTCCACGACCACCACCGCCGCAGCTTCAAAACCACGAAGCTACTGGCGATGGAGCAAGCAAGATTTCTTTCCAGAACCATCTTTCCAAACAGGAAAAACCTATCGAACCGCCTTAGCAAACACCTGCCCACGCTTAAAAGACCGTCTCCTCAACCGATCAACAGACTCTCATGAACTTCTCGTCCTTCCCAAAGCCAGTGAAAATTCCATGACTCGTTGCCTCACTTGGTGGGACTTAACCTGGCTCGCTTTCGGCGCTGTCGTCGGTTCCGGTATCTTCGTCGTCACCGGTCAAGAAGCTCGTTTCAATGCTGGTCCTTCCATTATCCTCTCATATGCAGCGTCAGGTTTCTCTGCTCTTCTTTCAGCTTTCATCTACGCTGAATTCGCCGTTGAAGTTCCCGTCGCTGGTGGCTCGTTTTCATTCCTGAGAATTGAACTCGGTGATTTTCTTGCTTTCATTGCTGCCGGGAATATTCTCCTTGAAGCTCTTGTTGGTGCTGCCGGTCTCGGTCGTTCATGGTCTTCTTACTTTGCCACAATGATAAAGAACGATTCGGATTATTTTCGGATCAGAATTGATTCTTTTAAAACCGGTTTCAATATGCTTGATCCATTAGCCGTTGTGGTTTTGTTAATCACTAACGGAATCGCGGCTAGTGGAACACGAAAAACATCTATCTTAACATGGTTAAGTTCAATTGTTACAACTTTTATTATCGGTTTCATTATTGTGATCGGTTTTATACACGGAAAGTCGTCAAATTTAACACCGTTTTTTCCTTACGGTGTTAAAGGTGTTTTCAACGCTGCAGCTGTTGTGTATTGGTCTTATACCGGTTTTGATATGGTTGCAACTATGGCTGAAGAAACTAAAAACCCTTCAAGAGATATACCTATTGGTTTAATTGGTTCAATGTCTATGATAACGGTTATTTATTGTTTGATGGCATTGGCACTTGTGAATATGGTTAAGTATAGTGAGATTGATGCTGGTGCTGCTTATTCAGTTGCTTTTGTTCAAATTGGTATGAAATGGGGTAAATATTTAGTGAGTATTTGTGCTTTGAAAGGAATGACAACAAGTTTGCTTGTTGGGTCAATGGGACAAGCTAGGTACACTACTCAAATTGCAAGGTCACATATGATTCCACCCTTTTTTGCACTTATTCATCCCAAAACTGGAACACCTATTAATGCTACACTTTTGACAACTTTGTCAAGTTGTGTTGTTGCTCTTTTTACTAGTTTGGATGTTCTGTCTAGTGTTTTTTCTGTAAGTACTCTTTTCATTTTTATGCTTATGGCTATTGCATTGCTTGTGAGGAGATATTATGGGAGGGAATCAACGGATAAGAGTGATTTGTGGAAGGTTCTTTTGTGTTTGTTTGTTGTTGTTGGTTCTTGTGTTGCTGGGACTGCGCTATGGAATTCTGGTTTGTTTGGTTGGATTGGGTATACAGTGGCTGCTTGTGTTTGGTTTTTGGCGACTTTGATGATGAGTTTGCTTCCGAAGAAGAGGCAACCGAAGGTTTGGGGGGTTCCGTTGGTTCCGTGGGTGCCATCATTGTCAATTGCGACGAACCTTTTTCTCATGGGATCATTGGGTTATGAGGCTTTTTTTAGGTTCTTGATTTGTACTGGTGTGATGCTTTTGTATTATTTATTTGTGGGTGTTCATGCAACTTATGATGTGGATCATGGAATTGGTCAAGAATCAAACCGTGAAGAGAGAATGGAAGGTGCCATAGTTTAG

Protein sequence

>MS.gene38965.t1

MTPPTSSSSSSTTTTAAASKPRSYWRWSKQDFFPEPSFQTGKTYRTALANTCPRLKDRLLNRSTDSHELLVLPKASENSMTRCLTWWDLTWLAFGAVVGSGIFVVTGQEARFNAGPSIILSYAASGFSALLSAFIYAEFAVEVPVAGGSFSFLRIELGDFLAFIAAGNILLEALVGAAGLGRSWSSYFATMIKNDSDYFRIRIDSFKTGFNMLDPLAVVVLLITNGIAASGTRKTSILTWLSSIVTTFIIGFIIVIGFIHGKSSNLTPFFPYGVKGVFNAAAVVYWSYTGFDMVATMAEETKNPSRDIPIGLIGSMSMITVIYCLMALALVNMVKYSEIDAGAAYSVAFVQIGMKWGKYLVSICALKGMTTSLLVGSMGQARYTTQIARSHMIPPFFALIHPKTGTPINATLLTTLSSCVVALFTSLDVLSSVFSVSTLFIFMLMAIALLVRRYYGRESTDKSDLWKVLLCLFVVVGSCVAGTALWNSGLFGWIGYTVAACVWFLATLMMSLLPKKRQPKVWGVPLVPWVPSLSIATNLFLMGSLGYEAFFRFLICTGVMLLYYLFVGVHATYDVDHGIGQESNREERMEGAIV